CmoCh08G006810 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh08G006810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionElectron carrier/ electron transporter/ iron ion binding protein
LocationCmo_Chr08 : 4363696 .. 4365075 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTTAGCCCTGTGTAAAACCTTACCCATAAGGACGGACTGACGGCGACACCAGATAAGGCCATGAAGAGCCACACAACACACAATCATGATCCTTTTTCCACTCCAGACTTCACTTCCTCAACCCCCAATTTCCCAAAATGGAGGCTCTCCATCTGGGTTCTTCCTCCTTCCGTTCCTTCAACTACATTACAAATTCCACCCACACCCTTAATCGCTTCCGCCCACTAACCTTTCGCAGATCCAAAATCAGAGCCGTCGGCACTGTTCCACAGAGCCAATCCGACACCAGTGAGCCTCAGGAGCCTCCCATGGTTGATTTCGCTTTCGTTAATGTAAGCTGTAATGTTCGATTTTTAGGGTTTATACTTAGATTATCGAGGCTAATTTATGTGTTTGTTGAAGTCTGTATTGCTTCCTGATGGAACTCCTGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAACTCAGAAACATAATGCTTGATTCCAATGTTGAATTGTATGGGCCTTATGTGAGTTTCCCAGTTCCTTAACTTCATGAATTGGGGTTTTCTTAGTTTTGATTATAATAGGGCTTTGATGTTGTTCTACAGTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGGACCTGTGGGACTTGTATGGTGGAGGTGATTTTACTGCATTAGATCATGTTCTTAATGAGGATTTAATCAATACCCTTTTCATATCTCGGTTCTGAGTCTCTGTTTGTTTGATCATTATGGCAAAAGAGTTAATCAAAATCTGATGCGTTGGCATTGAACAAGGTGAAGAAGAAATTCAATGTTAATCTTCTGACTGCAATTCTTATCATCATTTCAGATCGTTGAAGGGAAAGAGCTATTAAACCCTCGCACAGACATAGAGAAAGACAAACTTAAAAAGGTTTGTATACAGATTCCATTGCCATTAAGCTGAGAATCTCTGGCTTTTGGATTGGTTTCAATTCCTCTGAATCAAAGACATATAATGGTCTTGTTTTTCATACACAGAAACCCAAGAACTGGAGATTAGCTTGCCAAACCATTGTTGGGAAACCAGATTCCAGGGGGATGGTAATGAGTAGAAATTTGATTGATTGATTGATAGAACAGTGTCCTGAGTTTATTGTTTGTTTTCTTTGGATGAAGGTTGCTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGTTATGAAAAAGTAGAGCTTTCAGAATCATCAGAGTCTTCAGAATCTGCATAATTTAATAACAACCTTTTGTTTTACCCATCAGAGTCAGCTGAGATGATTGAGCTACGGACATTAAAGCTAAGCTCCTTGCCGCCGCTGCATTAACAATGTAATTATTCCTCGTTTAATTCAGTTTGTCCCC

mRNA sequence

CCTTTAGCCCTGTGTAAAACCTTACCCATAAGGACGGACTGACGGCGACACCAGATAAGGCCATGAAGAGCCACACAACACACAATCATGATCCTTTTTCCACTCCAGACTTCACTTCCTCAACCCCCAATTTCCCAAAATGGAGGCTCTCCATCTGGGTTCTTCCTCCTTCCGTTCCTTCAACTACATTACAAATTCCACCCACACCCTTAATCGCTTCCGCCCACTAACCTTTCGCAGATCCAAAATCAGAGCCGTCGGCACTGTTCCACAGAGCCAATCCGACACCAGTGAGCCTCAGGAGCCTCCCATGGTTGATTTCGCTTTCGTTAATTCTGTATTGCTTCCTGATGGAACTCCTGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAACTCAGAAACATAATGCTTGATTCCAATGTTGAATTGTATGGGCCTTATTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGGACCTGTGGGACTTGTATGGTGGAGATCGTTGAAGGGAAAGAGCTATTAAACCCTCGCACAGACATAGAGAAAGACAAACTTAAAAAGAAACCCAAGAACTGGAGATTAGCTTGCCAAACCATTGTTGGGAAACCAGATTCCAGGGGGATGGTTGCTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGTTATGAAAAAGTAGAGCTTTCAGAATCATCAGAGTCTTCAGAATCTGCATAATTTAATAACAACCTTTTGTTTTACCCATCAGAGTCAGCTGAGATGATTGAGCTACGGACATTAAAGCTAAGCTCCTTGCCGCCGCTGCATTAACAATGTAATTATTCCTCGTTTAATTCAGTTTGTCCCC

