CmoCh08G006360 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G006360
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ran-binding zinc finger protein
Location	Cmo_Chr08 : 4141443 .. 4143882 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGCAAGCAAGCAAGGCCGTAAATCAATAAAGCAATTTGGTTCAATATTCTTTTGAAATCCACAGTTTGAATTATTATTATTTGCTTTAATTTCTTTACCAAGTTATTGTTTTTATTATATTTCTTCATTTATTTTTCGGCTATATAAACCACCCCCTCCATTTCCTTCTTCCATCACTCGCCTCCCTCTGCTTCACTTAGCACCGCCGTAAGAATCCCTGCTTAATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATGATTTGGTATAAATGGTGGGAATTTGAAGGTTGCCGGAGAAATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCATCTCAACTTCCAACGGCGGGAGTGCTGTCAACGCTGTGGCGAATCCAGATTCCTGGCTGACCTTGGGCTCTTTGGCGGCGGCGGCGGCGGCAGTAGAGGAAGAAGCATTTCGTCCTCCTCCTCCTCCTCGTACGGTGGAGTTGCCTCCCCGGGCTCCGACGTCCGTCCTGGAGACTGGTACTGTGGCGTTGCCAACTGTGGAACCCACAACTTTGCGAACCGGTCGAGCTGCTTCGTATGCGGCGCGTTTAAGGATGAGTCAGCAGCGACGGCTGCCAGAGGTGGGTTTGATTTTGATGTGGCGCCACGTGGATCGAGGAGCTTTGGTTTTGGAAGCAATGGCTCACGTGGTGGGTCTTCTTGGAAGTCTGGTGACTGGATTTGTTCCAGGTCATTTCTTTTTTACCCTTTTTTTTTTTTTGAATAATAGTTAATCTATTTAAAAGGTATAATATATTATAATTTACAATAATTTCTAAATCAGCTATCAAACACCCATTTTTAACCACGAAATAATAATTAATTAATTGTGTCGATGGGTCATTACAGGTCAGGATGCAACGTACATAACTTTGCGAGTAGAATGGAGTGTTTTCGATGCAATGCTCCCAGAGACTCGTTCTTCTGAAATATCGAATTTTCATCAAAATTTTCTATATTTTTCTTCGAATATAATAGTACATAGTTTAGTTCGTATCATTTTTCATTTGATTTTGATTGTAATCTCTCGAGTTAGAGTGATATTGAGTTGTATTTTAGCTTTTCTTAATCAATTTTATGGCAAGGAATTAATCTCCTTTTTAGAATAAAAAGTGTTTTTTCTCTACCAA

mRNA sequence

ATGCATGCAAGCAAGCAAGGCCGTAAATCAATAAAGCAATTTGGTTCAATATTCTTTTGAAATCCACAGTTTGAATTATTATTATTTGCTTTAATTTCTTTACCAAGTTATTGTTTTTATTATATTTCTTCATTTATTTTTCGGCTATATAAACCACCCCCTCCATTTCCTTCTTCCATCACTCGCCTCCCTCTGCTTCACTTAGCACCGCCGTTGCCGGAGAAATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCATCTCAACTTCCAACGGCGGGAGTGCTGTCAACGCTGTGGCGAATCCAGATTCCTGGCTGACCTTGGGCTCTTTGGCGGCGGCGGCGGCGGCAGTAGAGGAAGAAGCATTTCGTCCTCCTCCTCCTCCTCGTACGGTGGAGTTGCCTCCCCGGGCTCCGACGTCCGTCCTGGAGACTGGTACTGTGGCGTTGCCAACTGTGGAACCCACAACTTTGCGAACCGGTCGAGCTGCTTCGTATGCGGCGCGTTTAAGGATGAGTCAGCAGCGACGGCTGCCAGAGGTGGGTTTGATTTTGATGTGGCGCCACGTGGATCGAGGAGCTTTGGTTTTGGAAGCAATGGCTCACGTGGTGGGTCTTCTTGGAAGTCTGGTGACTGGATTTGTTCCAGGTCAGGATGCAACGTACATAACTTTGCGAGTAGAATGGAGTGTTTTCGATGCAATGCTCCCAGAGACTCGTTCTTCTGAAATATCGAATTTTCATCAAAATTTTCTATATTTTTCTTCGAATATAATAGTACATAGTTTAGTTCGTATCATTTTTCATTTGATTTTGATTGTAATCTCTCGAGTTAGAGTGATATTGAGTTGTATTTTAGCTTTTCTTAATCAATTTTATGGCAAGGAATTAATCTCCTTTTTAGAATAAAAAGTGTTTTTTCTCTACCAA

