CmoCh08G009610 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G009610
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionChloroplast 50S ribosomal protein L3
LocationCmo_Chr08 : 6230238 .. 6232432 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTCCATTTATCCTTTTTATTATATTTATTTGTTTAATAATGGGGGGAAAATAAGAGAAATAAACGGATAAGAAAACGAGCAATCCTCGCCATCCCCAGTTCGTTCTTCGTCTTTCTTCTTCTTCTTCTTCTTCTTCATCACCACATGAATCTCTGAAACCAGAGAAGAAGAGATGTCGGCCATACCATTTTCTTCAGCTTCAACCTCAATCCGACATCCAATTTTCACTAACAATGCTTCTTCTTCATCTTCGTCTCTGAGGCTAAGAACTTCCTTCCTCGCCCTTCCTCTCAAATCCCACCACAACAGCAACCTTCGTCTCCAATTTCCGGCACAAAGAACCACTAGACACACTAACAATGGCGTACCGGTTTGTATGAGTATGGAGGCCGGCATTGGAGTAATGGCCACCAAGCTCGGTATGATGAGCTTCTTCGAGCCGGACGGCAAGGTCGTCCCTGTCACGGTGGTTGGTTTCAAGGAAGGCAATATCGTCACGCAGGTTAAGACGGAGGCGACCGACGGCTACAGTGCCGTTCAGGTTGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAACCGGAATTAGGGCATCTCGAGAAAGCTGGAGCGATTCCTATGCGCCATTTGCAGGAGTTTCGTCTTGTGAATGTTGATGGATTTGAGCCCAATCAACGGTTGGTTTTCAATGAACTTTTCAAGGAGGGCGATCTGGTTGATGTCTCCGGCATCACAATTGGAAAGGGATTTCAAGGTTTTGTGCTTCTTGCTCATTCTGTTTTGAAGTCTATGTTTCATTGAATTTCCTTGGATTTTCATTTGCCTCTAAGCTTCTGGCTTTTGTTCTGTGCCTGGATAATGTTGGAGTTGAATTTAGGCATGCTCAGGAAGAATTAACCATGAATTTTCATTGATATTGTACTGTTGAATGCCCAATTACATATACAATTCCAAAGTTTGAAGCAGTTTAAAATTGGATTTTCATTTTCCTCCAAGACTTCTTCTGGCCTTTGTTCTGCGCCTGGATAATGTTGGAGTTGAATTTAGGCATGCTCTGGAAGAATTAACCATGAATTTTCATTGATATTTTACTGTTGGATGCCCAATTACTACAATTCCGAAGTCTGAAGCCGTTCAAAATTTCTAAATCCCAAAGTATCTGTGAGATCTAAACATTCTTTACAAGAGTGAAAATCTCTCCCTTGCCGACACGTTTTAAAAACCTTGAAGGGAAGCCCGAAAGAAAAATTCCATAAAAGACAATATCTTTTGAAGTGGGTTTTGGTTGTTACAGTATTGATATCAGGAAATGTCATCTAAATCTCAAACGTTTTATGTTCCATACTGAATCTCGATCTTGTTAGATTTTGCAAATTTCTTATGTGGGTGAGGAGGTGTGGGCTGTCTAGCAAGTTTTTATATGCTTAAGTTGGCGGTCCAGTAGACTCCATGATATTGTGCTTGCATCTAAATATACATGTTCAACTACTTACTATACTCTCCCTTTGTAGATCAGCTTAAGTATTAGTACTCGATTTATTACAAGGATTTGAACTCAAAATGTGTAATACCCTGTTAAATGACCATTAGAAATGAGAGCAAACTTTATGCTAGATTTTGATCCTTTAACACGTTCTCAATACCCCTTTGTGTAAACTTCGATATTAATTTGATTTACAAGACTCACTCAACATGTGGATAATGAATGTAAAGAAGAAAGTAAATTTAAATAATTTTATGTGTTCTTCATTCCTTTCAACACTACTCTCTTAACTGTTTTCGATCTAATTCTTCTGTAGGTGGAATCAAGAGGCACAACTTCAAAAGGGGTCCGATGACCCACGGTTCGAAGAGCCACAGGGCACTTGGATCAATCGGTGCAGGAACTACACCAGGTCGCGTGTACAAGGGGAAAAAGATGCCTGGAAGGATGGGAGGAACCAAGAGAAAGATCAGAAAACTGAAGATTGTAAAGGTAGATGATGAGCTTAATGTTGTGATGATCAAAGGAGCTGTCCCTGGTAAGCCAGGAAACCTTCTTCGAATAGCTCCTGCAAAGATAGTAGGAAAGAACATTCCTAAGAATTAGCTTTAATCTTTTGAGCTGTTGCATCTCTTCAACTGGTTATTTGTATTATGATTACTTCACACTTGAGTTCTCCTGAAAATTTTTAATCCATTCCCACTTTTT

