CmaCh17G000450 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G000450
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Chloroplast 50S ribosomal protein L3
Location	Cma_Chr17 : 208726 .. 210458 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACGGGTCATTCCTCTCGACCCCAGTTCTTCTTCTTCTTCCTCATCATATGAATCACTGAACCCAGAGAAGCAGAAATGTCCGTCATATCAATTTCATCAGCTTCAACCTCTAAAAGACATCCAATTTTCACTAACAATGCTTCTTCTTCGTCACCATCTTCATCTCTGAAACTAAGAACTTCTTTCCTCGCCCTTCCTCTCAAATCCCACCGGAACAACAACGTCCGTTTCCAATTTCCGAGGCCAAGAACCACTAGACGCCCTAACGATGGCCTTTCGGTGTGTATGAGCATGGAGGCCGGCATTGGCGTTATGGCTACCAAGCTCGGTATGATGAGCTTCTTCGAGCCGGACGGCAAGGTCGTCCCTGTGACGGTGGTCGGTTTCAAGGAAGGCAATATCGTCACGCAGATTAAGACGGAGGCGACCGACGGCTACAGTGCCGTTCAGGTTGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAACCGGAAATGGGACATCTCCAGAAAGCTGGTGCGATTCCTATGCGCCACTTGCAGGAGTTTCGTCTTGAGTCTATTGATGGATTTGAGCCCAATCAGCGCCTGGTTTTTAATGAACTTTTCAAGGAGGGCGACCTGGTTGATGTCTCGGGCACTACGATTGGAAAGGGTTTTCAAGGTTTGTGTTTCTTGCTTACTCTGTTTGAAGTCTGTGTTTAATTCATTGGCGAAATTGCACTTGGTTTTCTGTTTTTCTTGGAGCTTCTGGTTGTTGGAGATGAATTTAGGCATCCTCAGGATGGATTTAGCATGAATTTTCATTCATTTTTTTGCTGTTTTGAATCCACAATGGCATATACAATTCCAAAGCCTGAACTAGTCTTCGAAGTCCAGATGTAAATTGTAGCCTAAATTGTAAACCATACTTCTACATTTACCTTTCATAAATGTTTCAAGTCTCCTTGTGCAATTTTTTTTTTAGAATTTTAGACAATTGGGATATGGAATGGTGTGGAAGTGGCGTAAAATGGTGCAGTTATTCTATGTCTAACTATTTTAAGTCTCAATTTTTGTTCGAAATTCATTTCTACTCTAAGATTATATTTATGAAAAGTAAGGGTAATATTGCCTTGAAACAATATCTTTTTATAATTTAACCAAAATTTTAATCATTTGATGTTCTCCACTTCCTTACAGCAGTACTCTCTAACTGGTTTCTTGTAACCTTCTCCCTCTTCTAATTCTTCTTCAGGTGGAATCAAGAGGCACAACTTCAAAAGGGGTCCGATGACCCATGGTTCCAAGAGCCACAGAGCACTTGGATCGATCGGTGCAGGAACTACACCGGGGCGTGTTTACAAGGGGAAGAAAATGCCTGGAAGGATGGGAGGAACTAAGAGAAAGATCAGAAAGCTCAAGATTGTAAAGATTGATGATGACCTTAATGTTGTGATGATCAAAGGCGCCGTCCCAGGTAAGCCAGGAAACCTTCTTCGAATAGCTCCTGCTAAGATAGTAGGAAAGAACATTCCCAAGAACTAGCTTTAGCTCATCTCTTGGAATTGTTTTCTTTTCTCAATTCTTTTTTGTTTCTTGAACTGATGCAACTCTTTTACTGGTTATTTGTGTTATGATTAGATAACGATTGAGTTCTCTAGAAAATGTTTGATCCATTACCATTTTTCATTACTTGGTGATTACAAGCAATGAGCTGCGTTCATCTATTGATAAAATTTTGTTCTTATT

mRNA sequence

AAACGGGTCATTCCTCTCGACCCCAGTTCTTCTTCTTCTTCCTCATCATATGAATCACTGAACCCAGAGAAGCAGAAATGTCCGTCATATCAATTTCATCAGCTTCAACCTCTAAAAGACATCCAATTTTCACTAACAATGCTTCTTCTTCGTCACCATCTTCATCTCTGAAACTAAGAACTTCTTTCCTCGCCCTTCCTCTCAAATCCCACCGGAACAACAACGTCCGTTTCCAATTTCCGAGGCCAAGAACCACTAGACGCCCTAACGATGGCCTTTCGGTGTGTATGAGCATGGAGGCCGGCATTGGCGTTATGGCTACCAAGCTCGGTATGATGAGCTTCTTCGAGCCGGACGGCAAGGTCGTCCCTGTGACGGTGGTCGGTTTCAAGGAAGGCAATATCGTCACGCAGATTAAGACGGAGGCGACCGACGGCTACAGTGCCGTTCAGGTTGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAACCGGAAATGGGACATCTCCAGAAAGCTGGTGCGATTCCTATGCGCCACTTGCAGGAGTTTCGTCTTGAGTCTATTGATGGATTTGAGCCCAATCAGCGCCTGGTTTTTAATGAACTTTTCAAGGAGGGCGACCTGGTTGATGTCTCGGGCACTACGATTGGAAAGGGTTTTCAAGGTGGAATCAAGAGGCACAACTTCAAAAGGGGTCCGATGACCCATGGTTCCAAGAGCCACAGAGCACTTGGATCGATCGGTGCAGGAACTACACCGGGGCGTGTTTACAAGGGGAAGAAAATGCCTGGAAGGATGGGAGGAACTAAGAGAAAGATCAGAAAGCTCAAGATTGTAAAGATTGATGATGACCTTAATGTTGTGATGATCAAAGGCGCCGTCCCAGGTAAGCCAGGAAACCTTCTTCGAATAGCTCCTGCTAAGATAGTAGGAAAGAACATTCCCAAGAACTAGCTTTAGCTCATCTCTTGGAATTGTTTTCTTTTCTCAATTCTTTTTTGTTTCTTGAACTGATGCAACTCTTTTACTGGTTATTTGTGTTATGATTAGATAACGATTGAGTTCTCTAGAAAATGTTTGATCCATTACCATTTTTCATTACTTGGTGATTACAAGCAATGAGCTGCGTTCATCTATTGATAAAATTTTGTTCTTATT