Coding sequence (CDS)

ATGAACAGGCCGGGGGATTGGAACTGCAGATCATGCCAGCATCTCAACTTCCAACGGCGGGAGTGCTGTCAACGCTGTGGCGAATCCAGATTCCTGGCTGACCTTGGGCTCTTTGGCGGCGGCGGCGGCGGCAGTAGAGGAAGAAGCATTTCGTCCTCCTCCTCCTCCTCGTACGGTGGAGTTGCCTCCCCGGGCTCCGACGTCCGTCCTGGAGACTGGTACTGTGGCGTTGCCAACTGTGGAACCCACAACTTTGCGAACCGGTCGAGCTGCTTCGTATGCGGCGCGTTTAAGGATGAGTCAGCAGCGACGGCTGCCAGAGGTGGGTTTGATTTTGATGTGGCGCCACGTGGATCGAGGAGCTTTGGTTTTGGAAGCAATGGCTCACGTGGTGGGTCTTCTTGGAAGTCTGGTGACTGGATTTGTTCCAGGTCAGGATGCAACGTACATAACTTTGCGAGTAGAATGGAGTGTTTTCGATGCAATGCTCCCAGAGACTCGTTCTTCTGA

Homology

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BLAST of CmoCh08G006360 vs. Swiss-Prot
Match: YE04_SCHPO (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.6e-06
Identity = 51/163 (31.29%), Postives = 65/163 (39.88%), Query Frame = 1


Query: 3   RPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGGVA 62
           RPGDWNC  C   NFQRR  C RC           F G         +S+++ S+     
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCS----------FPGP------THVSAATGSN---TF 402

Query: 63  SPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSRSF 122
           SP  D   G+ Y    N  +H  AN              +    + G +       SRSF
Sbjct: 403 SP--DFPYGNSY---GNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSF 462

Query: 123 GFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPR 166
           G       G   +++GDW C   GC  HNFA  + C RC A R
Sbjct: 463 G-------GNVPFRAGDWKCGSEGCGYHNFAKNVCCLRCGASR 474

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BLAST of CmoCh08G006360 vs. TrEMBL
Match: A0A0A0K718_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433230 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 8.7e-62
Identity = 129/176 (73.30%), Postives = 134/176 (76.14%), Query Frame = 1


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           MNRPGDWNCRSCQHLNFQRR+CCQRCGE +          GGG   G   S S  SSYGG
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKL---------GGGPELGVFSSRSGRSSYGG 60

Query: 61  VAS--PGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAAR---GGFDFDVA 120
             S  PGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFKDESAA+A     GGFDFD  
Sbjct: 61  GVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGGGFDFDAT 120

Query: 121 PRGSRSFGFGSNG--SRGGSS-WKSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 169
            R  RSFGFGS+   SRG SS W SGDWICSRSGCNVHNFASRMECFRCNAPRDSF
Sbjct: 121 CRAFRSFGFGSSNATSRGASSPWLSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 167

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BLAST of CmoCh08G006360 vs. TrEMBL
Match: M5X440_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012687mg PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.2e-56
Identity = 115/171 (67.25%), Postives = 126/171 (73.68%), Query Frame = 1


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           M+RPGDWNCRSCQHLNFQRR+ CQRCG+S+   D G FGG GGG           SS+ G
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKSGVDFGGFGGRGGG----------GSSF-G 60