mRNA sequence

TTTTTCCATTTATCCTTTTTATTATATTTATTTGTTTAATAATGGGGGGAAAATAAGAGAAATAAACGGATAAGAAAACGAGCAATCCTCGCCATCCCCAGTTCGTTCTTCGTCTTTCTTCTTCTTCTTCTTCTTCTTCATCACCACATGAATCTCTGAAACCAGAGAAGAAGAGATGTCGGCCATACCATTTTCTTCAGCTTCAACCTCAATCCGACATCCAATTTTCACTAACAATGCTTCTTCTTCATCTTCGTCTCTGAGGCTAAGAACTTCCTTCCTCGCCCTTCCTCTCAAATCCCACCACAACAGCAACCTTCGTCTCCAATTTCCGGCACAAAGAACCACTAGACACACTAACAATGGCGTACCGGTTTGTATGAGTATGGAGGCCGGCATTGGAGTAATGGCCACCAAGCTCGGTATGATGAGCTTCTTCGAGCCGGACGGCAAGGTCGTCCCTGTCACGGTGGTTGGTTTCAAGGAAGGCAATATCGTCACGCAGGTTAAGACGGAGGCGACCGACGGCTACAGTGCCGTTCAGGTTGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAACCGGAATTAGGGCATCTCGAGAAAGCTGGAGCGATTCCTATGCGCCATTTGCAGGAGTTTCGTCTTGTGAATGTTGATGGATTTGAGCCCAATCAACGGTTGGTTTTCAATGAACTTTTCAAGGAGGGCGATCTGGTTGATGTCTCCGGCATCACAATTGGAAAGGGATTTCAAGGTGGAATCAAGAGGCACAACTTCAAAAGGGGTCCGATGACCCACGGTTCGAAGAGCCACAGGGCACTTGGATCAATCGGTGCAGGAACTACACCAGGTCGCGTGTACAAGGGGAAAAAGATGCCTGGAAGGATGGGAGGAACCAAGAGAAAGATCAGAAAACTGAAGATTGTAAAGGTAGATGATGAGCTTAATGTTGTGATGATCAAAGGAGCTGTCCCTGGTAAGCCAGGAAACCTTCTTCGAATAGCTCCTGCAAAGATAGTAGGAAAGAACATTCCTAAGAATTAGCTTTAATCTTTTGAGCTGTTGCATCTCTTCAACTGGTTATTTGTATTATGATTACTTCACACTTGAGTTCTCCTGAAAATTTTTAATCCATTCCCACTTTTT

Coding sequence (CDS)

ATGTCGGCCATACCATTTTCTTCAGCTTCAACCTCAATCCGACATCCAATTTTCACTAACAATGCTTCTTCTTCATCTTCGTCTCTGAGGCTAAGAACTTCCTTCCTCGCCCTTCCTCTCAAATCCCACCACAACAGCAACCTTCGTCTCCAATTTCCGGCACAAAGAACCACTAGACACACTAACAATGGCGTACCGGTTTGTATGAGTATGGAGGCCGGCATTGGAGTAATGGCCACCAAGCTCGGTATGATGAGCTTCTTCGAGCCGGACGGCAAGGTCGTCCCTGTCACGGTGGTTGGTTTCAAGGAAGGCAATATCGTCACGCAGGTTAAGACGGAGGCGACCGACGGCTACAGTGCCGTTCAGGTTGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAACCGGAATTAGGGCATCTCGAGAAAGCTGGAGCGATTCCTATGCGCCATTTGCAGGAGTTTCGTCTTGTGAATGTTGATGGATTTGAGCCCAATCAACGGTTGGTTTTCAATGAACTTTTCAAGGAGGGCGATCTGGTTGATGTCTCCGGCATCACAATTGGAAAGGGATTTCAAGGTGGAATCAAGAGGCACAACTTCAAAAGGGGTCCGATGACCCACGGTTCGAAGAGCCACAGGGCACTTGGATCAATCGGTGCAGGAACTACACCAGGTCGCGTGTACAAGGGGAAAAAGATGCCTGGAAGGATGGGAGGAACCAAGAGAAAGATCAGAAAACTGAAGATTGTAAAGGTAGATGATGAGCTTAATGTTGTGATGATCAAAGGAGCTGTCCCTGGTAAGCCAGGAAACCTTCTTCGAATAGCTCCTGCAAAGATAGTAGGAAAGAACATTCCTAAGAATTAG
Homology
[Close]
BLAST of CmoCh08G009610 vs. Swiss-Prot
Match: RK3_TOBAC (50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum GN=RPL3 PE=2 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 8.1e-109
Identity = 201/260 (77.31%), Postives = 224/260 (86.15%), Query Frame = 1 

Query: 31  LRTSFLALPLKSHHNSNLRLQFPAQRTTRHTNNGVPVCMSMEAGIGVMATKLGMMSFFEP 90
           L+T+ L L     H   LR     + T+ H +    +  S+EAG+GVMATKLGMMSFFE 
Sbjct: 1   LKTTPLTLRSPFLHRLPLRALKTHKPTSLHISKS-SISASLEAGVGVMATKLGMMSFFEE 60

Query: 91  DGKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPM 150
            G VVPVTVVGF+EGNIVTQ+KTEATDGY+AVQVGYRRVRDRKLTKPE+GHLEK+G IP+
Sbjct: 61  SGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRVRDRKLTKPEMGHLEKSGIIPL 120

Query: 151 RHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHG 210
           RHLQEFRL ++DGFE  Q+L F ELFKEGDLVDVSG TIGKGFQGGIKRHNFKRG MTHG
Sbjct: 121 RHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHG 180