Coding sequence (CDS)

ATGTCCGTCATATCAATTTCATCAGCTTCAACCTCTAAAAGACATCCAATTTTCACTAACAATGCTTCTTCTTCGTCACCATCTTCATCTCTGAAACTAAGAACTTCTTTCCTCGCCCTTCCTCTCAAATCCCACCGGAACAACAACGTCCGTTTCCAATTTCCGAGGCCAAGAACCACTAGACGCCCTAACGATGGCCTTTCGGTGTGTATGAGCATGGAGGCCGGCATTGGCGTTATGGCTACCAAGCTCGGTATGATGAGCTTCTTCGAGCCGGACGGCAAGGTCGTCCCTGTGACGGTGGTCGGTTTCAAGGAAGGCAATATCGTCACGCAGATTAAGACGGAGGCGACCGACGGCTACAGTGCCGTTCAGGTTGGGTACCGTAGGGTTAGGGATCGGAAATTGACGAAACCGGAAATGGGACATCTCCAGAAAGCTGGTGCGATTCCTATGCGCCACTTGCAGGAGTTTCGTCTTGAGTCTATTGATGGATTTGAGCCCAATCAGCGCCTGGTTTTTAATGAACTTTTCAAGGAGGGCGACCTGGTTGATGTCTCGGGCACTACGATTGGAAAGGGTTTTCAAGGTGGAATCAAGAGGCACAACTTCAAAAGGGGTCCGATGACCCATGGTTCCAAGAGCCACAGAGCACTTGGATCGATCGGTGCAGGAACTACACCGGGGCGTGTTTACAAGGGGAAGAAAATGCCTGGAAGGATGGGAGGAACTAAGAGAAAGATCAGAAAGCTCAAGATTGTAAAGATTGATGATGACCTTAATGTTGTGATGATCAAAGGCGCCGTCCCAGGTAAGCCAGGAAACCTTCTTCGAATAGCTCCTGCTAAGATAGTAGGAAAGAACATTCCCAAGAACTAG

Protein sequence

MSVISISSASTSKRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN

Homology

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BLAST of CmaCh17G000450 vs. Swiss-Prot
Match: RK3_TOBAC (50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum GN=RPL3 PE=2 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 4.3e-110
Identity = 207/266 (77.82%), Postives = 230/266 (86.47%), Query Frame = 1


Query: 28  SSSLKLRTSFL-ALPLKSHRNNNVRFQFPRPRTTRRPNDGLSVCMSMEAGIGVMATKLGM 87
           ++ L LR+ FL  LPL++ + +       +P +       +S   S+EAG+GVMATKLGM
Sbjct: 3   TTPLTLRSPFLHRLPLRALKTH-------KPTSLHISKSSISA--SLEAGVGVMATKLGM 62

Query: 88  MSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDGYSAVQVGYRRVRDRKLTKPEMGHLQK 147
           MSFFE  G VVPVTVVGF+EGNIVTQIKTEATDGY+AVQVGYRRVRDRKLTKPEMGHL+K
Sbjct: 63  MSFFEESGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRVRDRKLTKPEMGHLEK 122

Query: 148 AGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKR 207
           +G IP+RHLQEFRL+SIDGFE  Q+L F ELFKEGDLVDVSGTTIGKGFQGGIKRHNFKR
Sbjct: 123 SGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKR 182

Query: 208 GPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDDLNVVMIK 267
           G MTHGSKSHR LGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDD LN++MIK
Sbjct: 183 GQMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDQLNIIMIK 242

Query: 268 GAVPGKPGNLLRIAPAKIVGKNIPKN 293
           GA+PGKPGNLLRIAPAKIVGKNIPK+
Sbjct: 243 GALPGKPGNLLRIAPAKIVGKNIPKS 259

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BLAST of CmaCh17G000450 vs. Swiss-Prot
Match: RK3A_ARATH (50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana GN=RPL3A PE=2 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 1.8e-108
Identity = 195/230 (84.78%), Postives = 210/230 (91.30%), Query Frame = 1