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR 120
             S GSDVRPGDWYC  ANCG HNFA+RSSCF CGAFKD+SAA    GGFD D+ PR SR
Sbjct: 61  FMSTGSDVRPGDWYCAAANCGAHNFASRSSCFKCGAFKDDSAAGGGGGGFDSDM-PR-SR 120

Query: 121 SFGFGSNGSRGGSS---WKSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 169
            FG G  G  GG +   WKSGDWIC+R GCN HNFASRMECFRCNAPRDS+
Sbjct: 121 GFGLGLGGGAGGGARPGWKSGDWICTRLGCNEHNFASRMECFRCNAPRDSY 158

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BLAST of CmoCh08G006360 vs. TrEMBL
Match: A0A0B0PVA5_GOSAR (Zinc finger Ran-binding domain-containing 2 OS=Gossypium arboreum GN=F383_04726 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.4e-51
Identity = 112/166 (67.47%), Postives = 121/166 (72.89%), Query Frame = 1


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           M+RPGDWNCRSCQHLNFQRR+ CQRCGE R     G +GGG GGS           S+G 
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGEFRSGDHFGSYGGGRGGS-----------SFG- 60

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR 120
             + GSDVRPGDWYC   NCGTHNFA+RSSCF CGAFKDESA     GGFD DV PR SR
Sbjct: 61  -FTTGSDVRPGDWYCTAGNCGTHNFASRSSCFKCGAFKDESA-----GGFDSDV-PR-SR 120

Query: 121 SFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD 167
            FG G+      SSWKSGDWIC+RSGCN HNFASRMECFRC+APRD
Sbjct: 121 GFGGGNR-----SSWKSGDWICTRSGCNEHNFASRMECFRCSAPRD 141

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BLAST of CmoCh08G006360 vs. TrEMBL
Match: F6HX96_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g06110 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.3e-51
Identity = 107/167 (64.07%), Postives = 117/167 (70.06%), Query Frame = 1


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLA-DLGLFGGGGGGSRGRSISSSSSSSYG 60
           M+RPGDWNCRSCQH+NFQRR+ CQRCG+ +    D G FGG GG S G +          
Sbjct: 84  MSRPGDWNCRSCQHMNFQRRDSCQRCGDPKSGGGDFGSFGGRGGSSFGFT---------- 143

Query: 61  GVASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGS 120
                GSDVRPGDWYC   NCG HNFA+RS+CF CGAFKDESA     GG+D D+    S
Sbjct: 144 -----GSDVRPGDWYCNAGNCGAHNFASRSNCFKCGAFKDESA-----GGYDSDM----S 203

Query: 121 RSFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD 167
           RS GFG  G  G S WKSGDWICSRSGCN HNFASRMECFRCNAPRD
Sbjct: 204 RSRGFGFGGGSGRSGWKSGDWICSRSGCNEHNFASRMECFRCNAPRD 226

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BLAST of CmoCh08G006360 vs. TrEMBL
Match: I1K8W8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G069900 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-50
Identity = 111/170 (65.29%), Postives = 126/170 (74.12%), Query Frame = 1


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           MNRPGDWNCR+C HLNFQRRE CQRCGE R  +  G +GGG GG RG       SSS+GG
Sbjct: 1   MNRPGDWNCRTCNHLNFQRRESCQRCGEPR--SGGGDYGGGFGGGRG-------SSSFGG 60

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR 120
             + G DVRPGDWYC V NCG HNFA+RSSCF CGA K++S+A    G FD D+ PR  R
Sbjct: 61  FTT-GPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKEDSSA----GPFDVDM-PR-MR 120

Query: 121 SFGFGSNGSRGGSS---WKSGDWICSRSGCNVHNFASRMECFRCNAPRDS 168
            FGFG +G  G S+   WKSGDWIC+RSGCN HNFA+RMEC+RCNAPRDS
Sbjct: 121 PFGFGGSGGGGSSARPGWKSGDWICTRSGCNEHNFANRMECYRCNAPRDS 154