Query: 211 SKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKVDDELNVVMIKGAVPGK 270
           SKSHR LGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVK+DD+LN++MIKGA+PGK
Sbjct: 181 SKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDQLNIIMIKGALPGK 240

Query: 271 PGNLLRIAPAKIVGKNIPKN 291
           PGNLLRIAPAKIVGKNIPK+
Sbjct: 241 PGNLLRIAPAKIVGKNIPKS 259

[Close]
BLAST of CmoCh08G009610 vs. Swiss-Prot
Match: RK3A_ARATH (50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana GN=RPL3A PE=2 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 4.0e-108
Identity = 193/224 (86.16%), Postives = 208/224 (92.86%), Query Frame = 1 

Query: 67  VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVGY 126
           V  SMEAGIGVM +KLGMMSFFE DG VVPVTVVGF+EGNIVTQ+KT ATDGY AVQ+GY
Sbjct: 48  VSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGY 107

Query: 127 RRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSG 186
           RRVRD+KLTKPE GHL+KAG IPMRHLQEFRL N++GFEPNQ+LVF+E+FKEGDLVDV+G
Sbjct: 108 RRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAG 167

Query: 187 ITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKI 246
            TIGKGFQGGIKRH+FKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGT+ KI
Sbjct: 168 TTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKI 227

Query: 247 RKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           RKLKIVKVD ELNVVMIKGA+PGKPGNLLRI PAKIVG NIPKN
Sbjct: 228 RKLKIVKVDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

[Close]
BLAST of CmoCh08G009610 vs. Swiss-Prot
Match: RL3_ACAM1 (50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) GN=rplC PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.1e-64
Identity = 123/213 (57.75%), Postives = 162/213 (76.06%), Query Frame = 1 

Query: 75  IGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNI-VTQVKTEATDGYSAVQVGYRRVRDRK 134
           +G++ TKLGM   F+  G+ +PVTVV  + G   VTQ+KT  TDGY+A+Q+GY    ++ 
Sbjct: 3   VGILGTKLGMTQVFDEAGRAIPVTVV--QAGPCPVTQIKTAQTDGYTAIQIGYGSTTEKA 62

Query: 135 LTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGF 194
           LT+PELGHL+K+G+ P+RHLQE+RL +V  +E  Q  +  +LF EG LVD+SG +IG+GF
Sbjct: 63  LTRPELGHLKKSGSTPVRHLQEYRLADVSEYELGQS-ISADLFSEGQLVDISGTSIGRGF 122

Query: 195 QGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVK 254
            G  KRHNF+RGPM HGSK+HRA GS GAGTTPGR+Y GK+M G+MG  K+ IRKL +V+
Sbjct: 123 AGYQKRHNFRRGPMGHGSKNHRAPGSTGAGTTPGRIYPGKRMAGQMGNVKKTIRKLTVVR 182

Query: 255 VDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKN 287
           VD E NV++IKG+VPGKPG LL I PA IVG++
Sbjct: 183 VDAERNVLLIKGSVPGKPGALLNIQPATIVGES 212

[Close]
BLAST of CmoCh08G009610 vs. Swiss-Prot
Match: RL3_SYNP2 (50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplC PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.7e-64
Identity = 125/212 (58.96%), Postives = 163/212 (76.89%), Query Frame = 1 

Query: 75  IGVMATKLGMMSFFEPD-GKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVGYRRVRDRK 134
           +G++ TKLGM   F+ + G  +PVTVV       VTQ+KT  TDGY++VQ+GY  V+++ 
Sbjct: 3   LGILGTKLGMTQIFDNETGTAIPVTVVQAGPCT-VTQIKTSETDGYTSVQIGYGDVKEKN 62

Query: 135 LTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGF 194
           LTKP+LGHL+KA A P+RHL+E+RL +V G+E  Q +  N +F+ G +VDVSG TIG+GF
Sbjct: 63  LTKPQLGHLKKADAAPLRHLKEYRLDDVSGYELGQAITAN-IFEAGQVVDVSGNTIGRGF 122

Query: 195 QGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVK 254
            G  KRHNFKRG MTHGSK+HR  GS GAGTTPGRVY GK+M GR GGTK  +RKL++V+
Sbjct: 123 AGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTKITVRKLEVVR 182

Query: 255 VDDELNVVMIKGAVPGKPGNLLRIAPAKIVGK 286
           VD+E N+++IKGA+PGK GNLL IAP+ IVG+
Sbjct: 183 VDEEKNLLLIKGAIPGKAGNLLSIAPSNIVGQ 212

[Close]
BLAST of CmoCh08G009610 vs. Swiss-Prot
Match: RL3_CYAP7 (50S ribosomal protein L3 OS=Cyanothece sp. (strain PCC 7424) GN=rplC PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-62
Identity = 123/212 (58.02%), Postives = 159/212 (75.00%), Query Frame = 1 

Query: 75  IGVMATKLGMMSFFEPD-GKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVGYRRVRDRK 134
           +G++ TKLGM   F+ + G  +PVTV+      I TQVKT ATDGY+++Q+GY  V+++ 
Sbjct: 3   VGILGTKLGMTQIFDKETGIAIPVTVIHAGPCPI-TQVKTPATDGYNSIQIGYGEVKEKA 62

