Carg06500 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06500
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc finger (Ran-binding) family protein
Location	Cucurbita_argyrosperma_scaffold_051 : 903106 .. 903960 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACAGAAGATGAACAGACCCGGAGACTGGAACTGCACCTCCTGCCACCACTTGAACTTCCAGAGGAGGGACATCTGCCAGCGCTGCGGCGATCCCAAGACCGGCGGCGGCGGCGGCGCAAGAGCTGGGTCTGGATTCGGGTTCGCCGGGTCGGACGTCAGGCCCGGGGACTGGTACTGCAGCGTAGGCAACTGTGGAGCCCACAATTTCGCAAGCCGGTCAAGCTGCTTCAAATGTGGGGCCTTCAAAGACGACATGTCGACCTTCGACTTCGACCTTCCTCGTCCAACTCCTCGCGGAATATCCCCTTTTCCTTTCGCTACTCCCGCCCGTTCCCCTGCCTCCGCTTGGAAGTCCGGTGACTGGATTTGTGCCAGGTGTTTTTTTTTTCTTTTTTATTTTAAATATATTTTCAAATTATTTTCCATTTTAAATATTTAAAAAATATATATCACCTATTTTGACCATGAACTCTCATCCAAAAGGGTTTATAAAGATCATTCCCTAAATTAGCAGACGTGAGACTCACTCCCAAAAATCCTCAACATCTACTATTTTAATTTACCTACTATAGTAAAAAAATAATGATGAATGATGAAATTGCAGGTCGGAATGTAACGAACATAACTTTGCAAGTAGGATGGAGTGCTTCAGATGCAGTGCTCCAAGAGACTCGTACTAACAAAAACTAGCCATGTTCGAGTGCCACGTAAGTAAAAAGGAATTGTTGGGTGTATCACAATCATAAAATTAACATCTTAATTTGGGTACGTGTTTGTTTGCAGGGTTTAGGGTTCCAAGTGAGAAAATTTCAAAGAGACTTCATTCATAAACTGCACTATCTTTCTTTCTTCT

mRNA sequence

ACACAGAAGATGAACAGACCCGGAGACTGGAACTGCACCTCCTGCCACCACTTGAACTTCCAGAGGAGGGACATCTGCCAGCGCTGCGGCGATCCCAAGACCGGCGGCGGCGGCGGCGCAAGAGCTGGGTCTGGATTCGGGTTCGCCGGGTCGGACGTCAGGCCCGGGGACTGGTACTGCAGCGTAGGCAACTGTGGAGCCCACAATTTCGCAAGCCGGTCAAGCTGCTTCAAATGTGGGGCCTTCAAAGACGACATGTCGACCTTCGACTTCGACCTTCCTCGTCCAACTCCTCGCGGAATATCCCCTTTTCCTTTCGCTACTCCCGCCCGTTCCCCTGCCTCCGCTTGGAAGTCCGGTGACTGGATTTGTGCCAGGGTTTAGGGTTCCAAGTGAGAAAATTTCAAAGAGACTTCATTCATAAACTGCACTATCTTTCTTTCTTCT

Coding sequence (CDS)

ACACAGAAGATGAACAGACCCGGAGACTGGAACTGCACCTCCTGCCACCACTTGAACTTCCAGAGGAGGGACATCTGCCAGCGCTGCGGCGATCCCAAGACCGGCGGCGGCGGCGGCGCAAGAGCTGGGTCTGGATTCGGGTTCGCCGGGTCGGACGTCAGGCCCGGGGACTGGTACTGCAGCGTAGGCAACTGTGGAGCCCACAATTTCGCAAGCCGGTCAAGCTGCTTCAAATGTGGGGCCTTCAAAGACGACATGTCGACCTTCGACTTCGACCTTCCTCGTCCAACTCCTCGCGGAATATCCCCTTTTCCTTTCGCTACTCCCGCCCGTTCCCCTGCCTCCGCTTGGAAGTCCGGTGACTGGATTTGTGCCAGGGTTTAG