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BLAST of CmoCh08G006360 vs. TAIR10
Match: AT3G15680.1 (AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 188.7 bits (478), Expect = 2.9e-48
Identity = 102/170 (60.00%), Postives = 114/170 (67.06%), Query Frame = 1


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           M+RPGDWNCRSC HLNFQRR+ CQRCG+SR         GG GG    +    + S++G 
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGP------GGVGGLDFGNFGGRAMSAFG- 60

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFD----FDVAP 120
             + GSDVRPGDWYC V NCGTHNFA+RS+CF CG FKDE+ A    GG      FD   
Sbjct: 61  -FTTGSDVRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADI 120

Query: 121 RGSRSFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD 167
             SR  G G     G SSWKSGDWIC+R GCN HNFASRMECFRCNAPRD
Sbjct: 121 MRSRVPGNG-----GRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRD 157

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BLAST of CmoCh08G006360 vs. TAIR10
Match: AT5G25490.1 (AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 186.0 bits (471), Expect = 1.9e-47
Identity = 103/173 (59.54%), Postives = 114/173 (65.90%), Query Frame = 1


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           MNRPGDWNCR C HLNFQRR+ CQRC E R     G+      G  GR +SSS   +   
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPR---PGGISTDLLSGFGGRPVSSSFGFN--- 60

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDE---SAATAARGGFDFDVAPR 120
               G DVRPGDWYC + +CGTHNFANRSSCF CGA KDE   S+A A  G  D +V PR
Sbjct: 61  ---TGPDVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPR 120

Query: 121 GSRSFGFGSNGSRGG----SSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD 167
               FGFG + S GG    S WKSGDWIC RSGCN HNFASR ECFRCNAP++
Sbjct: 121 RGL-FGFGGSSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163

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BLAST of CmoCh08G006360 vs. TAIR10
Match: AT2G26695.1 (AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 120.6 bits (301), Expect = 9.6e-28
Identity = 64/162 (39.51%), Postives = 88/162 (54.32%), Query Frame = 1


Query: 5   GDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGGVASP 64
           GDW C +CQH NF++RE CQ+CG  +F       GG             S+  Y      
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPKF-------GG----------VDVSTYLYNR---- 65

Query: 65  GSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSRSFGF 124
            ++V  GDWYCG  NCG+HN+A+R+SC+ CG  K E           +     G++   +
Sbjct: 66  -TEVMAGDWYCGALNCGSHNYASRTSCYRCGMIKVE-----------YTEQYYGAQMVAY 125

Query: 125 GSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRD 167
           G++G+     WK+GDW+C R GC VHN+ASR ECF+C   RD
Sbjct: 126 GNDGAACPPGWKTGDWVCPRVGCGVHNYASRAECFKCKTTRD 134

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BLAST of CmoCh08G006360 vs. NCBI nr
Match: gi|700190060|gb|KGN45293.1| (hypothetical protein Csa_7G433230 [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 1.3e-61
Identity = 129/176 (73.30%), Postives = 134/176 (76.14%), Query Frame = 1


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           MNRPGDWNCRSCQHLNFQRR+CCQRCGE +          GGG   G   S S  SSYGG
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRDCCQRCGEFKL---------GGGPELGVFSSRSGRSSYGG 60

Query: 61  VAS--PGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAAR---GGFDFDVA 120
             S  PGSDVRPGDWYCGV NCGTHNFANRS+CF CGAFKDESAA+A     GGFDFD  
Sbjct: 61  GVSYSPGSDVRPGDWYCGVGNCGTHNFANRSTCFKCGAFKDESAASATAAGGGGFDFDAT 120

Query: 121 PRGSRSFGFGSNG--SRGGSS-WKSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 169
            R  RSFGFGS+   SRG SS W SGDWICSRSGCNVHNFASRMECFRCNAPRDSF
Sbjct: 121 CRAFRSFGFGSSNATSRGASSPWLSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 167

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BLAST of CmoCh08G006360 vs. NCBI nr
Match: gi|595927762|ref|XP_007215094.1| (hypothetical protein PRUPE_ppa012687mg [Prunus persica])