Query: 135 LTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGF 194
           L KP+LGHL+K+ + P+RHL+E+RL N   ++    +   +LFK GDLVDV+G TIG+GF
Sbjct: 63  LNKPKLGHLKKSASTPVRHLKEYRLENAADYQLGDGIKV-DLFKPGDLVDVAGKTIGRGF 122

Query: 195 QGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVK 254
            G  KRHNFKRG MTHGSK+HR  GS GAGTTPGRVY GK+M GR GGT+  IRKL +V+
Sbjct: 123 AGYQKRHNFKRGSMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTQVTIRKLTVVQ 182

Query: 255 VDDELNVVMIKGAVPGKPGNLLRIAPAKIVGK 286
           +D E N+++IKGAVPGKPGNLL I PAK VGK
Sbjct: 183 IDTERNLILIKGAVPGKPGNLLSITPAKTVGK 212

[Close]
BLAST of CmoCh08G009610 vs. TrEMBL
Match: A0A0A0K9U5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078530 PE=3 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 6.8e-139
Identity = 258/294 (87.76%), Postives = 274/294 (93.20%), Query Frame = 1 

Query: 1   MSAIPFSSASTSIRHPIFTNN----ASSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQR 60
           MS I FSSAS S +HPIFTNN    +SSSSSSL LRTSFLALPLKSH+ +NLR  FP + 
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHNKNNLRFHFPTRP 60

Query: 61  TTRHTNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEAT 120
           TTR  ++G+ VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKT+AT
Sbjct: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120

Query: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELF 180
           DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRL +VD FEPNQRLVFNELF
Sbjct: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180

Query: 181 KEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMP 240
           KEGDLVDVSG TIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKKMP
Sbjct: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240

Query: 241 GRMGGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           GRMGGTKRKIRKLKIVK+D++LNVVMIKGAVPGKPGNLLRIAPAKIVG+NIPK+
Sbjct: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 294

[Close]
BLAST of CmoCh08G009610 vs. TrEMBL
Match: F6I5H4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00390 PE=3 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 1.8e-115
Identity = 222/285 (77.89%), Postives = 247/285 (86.67%), Query Frame = 1 

Query: 7   SSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQRTTRHTNNGVP 66
           +++ + IR P+        S SL L +SF   PL++H    L+L+    R+ + T   +P
Sbjct: 4   TASLSCIRLPLSPTTQHFPSHSLSLSSSFTLNPLQTH----LQLRLQPFRSAKST---LP 63

Query: 67  VC-MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVG 126
           +  MSMEAG+GVMATKLGMMS+FEP+GKVVPVTVVGF+EGNIVTQVKTEATDGYSAVQVG
Sbjct: 64  IIRMSMEAGVGVMATKLGMMSYFEPEGKVVPVTVVGFREGNIVTQVKTEATDGYSAVQVG 123

Query: 127 YRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVS 186
           YRRVRDRKLTKPE+GHLEKAG IPMRHLQEFRLV+VDGFEPNQ+LVF ELFKEGDLVDVS
Sbjct: 124 YRRVRDRKLTKPEMGHLEKAGTIPMRHLQEFRLVSVDGFEPNQKLVFEELFKEGDLVDVS 183

Query: 187 GITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRK 246
           GITIGKGFQGGIKRHNF+RGPMTHGSKSHRALGSIGAGTTPG VYKGKKMPGRMGGTK K
Sbjct: 184 GITIGKGFQGGIKRHNFRRGPMTHGSKSHRALGSIGAGTTPGHVYKGKKMPGRMGGTKTK 243

Query: 247 IRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           IRKLKIVK+D++L VVMIKGAVPGKPGNLLRI PAKIVGKNIPKN
Sbjct: 244 IRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRITPAKIVGKNIPKN 281

[Close]
BLAST of CmoCh08G009610 vs. TrEMBL
Match: W9R517_9ROSA (50S ribosomal protein L3-1 OS=Morus notabilis GN=L484_023807 PE=3 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 1.1e-112
Identity = 215/276 (77.90%), Postives = 232/276 (84.06%), Query Frame = 1 

Query: 27  SSLRLRTSFLALPLKSHHNSNLRLQFPAQ------------RTTRHTNNGVPVCMSMEAG 86
           S++ + +S   LP K   N +LR  F +             +TT        V MSMEAG
Sbjct: 2   STMSISSSIAYLPRKPSLNCSLRSSFLSPLSLSPNATKNSLKTTSAAKRQAVVAMSMEAG 61

Query: 87  IGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVGYRRVRDRKL 146
           IGVMATKLGMMSFFE DGKVVPVT+VGFKEGNIVTQVK  ATDGY AVQVGYRRVRDRKL
Sbjct: 62  IGVMATKLGMMSFFESDGKVVPVTIVGFKEGNIVTQVKNLATDGYDAVQVGYRRVRDRKL 121

Query: 147 TKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGFQ 206
           TKPE GHL+KAGAIPMRHLQEFRL +V+GFEPNQ+LVF E+FKEGDLVDV+GITIGKGFQ
Sbjct: 122 TKPEFGHLQKAGAIPMRHLQEFRLQSVEGFEPNQKLVFEEIFKEGDLVDVAGITIGKGFQ 181