Coding sequence (CDS)

ATGGAGGCTCTCCATCTGGGTTCTTCCTCCTTCCGTTCCTTCAACTACATTACAAATTCCACCCACACCCTTAATCGCTTCCGCCCACTAACCTTTCGCAGATCCAAAATCAGAGCCGTCGGCACTGTTCCACAGAGCCAATCCGACACCAGTGAGCCTCAGGAGCCTCCCATGGTTGATTTCGCTTTCGTTAATTCTGTATTGCTTCCTGATGGAACTCCTGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAACTCAGAAACATAATGCTTGATTCCAATGTTGAATTGTATGGGCCTTATTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGGACCTGTGGGACTTGTATGGTGGAGATCGTTGAAGGGAAAGAGCTATTAAACCCTCGCACAGACATAGAGAAAGACAAACTTAAAAAGAAACCCAAGAACTGGAGATTAGCTTGCCAAACCATTGTTGGGAAACCAGATTCCAGGGGGATGGTTGCTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGTTATGAAAAAGTAGAGCTTTCAGAATCATCAGAGTCTTCAGAATCTGCATAA
Homology
[Close]
BLAST of CmoCh08G006810 vs. Swiss-Prot
Match: PNSB3_ARATH (Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana GN=PNSB3 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.3e-62
Identity = 113/150 (75.33%), Postives = 125/150 (83.33%), Query Frame = 1 

Query: 33  RRSKIRAVGTVPQSQSDTS-EPQEPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIM 92
           R   +RA+ T P SQ   + EP EPP VDFAFV+SVLLPDGTPDVH+RRA GGQKLR+IM
Sbjct: 43  RTKTVRAISTAPASQPPAADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIM 102

Query: 93  LDSNVELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLAC 152
           LDSN+ELYGPYS+ L NCAG GTC TCMVEIV GKELLNPRTDIEK+KLK+KPKNWRLAC
Sbjct: 103 LDSNIELYGPYSKPLSNCAGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLAC 162

Query: 153 QTIVGKPDSRGMVAVQQLPEWKAHEWGYEK 182
           QT VG PDS G+V +QQLPEWKAHEW   K
Sbjct: 163 QTNVGNPDSTGLVVIQQLPEWKAHEWNIPK 192

[Close]
BLAST of CmoCh08G006810 vs. TrEMBL
Match: A0A0A0KC78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447110 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.8e-95
Identity = 169/197 (85.79%), Postives = 185/197 (93.91%), Query Frame = 1 

Query: 1   MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQ 60
           MEALHLG      SSSFRSFNYITNS+HTL RFRPLTFRR+++RAVGTVPQSQS+ ++P+
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 61  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 120
           EPP+VD AFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSN++LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLK+KPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 192
           HEWGYE+VELS+SSES+
Sbjct: 181 HEWGYEEVELSDSSEST 197

[Close]
BLAST of CmoCh08G006810 vs. TrEMBL
Match: A0A061GCI5_THECC (NDH-dependent cyclic electron flow 1 isoform 1 OS=Theobroma cacao GN=TCM_028838 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.9e-69
Identity = 126/173 (72.83%), Postives = 146/173 (84.39%), Query Frame = 1 