Protein sequence

TQKMNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGGGGARAGSGFGFAGSDVRPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISPFPFATPARSPASAWKSGDWICARV

Homology

[Close]

BLAST of Carg06500 vs. NCBI nr
Match: XP_022955940.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata] >XP_022955941.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata])

HSP 1 Score: 238.0 bits (606), Expect = 1.7e-59
Identity = 118/123 (95.93%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 4   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGXXXXXXXXXXXXAGSDVRPGDWYCSVG 63
           MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGG  XXXXXXXXXX GSDVRPGDWYCSVG
Sbjct: 1   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGG-GXXXXXXXXXXXGSDVRPGDWYCSVG 60

Query: 64  NCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISPFPFATPARSPASAWKSGDWI 123
           NCGAHNFASRSSCFKCGAFKDDMS FDFDLPRPTPRGISPF FATPARSPASAWKSGDWI
Sbjct: 61  NCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFAFATPARSPASAWKSGDWI 120

Query: 124 CAR 127
           CAR
Sbjct: 121 CAR 122

[Close]

BLAST of Carg06500 vs. NCBI nr
Match: XP_022979604.1 (ranBP2-type zinc finger protein At1g67325-like [Cucurbita maxima])

HSP 1 Score: 233.0 bits (593), Expect = 5.5e-58
Identity = 105/123 (85.37%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 4   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGXXXXXXXXXXXXAGSDVRPGDWYCSVG 63
           MNRPGDWNCTSCHHLNFQRRDICQRCGDPK GG             GSDVRPGDWYCS+G
Sbjct: 1   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKAGG--GGRAGSGFGFGGSDVRPGDWYCSLG 60

Query: 64  NCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISPFPFATPARSPASAWKSGDWI 123
           NCGAHNFASRSSCFKCGAFKDDMS FDFDLPRPTPRGISPF F TPARSPASAWKSGDWI
Sbjct: 61  NCGAHNFASRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFGFPTPARSPASAWKSGDWI 120

Query: 124 CAR 127
           CAR
Sbjct: 121 CAR 121

[Close]

BLAST of Carg06500 vs. NCBI nr
Match: XP_023528279.1 (uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo] >XP_023528280.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 232.3 bits (591), Expect = 9.4e-58
Identity = 104/123 (84.55%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 4   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGXXXXXXXXXXXXAGSDVRPGDWYCSVG 63
           MNRPGDWNCTSCHH NFQRRDICQRCGDPKTG              GSDVRPGDWYCSVG
Sbjct: 1   MNRPGDWNCTSCHHFNFQRRDICQRCGDPKTGA--AVRPGSGFGFGGSDVRPGDWYCSVG 60

Query: 64  NCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISPFPFATPARSPASAWKSGDWI 123
           NCGAHNFA+RSSCFKCGAFKDDMS FDFDLPRPTPRGISPF F+TPARSPASAWKSGDWI
Sbjct: 61  NCGAHNFATRSSCFKCGAFKDDMSAFDFDLPRPTPRGISPFAFSTPARSPASAWKSGDWI 120

Query: 124 CAR 127
           CAR
Sbjct: 121 CAR 121

[Close]

BLAST of Carg06500 vs. NCBI nr
Match: XP_008454250.1 (PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 3.5e-52
Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 4   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGXXXXXXXXXXXXAGSDVRPGDWYCSVG 63
           M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GG    XXXXXXXX   DVRPGDWYCSVG
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGG-GVGXXXXXXXXXXXDVRPGDWYCSVG 60

Query: 64  NCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISPFPFATPARSPASAWKSGDWI 123
           NCGAHNFASRSSCFKCGAFKDDMS FDFD+PRP+PRGISPF FA+PAR+ ASAWKSGDWI
Sbjct: 61  NCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFASPARAAASAWKSGDWI 120

Query: 124 CAR 127
           CAR
Sbjct: 121 CAR 122

[Close]

BLAST of Carg06500 vs. NCBI nr
Match: KGN52873.1 (hypothetical protein Csa_4G004840 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50
Identity = 101/123 (82.11%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 4   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGXXXXXXXXXXXXAGSDVRPGDWYCSVG 63
           M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GG    XXXXXXXX   DVRPGDWYCSVG
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGG-GIGXXXXXXXXXXXDVRPGDWYCSVG 60

Query: 64  NCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISPFPFATPARSPASAWKSGDWI 123
           NCGAHNFASRSSCFKCGAFKDDMS FDFD+PR +PRGISPF F +PAR+ ASAWKSGDWI
Sbjct: 61  NCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSGDWI 120

Query: 124 CAR 127
           CAR
Sbjct: 121 CAR 122

[Close]

BLAST of Carg06500 vs. TAIR10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 144.4 bits (363), Expect = 4.7e-35
Identity = 71/146 (48.63%), Postives = 81/146 (55.48%), Query Frame = 0


Query: 4   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKT----------GGXXXXXXXXXXXXAGSDV 63
           M+RPGDWNC SC HLNFQRRD CQRCGD ++          G              GSDV
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDV 60

Query: 64  RPGDWYCSVGNCGAHNFASRSSCFKCGAFKDDM------------STFDFDLPRPTPRGI 123
           RPGDWYC+VGNCG HNFASRS+CFKCG FKD+             + FD D+ R      
Sbjct: 61  RPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAXXXXXXXXGPAMFDADIMRS----- 120

Query: 124 SPFPFATPARSPASAWKSGDWICARV 128
                  P     S+WKSGDWIC R+
Sbjct: 121 -----RVPGNGGRSSWKSGDWICTRI 136

[Close]

BLAST of Carg06500 vs. TAIR10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 134.4 bits (337), Expect = 4.8e-32
Identity = 69/141 (48.94%), Postives = 81/141 (57.45%), Query Frame = 0


Query: 4   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGG---------XXXXXXXXXXXXAGSDVR 63
           MNRPGDWNC  C HLNFQRRD CQRC +P+ GG                      G DVR
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVR 60

Query: 64  PGDWYCSVGNCGAHNFASRSSCFKCGAFKDDMS-------TFDFDLPRPTPRGISPFPFA 123
           PGDWYC++G+CG HNFA+RSSCFKCGA KD+ S       T   D+     RG+  F  +
Sbjct: 61  PGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGS 120

Query: 124 TP--ARSPASAWKSGDWICAR 127
           +     +  S WKSGDWIC R
Sbjct: 121 SSGGGGTGRSPWKSGDWICPR 141

[Close]

BLAST of Carg06500 vs. TAIR10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 5.9e-22
Identity = 45/120 (37.50%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 8   GDWNCTSCHHLNFQRRDICQRCGDPKTGGXXXXXXXXXXXXAGSDVRPGDWYCSVGNCGA 67
           GDW C +C H NF++R+ CQ+CG PK GG              ++V  GDWYC   NCG+
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNR----TEVMAGDWYCGALNCGS 65

Query: 68  HNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISPFPFATPARSPASAWKSGDWICARV 127
           HN+ASR+SC++CG  K + +   +        G     +     +    WK+GDW+C RV
Sbjct: 66  HNYASRTSCYRCGMIKVEYTEQYY--------GAQMVAYGNDGAACPPGWKTGDWVCPRV 113

[Close]

BLAST of Carg06500 vs. Swiss-Prot
Match: sp|O13801|YE04_SCHPO (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.8e-05
Identity = 37/130 (28.46%), Postives = 39/130 (30.00%), Query Frame = 0


Query: 6   RPGDWNCTSCHHLNFQRRDICQRCGDP-------KTG----------------------- 65
           RPGDWNC  C   NFQRR  C RC  P        TG                       
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFPGPTHVSAATGSNTFSPDFPYGNSYGNGSSHFIA 402