Query: 63  PNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDGYS 122
           P     V  SMEAGIGVM +KLGMMSFFE DG VVPVTVVGF+EGNIVTQIKT ATDGY 
Sbjct: 42  PKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYD 101

Query: 123 AVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKEGD 182
           AVQ+GYRRVRD+KLTKPE GHLQKAG IPMRHLQEFRL +I+GFEPNQ+LVF+E+FKEGD
Sbjct: 102 AVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGD 161

Query: 183 LVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 242
           LVDV+GTTIGKGFQGGIKRH+FKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 162 LVDVAGTTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 221

Query: 243 GTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293
           GT+ KIRKLKIVK+D +LNVVMIKGA+PGKPGNLLRI PAKIVG NIPKN
Sbjct: 222 GTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

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BLAST of CmaCh17G000450 vs. Swiss-Prot
Match: RL3_SYNP2 (50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplC PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.1e-64
Identity = 122/212 (57.55%), Postives = 163/212 (76.89%), Query Frame = 1


Query: 77  IGVMATKLGMMSFFEPD-GKVVPVTVVGFKEGNIVTQIKTEATDGYSAVQVGYRRVRDRK 136
           +G++ TKLGM   F+ + G  +PVTVV       VTQIKT  TDGY++VQ+GY  V+++ 
Sbjct: 3   LGILGTKLGMTQIFDNETGTAIPVTVVQAGPCT-VTQIKTSETDGYTSVQIGYGDVKEKN 62

Query: 137 LTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGF 196
           LTKP++GHL+KA A P+RHL+E+RL+ + G+E  Q +  N +F+ G +VDVSG TIG+GF
Sbjct: 63  LTKPQLGHLKKADAAPLRHLKEYRLDDVSGYELGQAITAN-IFEAGQVVDVSGNTIGRGF 122

Query: 197 QGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVK 256
            G  KRHNFKRG MTHGSK+HR  GS GAGTTPGRVY GK+M GR GGTK  +RKL++V+
Sbjct: 123 AGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTKITVRKLEVVR 182

Query: 257 IDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGK 288
           +D++ N+++IKGA+PGK GNLL IAP+ IVG+
Sbjct: 183 VDEEKNLLLIKGAIPGKAGNLLSIAPSNIVGQ 212

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BLAST of CmaCh17G000450 vs. Swiss-Prot
Match: RL3_ACAM1 (50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) GN=rplC PE=3 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 3.6e-64
Identity = 121/213 (56.81%), Postives = 162/213 (76.06%), Query Frame = 1


Query: 77  IGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNI-VTQIKTEATDGYSAVQVGYRRVRDRK 136
           +G++ TKLGM   F+  G+ +PVTVV  + G   VTQIKT  TDGY+A+Q+GY    ++ 
Sbjct: 3   VGILGTKLGMTQVFDEAGRAIPVTVV--QAGPCPVTQIKTAQTDGYTAIQIGYGSTTEKA 62

Query: 137 LTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGF 196
           LT+PE+GHL+K+G+ P+RHLQE+RL  +  +E  Q  +  +LF EG LVD+SGT+IG+GF
Sbjct: 63  LTRPELGHLKKSGSTPVRHLQEYRLADVSEYELGQS-ISADLFSEGQLVDISGTSIGRGF 122

Query: 197 QGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVK 256
            G  KRHNF+RGPM HGSK+HRA GS GAGTTPGR+Y GK+M G+MG  K+ IRKL +V+
Sbjct: 123 AGYQKRHNFRRGPMGHGSKNHRAPGSTGAGTTPGRIYPGKRMAGQMGNVKKTIRKLTVVR 182

Query: 257 IDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKN 289
           +D + NV++IKG+VPGKPG LL I PA IVG++
Sbjct: 183 VDAERNVLLIKGSVPGKPGALLNIQPATIVGES 212

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BLAST of CmaCh17G000450 vs. Swiss-Prot
Match: RL3_CYAP7 (50S ribosomal protein L3 OS=Cyanothece sp. (strain PCC 7424) GN=rplC PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 2.0e-62
Identity = 121/212 (57.08%), Postives = 160/212 (75.47%), Query Frame = 1


Query: 77  IGVMATKLGMMSFFEPD-GKVVPVTVVGFKEGNIVTQIKTEATDGYSAVQVGYRRVRDRK 136
           +G++ TKLGM   F+ + G  +PVTV+      I TQ+KT ATDGY+++Q+GY  V+++ 
Sbjct: 3   VGILGTKLGMTQIFDKETGIAIPVTVIHAGPCPI-TQVKTPATDGYNSIQIGYGEVKEKA 62

Query: 137 LTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGF 196
           L KP++GHL+K+ + P+RHL+E+RLE+   ++    +   +LFK GDLVDV+G TIG+GF
Sbjct: 63  LNKPKLGHLKKSASTPVRHLKEYRLENAADYQLGDGIKV-DLFKPGDLVDVAGKTIGRGF 122

Query: 197 QGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVK 256
            G  KRHNFKRG MTHGSK+HR  GS GAGTTPGRVY GK+M GR GGT+  IRKL +V+
Sbjct: 123 AGYQKRHNFKRGSMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTQVTIRKLTVVQ 182

Query: 257 IDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGK 288
           ID + N+++IKGAVPGKPGNLL I PAK VGK
Sbjct: 183 IDTERNLILIKGAVPGKPGNLLSITPAKTVGK 212