Query: 14  FNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQEPPMVDFAFVNSVLLPDGT 73
           FN+ ++S   L   R L+  R +IRAV TV +S+S   EP+EPP VDFAFV+SVLLPDGT
Sbjct: 20  FNFTSSSHKALGLSRHLSISRGRIRAVRTVLESESLAREPEEPPAVDFAFVHSVLLPDGT 79

Query: 74  PDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRT 133
           PDVHFR ACGGQKLR+IMLD+N+ELYGPY+R LLNCAGGGTCGTCMVE+VEGKELL PRT
Sbjct: 80  PDVHFRSACGGQKLRDIMLDNNIELYGPYARPLLNCAGGGTCGTCMVEVVEGKELLTPRT 139

Query: 134 DIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKAHEWGYEKVELSE 187
           D EK+KLK+KPKNWRLACQT VGKPDSRG++ +QQLPEWKAHEW YE +  SE
Sbjct: 140 DKEKEKLKRKPKNWRLACQTTVGKPDSRGLLVIQQLPEWKAHEWTYETIAPSE 192

[Close]
BLAST of CmoCh08G006810 vs. TrEMBL
Match: A0A059BU56_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03055 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 5.0e-69
Identity = 134/195 (68.72%), Postives = 157/195 (80.51%), Query Frame = 1 

Query: 1   MEALHLGSSSFRSFNYITNSTHT-------LNRFRPLT-FRRSKIRAVGTVPQSQSDTSE 60
           M +L L SS   SF+   + +H        L  FR  T F RS+IRAVGTVP+S S+T+ 
Sbjct: 1   MGSLQLNSSHLASFSLTPSFSHRSRTRRAHLRPFRSQTSFARSRIRAVGTVPESGSETAA 60

Query: 61  PQEPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGG 120
           P+EPP V+FAFV+SVLLPDGTPDVH R ACGGQKLR+IMLDS+VELYGPY+R LLNCAGG
Sbjct: 61  PEEPPCVNFAFVSSVLLPDGTPDVHLRTACGGQKLRDIMLDSDVELYGPYARPLLNCAGG 120

Query: 121 GTCGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEW 180
           GTC TC+VE+V+GKELL+P TD EK+KLKKKPKN+RLACQT VGKPDSRG+V +QQLPEW
Sbjct: 121 GTCATCLVEVVQGKELLSPLTDKEKEKLKKKPKNYRLACQTTVGKPDSRGLVVIQQLPEW 180

Query: 181 KAHEWGYEKVELSES 188
           KAHEW +EKV  SES
Sbjct: 181 KAHEWKFEKVSPSES 195

[Close]
BLAST of CmoCh08G006810 vs. TrEMBL
Match: A0A0D2UQF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G072900 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 4.2e-68
Identity = 127/171 (74.27%), Postives = 142/171 (83.04%), Query Frame = 1 

Query: 14  FNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTS--EPQEPPMVDFAFVNSVLLPD 73
           FN+ + S+ T      L F   KIRAV TVP S+S     EP EPP VDFAFV+SVLLPD
Sbjct: 21  FNFRSRSSTT-----HLRFSTPKIRAVSTVPDSESTAKDKEPDEPPAVDFAFVHSVLLPD 80

Query: 74  GTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNP 133
           GTPDVHFRRACGGQKLR+IMLD+N+ELYGPY R LLNCAGGGTCGTCMVE+VEGKELL P
Sbjct: 81  GTPDVHFRRACGGQKLRDIMLDNNMELYGPYGRPLLNCAGGGTCGTCMVEVVEGKELLTP 140

Query: 134 RTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKAHEWGYEKV 183
           RTD EK+ LKKKPKNWRLACQTIVGKPDS+G++ +QQLPEWKAHEW YEK+
Sbjct: 141 RTDKEKEHLKKKPKNWRLACQTIVGKPDSKGLLVIQQLPEWKAHEWSYEKI 186