HSP 1 Score: 224.9 bits (572), Expect = 1.0e-55
Identity = 115/171 (67.25%), Postives = 126/171 (73.68%), Query Frame = 1


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           M+RPGDWNCRSCQHLNFQRR+ CQRCG+S+   D G FGG GGG           SS+ G
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKSGVDFGGFGGRGGG----------GSSF-G 60

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR 120
             S GSDVRPGDWYC  ANCG HNFA+RSSCF CGAFKD+SAA    GGFD D+ PR SR
Sbjct: 61  FMSTGSDVRPGDWYCAAANCGAHNFASRSSCFKCGAFKDDSAAGGGGGGFDSDM-PR-SR 120

Query: 121 SFGFGSNGSRGGSS---WKSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 169
            FG G  G  GG +   WKSGDWIC+R GCN HNFASRMECFRCNAPRDS+
Sbjct: 121 GFGLGLGGGAGGGARPGWKSGDWICTRLGCNEHNFASRMECFRCNAPRDSY 158

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BLAST of CmoCh08G006360 vs. NCBI nr
Match: gi|658043253|ref|XP_008357262.1| (PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Malus domestica])

HSP 1 Score: 211.5 bits (537), Expect = 1.2e-51
Identity = 110/175 (62.86%), Postives = 124/175 (70.86%), Query Frame = 1


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           M+RPGDWNCRSC HLNFQRR+ CQRCG+++   D G FGG GGGS           S+G 
Sbjct: 1   MSRPGDWNCRSCHHLNFQRRDSCQRCGDAKSGVDFGGFGGRGGGS-----------SFGF 60

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR 120
           + + GSDVRPGDWYC   NCG HNFA+RSSCF CGAFKD+SA +   GGFD D+ PR SR
Sbjct: 61  MTT-GSDVRPGDWYCAAGNCGAHNFASRSSCFKCGAFKDDSAISGG-GGFDSDL-PR-SR 120

Query: 121 SFGFGSNGSRGGS-------SWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 169
            FG G  G  GG         WKSGDWIC+R GCN HNFASRMECFRCNAPRDS+
Sbjct: 121 GFGLGLGGGGGGGGAGGGRPGWKSGDWICTRLGCNEHNFASRMECFRCNAPRDSY 160

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BLAST of CmoCh08G006360 vs. NCBI nr
Match: gi|694445346|ref|XP_009349121.1| (PREDICTED: transcription initiation factor TFIID subunit 15-like [Pyrus x bretschneideri])

HSP 1 Score: 211.1 bits (536), Expect = 1.5e-51
Identity = 110/175 (62.86%), Postives = 124/175 (70.86%), Query Frame = 1


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           M+RPGDWNCRSCQHLNFQRR+ CQRCG+++   D G FGG GGG           SS+G 
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDSCQRCGDAKSGVDFGGFGGRGGG-----------SSFGF 60

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR 120
           + + GSDVRPGDWYC   NCG HNFA+RSSCF CGAFKD+S  +   GGFD D+ PR SR
Sbjct: 61  MTT-GSDVRPGDWYCAAGNCGAHNFASRSSCFKCGAFKDDSGISGG-GGFDSDL-PR-SR 120

Query: 121 SFGFGSNGSRGGS-------SWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 169
            FG G  G  GG         WKSGDWIC+R GCN HNFASRMECFRCNAPRDS+
Sbjct: 121 GFGSGLGGGGGGGGAGGGRPGWKSGDWICTRLGCNEHNFASRMECFRCNAPRDSY 160

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BLAST of CmoCh08G006360 vs. NCBI nr
Match: gi|1009174419|ref|XP_015868337.1| (PREDICTED: TATA-binding protein-associated factor 2N-like [Ziziphus jujuba])

HSP 1 Score: 210.7 bits (535), Expect = 2.0e-51
Identity = 108/168 (64.29%), Postives = 119/168 (70.83%), Query Frame = 1