Query: 66  ----------------------GXXXXXXXXXXXXAGSDV--RPGDWYCSVGNCGAHNFA 82
                                 G             G +V  R GDW C    CG HNFA
Sbjct: 403 NYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFGGNVPFRAGDWKCGSEGCGYHNFA 462

[Close]

BLAST of Carg06500 vs. Swiss-Prot
Match: sp|P32770|NRP1_YEAST (Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NRP1 PE=1 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 5.3e-04
Identity = 18/27 (66.67%), Postives = 18/27 (66.67%), Query Frame = 0


Query: 6   RPGDWNCTSCHHLNFQRRDICQRCGDP 33
           RPGDWNC SC   NFQRR  C RC  P
Sbjct: 355 RPGDWNCPSCGFSNFQRRTACFRCSFP 381

[Close]

BLAST of Carg06500 vs. TrEMBL
Match: tr|A0A1S3BZE4|A0A1S3BZE4_CUCME (uncharacterized RNA-binding protein C17H9.04c-like OS=Cucumis melo OX=3656 GN=LOC103494712 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.3e-52
Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 4   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGXXXXXXXXXXXXAGSDVRPGDWYCSVG 63
           M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GG    XXXXXXXX   DVRPGDWYCSVG
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGG-GVGXXXXXXXXXXXDVRPGDWYCSVG 60

Query: 64  NCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISPFPFATPARSPASAWKSGDWI 123
           NCGAHNFASRSSCFKCGAFKDDMS FDFD+PRP+PRGISPF FA+PAR+ ASAWKSGDWI
Sbjct: 61  NCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRPSPRGISPFAFASPARAAASAWKSGDWI 120

Query: 124 CAR 127
           CAR
Sbjct: 121 CAR 122

[Close]

BLAST of Carg06500 vs. TrEMBL
Match: tr|A0A0A0KTI0|A0A0A0KTI0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004840 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 9.6e-51
Identity = 101/123 (82.11%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 4   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGXXXXXXXXXXXXAGSDVRPGDWYCSVG 63
           M+RPGDWNC SC HLNFQRRD+CQRCG+PK+GG    XXXXXXXX   DVRPGDWYCSVG
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGEPKSGG-GIGXXXXXXXXXXXDVRPGDWYCSVG 60

Query: 64  NCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISPFPFATPARSPASAWKSGDWI 123
           NCGAHNFASRSSCFKCGAFKDDMS FDFD+PR +PRGISPF F +PAR+ ASAWKSGDWI
Sbjct: 61  NCGAHNFASRSSCFKCGAFKDDMSAFDFDIPRRSPRGISPFAFPSPARTAASAWKSGDWI 120

Query: 124 CAR 127
           CAR
Sbjct: 121 CAR 122

[Close]

BLAST of Carg06500 vs. TrEMBL
Match: tr|V4RZD2|V4RZD2_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026703mg PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-37
Identity = 80/128 (62.50%), Postives = 85/128 (66.41%), Query Frame = 0


Query: 4   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGXXXXXXXXXXXXA-----GSDVRPGDW 63
           MNRPGDWNC SC HLNFQRRD CQRCGDP++ G            +     GSDVRPGDW
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDW 60

Query: 64  YCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISPFPFATPARSPASAWK 123
           YCS GNCGAHNFASRSSCFKCGAFKDD++   FD   P  RG S   F    R   S WK
Sbjct: 61  YCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPRSRGSS---FGGGNR---SGWK 120

Query: 124 SGDWICAR 127
           SGDWIC R
Sbjct: 121 SGDWICTR 122

[Close]

BLAST of Carg06500 vs. TrEMBL
Match: tr|A0A067EPN8|A0A067EPN8_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031858mg PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-37
Identity = 80/128 (62.50%), Postives = 85/128 (66.41%), Query Frame = 0