[Close]
BLAST of CmoCh08G006810 vs. TrEMBL
Match: A0A067KZM0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06325 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 7.2e-68
Identity = 128/187 (68.45%), Postives = 145/187 (77.54%), Query Frame = 1 

Query: 1   MEALHLGSSSFRSFNYITNSTHTLNR--FRPLT---FRRSKIRAVGTVPQSQSDTSEPQE 60
           M  L L S    S      S +T      RPL+   F R KIRA+GTVP S+SD  EP+E
Sbjct: 1   MSTLQLNSYGIASLKAPHKSKYTTTHKTLRPLSHTNFSRIKIRAIGTVPDSKSDAKEPEE 60

Query: 61  PPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGTC 120
           PP V+FAFV+SVLLPDGTPDVHFR +CGG+KLR+IMLDSN+ELYGPY+R LLNC GGGTC
Sbjct: 61  PPSVNFAFVHSVLLPDGTPDVHFRTSCGGKKLRDIMLDSNIELYGPYARPLLNCGGGGTC 120

Query: 121 GTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKAH 180
           GTCMVE++ GKELLNPRTD EK  LKKKPKNWRLACQT VG PDSRG+V +QQLPEWK H
Sbjct: 121 GTCMVEVIMGKELLNPRTDKEKKILKKKPKNWRLACQTTVGNPDSRGLVVIQQLPEWKNH 180

Query: 181 EWGYEKV 183
           EW YEK+
Sbjct: 181 EWKYEKI 187

[Close]
BLAST of CmoCh08G006810 vs. TAIR10
Match: AT3G16250.1 (AT3G16250.1 NDH-dependent cyclic electron flow 1)

HSP 1 Score: 240.7 bits (613), Expect = 7.3e-64
Identity = 113/150 (75.33%), Postives = 125/150 (83.33%), Query Frame = 1 

Query: 33  RRSKIRAVGTVPQSQSDTS-EPQEPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIM 92
           R   +RA+ T P SQ   + EP EPP VDFAFV+SVLLPDGTPDVH+RRA GGQKLR+IM
Sbjct: 43  RTKTVRAISTAPASQPPAADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIM 102

Query: 93  LDSNVELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLAC 152
           LDSN+ELYGPYS+ L NCAG GTC TCMVEIV GKELLNPRTDIEK+KLK+KPKNWRLAC
Sbjct: 103 LDSNIELYGPYSKPLSNCAGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLAC 162

Query: 153 QTIVGKPDSRGMVAVQQLPEWKAHEWGYEK 182
           QT VG PDS G+V +QQLPEWKAHEW   K
Sbjct: 163 QTNVGNPDSTGLVVIQQLPEWKAHEWNIPK 192

[Close]
BLAST of CmoCh08G006810 vs. TAIR10
Match: AT4G32590.3 (AT4G32590.3 2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-26
Identity = 60/139 (43.17%), Postives = 86/139 (61.87%), Query Frame = 1 

Query: 34  RSKIRAVGTVPQSQSDTSEPQ-----EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKL- 93
           R+++ +  +   S S  S PQ      P  ++  F       DG+  V   +A  G KL 
Sbjct: 28  RARVISCNSSSSSSSQASSPQGISAVTPLEIELEFFGPKPGSDGSYPVDKAKAVSGDKLL 87

Query: 94  RNIMLDSNVELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNW 153
           R+IM D+ +ELY  Y + ++NC GGG+CGTC+VEI++G++LLN RTD E   LKKKP++W
Sbjct: 88  RSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLLNERTDTENRYLKKKPESW 147

Query: 154 RLACQTIVGKPDSRGMVAV 167
           RLACQTIVG  ++ G  A+
Sbjct: 148 RLACQTIVGNKENSGKSAL 165

[Close]
BLAST of CmoCh08G006810 vs. NCBI nr
Match: gi|449448008|ref|XP_004141758.1| (PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 356.7 bits (914), Expect = 2.6e-95
Identity = 169/197 (85.79%), Postives = 185/197 (93.91%), Query Frame = 1 

Query: 1   MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQ 60
           MEALHLG      SSSFRSFNYITNS+HTL RFRPLTFRR+++RAVGTVPQSQS+ ++P+
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 61  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 120
           EPP+VD AFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSN++LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLK+KPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 192
           HEWGYE+VELS+SSES+
Sbjct: 181 HEWGYEEVELSDSSEST 197

[Close]
BLAST of CmoCh08G006810 vs. NCBI nr
Match: gi|659124472|ref|XP_008462178.1| (PREDICTED: uncharacterized protein LOC103500602 [Cucumis melo])

HSP 1 Score: 349.0 bits (894), Expect = 5.4e-93
Identity = 166/197 (84.26%), Postives = 182/197 (92.39%), Query Frame = 1 

Query: 1   MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQ 60
           ME LHLG      SSSFRSFNYITNS+HTL RFR LTFRR+++RAVGTV QSQS+ ++P+
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 61  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 120
           EPP+VD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSN++LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 180
           CGTCMVEIVEGKELLNPRTDIEKDKLK+KPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 181 HEWGYEKVELSESSESS 192
           HEWGYE+V+LSE SES+
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]
BLAST of CmoCh08G006810 vs. NCBI nr
Match: gi|1009153334|ref|XP_015894582.1| (PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 275.0 bits (702), Expect = 9.9e-71
Identity = 129/185 (69.73%), Postives = 153/185 (82.70%), Query Frame = 1 

Query: 1   MEALHLGSSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQEPPMVD 60
           ++   L SS   +FNYITN+  TL   + L F  +KIRAV T+P S+S+ +E +EPP V+
Sbjct: 4   LQLTSLSSSLSLNFNYITNTRKTLKPSKSLRFSGAKIRAVSTIPDSESEATESEEPPSVN 63

Query: 61  FAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGTCGTCMV 120
           FAFV+SVLLPDGTPDVH R A GGQKLR+IMLDSN++LYGPY+R LLNCAGGGTC TCMV
Sbjct: 64  FAFVSSVLLPDGTPDVHLRTASGGQKLRDIMLDSNIDLYGPYARPLLNCAGGGTCATCMV 123

Query: 121 EIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKAHEWGYE 180
           E+VEGK LL PRTD EK+KLK+KPKNWRLACQTIVG+PDSRG+V +QQLPEWKAHEW YE
Sbjct: 124 EVVEGKHLLTPRTDKEKEKLKRKPKNWRLACQTIVGQPDSRGLVVIQQLPEWKAHEWKYE 183

Query: 181 KVELS 186
           KV+ S
Sbjct: 184 KVDPS 188

[Close]
BLAST of CmoCh08G006810 vs. NCBI nr
Match: gi|1009112166|ref|XP_015866850.1| (PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 274.6 bits (701), Expect = 1.3e-70
Identity = 129/180 (71.67%), Postives = 151/180 (83.89%), Query Frame = 1 

Query: 6   LGSSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQEPPMVDFAFVN 65
           L SS   +FNYITN+  TL   + L F  +KIRAV T+P S+S+ +E +EPP V+FAFV+
Sbjct: 9   LSSSLSLNFNYITNTRKTLKPSKSLRFSGAKIRAVSTIPDSESEATESEEPPSVNFAFVS 68

Query: 66  SVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGTCGTCMVEIVEG 125
           SVLLPDGTPDVH R A GGQKLR+IMLDSN++LYGPY+R LLNCAGGGTC TCMVE+VEG
Sbjct: 69  SVLLPDGTPDVHLRTASGGQKLRDIMLDSNIDLYGPYARPLLNCAGGGTCATCMVEVVEG 128