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BLAST of CmaCh17G000450 vs. TrEMBL
Match: A0A0A0K9U5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078530 PE=3 SV=1)

HSP 1 Score: 520.0 bits (1338), Expect = 1.9e-144
Identity = 266/294 (90.48%), Postives = 280/294 (95.24%), Query Frame = 1


Query: 1   MSVISISSASTSKRHPIFTNN--ASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPR 60
           MS+IS SSAS S +HPIFTNN  +SSSS SSSL LRTSFLALPLKSH  NN+RF FP   
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHNKNNLRFHFPTRP 60

Query: 61  TTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEAT 120
           TTRRP+DGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KT+AT
Sbjct: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120

Query: 121 DGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELF 180
           DGYSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRLES+D FEPNQRLVFNELF
Sbjct: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180

Query: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMP 240
           KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKKMP
Sbjct: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240

Query: 241 GRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293
           GRMGGTKRKIRKLKIVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVG+NIPK+
Sbjct: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 294

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BLAST of CmaCh17G000450 vs. TrEMBL
Match: F6I5H4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00390 PE=3 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 4.0e-115
Identity = 218/266 (81.95%), Postives = 234/266 (87.97%), Query Frame = 1


Query: 27  PSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTTRRPNDGLSVCMSMEAGIGVMATKLGM 86
           PS SL L +SF   PL++H    +R Q  R   +  P     + MSMEAG+GVMATKLGM
Sbjct: 22  PSHSLSLSSSFTLNPLQTHLQ--LRLQPFRSAKSTLP----IIRMSMEAGVGVMATKLGM 81

Query: 87  MSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDGYSAVQVGYRRVRDRKLTKPEMGHLQK 146
           MS+FEP+GKVVPVTVVGF+EGNIVTQ+KTEATDGYSAVQVGYRRVRDRKLTKPEMGHL+K
Sbjct: 82  MSYFEPEGKVVPVTVVGFREGNIVTQVKTEATDGYSAVQVGYRRVRDRKLTKPEMGHLEK 141

Query: 147 AGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKR 206
           AG IPMRHLQEFRL S+DGFEPNQ+LVF ELFKEGDLVDVSG TIGKGFQGGIKRHNF+R
Sbjct: 142 AGTIPMRHLQEFRLVSVDGFEPNQKLVFEELFKEGDLVDVSGITIGKGFQGGIKRHNFRR 201

Query: 207 GPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDDLNVVMIK 266
           GPMTHGSKSHRALGSIGAGTTPG VYKGKKMPGRMGGTK KIRKLKIVKID+DL VVMIK
Sbjct: 202 GPMTHGSKSHRALGSIGAGTTPGHVYKGKKMPGRMGGTKTKIRKLKIVKIDNDLRVVMIK 261

Query: 267 GAVPGKPGNLLRIAPAKIVGKNIPKN 293
           GAVPGKPGNLLRI PAKIVGKNIPKN
Sbjct: 262 GAVPGKPGNLLRITPAKIVGKNIPKN 281

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BLAST of CmaCh17G000450 vs. TrEMBL
Match: G7J8L6_MEDTR (50S ribosomal protein L3P OS=Medicago truncatula GN=MTR_3g118210 PE=3 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 2.6e-114
Identity = 216/270 (80.00%), Postives = 236/270 (87.41%), Query Frame = 1


Query: 23  SSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTTRRPNDGLSVCMSMEAGIGVMAT 82
           S+SS SSSL   TSF A  +K  ++             R+    + V MS+EAG+GVM T
Sbjct: 15  SNSSSSSSLSFSTSFSAQFVKLQQHQ------------RKRGGAMVVKMSLEAGVGVMGT 74

Query: 83  KLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDGYSAVQVGYRRVRDRKLTKPEMG 142
           KLGMMSFF+P+G+VVPVTVVGFKEGNIVTQIKT+ATDGY+AVQVGYRRVRDRKLTKPEMG
Sbjct: 75  KLGMMSFFQPNGEVVPVTVVGFKEGNIVTQIKTDATDGYNAVQVGYRRVRDRKLTKPEMG 134

Query: 143 HLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQGGIKRH 202
           HL+KAGAIPMRHLQEFRL+S+DGFEPNQRLVF+ELF EGDLVDVSGTTIGKGFQGGIKRH
Sbjct: 135 HLEKAGAIPMRHLQEFRLQSVDGFEPNQRLVFDELFNEGDLVDVSGTTIGKGFQGGIKRH 194

Query: 203 NFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDDLNV 262
           NFKRGPM+HGSKSHR LGSIGAGTTPGRVYKGKKMPGRMGGT RK RKLKIVKID DLNV
Sbjct: 195 NFKRGPMSHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTNRKTRKLKIVKIDKDLNV 254

Query: 263 VMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293
           +MIKGA+PGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 255 IMIKGALPGKPGNLLRIAPAKIVGKNIPKN 272

[Close]

BLAST of CmaCh17G000450 vs. TrEMBL
Match: W9R517_9ROSA (50S ribosomal protein L3-1 OS=Morus notabilis GN=L484_023807 PE=3 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 7.6e-114
Identity = 216/276 (78.26%), Postives = 232/276 (84.06%), Query Frame = 1