Query: 207 GGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKV 266
           GGIKRHNF+RGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTK KIRKLKIVK+
Sbjct: 182 GGIKRHNFRRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKLKIVKI 241

Query: 267 DDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           D +LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 242 DTDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 277

[Close]
BLAST of CmoCh08G009610 vs. TrEMBL
Match: G7J8L6_MEDTR (50S ribosomal protein L3P OS=Medicago truncatula GN=MTR_3g118210 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 1.9e-112
Identity = 213/268 (79.48%), Postives = 232/268 (86.57%), Query Frame = 1 

Query: 23  SSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQRTTRHTNNGVPVCMSMEAGIGVMATKL 82
           SSSSSSL   TSF A  +K             Q+  R     + V MS+EAG+GVM TKL
Sbjct: 17  SSSSSSLSFSTSFSAQFVK------------LQQHQRKRGGAMVVKMSLEAGVGVMGTKL 76

Query: 83  GMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVGYRRVRDRKLTKPELGHL 142
           GMMSFF+P+G+VVPVTVVGFKEGNIVTQ+KT+ATDGY+AVQVGYRRVRDRKLTKPE+GHL
Sbjct: 77  GMMSFFQPNGEVVPVTVVGFKEGNIVTQIKTDATDGYNAVQVGYRRVRDRKLTKPEMGHL 136

Query: 143 EKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGFQGGIKRHNF 202
           EKAGAIPMRHLQEFRL +VDGFEPNQRLVF+ELF EGDLVDVSG TIGKGFQGGIKRHNF
Sbjct: 137 EKAGAIPMRHLQEFRLQSVDGFEPNQRLVFDELFNEGDLVDVSGTTIGKGFQGGIKRHNF 196

Query: 203 KRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKVDDELNVVM 262
           KRGPM+HGSKSHR LGSIGAGTTPGRVYKGKKMPGRMGGT RK RKLKIVK+D +LNV+M
Sbjct: 197 KRGPMSHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTNRKTRKLKIVKIDKDLNVIM 256

Query: 263 IKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           IKGA+PGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 257 IKGALPGKPGNLLRIAPAKIVGKNIPKN 272

[Close]
BLAST of CmoCh08G009610 vs. TrEMBL
Match: A0A0S3RAN6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G001800 PE=3 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 2.1e-111
Identity = 220/279 (78.85%), Postives = 236/279 (84.59%), Query Frame = 1 

Query: 12  SIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQRTTRHTNNGVPVCMSM 71
           SI  PI+ ++ SS S S RL  S  A PL+    + +R              GV V MSM
Sbjct: 5   SIPSPIYGSSHSSLSIS-RLPYSLTAQPLQVSRRAKVR--------------GV-VVMSM 64

Query: 72  EAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVGYRRVRD 131
           EAGIGVMATKLGMMSFF+PDG+VVPVTVVGFKEGNIVTQ+KTEATDGY +VQVGYRRVRD
Sbjct: 65  EAGIGVMATKLGMMSFFQPDGEVVPVTVVGFKEGNIVTQIKTEATDGYDSVQVGYRRVRD 124

Query: 132 RKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSGITIGK 191
           RKLTKPE+GHLEK GAIPMRHLQEFRL  VD FE NQRLVF+ELFKEGDLVDVSG TIGK
Sbjct: 125 RKLTKPEMGHLEKVGAIPMRHLQEFRLQTVDQFELNQRLVFDELFKEGDLVDVSGTTIGK 184

Query: 192 GFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKI 251
           GFQGGIKRHNF+RGPMTHGSKSHR LGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKI
Sbjct: 185 GFQGGIKRHNFRRGPMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKI 244

Query: 252 VKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           VK+D +LNVVMIKGA+PGKPGNLLRI PAKIVGKNIPKN
Sbjct: 245 VKIDKDLNVVMIKGALPGKPGNLLRITPAKIVGKNIPKN 267

[Close]
BLAST of CmoCh08G009610 vs. TAIR10
Match: AT2G43030.1 (AT2G43030.1 Ribosomal protein L3 family protein)

HSP 1 Score: 392.5 bits (1007), Expect = 2.3e-109
Identity = 193/224 (86.16%), Postives = 208/224 (92.86%), Query Frame = 1 

Query: 67  VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVGY 126
           V  SMEAGIGVM +KLGMMSFFE DG VVPVTVVGF+EGNIVTQ+KT ATDGY AVQ+GY
Sbjct: 48  VSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGY 107

Query: 127 RRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSG 186
           RRVRD+KLTKPE GHL+KAG IPMRHLQEFRL N++GFEPNQ+LVF+E+FKEGDLVDV+G
Sbjct: 108 RRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAG 167

Query: 187 ITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKI 246
            TIGKGFQGGIKRH+FKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGT+ KI
Sbjct: 168 TTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKI 227

Query: 247 RKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           RKLKIVKVD ELNVVMIKGA+PGKPGNLLRI PAKIVG NIPKN
Sbjct: 228 RKLKIVKVDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

[Close]
BLAST of CmoCh08G009610 vs. TAIR10
Match: AT3G17465.1 (AT3G17465.1 ribosomal protein L3 plastid)