Query: 1   MNRPGDWNCRSCQHLNFQRRECCQRCGESRFLADLGLFGGGGGGSRGRSISSSSSSSYGG 60
           M+RPGDWNCRSCQHLNFQRRE CQRCG+ +     G FGGG GG  G        SS+G 
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRESCQRCGDPK----SGDFGGGFGGRGG--------SSFG- 60

Query: 61  VASPGSDVRPGDWYCGVANCGTHNFANRSSCFVCGAFKDESAATAARGGFDFDVAPRGSR 120
               GSDVRPGDWYC   NCG HNFA+RSSCF CGAFKD+ A     GG+D D+ PR  R
Sbjct: 61  --FTGSDVRPGDWYCSAGNCGAHNFASRSSCFKCGAFKDDGA-----GGYDCDM-PRSGR 120

Query: 121 SFGFGSNGSRGGSSWKSGDWICSRSGCNVHNFASRMECFRCNAPRDSF 169
            FG G  G  G   WKSGDWIC+RSGCN HNFASR+ECFRCNAPRDS+
Sbjct: 121 GFGLGGGGGSGRPGWKSGDWICTRSGCNEHNFASRIECFRCNAPRDSY 147

The following BLAST results are available for this feature:

BLAST of CmoCh08G006360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YE04_SCHPO	2.6e-06	31.29	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]

BLAST of CmoCh08G006360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K718_CUCSA	8.7e-62	73.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433230 PE=4 SV=1	[more]
M5X440_PRUPE	7.2e-56	67.25	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012687mg PE=4 SV=1	[more]
A0A0B0PVA5_GOSAR	2.4e-51	67.47	Zinc finger Ran-binding domain-containing 2 OS=Gossypium arboreum GN=F383_04726 ...	[more]
F6HX96_VITVI	5.3e-51	64.07	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g06110 PE=4 SV=...	[more]
I1K8W8_SOYBN	2.0e-50	65.29	Uncharacterized protein OS=Glycine max GN=GLYMA_06G069900 PE=4 SV=1	[more]

BLAST of CmoCh08G006360 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15680.1	2.9e-48	60.00	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	1.9e-47	59.54	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	9.6e-28	39.51	Ran BP2/NZF zinc finger-like superfamily protein	[more]

BLAST of CmoCh08G006360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190060\|gb\|KGN45293.1\|	1.3e-61	73.30	hypothetical protein Csa_7G433230 [Cucumis sativus]	[more]
gi\|595927762\|ref\|XP_007215094.1\|	1.0e-55	67.25	hypothetical protein PRUPE_ppa012687mg [Prunus persica]	[more]
gi\|658043253\|ref\|XP_008357262.1\|	1.2e-51	62.86	PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Malus domestica]	[more]
gi\|694445346\|ref\|XP_009349121.1\|	1.5e-51	62.86	PREDICTED: transcription initiation factor TFIID subunit 15-like [Pyrus x bretsc...	[more]
gi\|1009174419\|ref\|XP_015868337.1\|	2.0e-51	64.29	PREDICTED: TATA-binding protein-associated factor 2N-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001876	Znf_RanBP2

