Carg18779 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18779
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Photosynthetic NDH subunit of subcomplex B 3 like
Location	Cucurbita_argyrosperma_scaffold_123 : 217805 .. 219698 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGGAATAGCTCAGTTGGTTAGAGCGTGTGGCTGTTAACCACAAGGTCGGAGGTTCAAGCCCTCCTTCTAGCGATTTTGTTTTTTATTTTTCTCTTTAATTAATTTCCATTCTTTGTGACACTTTCCGGTTTCTTTTTCAGGCCCATAAAACTAACATCTGTTGGAATAGCTTAGTTGGTTAGAGCGTGTGGCTGTTAACCACAAGGTCAGAGGTTTAAGCCCTCCTTCTAGCGATTTTGTTTTTTATTTTTCTCTTTAATTAATTTCCATTCTTTGTGACACTTTCCGGCTTCTTTTTCAGGCCCATAAAACTAACATTCGTTGGAACAGTTGGTTAGAGCGTGGTCATAGTTCAAAAAGCTCAGTTGGTTAGAGCGTGGTCATAGTTCAAAAATCCGCTTCTAACACTTTTACGGTAACACTTTTACGGTTGCCTTTAGCCCTGTGTAAAACCTTAGCTCAGTTGGTTAGAGCATGGTCATAGTTCAAAAATCAGCTTCTAACACTTAGGCCCTGCGTAAAACCTTACCCATAAGGACAGACGGCGACACCAGATAAGGCCATGAAGAGCCACACAACACACAATCATGATCCTTTTTCCACTCCAGACTTCACTTCCTCAACCCCCAATTTCCCAAATGGAGGCTCTCCATCTGGGTTCTTCCTCCTTCCGTTCCTTCAACTACATTACAAATTCCACCCACACCCTTAATCGCTTCCGCCCACTAACCTTTTGCAGATCCAAAATCAGAGCCGTCGGCACTGTTCCACAGAGCCAATCCGACACCAGTGAGCCTCAGGAGCCTCCCATGGTTGATTTTGCTTTTGTTAATGTAAGCTGTAATGTTCGATTTTTAGGGTTTATACTTAGATTATCGGGGCTAATTTATGTGTTTGTTGAAGTCTGTATTGCTTCCTGATGGAACTCCTGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAACTCAGAAACATAATGCTTGATTCCAATGTTGAATTGTATGGGCCTTATGTGAGTTTCCCAGTTCCTTAACTTCATGAATTGGGGTTTTCTTAGTTTTGATTATAATTGAGCTTTGATGTTGTTCTACAGTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGGACCTGTGGGACTTGTATGGTGGAGGTGATTTTACTGCATTAGATCATGTTCTTAATGAGGATTTAATCAATACCCTTTTCATATCTCGGTTCTGAATCTCTGTTTGTTTGATCATTATGGTAAAAGAGTTCATCAAAATCTGATGCGTTGGCCATTGAACAAGGTGAAGAAGAAATTCAATGTTAATCTTCTGACTGCAATTCTTTTTATCATTTCAGATCGTTGAAGGGAAAGAGCTATTAAACCCTCGCACAGACATTGAGAAAGACAAACTTAAAAAGGTTTGTATACAGATTCCATTGCCATTAAGCTGAGAATCTCTGGCTTTTTGGTTTGGTTTCAATTCCTCTGAATCAAAGGCATATAATGGTCTTGTTTTTCTTACACAGAAACCCAAGAACTGGAGATTAGCTTGCCAAACCATTGTTGGGAAGCCAGATTCCAGAGGGATGGTAATGAGTAGAAGTTTGATTGATTGATTGATAGAACAGTGTCCTGAGTTTATTGTTTGTTTTCTTTGGATGAAGGTTGCTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGTTATGAAAAAGTAGAGCTTTCAGAATCATCAGAGTCTTCAGAATCTGCTTAATTTAATAACAACCTTTTGTTTTACCCATCAGAGTCAGCTGAGATGATTGAGCTATGGACATTAAAGCTAAGCTCCTTGCCGCCGCTGTATCAACAATGTAATTATTCCTCAGTTTGTCCTCTTTTTTTGTTCTTTTTTTTG