Query: 29  SSLKLRTSFLALPLKSHRNNNVRFQFPRP------------RTTRRPNDGLSVCMSMEAG 88
           S++ + +S   LP K   N ++R  F  P            +TT        V MSMEAG
Sbjct: 2   STMSISSSIAYLPRKPSLNCSLRSSFLSPLSLSPNATKNSLKTTSAAKRQAVVAMSMEAG 61

Query: 89  IGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDGYSAVQVGYRRVRDRKL 148
           IGVMATKLGMMSFFE DGKVVPVT+VGFKEGNIVTQ+K  ATDGY AVQVGYRRVRDRKL
Sbjct: 62  IGVMATKLGMMSFFESDGKVVPVTIVGFKEGNIVTQVKNLATDGYDAVQVGYRRVRDRKL 121

Query: 149 TKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQ 208
           TKPE GHLQKAGAIPMRHLQEFRL+S++GFEPNQ+LVF E+FKEGDLVDV+G TIGKGFQ
Sbjct: 122 TKPEFGHLQKAGAIPMRHLQEFRLQSVEGFEPNQKLVFEEIFKEGDLVDVAGITIGKGFQ 181

Query: 209 GGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKI 268
           GGIKRHNF+RGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTK KIRKLKIVKI
Sbjct: 182 GGIKRHNFRRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKLKIVKI 241

Query: 269 DDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293
           D DLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 242 DTDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 277

[Close]

BLAST of CmaCh17G000450 vs. TrEMBL
Match: A0A059CE61_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01115 PE=3 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 1.3e-113
Identity = 219/267 (82.02%), Postives = 235/267 (88.01%), Query Frame = 1


Query: 27  PSSSLKLRTSFLALPLKSHRNNNVRFQFPR-PRTTRRPNDGLSVCMSMEAGIGVMATKLG 86
           PS SL  R S   LPL++     + F+ P  PR  RRP     V MSMEAGIGVM TKLG
Sbjct: 16  PSPSLPSRLSSSFLPLQTAAAPRLSFRIPTAPR--RRP----VVAMSMEAGIGVMGTKLG 75

Query: 87  MMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDGYSAVQVGYRRVRDRKLTKPEMGHLQ 146
           MMS+FEPDG VVPVTVVGF+EGNIVTQ+KT+ATDGY AVQVGYRRVRDRKLTKPEMGHLQ
Sbjct: 76  MMSYFEPDGTVVPVTVVGFREGNIVTQVKTQATDGYDAVQVGYRRVRDRKLTKPEMGHLQ 135

Query: 147 KAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFK 206
           KAGAIPMRHLQEFRL+++DGFEPNQRLV +E+FKEG+LVDVSGTTIGKGFQGGIKRH+FK
Sbjct: 136 KAGAIPMRHLQEFRLQAVDGFEPNQRLVVDEVFKEGELVDVSGTTIGKGFQGGIKRHHFK 195

Query: 207 RGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDDLNVVMI 266
           RG MTHGSKSHR LGSIGAGTTPGRVY GKKMPGRMGGTKRKIRKLKIVKID DLNVVMI
Sbjct: 196 RGLMTHGSKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTKRKIRKLKIVKIDKDLNVVMI 255

Query: 267 KGAVPGKPGNLLRIAPAKIVGKNIPKN 293
           KGAVPGKPGNLLRIAPAKIVGKNIPK+
Sbjct: 256 KGAVPGKPGNLLRIAPAKIVGKNIPKS 276

[Close]

BLAST of CmaCh17G000450 vs. TAIR10
Match: AT2G43030.1 (AT2G43030.1 Ribosomal protein L3 family protein)

HSP 1 Score: 393.7 bits (1010), Expect = 1.0e-109
Identity = 195/230 (84.78%), Postives = 210/230 (91.30%), Query Frame = 1


Query: 63  PNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDGYS 122
           P     V  SMEAGIGVM +KLGMMSFFE DG VVPVTVVGF+EGNIVTQIKT ATDGY 
Sbjct: 42  PKTRFVVSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYD 101

Query: 123 AVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKEGD 182
           AVQ+GYRRVRD+KLTKPE GHLQKAG IPMRHLQEFRL +I+GFEPNQ+LVF+E+FKEGD
Sbjct: 102 AVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGD 161

Query: 183 LVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 242
           LVDV+GTTIGKGFQGGIKRH+FKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 162 LVDVAGTTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 221

Query: 243 GTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293
           GT+ KIRKLKIVK+D +LNVVMIKGA+PGKPGNLLRI PAKIVG NIPKN
Sbjct: 222 GTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

[Close]

BLAST of CmaCh17G000450 vs. TAIR10
Match: AT3G17465.1 (AT3G17465.1 ribosomal protein L3 plastid)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-33
Identity = 80/206 (38.83%), Postives = 123/206 (59.71%), Query Frame = 1


Query: 78  GVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDGYSAVQVGYRRVRDRKLT 137
           G++A K GM + ++  GK +P++++ + + NIV+Q+KT   +G  A+Q+G  + + + L+
Sbjct: 78  GIIAVKCGMTALWDKWGKRIPISIL-WVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLS 137