Query: 126 KELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKAHEWGYEKVELS 185
           K LL PRTD EK+KLK+KPKNWRLACQTIVG+PDSRG+V +QQLPEWKAHEW YEKV+ S
Sbjct: 129 KHLLTPRTDKEKEKLKRKPKNWRLACQTIVGQPDSRGLVVIQQLPEWKAHEWKYEKVDPS 188

[Close]
BLAST of CmoCh08G006810 vs. NCBI nr
Match: gi|658014654|ref|XP_008342650.1| (PREDICTED: uncharacterized protein LOC103405430 [Malus domestica])

HSP 1 Score: 273.1 bits (697), Expect = 3.8e-70
Identity = 139/199 (69.85%), Postives = 158/199 (79.40%), Query Frame = 1 

Query: 1   MEALHLGS--SSFRSFNY------ITNSTHTLNRFRPL-TFRRSKIRAVGTVPQSQSDTS 60
           M AL L S  SSF S  +      ITNS  TL   +PL +F R+KIRAV T  +SQS+  
Sbjct: 24  MVALQLSSCWSSFCSLPFNLINSNITNSHSTLRPSKPLISFSRAKIRAVSTSQESQSEAI 83

Query: 61  EPQEPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAG 120
           +P++PP VDFAFV+SVLLPD TPDVH R+ACGGQKLRNIMLDSN++LYGPYSR LLNCAG
Sbjct: 84  QPEQPPSVDFAFVSSVLLPDQTPDVHLRQACGGQKLRNIMLDSNIDLYGPYSRVLLNCAG 143

Query: 121 GGTCGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPE 180
           GGTCGTCMVEIV+GKELL PRTD EK+ LKKKPKNWRLACQT VGKPDSRG+V VQQLPE
Sbjct: 144 GGTCGTCMVEIVQGKELLTPRTDKEKEHLKKKPKNWRLACQTTVGKPDSRGLVVVQQLPE 203