mRNA sequence

GTTGGAATAGCTCAGTTGGTTAGAGCGTGTGGCTGTTAACCACAAGGTCGGAGGCCCATAAAACTAACATCTGTTGGAATAGCTTAGTTGTCATAGTTCAAAAAGCTCAGTTGGTTAGAGCGTGGTCATAGTTCAAAAATCCGCTTCTAACACTTTTACGGTAACACTTTTACGGTTGCCTTTAGCCCTGTGTAAAACCTTAGCTCAGTTGGTTAGAGCATGGTCATAGTTCAAAAATCAGCTTCTAACACTTAGGCCCTGCGTAAAACCTTACCCATAAGGACAGACGGCGACACCAGATAAGGCCATGAAGAGCCACACAACACACAATCATGATCCTTTTTCCACTCCAGACTTCACTTCCTCAACCCCCAATTTCCCAAATGGAGGCTCTCCATCTGGGTTCTTCCTCCTTCCGTTCCTTCAACTACATTACAAATTCCACCCACACCCTTAATCGCTTCCGCCCACTAACCTTTTGCAGATCCAAAATCAGAGCCGTCGGCACTGTTCCACAGAGCCAATCCGACACCAGTGAGCCTCAGGAGCCTCCCATGGTTGATTTTGCTTTTGTTAATTCTGTATTGCTTCCTGATGGAACTCCTGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAACTCAGAAACATAATGCTTGATTCCAATGTTGAATTGTATGGGCCTTATTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGGACCTGTGGGACTTGTATGGTGGAGATCGTTGAAGGGAAAGAGCTATTAAACCCTCGCACAGACATTGAGAAAGACAAACTTAAAAAGAAACCCAAGAACTGGAGATTAGCTTGCCAAACCATTGTTGGGAAGCCAGATTCCAGAGGGATGGTTGCTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGTTATGAAAAAGTAGAGCTTTCAGAATCATCAGAGTCTTCAGAATCTGCTTAATTTAATAACAACCTTTTGTTTTACCCATCAGAGTCAGCTGAGATGATTGAGCTATGGACATTAAAGCTAAGCTCCTTGCCGCCGCTGTATCAACAATGTAATTATTCCTCAGTTTGTCCTCTTTTTTTGTTCTTTTTTTTG

Coding sequence (CDS)

ATGATCCTTTTTCCACTCCAGACTTCACTTCCTCAACCCCCAATTTCCCAAATGGAGGCTCTCCATCTGGGTTCTTCCTCCTTCCGTTCCTTCAACTACATTACAAATTCCACCCACACCCTTAATCGCTTCCGCCCACTAACCTTTTGCAGATCCAAAATCAGAGCCGTCGGCACTGTTCCACAGAGCCAATCCGACACCAGTGAGCCTCAGGAGCCTCCCATGGTTGATTTTGCTTTTGTTAATTCTGTATTGCTTCCTGATGGAACTCCTGATGTGCACTTTCGTCGAGCATGTGGTGGGCAAAAACTCAGAAACATAATGCTTGATTCCAATGTTGAATTGTATGGGCCTTATTCGAGATTTCTGTTGAACTGTGCGGGTGGAGGGACCTGTGGGACTTGTATGGTGGAGATCGTTGAAGGGAAAGAGCTATTAAACCCTCGCACAGACATTGAGAAAGACAAACTTAAAAAGAAACCCAAGAACTGGAGATTAGCTTGCCAAACCATTGTTGGGAAGCCAGATTCCAGAGGGATGGTTGCTGTTCAACAGTTGCCTGAGTGGAAAGCTCATGAATGGGGTTATGAAAAAGTAGAGCTTTCAGAATCATCAGAGTCTTCAGAATCTGCTTAA

Protein sequence

MILFPLQTSLPQPPISQMEALHLGSSSFRSFNYITNSTHTLNRFRPLTFCRSKIRAVGTVPQSQSDTSEPQEPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKAHEWGYEKVELSESSESSESA

Homology

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BLAST of Carg18779 vs. NCBI nr
Match: XP_022964207.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita moschata] >XP_023000397.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita maxima] >XP_023514199.1 photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.4 bits (1017), Expect = 6.3e-107
Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 18  MEALHLGSSSFRSFNYITNSTHTLNRFRPLTFCRSKIRAVGTVPQSQSDTSEPQEPPMVD 77
           MEALHLGSSSFRSFNYITNSTHTLNRFRPLTF RSKIRAVGTVPQSQSDTSEPQEPPMVD
Sbjct: 1   MEALHLGSSSFRSFNYITNSTHTLNRFRPLTFRRSKIRAVGTVPQSQSDTSEPQEPPMVD 60

Query: 78  FAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGTCGTCMV 137
           FAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGTCGTCMV
Sbjct: 61  FAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGTCGTCMV 120

Query: 138 EIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKAHEWGYE 197
           EIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKAHEWGYE
Sbjct: 121 EIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKAHEWGYE 180

Query: 198 KVELSESSESSESA 212
           KVELSESSESSESA
Sbjct: 181 KVELSESSESSESA 194

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BLAST of Carg18779 vs. NCBI nr
Match: XP_022145222.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia])

HSP 1 Score: 365.2 bits (936), Expect = 1.5e-97
Identity = 177/200 (88.50%), Postives = 186/200 (93.00%), Query Frame = 0


Query: 18  MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFCRSKIRAVGTVPQSQSDTSEPQ 77
           MEA HLG      SSS RSFNYITNSTHTL R RPL F R+KIRAVGTVPQSQS+T++P+
Sbjct: 1   MEAYHLGSYRLSSSSSLRSFNYITNSTHTLKRLRPLNFRRAKIRAVGTVPQSQSETTDPE 60

Query: 78  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 137
           EPP+VDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSN+ELYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIELYGPYSRFLLNCAGGGT 120

Query: 138 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 197
           CGTCMVEIVEGKELLNPRTDIEKDKLK+KPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 198 HEWGYEKVELSESSESSESA 212
           HEWGYEKVELSESSESSESA
Sbjct: 181 HEWGYEKVELSESSESSESA 200

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BLAST of Carg18779 vs. NCBI nr
Match: XP_004141758.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis sativus] >KGN45396.1 hypothetical protein Csa_7G447110 [Cucumis sativus])

HSP 1 Score: 354.4 bits (908), Expect = 2.7e-94
Identity = 168/197 (85.28%), Postives = 184/197 (93.40%), Query Frame = 0


Query: 18  MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFCRSKIRAVGTVPQSQSDTSEPQ 77
           MEALHLG      SSSFRSFNYITNS+HTL RFRPLTF R+++RAVGTVPQSQS+ ++P+
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 78  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 137
           EPP+VD AFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSN++LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 138 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 197
           CGTCMVEIVEGKELLNPRTDIEKDKLK+KPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 198 HEWGYEKVELSESSESS 209
           HEWGYE+VELS+SSES+
Sbjct: 181 HEWGYEEVELSDSSEST 197

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BLAST of Carg18779 vs. NCBI nr
Match: XP_008462178.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis melo])

HSP 1 Score: 346.7 bits (888), Expect = 5.7e-92
Identity = 165/197 (83.76%), Postives = 181/197 (91.88%), Query Frame = 0


Query: 18  MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFCRSKIRAVGTVPQSQSDTSEPQ 77
           ME LHLG      SSSFRSFNYITNS+HTL RFR LTF R+++RAVGTV QSQS+ ++P+
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 78  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 137
           EPP+VD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSN++LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 138 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 197
           CGTCMVEIVEGKELLNPRTDIEKDKLK+KPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 198 HEWGYEKVELSESSESS 209
           HEWGYE+V+LSE SES+
Sbjct: 181 HEWGYEEVDLSELSESA 197

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BLAST of Carg18779 vs. NCBI nr
Match: XP_022724754.1 (photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Durio zibethinus])

HSP 1 Score: 283.1 bits (723), Expect = 7.7e-73
Identity = 134/192 (69.79%), Postives = 156/192 (81.25%), Query Frame = 0


Query: 18  MEALHLGSSSFRS------FNYITNSTHTLNRFRPLTFCRSKIRAVGTVPQSQSDTSEPQ 77
           M  +HL + S  +      FN+ ++S   L   R  +F R KIRA+ TVP+S+S   EP 
Sbjct: 1   MGTIHLNTHSLTTLSEPCKFNFTSSSNKVLTLSRHFSFPRGKIRALSTVPESESVAKEPD 60