Query: 138 KPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQG 197
           K  +GH +  G    R L+EF +   D   P    +    F  G  VDV+G T GKGFQG
Sbjct: 138 KAVVGHFRAQGVPLKRKLREFPVTE-DALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQG 197

Query: 198 GIKRHNFKRGPMTHG-SKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKI 257
            +KRH F   P +HG S SHR+ GS G    PG+V+KG+KM GRMG  +R ++ + + KI
Sbjct: 198 CMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKI 257

Query: 258 DDDLNVVMIKGAVPGKPGNLLRIAPA 283
           D   N++ ++G VPG  GN + I  A
Sbjct: 258 DPARNLMWVRGQVPGAEGNFVFIKDA 281

[Close]

BLAST of CmaCh17G000450 vs. NCBI nr
Match: gi|659120254|ref|XP_008460096.1| (PREDICTED: 50S ribosomal protein L3, chloroplastic [Cucumis melo])

HSP 1 Score: 530.0 bits (1364), Expect = 2.6e-147
Identity = 271/293 (92.49%), Postives = 282/293 (96.25%), Query Frame = 1


Query: 1   MSVISISSASTSKRHPIFTNN-ASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRT 60
           MS+IS SSAS S +HPIFTNN +SSSS SSSL LRTSFLALPLKSH  NN+RF FP  RT
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRRT 60

Query: 61  TRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATD 120
           TRRP+DGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATD
Sbjct: 61  TRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATD 120

Query: 121 GYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFK 180
           GYSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRLES+DGFEPNQRLVFNELFK
Sbjct: 121 GYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELFK 180

Query: 181 EGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPG 240
           EGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKKMPG
Sbjct: 181 EGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPG 240

Query: 241 RMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293
           RMGGTKRKIRKLKIVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 RMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293

[Close]

BLAST of CmaCh17G000450 vs. NCBI nr
Match: gi|449473944|ref|XP_004154027.1| (PREDICTED: 50S ribosomal protein L3, chloroplastic [Cucumis sativus])

HSP 1 Score: 520.0 bits (1338), Expect = 2.7e-144
Identity = 266/294 (90.48%), Postives = 280/294 (95.24%), Query Frame = 1


Query: 1   MSVISISSASTSKRHPIFTNN--ASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPR 60
           MS+IS SSAS S +HPIFTNN  +SSSS SSSL LRTSFLALPLKSH  NN+RF FP   
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSSLTLRTSFLALPLKSHNKNNLRFHFPTRP 60

Query: 61  TTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEAT 120
           TTRRP+DGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KT+AT
Sbjct: 61  TTRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTDAT 120

Query: 121 DGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELF 180
           DGYSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRLES+D FEPNQRLVFNELF
Sbjct: 121 DGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDAFEPNQRLVFNELF 180

Query: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMP 240
           KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKKMP
Sbjct: 181 KEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMP 240

Query: 241 GRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293
           GRMGGTKRKIRKLKIVKID+DLNVVMIKGAVPGKPGNLLRIAPAKIVG+NIPK+
Sbjct: 241 GRMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGQNIPKS 294

[Close]

BLAST of CmaCh17G000450 vs. NCBI nr
Match: gi|1009105732|ref|XP_015888387.1| (PREDICTED: 50S ribosomal protein L3, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 424.5 bits (1090), Expect = 1.5e-115
Identity = 229/299 (76.59%), Postives = 256/299 (85.62%), Query Frame = 1


Query: 1   MSVISISSASTSKRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRP--- 60
           MS++S+SS+  S  +     N++S+   SSL L +SFL+ P     + ++  QF +    
Sbjct: 1   MSILSMSSSIHSIGYLSHKPNSASTLKRSSL-LTSSFLSPP-----STSLAAQFSKKTNF 60

Query: 61  ----RTTRRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQI 120
                T  +   G++V MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGF+EGNIVTQ+
Sbjct: 61  HVLINTKGKKRMGVTV-MSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFREGNIVTQV 120

Query: 121 KTEATDGYSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLV 180
           KT+ATDGY AVQVGYRRVRD+KLTKPE+GHL+KAGAIPMRHLQEFRL+S++GFE NQRLV
Sbjct: 121 KTQATDGYDAVQVGYRRVRDKKLTKPELGHLEKAGAIPMRHLQEFRLQSVEGFESNQRLV 180

Query: 181 FNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYK 240
           F ELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYK
Sbjct: 181 FEELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYK 240

Query: 241 GKKMPGRMGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293
           GKKMPGRMGGTKRKIRKL+IVKID DLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 GKKMPGRMGGTKRKIRKLRIVKIDSDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of CmaCh17G000450 vs. NCBI nr
Match: gi|225436243|ref|XP_002271466.1| (PREDICTED: 50S ribosomal protein L3, chloroplastic [Vitis vinifera])

HSP 1 Score: 422.5 bits (1085), Expect = 5.8e-115
Identity = 218/266 (81.95%), Postives = 234/266 (87.97%), Query Frame = 1


Query: 27  PSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTTRRPNDGLSVCMSMEAGIGVMATKLGM 86
           PS SL L +SF   PL++H    +R Q  R   +  P     + MSMEAG+GVMATKLGM
Sbjct: 22  PSHSLSLSSSFTLNPLQTHLQ--LRLQPFRSAKSTLP----IIRMSMEAGVGVMATKLGM 81