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G006360.1	CmoCh08G006360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	GENE3D	G3DSA:4.10.1060.10		coord: 64..101 score: 2.4E-14coord: 130..166 score: 2.0E-15coord: 3..30 score: 5.2
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 69..96 score: 6.8E-6coord: 136..165 score: 1.2
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 71..97 score: 1.6E-4coord: 138..164 score: 8.5E-8coord: 5..29 score: 0.
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26 score: -coord: 140..161 score: -coord: 73..94 scor
IPR001876	Zinc finger, RanBP2-type	PROFILE	PS50199	ZF_RANBP2_2	coord: 69..100 score: 9.879coord: 136..167 score: 10.884coord: 3..32 score: 8
IPR001876	Zinc finger, RanBP2-type	unknown	SSF90209	Ran binding protein zinc finger-like	coord: 2..31 score: 8.24E-7coord: 62..101 score: 1.96E-11coord: 129..167 score: 2.04
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..167 score: 9.8
None	No IPR available	PANTHER	PTHR23111:SF21	SUBFAMILY NOT NAMED	coord: 1..167 score: 9.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G006360	Cucsa.105250	Cucumber (Gy14) v1	cgycmoB0239
CmoCh08G006360	CmaCh08G006700	Cucurbita maxima (Rimu)	cmacmoB912
CmoCh08G006360	CmaCh01G001330	Cucurbita maxima (Rimu)	cmacmoB491
CmoCh08G006360	Cla015384	Watermelon (97103) v1	cmowmB839
CmoCh08G006360	Cla012699	Watermelon (97103) v1	cmowmB855
CmoCh08G006360	Csa7G433230	Cucumber (Chinese Long) v2	cmocuB906
CmoCh08G006360	MELO3C023401	Melon (DHL92) v3.5.1	cmomeB816
CmoCh08G006360	ClCG09G002710	Watermelon (Charleston Gray)	cmowcgB781
CmoCh08G006360	ClCG07G012800	Watermelon (Charleston Gray)	cmowcgB805
CmoCh08G006360	CSPI07G20810	Wild cucumber (PI 183967)	cmocpiB919
CmoCh08G006360	Lsi02G027290	Bottle gourd (USVL1VR-Ls)	cmolsiB814
CmoCh08G006360	Lsi07G004780	Bottle gourd (USVL1VR-Ls)	cmolsiB829
CmoCh08G006360	Cp4.1LG17g05840	Cucurbita pepo (Zucchini)	cmocpeB853
CmoCh08G006360	MELO3C023401.2	Melon (DHL92) v3.6.1	cmomedB921
CmoCh08G006360	CsaV3_7G032620	Cucumber (Chinese Long) v3	cmocucB1072
CmoCh08G006360	Cla97C09G164850	Watermelon (97103) v2	cmowmbB912
CmoCh08G006360	Cla97C07G139600	Watermelon (97103) v2	cmowmbB902
CmoCh08G006360	Bhi09G000041	Wax gourd	cmowgoB1130
CmoCh08G006360	Bhi06G001671	Wax gourd	cmowgoB1100
CmoCh08G006360	CsGy7G019050	Cucumber (Gy14) v2	cgybcmoB961
CmoCh08G006360	Carg04239	Silver-seed gourd	carcmoB0289
CmoCh08G006360	Carg06500	Silver-seed gourd	carcmoB0169
CmoCh08G006360	Carg18827	Silver-seed gourd	carcmoB1018

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh08G006360	CmoCh01G001410	Cucurbita moschata (Rifu)	cmocmoB379

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G006360	Cucurbita moschata (Rifu)	cmocmoB234
CmoCh08G006360	Cucurbita moschata (Rifu)	cmocmoB312
CmoCh08G006360	Cucurbita maxima (Rimu)	cmacmoB280
CmoCh08G006360	Cucurbita maxima (Rimu)	cmacmoB367
CmoCh08G006360	Wild cucumber (PI 183967)	cmocpiB914
CmoCh08G006360	Cucumber (Chinese Long) v2	cmocuB901
CmoCh08G006360	Melon (DHL92) v3.5.1	cmomeB811
CmoCh08G006360	Melon (DHL92) v3.5.1	cmomeB823
CmoCh08G006360	Cucurbita pepo (Zucchini)	cmocpeB835
CmoCh08G006360	Cucurbita pepo (Zucchini)	cmocpeB839
CmoCh08G006360	Cucurbita pepo (Zucchini)	cmocpeB854
CmoCh08G006360	Bottle gourd (USVL1VR-Ls)	cmolsiB810
CmoCh08G006360	Cucumber (Gy14) v2	cgybcmoB956
CmoCh08G006360	Melon (DHL92) v3.6.1	cmomedB914
CmoCh08G006360	Silver-seed gourd	carcmoB1378
CmoCh08G006360	Silver-seed gourd	carcmoB1379
CmoCh08G006360	Cucumber (Chinese Long) v3	cmocucB1067