HSP 1 Score: 142.9 bits (359), Expect = 3.1e-34
Identity = 82/206 (39.81%), Postives = 123/206 (59.71%), Query Frame = 1 

Query: 76  GVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVGYRRVRDRKLT 135
           G++A K GM + ++  GK +P++++ + + NIV+QVKT   +G  A+Q+G  + + + L+
Sbjct: 78  GIIAVKCGMTALWDKWGKRIPISIL-WVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLS 137

Query: 136 KPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGFQG 195
           K  +GH    G    R L+EF  V  D   P    +    F  G  VDV+GIT GKGFQG
Sbjct: 138 KAVVGHFRAQGVPLKRKLREFP-VTEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQG 197

Query: 196 GIKRHNFKRGPMTHG-SKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKV 255
            +KRH F   P +HG S SHR+ GS G    PG+V+KG+KM GRMG  +R ++ + + K+
Sbjct: 198 CMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKI 257

Query: 256 DDELNVVMIKGAVPGKPGNLLRIAPA 281
           D   N++ ++G VPG  GN + I  A
Sbjct: 258 DPARNLMWVRGQVPGAEGNFVFIKDA 281

[Close]
BLAST of CmoCh08G009610 vs. NCBI nr
Match: gi|659120254|ref|XP_008460096.1| (PREDICTED: 50S ribosomal protein L3, chloroplastic [Cucumis melo])

HSP 1 Score: 514.2 bits (1323), Expect = 1.5e-142
Identity = 264/293 (90.10%), Postives = 276/293 (94.20%), Query Frame = 1 

Query: 1   MSAIPFSSASTSIRHPIFTNN---ASSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQRT 60
           MS I FSSAS S +HPIFTNN   +SSSSSSL LRTSFLALPLKSHH +NLR  FP +RT
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRRT 60

Query: 61  TRHTNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATD 120
           TR  ++G+ VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATD
Sbjct: 61  TRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATD 120

Query: 121 GYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFK 180
           GYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRL +VDGFEPNQRLVFNELFK
Sbjct: 121 GYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELFK 180

Query: 181 EGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPG 240
           EGDLVDVSG TIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKKMPG
Sbjct: 181 EGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPG 240

Query: 241 RMGGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           RMGGTKRKIRKLKIVK+D++LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 RMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293

[Close]
BLAST of CmoCh08G009610 vs. NCBI nr
Match: gi|449473944|ref|XP_004154027.1| (PREDICTED: 50S ribosomal protein L3, chloroplastic [Cucumis sativus])

HSP 1 Score: 501.5 bits (1290), Expect = 9.8e-139
Identity = 258/294 (87.76%), Postives = 274/294 (93.20%), Query Frame = 1 

Query: 1   MSAIPFSSASTSIRHPIFTNN----ASSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQR 60
           MS I FSSAS S +HPIFTNN    +SSSSSSL LRTSFLALPLKSH+ +NLR  FP + 
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHNKNNLRFHFPTRP 60

Query: 61  TTRHTNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEAT 120
           TTR  ++G+ VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKT+AT
Sbjct: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120

Query: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELF 180
           DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRL +VD FEPNQRLVFNELF
Sbjct: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180

Query: 181 KEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMP 240
           KEGDLVDVSG TIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKKMP
Sbjct: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240

Query: 241 GRMGGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           GRMGGTKRKIRKLKIVK+D++LNVVMIKGAVPGKPGNLLRIAPAKIVG+NIPK+
Sbjct: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 294

[Close]
BLAST of CmoCh08G009610 vs. NCBI nr
Match: gi|225436243|ref|XP_002271466.1| (PREDICTED: 50S ribosomal protein L3, chloroplastic [Vitis vinifera])

HSP 1 Score: 423.7 bits (1088), Expect = 2.6e-115
Identity = 222/285 (77.89%), Postives = 247/285 (86.67%), Query Frame = 1 

Query: 7   SSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQRTTRHTNNGVP 66
           +++ + IR P+        S SL L +SF   PL++H    L+L+    R+ + T   +P
Sbjct: 4   TASLSCIRLPLSPTTQHFPSHSLSLSSSFTLNPLQTH----LQLRLQPFRSAKST---LP 63

Query: 67  VC-MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVG 126
           +  MSMEAG+GVMATKLGMMS+FEP+GKVVPVTVVGF+EGNIVTQVKTEATDGYSAVQVG
Sbjct: 64  IIRMSMEAGVGVMATKLGMMSYFEPEGKVVPVTVVGFREGNIVTQVKTEATDGYSAVQVG 123

Query: 127 YRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVS 186
           YRRVRDRKLTKPE+GHLEKAG IPMRHLQEFRLV+VDGFEPNQ+LVF ELFKEGDLVDVS
Sbjct: 124 YRRVRDRKLTKPEMGHLEKAGTIPMRHLQEFRLVSVDGFEPNQKLVFEELFKEGDLVDVS 183

Query: 187 GITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRK 246
           GITIGKGFQGGIKRHNF+RGPMTHGSKSHRALGSIGAGTTPG VYKGKKMPGRMGGTK K
Sbjct: 184 GITIGKGFQGGIKRHNFRRGPMTHGSKSHRALGSIGAGTTPGHVYKGKKMPGRMGGTKTK 243