Query: 181 WKAHEWGYEKVELSESSES 191
           WKAHEW YE+V +  +  S
Sbjct: 204 WKAHEWKYEEVLVDPNQSS 222

The following BLAST results are available for this feature:
BLAST of CmoCh08G006810 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PNSB3_ARATH1.3e-6275.33Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thali... [more]
BLAST of CmoCh08G006810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KC78_CUCSA1.8e-9585.79Uncharacterized protein OS=Cucumis sativus GN=Csa_7G447110 PE=4 SV=1[more]
A0A061GCI5_THECC2.9e-6972.83NDH-dependent cyclic electron flow 1 isoform 1 OS=Theobroma cacao GN=TCM_028838 ... [more]
A0A059BU56_EUCGR5.0e-6968.72Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03055 PE=4 SV=1[more]
A0A0D2UQF0_GOSRA4.2e-6874.27Uncharacterized protein OS=Gossypium raimondii GN=B456_011G072900 PE=4 SV=1[more]
A0A067KZM0_JATCU7.2e-6868.45Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06325 PE=4 SV=1[more]
BLAST of CmoCh08G006810 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G16250.17.3e-6475.33 NDH-dependent cyclic electron flow 1[more]
AT4G32590.32.7e-2643.17 2Fe-2S ferredoxin-like superfamily protein[more]
BLAST of CmoCh08G006810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449448008|ref|XP_004141758.1|2.6e-9585.79PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis ... [more]
gi|659124472|ref|XP_008462178.1|5.4e-9384.26PREDICTED: uncharacterized protein LOC103500602 [Cucumis melo][more]
gi|1009153334|ref|XP_015894582.1|9.9e-7169.73PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like [Ziz... [more]
gi|1009112166|ref|XP_015866850.1|1.3e-7071.67PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic-like [Ziz... [more]
gi|658014654|ref|XP_008342650.1|3.8e-7069.85PREDICTED: uncharacterized protein LOC103405430 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0010412Fe-2S_ferredoxin-type
IPR012675Beta-grasp_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron carrier activity
GO:0051536iron-sulfur cluster binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component GO:0005575 cellular_component
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh08G006810.1CmoCh08G006810.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainPFAMPF00111Fer2coord: 107..155
score: 7.7
IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainunknownSSF542922Fe-2S ferredoxin-likecoord: 75..157
score: 4.58
IPR012675Beta-grasp domainGENE3DG3DSA:3.10.20.30coord: 77..157
score: 1.9
NoneNo IPR availablePANTHERPTHR23426FERREDOXIN/ADRENODOXINcoord: 33..188
score: 8.7E
NoneNo IPR availablePANTHERPTHR23426:SF27SUBFAMILY NOT NAMEDcoord: 33..188
score: 8.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh08G006810CmaCh08G007170Cucurbita maxima (Rimu)cmacmoB912
CmoCh08G006810Cp4.1LG17g05590Cucurbita pepo (Zucchini)cmocpeB853
CmoCh08G006810Carg18779Silver-seed gourdcarcmoB1018
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh08G006810Cucurbita pepo (Zucchini)cmocpeB839
CmoCh08G006810Cucurbita pepo (Zucchini)cmocpeB854
CmoCh08G006810Cucurbita pepo (Zucchini)cmocpeB863
CmoCh08G006810Bottle gourd (USVL1VR-Ls)cmolsiB810
CmoCh08G006810Bottle gourd (USVL1VR-Ls)cmolsiB829
CmoCh08G006810Cucumber (Gy14) v2cgybcmoB429
CmoCh08G006810Cucumber (Gy14) v2cgybcmoB956
CmoCh08G006810Melon (DHL92) v3.6.1cmomedB914
CmoCh08G006810Melon (DHL92) v3.6.1cmomedB930
CmoCh08G006810Silver-seed gourdcarcmoB0169
CmoCh08G006810Silver-seed gourdcarcmoB0180
CmoCh08G006810Silver-seed gourdcarcmoB0289
CmoCh08G006810Silver-seed gourdcarcmoB1379
CmoCh08G006810Cucumber (Chinese Long) v3cmocucB1042
CmoCh08G006810Cucumber (Chinese Long) v3cmocucB1067
CmoCh08G006810Watermelon (97103) v2cmowmbB895
CmoCh08G006810Watermelon (97103) v2cmowmbB902
CmoCh08G006810Watermelon (97103) v2cmowmbB918
CmoCh08G006810Wax gourdcmowgoB1108
CmoCh08G006810Wax gourdcmowgoB1119
CmoCh08G006810Cucurbita moschata (Rifu)cmocmoB134
CmoCh08G006810Cucurbita moschata (Rifu)cmocmoB234
CmoCh08G006810Cucurbita moschata (Rifu)cmocmoB320
CmoCh08G006810Cucurbita moschata (Rifu)cmocmoB379
CmoCh08G006810Cucumber (Gy14) v1cgycmoB0989
CmoCh08G006810Cucurbita maxima (Rimu)cmacmoB280
CmoCh08G006810Cucurbita maxima (Rimu)cmacmoB375
CmoCh08G006810Cucurbita maxima (Rimu)cmacmoB491
CmoCh08G006810Wild cucumber (PI 183967)cmocpiB890
CmoCh08G006810Wild cucumber (PI 183967)cmocpiB914
CmoCh08G006810Cucumber (Chinese Long) v2cmocuB901
CmoCh08G006810Melon (DHL92) v3.5.1cmomeB811
CmoCh08G006810Melon (DHL92) v3.5.1cmomeB823
CmoCh08G006810Watermelon (Charleston Gray)cmowcgB787
CmoCh08G006810Watermelon (Charleston Gray)cmowcgB805
CmoCh08G006810Watermelon (97103) v1cmowmB845
CmoCh08G006810Watermelon (97103) v1cmowmB855