Query: 87  MSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDGYSAVQVGYRRVRDRKLTKPEMGHLQK 146
           MS+FEP+GKVVPVTVVGF+EGNIVTQ+KTEATDGYSAVQVGYRRVRDRKLTKPEMGHL+K
Sbjct: 82  MSYFEPEGKVVPVTVVGFREGNIVTQVKTEATDGYSAVQVGYRRVRDRKLTKPEMGHLEK 141

Query: 147 AGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKEGDLVDVSGTTIGKGFQGGIKRHNFKR 206
           AG IPMRHLQEFRL S+DGFEPNQ+LVF ELFKEGDLVDVSG TIGKGFQGGIKRHNF+R
Sbjct: 142 AGTIPMRHLQEFRLVSVDGFEPNQKLVFEELFKEGDLVDVSGITIGKGFQGGIKRHNFRR 201

Query: 207 GPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDDLNVVMIK 266
           GPMTHGSKSHRALGSIGAGTTPG VYKGKKMPGRMGGTK KIRKLKIVKID+DL VVMIK
Sbjct: 202 GPMTHGSKSHRALGSIGAGTTPGHVYKGKKMPGRMGGTKTKIRKLKIVKIDNDLRVVMIK 261

Query: 267 GAVPGKPGNLLRIAPAKIVGKNIPKN 293
           GAVPGKPGNLLRI PAKIVGKNIPKN
Sbjct: 262 GAVPGKPGNLLRITPAKIVGKNIPKN 281

[Close]

BLAST of CmaCh17G000450 vs. NCBI nr
Match: gi|645252634|ref|XP_008232213.1| (PREDICTED: 50S ribosomal protein L3, chloroplastic [Prunus mume])

HSP 1 Score: 421.0 bits (1081), Expect = 1.7e-114
Identity = 227/292 (77.74%), Postives = 248/292 (84.93%), Query Frame = 1


Query: 1   MSVISISSASTSKRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT 60
           MS++SIS++S+S   P    N S SS     K  +SFL  P  +H N+N       P   
Sbjct: 1   MSILSISASSSSSLLP----NVSFSSS----KCCSSFLTPP--THTNSNPFL----PIVK 60

Query: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120
            +    + V MS+EAGIGVMATKLGMMSFFEP+GKVVPVTVVGFKEGNIVTQ+KTEATDG
Sbjct: 61  SKKKKPVGVTMSVEAGIGVMATKLGMMSFFEPNGKVVPVTVVGFKEGNIVTQVKTEATDG 120

Query: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKE 180
           Y AVQVGYRRVRDRKLTKPEMGHLQKAG+IP+RHLQEFRL+SIDGFEPNQ+L F+ELF E
Sbjct: 121 YDAVQVGYRRVRDRKLTKPEMGHLQKAGSIPLRHLQEFRLQSIDGFEPNQKLSFDELFNE 180

Query: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240
           GD+VDVSGTTIGKGFQGGIKRHNFKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR
Sbjct: 181 GDIVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240

Query: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293
           MGGTK KIRKLKIVKID DLNVVMIKGA+PGKPGNLLRIAPAKIVGKNIPK+
Sbjct: 241 MGGTKTKIRKLKIVKIDKDLNVVMIKGALPGKPGNLLRIAPAKIVGKNIPKS 278

The following BLAST results are available for this feature:

BLAST of CmaCh17G000450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK3_TOBAC	4.3e-110	77.82	50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum GN=RPL3 ...	[more]
RK3A_ARATH	1.8e-108	84.78	50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana GN=RPL3A PE=2 ...	[more]
RL3_SYNP2	2.1e-64	57.55	50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR...	[more]
RL3_ACAM1	3.6e-64	56.81	50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) GN=rplC PE=...	[more]
RL3_CYAP7	2.0e-62	57.08	50S ribosomal protein L3 OS=Cyanothece sp. (strain PCC 7424) GN=rplC PE=3 SV=1	[more]

BLAST of CmaCh17G000450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9U5_CUCSA	1.9e-144	90.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078530 PE=3 SV=1	[more]
F6I5H4_VITVI	4.0e-115	81.95	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00390 PE=3 SV=...	[more]
G7J8L6_MEDTR	2.6e-114	80.00	50S ribosomal protein L3P OS=Medicago truncatula GN=MTR_3g118210 PE=3 SV=1	[more]
W9R517_9ROSA	7.6e-114	78.26	50S ribosomal protein L3-1 OS=Morus notabilis GN=L484_023807 PE=3 SV=1	[more]
A0A059CE61_EUCGR	1.3e-113	82.02	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01115 PE=3 SV=1	[more]

BLAST of CmaCh17G000450 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43030.1	1.0e-109	84.78	Ribosomal protein L3 family protein	[more]
AT3G17465.1	2.0e-33	38.83	ribosomal protein L3 plastid	[more]