Query: 4   MNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGGXXXXXXXXXXXXA-----GSDVRPGDW 63
           MNRPGDWNC SC HLNFQRRD CQRCGDP++ G            +     GSDVRPGDW
Sbjct: 1   MNRPGDWNCRSCQHLNFQRRDSCQRCGDPRSSGDFCGFGGRGGGSSFGFGTGSDVRPGDW 60

Query: 64  YCSVGNCGAHNFASRSSCFKCGAFKDDMSTFDFDLPRPTPRGISPFPFATPARSPASAWK 123
           YCS GNCGAHNFASRSSCFKCGAFKDD++   FD   P  RG S   F    R   S WK
Sbjct: 61  YCSAGNCGAHNFASRSSCFKCGAFKDDVAGGGFDCDMPRSRGSS---FGGGNR---SGWK 120

Query: 124 SGDWICAR 127
           SGDWIC R
Sbjct: 121 SGDWICTR 122

[Close]

BLAST of Carg06500 vs. TrEMBL
Match: tr|A0A059BST6|A0A059BST6_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02548 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.1e-36
Identity = 77/128 (60.16%), Postives = 85/128 (66.41%), Query Frame = 0


Query: 3   KMNRPGDWNCTSCHHLNFQRRDICQRCGDPKTGG---XXXXXXXXXXXXAGSDVRPGDWY 62
           KM+RPGDWNC SC HLNFQRRD CQRCGD K  G                GSDVRPGDWY
Sbjct: 13  KMSRPGDWNCKSCQHLNFQRRDSCQRCGDAKCSGDFASFGGRSGSSFGFTGSDVRPGDWY 72

Query: 63  CSVGNCGAHNFASRSSCFKCGAFKDDMS-TFDFDLPRPTPRGISPFPFATPARSPASAWK 122
           C+VGNCG HNFASRS+CFKCGAFK+D++  +DFD PR   RG+        A    S WK
Sbjct: 73  CTVGNCGTHNFASRSTCFKCGAFKEDLAGGYDFDAPR--SRGV-----GNSAGGSRSGWK 132

Query: 123 SGDWICAR 127
           SGDWIC R
Sbjct: 133 SGDWICNR 133

The following BLAST results are available for this feature:

BLAST of Carg06500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955940.1	1.7e-59	95.93	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata] >XP_0229...	[more]
XP_022979604.1	5.5e-58	85.37	ranBP2-type zinc finger protein At1g67325-like [Cucurbita maxima]	[more]
XP_023528279.1	9.4e-58	84.55	uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo] ...	[more]
XP_008454250.1	3.5e-52	83.74	PREDICTED: uncharacterized RNA-binding protein C17H9.04c-like [Cucumis melo]	[more]
KGN52873.1	1.5e-50	82.11	hypothetical protein Csa_4G004840 [Cucumis sativus]	[more]

BLAST of Carg06500 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15680.1	4.7e-35	48.63	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	4.8e-32	48.94	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	5.9e-22	37.50	Ran BP2/NZF zinc finger-like superfamily protein	[more]

BLAST of Carg06500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O13801\|YE04_SCHPO	2.8e-05	28.46	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]
sp\|P32770\|NRP1_YEAST	5.3e-04	66.67	Asparagine-rich protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)...	[more]