Query: 78  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 137
           EPP VDFAFV+SVLLPDGTPDVHFRRACGGQKLR+IMLD+N+ELYGPY+R LLNCAGGGT
Sbjct: 61  EPPAVDFAFVHSVLLPDGTPDVHFRRACGGQKLRDIMLDNNIELYGPYARPLLNCAGGGT 120

Query: 138 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 197
           CGTCMVE+VEGKELLNPRT+ EK+KLK+KPKNWRLACQT VGKPDSRGM+ +QQLPEWKA
Sbjct: 121 CGTCMVEVVEGKELLNPRTNKEKEKLKRKPKNWRLACQTTVGKPDSRGMLVIQQLPEWKA 180

Query: 198 HEWGYEKVELSE 204
           HEW YEK+  SE
Sbjct: 181 HEWTYEKIAPSE 192

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BLAST of Carg18779 vs. TAIR10
Match: AT3G16250.1 (NDH-dependent cyclic electron flow 1)

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-63
Identity = 112/146 (76.71%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 54  IRAVGTVPQSQSDTS-EPQEPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSN 113
           +RA+ T P SQ   + EP EPP VDFAFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSN
Sbjct: 47  VRAISTAPASQPPAADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSN 106

Query: 114 VELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIV 173
           +ELYGPYS+ L NCAG GTC TCMVEIV GKELLNPRTDIEK+KLK+KPKNWRLACQT V
Sbjct: 107 IELYGPYSKPLSNCAGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNV 166

Query: 174 GKPDSRGMVAVQQLPEWKAHEWGYEK 199
           G PDS G+V +QQLPEWKAHEW   K
Sbjct: 167 GNPDSTGLVVIQQLPEWKAHEWNIPK 192

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BLAST of Carg18779 vs. TAIR10
Match: AT4G32590.3 (2Fe-2S ferredoxin-like superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 9.5e-25
Identity = 52/97 (53.61%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 88  DGTPDVHFRRACGGQK-LRNIMLDSNVELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELL 147
           DG+  V   +A  G K LR+IM D+ +ELY  Y + ++NC GGG+CGTC+VEI++G++LL
Sbjct: 70  DGSYPVDKAKAVSGDKLLRSIMQDNKIELYAAYGK-VMNCGGGGSCGTCIVEILDGRDLL 129

Query: 148 NPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAV 184
           N RTD E   LKKKP++WRLACQTIVG  ++ G  A+
Sbjct: 130 NERTDTENRYLKKKPESWRLACQTIVGNKENSGKSAL 165

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BLAST of Carg18779 vs. Swiss-Prot
Match: sp|Q9LU21|PNSB3_ARATH (Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB3 PE=2 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.5e-62
Identity = 112/146 (76.71%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 54  IRAVGTVPQSQSDTS-EPQEPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSN 113
           +RA+ T P SQ   + EP EPP VDFAFV+SVLLPDGTPDVH+RRA GGQKLR+IMLDSN
Sbjct: 47  VRAISTAPASQPPAADEPDEPPAVDFAFVHSVLLPDGTPDVHWRRANGGQKLRDIMLDSN 106

Query: 114 VELYGPYSRFLLNCAGGGTCGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIV 173
           +ELYGPYS+ L NCAG GTC TCMVEIV GKELLNPRTDIEK+KLK+KPKNWRLACQT V
Sbjct: 107 IELYGPYSKPLSNCAGVGTCATCMVEIVNGKELLNPRTDIEKEKLKRKPKNWRLACQTNV 166

Query: 174 GKPDSRGMVAVQQLPEWKAHEWGYEK 199
           G PDS G+V +QQLPEWKAHEW   K
Sbjct: 167 GNPDSTGLVVIQQLPEWKAHEWNIPK 192

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BLAST of Carg18779 vs. TrEMBL
Match: tr|A0A0A0KC78|A0A0A0KC78_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447110 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.8e-94
Identity = 168/197 (85.28%), Postives = 184/197 (93.40%), Query Frame = 0