Query: 247 IRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           IRKLKIVK+D++L VVMIKGAVPGKPGNLLRI PAKIVGKNIPKN
Sbjct: 244 IRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRITPAKIVGKNIPKN 281

[Close]
BLAST of CmoCh08G009610 vs. NCBI nr
Match: gi|1009105732|ref|XP_015888387.1| (PREDICTED: 50S ribosomal protein L3, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 420.2 bits (1079), Expect = 2.9e-114
Identity = 227/291 (78.01%), Postives = 250/291 (85.91%), Query Frame = 1 

Query: 8   SASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQRTTRHT------ 67
           S S+SI    + ++  +S+S+L+ R+S L     S  +++L  QF +++T  H       
Sbjct: 5   SMSSSIHSIGYLSHKPNSASTLK-RSSLLTSSFLSPPSTSLAAQF-SKKTNFHVLINTKG 64

Query: 68  --NNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGY 127
               GV V MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGF+EGNIVTQVKT+ATDGY
Sbjct: 65  KKRMGVTV-MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFREGNIVTQVKTQATDGY 124

Query: 128 SAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEG 187
            AVQVGYRRVRD+KLTKPELGHLEKAGAIPMRHLQEFRL +V+GFE NQRLVF ELFKEG
Sbjct: 125 DAVQVGYRRVRDKKLTKPELGHLEKAGAIPMRHLQEFRLQSVEGFESNQRLVFEELFKEG 184

Query: 188 DLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRM 247
           DLVDVSG TIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRM
Sbjct: 185 DLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRM 244

Query: 248 GGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           GGTKRKIRKL+IVK+D +LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 245 GGTKRKIRKLRIVKIDSDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]
BLAST of CmoCh08G009610 vs. NCBI nr
Match: gi|703103199|ref|XP_010097667.1| (50S ribosomal protein L3-1 [Morus notabilis])

HSP 1 Score: 414.5 bits (1064), Expect = 1.6e-112
Identity = 215/276 (77.90%), Postives = 232/276 (84.06%), Query Frame = 1 

Query: 27  SSLRLRTSFLALPLKSHHNSNLRLQFPAQ------------RTTRHTNNGVPVCMSMEAG 86
           S++ + +S   LP K   N +LR  F +             +TT        V MSMEAG
Sbjct: 2   STMSISSSIAYLPRKPSLNCSLRSSFLSPLSLSPNATKNSLKTTSAAKRQAVVAMSMEAG 61

Query: 87  IGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVGYRRVRDRKL 146
           IGVMATKLGMMSFFE DGKVVPVT+VGFKEGNIVTQVK  ATDGY AVQVGYRRVRDRKL
Sbjct: 62  IGVMATKLGMMSFFESDGKVVPVTIVGFKEGNIVTQVKNLATDGYDAVQVGYRRVRDRKL 121

Query: 147 TKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGFQ 206
           TKPE GHL+KAGAIPMRHLQEFRL +V+GFEPNQ+LVF E+FKEGDLVDV+GITIGKGFQ
Sbjct: 122 TKPEFGHLQKAGAIPMRHLQEFRLQSVEGFEPNQKLVFEEIFKEGDLVDVAGITIGKGFQ 181

Query: 207 GGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKV 266
           GGIKRHNF+RGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTK KIRKLKIVK+
Sbjct: 182 GGIKRHNFRRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKLKIVKI 241

Query: 267 DDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           D +LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 242 DTDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 277