BLAST of Carg06500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BZE4\|A0A1S3BZE4_CUCME	2.3e-52	83.74	uncharacterized RNA-binding protein C17H9.04c-like OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A0A0KTI0\|A0A0A0KTI0_CUCSA	9.6e-51	82.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004840 PE=4 SV=1	[more]
tr\|V4RZD2\|V4RZD2_9ROSI	1.2e-37	62.50	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026703mg PE=4 ...	[more]
tr\|A0A067EPN8\|A0A067EPN8_CITSI	1.2e-37	62.50	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g031858mg PE=4 SV=1	[more]
tr\|A0A059BST6\|A0A059BST6_EUCGR	5.1e-36	60.16	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036443	Znf_RanBP2_sf
IPR001876	Znf_RanBP2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06500-RA	Carg06500-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 8..32 e-value: 1.4E-7 score: 41.2 coord: 56..82 e-value: 2.3E-5 score: 33.8
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 6..33 e-value: 2.8E-4 score: 20.0 coord: 54..81 e-value: 8.0E-6 score: 25.0
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 58..79
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 10..29
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 54..85 score: 9.89
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 6..35 score: 9.755
None	No IPR available	GENE3D	G3DSA:4.10.1060.10		coord: 1..37 e-value: 2.4E-11 score: 44.6 coord: 46..86 e-value: 2.6E-14 score: 54.1
None	No IPR available	PANTHER	PTHR23111:SF21	SUBFAMILY NOT NAMED	coord: 4..126
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 4..126
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	coord: 4..36
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	coord: 49..85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06500	Cla015384	Watermelon (97103) v1	carwmB0117
Carg06500	Cla012699	Watermelon (97103) v1	carwmB0120
Carg06500	Csa4G004840	Cucumber (Chinese Long) v2	carcuB0128
Carg06500	Csa7G433230	Cucumber (Chinese Long) v2	carcuB0130
Carg06500	MELO3C017900	Melon (DHL92) v3.5.1	carmeB0127
Carg06500	MELO3C023401	Melon (DHL92) v3.5.1	carmeB0121
Carg06500	ClCG09G002710	Watermelon (Charleston Gray)	carwcgB0117
Carg06500	ClCG07G012800	Watermelon (Charleston Gray)	carwcgB0121
Carg06500	CSPI04G01410	Wild cucumber (PI 183967)	carcpiB0133
Carg06500	CSPI07G20810	Wild cucumber (PI 183967)	carcpiB0135
Carg06500	Cucsa.096580	Cucumber (Gy14) v1	carcgyB0141
Carg06500	CmaCh08G006700	Cucurbita maxima (Rimu)	carcmaB0160
Carg06500	CmaCh01G001330	Cucurbita maxima (Rimu)	carcmaB0157
Carg06500	CmoCh01G001410	Cucurbita moschata (Rifu)	carcmoB0166
Carg06500	CmoCh08G006360	Cucurbita moschata (Rifu)	carcmoB0169
Carg06500	CmoCh14G013670	Cucurbita moschata (Rifu)	carcmoB0163
Carg06500	Lsi02G027290	Bottle gourd (USVL1VR-Ls)	carlsiB106
Carg06500	Lsi07G004780	Bottle gourd (USVL1VR-Ls)	carlsiB109
Carg06500	Cp4.1LG02g14760	Cucurbita pepo (Zucchini)	carcpeB0175
Carg06500	CsGy4G001300	Cucumber (Gy14) v2	carcgybB0127
Carg06500	MELO3C017900.2	Melon (DHL92) v3.6.1	carmedB0131
Carg06500	MELO3C004523.2	Melon (DHL92) v3.6.1	carmedB0130
Carg06500	MELO3C023401.2	Melon (DHL92) v3.6.1	carmedB0124
Carg06500	CsaV3_7G032620	Cucumber (Chinese Long) v3	carcucB0139
Carg06500	CsaV3_4G001400	Cucumber (Chinese Long) v3	carcucB0137
Carg06500	Cla97C07G139600	Watermelon (97103) v2	carwmbB0126
Carg06500	Cla97C09G164850	Watermelon (97103) v2	carwmbB0127
Carg06500	Bhi01G002778	Wax gourd	carwgoB0145
Carg06500	Bhi09G000041	Wax gourd	carwgoB0150

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg06500	Carg04239	Silver-seed gourd	carcarB139
Carg06500	Carg18827	Silver-seed gourd	carcarB143

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06500	Cucurbita maxima (Rimu)	carcmaB0154
Carg06500	Cucurbita pepo (Zucchini)	carcpeB0173
Carg06500	Cucurbita pepo (Zucchini)	carcpeB0176