Query: 18  MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFCRSKIRAVGTVPQSQSDTSEPQ 77
           MEALHLG      SSSFRSFNYITNS+HTL RFRPLTF R+++RAVGTVPQSQS+ ++P+
Sbjct: 1   MEALHLGSYHLLSSSSFRSFNYITNSSHTLKRFRPLTFRRTQVRAVGTVPQSQSEATDPE 60

Query: 78  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 137
           EPP+VD AFVNSVLLPDGTPDVH RRACGGQKLRNIMLDSN++LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHLRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 138 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 197
           CGTCMVEIVEGKELLNPRTDIEKDKLK+KPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 198 HEWGYEKVELSESSESS 209
           HEWGYE+VELS+SSES+
Sbjct: 181 HEWGYEEVELSDSSEST 197

[Close]

BLAST of Carg18779 vs. TrEMBL
Match: tr|A0A1S3CGA8|A0A1S3CGA8_CUCME (photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500602 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 3.8e-92
Identity = 165/197 (83.76%), Postives = 181/197 (91.88%), Query Frame = 0


Query: 18  MEALHLG------SSSFRSFNYITNSTHTLNRFRPLTFCRSKIRAVGTVPQSQSDTSEPQ 77
           ME LHLG      SSSFRSFNYITNS+HTL RFR LTF R+++RAVGTV QSQS+ ++P+
Sbjct: 1   METLHLGSYHLSSSSSFRSFNYITNSSHTLKRFRSLTFRRTQVRAVGTVSQSQSEATDPE 60

Query: 78  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 137
           EPP+VD AFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSN++LYGPYSRFLLNCAGGGT
Sbjct: 61  EPPIVDLAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNIDLYGPYSRFLLNCAGGGT 120

Query: 138 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 197
           CGTCMVEIVEGKELLNPRTDIEKDKLK+KPKNWRLACQT VGKPDSRGM+ VQQLPEWKA
Sbjct: 121 CGTCMVEIVEGKELLNPRTDIEKDKLKRKPKNWRLACQTTVGKPDSRGMLVVQQLPEWKA 180

Query: 198 HEWGYEKVELSESSESS 209
           HEWGYE+V+LSE SES+
Sbjct: 181 HEWGYEEVDLSELSESA 197

[Close]

BLAST of Carg18779 vs. TrEMBL
Match: tr|A0A2C9UZB8|A0A2C9UZB8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G036400 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 2.8e-71
Identity = 131/188 (69.68%), Postives = 149/188 (79.26%), Query Frame = 0


Query: 18  MEALHLGSSSFRSFNYITNSTHTLNRFRPL------TFCRSKIRAVGTVPQSQSDTSEPQ 77
           M  L L S    S     N   T N F+ L      +F R KIRAVGTVP+S+SD  EP+
Sbjct: 1   MATLQLNSYGLASMKAPHNLKQTTNTFKTLKPSTHSSFSRLKIRAVGTVPESKSDAKEPE 60

Query: 78  EPPMVDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGT 137
           +PP + FAFV+SVLLPDGTPDVHFR ACGGQKLR++MLDSN+ELYGPYSR LLNCAGGGT
Sbjct: 61  DPPSISFAFVHSVLLPDGTPDVHFRTACGGQKLRDVMLDSNIELYGPYSRALLNCAGGGT 120

Query: 138 CGTCMVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKA 197
           CGTCMVE++ GKELLNPRTD EK+ LKKKPKNWRLACQT VGKPDS+G+V +QQLPEWKA
Sbjct: 121 CGTCMVEVIMGKELLNPRTDKEKELLKKKPKNWRLACQTTVGKPDSKGLVVIQQLPEWKA 180

Query: 198 HEWGYEKV 200
           HEW YEK+
Sbjct: 181 HEWKYEKL 188

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BLAST of Carg18779 vs. TrEMBL
Match: tr|A0A2N9IWM7|A0A2N9IWM7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56860 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 3.7e-71
Identity = 131/194 (67.53%), Postives = 156/194 (80.41%), Query Frame = 0


Query: 17  QMEALHLGS-SSFRSFNYITNSTHTLNRFRPLTFCRSKIRAVGTVPQSQSDTSEPQEPPM 76
           Q+ +  L S S+  +FNYITNS   L   +  +F R KIRAVGT+P++QS +++P+EPP 
Sbjct: 5   QLSSYALSSFSTSLNFNYITNSHKALKTSKHPSFSRGKIRAVGTIPENQSQSTDPEEPPF 64