BLAST of CmaCh17G000450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120254\|ref\|XP_008460096.1\|	2.6e-147	92.49	PREDICTED: 50S ribosomal protein L3, chloroplastic [Cucumis melo]	[more]
gi\|449473944\|ref\|XP_004154027.1\|	2.7e-144	90.48	PREDICTED: 50S ribosomal protein L3, chloroplastic [Cucumis sativus]	[more]
gi\|1009105732\|ref\|XP_015888387.1\|	1.5e-115	76.59	PREDICTED: 50S ribosomal protein L3, chloroplastic [Ziziphus jujuba]	[more]
gi\|225436243\|ref\|XP_002271466.1\|	5.8e-115	81.95	PREDICTED: 50S ribosomal protein L3, chloroplastic [Vitis vinifera]	[more]
gi\|645252634\|ref\|XP_008232213.1\|	1.7e-114	77.74	PREDICTED: 50S ribosomal protein L3, chloroplastic [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000597	Ribosomal_L3
IPR009000	Transl_B-barrel_sf
IPR019926	Ribosomal_L3_CS
IPR019927	Ribosomal_L3_bac/org-type

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G000450.1	CmaCh17G000450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 172..258 score: 1.1
IPR009000	Translation protein, beta-barrel domain	unknown	SSF50447	Translation proteins	coord: 75..288 score: 1.06
IPR019926	Ribosomal protein L3, conserved site	PROSITE	PS00474	RIBOSOMAL_L3	coord: 178..201 scor
IPR019927	Ribosomal protein L3, bacterial/organelle-type	HAMAP	MF_01325_B	Ribosomal_L3_B	coord: 76..283 score: 35
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 58..292 score: 3.1E
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAMs	TIGR03625	TIGR03625	coord: 78..279 score: 8.1
None	No IPR available	GENE3D	G3DSA:2.40.30.10		coord: 78..107 score: 6.1E-5coord: 234..279 score: 6.
None	No IPR available	GENE3D	G3DSA:4.10.960.10		coord: 152..233 score: 2.5
None	No IPR available	PANTHER	PTHR11229:SF5	50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC	coord: 58..292 score: 3.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G000450	Cucsa.362620	Cucumber (Gy14) v1	cgycmaB0998
CmaCh17G000450	Cla006976	Watermelon (97103) v1	cmawmB353
CmaCh17G000450	Csa6G078530	Cucumber (Chinese Long) v2	cmacuB369
CmaCh17G000450	MELO3C022485	Melon (DHL92) v3.5.1	cmameB316
CmaCh17G000450	ClCG06G000570	Watermelon (Charleston Gray)	cmawcgB323
CmaCh17G000450	CSPI06G06030	Wild cucumber (PI 183967)	cmacpiB373
CmaCh17G000450	CmoCh08G009610	Cucurbita moschata (Rifu)	cmacmoB381
CmaCh17G000450	CmoCh17G000470	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G000450	Lsi09G018860	Bottle gourd (USVL1VR-Ls)	cmalsiB334
CmaCh17G000450	Cp4.1LG12g00360	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G000450	Cp4.1LG17g02990	Cucurbita pepo (Zucchini)	cmacpeB382
CmaCh17G000450	MELO3C022485.2	Melon (DHL92) v3.6.1	cmamedB368
CmaCh17G000450	CsaV3_6G006340	Cucumber (Chinese Long) v3	cmacucB0441
CmaCh17G000450	Cla97C06G109810	Watermelon (97103) v2	cmawmbB370
CmaCh17G000450	Bhi12G002270	Wax gourd	cmawgoB0465
CmaCh17G000450	CsGy6G006020	Cucumber (Gy14) v2	cgybcmaB753
CmaCh17G000450	Carg11055	Silver-seed gourd	carcmaB1487
CmaCh17G000450	Carg10188	Silver-seed gourd	carcmaB0314

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh17G000450	CmaCh08G009900	Cucurbita maxima (Rimu)	cmacmaB388

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G000450	Cucurbita pepo (Zucchini)	cmacpeB402
CmaCh17G000450	Cucurbita pepo (Zucchini)	cmacpeB411
CmaCh17G000450	Bottle gourd (USVL1VR-Ls)	cmalsiB356
CmaCh17G000450	Cucumber (Gy14) v2	cgybcmaB345
CmaCh17G000450	Melon (DHL92) v3.6.1	cmamedB398
CmaCh17G000450	Silver-seed gourd	carcmaB0876
CmaCh17G000450	Silver-seed gourd	carcmaB1321
CmaCh17G000450	Cucumber (Chinese Long) v3	cmacucB0425
CmaCh17G000450	Watermelon (97103) v2	cmawmbB366
CmaCh17G000450	Cucurbita maxima (Rimu)	cmacmaB249
CmaCh17G000450	Cucurbita maxima (Rimu)	cmacmaB373
CmaCh17G000450	Cucurbita maxima (Rimu)	cmacmaB370
CmaCh17G000450	Cucumber (Gy14) v1	cgycmaB0715
CmaCh17G000450	Cucurbita moschata (Rifu)	cmacmoB350
CmaCh17G000450	Cucurbita moschata (Rifu)	cmacmoB362
CmaCh17G000450	Cucurbita moschata (Rifu)	cmacmoB365
CmaCh17G000450	Wild cucumber (PI 183967)	cmacpiB361
CmaCh17G000450	Cucumber (Chinese Long) v2	cmacuB357
CmaCh17G000450	Melon (DHL92) v3.5.1	cmameB343
CmaCh17G000450	Watermelon (Charleston Gray)	cmawcgB319
CmaCh17G000450	Watermelon (97103) v1	cmawmB344