The following BLAST results are available for this feature:
BLAST of CmoCh08G009610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK3_TOBAC8.1e-10977.3150S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum GN=RPL3 ... [more]
RK3A_ARATH4.0e-10886.1650S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana GN=RPL3A PE=2 ... [more]
RL3_ACAM12.1e-6457.7550S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) GN=rplC PE=... [more]
RL3_SYNP22.7e-6458.9650S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR... [more]
RL3_CYAP71.1e-6258.0250S ribosomal protein L3 OS=Cyanothece sp. (strain PCC 7424) GN=rplC PE=3 SV=1[more]
BLAST of CmoCh08G009610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9U5_CUCSA6.8e-13987.76Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078530 PE=3 SV=1[more]
F6I5H4_VITVI1.8e-11577.89Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00390 PE=3 SV=... [more]
W9R517_9ROSA1.1e-11277.9050S ribosomal protein L3-1 OS=Morus notabilis GN=L484_023807 PE=3 SV=1[more]
G7J8L6_MEDTR1.9e-11279.4850S ribosomal protein L3P OS=Medicago truncatula GN=MTR_3g118210 PE=3 SV=1[more]
A0A0S3RAN6_PHAAN2.1e-11178.85Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G001800 PE=... [more]
BLAST of CmoCh08G009610 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G43030.12.3e-10986.16 Ribosomal protein L3 family protein[more]
AT3G17465.13.1e-3439.81 ribosomal protein L3 plastid[more]
BLAST of CmoCh08G009610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659120254|ref|XP_008460096.1|1.5e-14290.10PREDICTED: 50S ribosomal protein L3, chloroplastic [Cucumis melo][more]
gi|449473944|ref|XP_004154027.1|9.8e-13987.76PREDICTED: 50S ribosomal protein L3, chloroplastic [Cucumis sativus][more]
gi|225436243|ref|XP_002271466.1|2.6e-11577.89PREDICTED: 50S ribosomal protein L3, chloroplastic [Vitis vinifera][more]
gi|1009105732|ref|XP_015888387.1|2.9e-11478.01PREDICTED: 50S ribosomal protein L3, chloroplastic [Ziziphus jujuba][more]
gi|703103199|ref|XP_010097667.1|1.6e-11277.9050S ribosomal protein L3-1 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000597Ribosomal_L3
IPR009000Transl_B-barrel_sf
IPR019926Ribosomal_L3_CS
IPR019927Ribosomal_L3_bac/org-type
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0010207 photosystem II assembly
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0006364 rRNA processing
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016020 membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G009610.1CmoCh08G009610.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000597Ribosomal protein L3PFAMPF00297Ribosomal_L3coord: 170..256
score: 9.0
IPR009000Translation protein, beta-barrel domainunknownSSF50447Translation proteinscoord: 72..286
score: 8.83
IPR019926Ribosomal protein L3, conserved sitePROSITEPS00474RIBOSOMAL_L3coord: 176..199
scor
IPR019927Ribosomal protein L3, bacterial/organelle-typeHAMAPMF_01325_BRibosomal_L3_Bcoord: 74..281
score: 35
IPR019927Ribosomal protein L3, bacterial/organelle-typePANTHERPTHR1122950S RIBOSOMAL PROTEIN L3coord: 55..290
score: 1.6E
IPR019927Ribosomal protein L3, bacterial/organelle-typeTIGRFAMsTIGR03625TIGR03625coord: 76..277
score: 5.3
NoneNo IPR availableGENE3DG3DSA:2.40.30.10coord: 232..277
score: 8.7E-5coord: 76..105
score: 8.
NoneNo IPR availableGENE3DG3DSA:4.10.960.10coord: 150..231
score: 5.5
NoneNo IPR availablePANTHERPTHR11229:SF550S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTICcoord: 55..290
score: 1.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G009610Cucsa.362620Cucumber (Gy14) v1cgycmoB1008
CmoCh08G009610CmaCh17G000450Cucurbita maxima (Rimu)cmacmoB381
CmoCh08G009610CmaCh08G009900Cucurbita maxima (Rimu)cmacmoB912
CmoCh08G009610Cla006976Watermelon (97103) v1cmowmB870
CmoCh08G009610Csa6G078530Cucumber (Chinese Long) v2cmocuB892
CmoCh08G009610MELO3C022485Melon (DHL92) v3.5.1cmomeB802
CmoCh08G009610ClCG06G000570Watermelon (Charleston Gray)cmowcgB801
CmoCh08G009610CSPI06G06030Wild cucumber (PI 183967)cmocpiB905
CmoCh08G009610Lsi09G018860Bottle gourd (USVL1VR-Ls)cmolsiB799
CmoCh08G009610Cp4.1LG12g00360Cucurbita pepo (Zucchini)cmocpeB844
CmoCh08G009610Cp4.1LG17g02990Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G009610MELO3C022485.2Melon (DHL92) v3.6.1cmomedB905
CmoCh08G009610CsaV3_6G006340Cucumber (Chinese Long) v3cmocucB1057
CmoCh08G009610Cla97C06G109810Watermelon (97103) v2cmowmbB898
CmoCh08G009610Bhi12G002270Wax gourdcmowgoB1087
CmoCh08G009610CsGy6G006020Cucumber (Gy14) v2cgybcmoB856
CmoCh08G009610Carg11055Silver-seed gourdcarcmoB1452
CmoCh08G009610Carg10188Silver-seed gourdcarcmoB0324
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh08G009610CmoCh17G000470Cucurbita moschata (Rifu)cmocmoB325
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G009610Bottle gourd (USVL1VR-Ls)cmolsiB820
CmoCh08G009610Cucumber (Gy14) v2cgybcmoB428
CmoCh08G009610Melon (DHL92) v3.6.1cmomedB943
CmoCh08G009610Silver-seed gourdcarcmoB0326
CmoCh08G009610Silver-seed gourdcarcmoB0854
CmoCh08G009610Silver-seed gourdcarcmoB1289
CmoCh08G009610Cucumber (Chinese Long) v3cmocucB1039
CmoCh08G009610Watermelon (97103) v2cmowmbB890
CmoCh08G009610Cucurbita moschata (Rifu)cmocmoB230
CmoCh08G009610Cucurbita moschata (Rifu)cmocmoB233
CmoCh08G009610Cucurbita moschata (Rifu)cmocmoB310
CmoCh08G009610Cucurbita moschata (Rifu)cmocmoB484
CmoCh08G009610Cucumber (Gy14) v1cgycmoB0719
CmoCh08G009610Cucurbita maxima (Rimu)cmacmoB279
CmoCh08G009610Cucurbita maxima (Rimu)cmacmoB365
CmoCh08G009610Cucurbita maxima (Rimu)cmacmoB837
CmoCh08G009610Watermelon (Charleston Gray)cmowcgB792
CmoCh08G009610Watermelon (97103) v1cmowmB856
CmoCh08G009610Cucurbita pepo (Zucchini)cmocpeB833
CmoCh08G009610Cucurbita pepo (Zucchini)cmocpeB860