Query: 77  VDFAFVNSVLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGTCGTC 136
           V FAFV+SVLLPDGTPDVHFR+ACGG+KLR IMLDSNVELYGPY+R LLNC GGG CGTC
Sbjct: 65  VAFAFVSSVLLPDGTPDVHFRKACGGEKLRQIMLDSNVELYGPYARPLLNCGGGGNCGTC 124

Query: 137 MVEIVEGKELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKAHEWG 196
           MVEI++GKELL PRTD EK+KL+KKPKNWRLACQT VGK DSRG+V +QQLPEWK HEW 
Sbjct: 125 MVEIIQGKELLTPRTDKEKEKLRKKPKNWRLACQTTVGKKDSRGLVVIQQLPEWKGHEWN 184

Query: 197 YEKVELSESSESSE 210
           YE +  SE +   E
Sbjct: 185 YETISPSELAAELE 198

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BLAST of Carg18779 vs. TrEMBL
Match: tr|A0A2I4GH78|A0A2I4GH78_9ROSI (photosynthetic NDH subunit of subcomplex B 3, chloroplastic isoform X1 OS=Juglans regia OX=51240 GN=LOC109007846 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 4.8e-71
Identity = 131/180 (72.78%), Postives = 153/180 (85.00%), Query Frame = 0


Query: 25  SSSFRSFNYITNSTH-TLNRFRPLTFCRSKIRAVGTVPQSQSDTSEPQEPPMVDFAFVNS 84
           S+SF +FN++T+ +H TL   + L+F R KIRAVGT+ + +S   EP+EPP V FAFV+S
Sbjct: 15  STSF-NFNHLTHYSHKTLQISKRLSFSRGKIRAVGTISEGESQAIEPEEPPSVAFAFVSS 74

Query: 85  VLLPDGTPDVHFRRACGGQKLRNIMLDSNVELYGPYSRFLLNCAGGGTCGTCMVEIVEGK 144
           VLLPDGTPDVHFR+ACGGQKLRNIMLDSN+ELYGPY+R LLNCAGGGTCGTCMVEI++G+
Sbjct: 75  VLLPDGTPDVHFRKACGGQKLRNIMLDSNIELYGPYARALLNCAGGGTCGTCMVEIIQGE 134

Query: 145 ELLNPRTDIEKDKLKKKPKNWRLACQTIVGKPDSRGMVAVQQLPEWKAHEWGYEKVELSE 204
           ELLNPRTD EK+KLKKK KNWRLACQT VGKPDS G+V VQQLPEWK HEW YEK+   E
Sbjct: 135 ELLNPRTDKEKEKLKKKRKNWRLACQTTVGKPDSTGLVVVQQLPEWKGHEWRYEKISPEE 193

The following BLAST results are available for this feature:

BLAST of Carg18779 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964207.1	6.3e-107	99.48	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucurbita moschata]...	[more]
XP_022145222.1	1.5e-97	88.50	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Momordica charantia...	[more]
XP_004141758.1	2.7e-94	85.28	PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis ...	[more]
XP_008462178.1	5.7e-92	83.76	PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Cucumis ...	[more]
XP_022724754.1	7.7e-73	69.79	photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Durio zibethinus]	[more]

BLAST of Carg18779 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G16250.1	1.4e-63	76.71	NDH-dependent cyclic electron flow 1	[more]
AT4G32590.3	9.5e-25	53.61	2Fe-2S ferredoxin-like superfamily protein	[more]

BLAST of Carg18779 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LU21\|PNSB3_ARATH	2.5e-62	76.71	Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Carg18779 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KC78\|A0A0A0KC78_CUCSA	1.8e-94	85.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447110 PE=4 SV=1	[more]
tr\|A0A1S3CGA8\|A0A1S3CGA8_CUCME	3.8e-92	83.76	photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Cucumis melo OX=3...	[more]
tr\|A0A2C9UZB8\|A0A2C9UZB8_MANES	2.8e-71	69.68	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G036400 PE=4 SV=...	[more]
tr\|A0A2N9IWM7\|A0A2N9IWM7_FAGSY	3.7e-71	67.53	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56860 PE=4 SV=1	[more]
tr\|A0A2I4GH78\|A0A2I4GH78_9ROSI	4.8e-71	72.78	photosynthetic NDH subunit of subcomplex B 3, chloroplastic isoform X1 OS=Juglan...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051536	iron-sulfur cluster binding
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036010	2Fe-2S_ferredoxin-like_sf
IPR012675	Beta-grasp_dom_sf
IPR001041	2Fe-2S_ferredoxin-type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18779-RA	Carg18779-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 124..172 e-value: 9.3E-11 score: 41.4
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 101..172 e-value: 6.27147E-7 score: 43.9228
IPR012675	Beta-grasp domain superfamily	GENE3D	G3DSA:3.10.20.30		coord: 89..193 e-value: 3.3E-19 score: 70.6
None	No IPR available	PANTHER	PTHR23426	FERREDOXIN/ADRENODOXIN	coord: 27..204
None	No IPR available	PANTHER	PTHR23426:SF27	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 3, CHLOROPLASTIC	coord: 27..204
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	SSF54292	2Fe-2S ferredoxin-like	coord: 92..174

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18779	CmaCh08G007170	Cucurbita maxima (Rimu)	carcmaB1046
Carg18779	CmoCh08G006810	Cucurbita moschata (Rifu)	carcmoB1018
Carg18779	Cp4.1LG17g05590	Cucurbita pepo (Zucchini)	carcpeB1051

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18779	Cucurbita pepo (Zucchini)	carcpeB1049
Carg18779	Cucurbita pepo (Zucchini)	carcpeB1052
Carg18779	Cucurbita pepo (Zucchini)	carcpeB1053
Carg18779	Cucurbita pepo (Zucchini)	carcpeB1054
Carg18779	Cucurbita pepo (Zucchini)	carcpeB1055
Carg18779	Wild cucumber (PI 183967)	carcpiB0777
Carg18779	Wild cucumber (PI 183967)	carcpiB0780
Carg18779	Cucumber (Chinese Long) v2	carcuB0763
Carg18779	Cucumber (Chinese Long) v3	carcucB0780
Carg18779	Cucumber (Chinese Long) v3	carcucB0783
Carg18779	Bottle gourd (USVL1VR-Ls)	carlsiB684
Carg18779	Bottle gourd (USVL1VR-Ls)	carlsiB685
Carg18779	Melon (DHL92) v3.5.1	carmeB0742
Carg18779	Melon (DHL92) v3.5.1	carmeB0741
Carg18779	Melon (DHL92) v3.6.1	carmedB0754
Carg18779	Melon (DHL92) v3.6.1	carmedB0755
Carg18779	Watermelon (Charleston Gray)	carwcgB0722
Carg18779	Watermelon (Charleston Gray)	carwcgB0725
Carg18779	Watermelon (97103) v1	carwmB0743
Carg18779	Watermelon (97103) v1	carwmB0746
Carg18779	Watermelon (97103) v2	carwmbB0781
Carg18779	Watermelon (97103) v2	carwmbB0780
Carg18779	Watermelon (97103) v2	carwmbB0782
Carg18779	Wax gourd	carwgoB0879
Carg18779	Wax gourd	carwgoB0883
Carg18779	Silver-seed gourd	carcarB045
Carg18779	Silver-seed gourd	carcarB143
Carg18779	Silver-seed gourd	carcarB234
Carg18779	Silver-seed gourd	carcarB596
Carg18779	Cucumber (Gy14) v2	carcgybB0739
Carg18779	Cucumber (Gy14) v2	carcgybB0742
Carg18779	Cucumber (Gy14) v1	carcgyB0839
Carg18779	Cucurbita maxima (Rimu)	carcmaB1043
Carg18779	Cucurbita maxima (Rimu)	carcmaB1044
Carg18779	Cucurbita maxima (Rimu)	carcmaB1045
Carg18779	Cucurbita moschata (Rifu)	carcmoB1014
Carg18779	Cucurbita moschata (Rifu)	carcmoB1015
Carg18779	Cucurbita moschata (Rifu)	carcmoB1017