CmoCh08G005550 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CACAGAAAATGGGCTTTCATTTTGCTTGCAAATGGCTTTTGTTAGCACTCCTGTTAGCCTCACCGGCGGTGAGCTTTATTGCAGGAGATGCAGAGAAAGACAGGGAGGAATGCACGCAGCAATTGGCTGGAATGGCGACGTGTCTAGCGTACGTGAGCGGTGACGCAAAGGCTCCAACGCCGGACTGTTGCAGTGGGCTGAAGGGCGTGCTTAAAAGCAACAAGAAATGCCTGTGCGTTATAGTGAAAGACCGAAATGACCCTGACTTGGGGCTTCAGATTAATGTCACCCTTGCCTTGGGCCTGCCTGATGTCTGCCACGCCCCTGCCAATGTCTCCAATTGTCCTGGTAACTACTCCGCGTTCTTCGTGTTCTTCGTGTTCTTCGTGTTCTTCGTGTTCTTCTTTTAAATGGGGTTGTTGCAGCTCTATTAAACTTGCCGCCCAGTTCACCGGAGGCTCAAGTTTTCTATCAATTTGGCAAGGCGCAAAGCTCCTCTGCTGCTGCAGCTCCCATAAGTCCTTCTCCGGCCATTAGCTCCACTGGTAATTTGATGATCAATTTTCTACAGTTTTTTTTTAGTTTGGAAAGCAAAATTAAGGTGTTGTTCTTTAAAATTGCAGGTGGAGGAGGCAGTAGAAATGGAACAGATAAGGGGGAAGCTTACACCATTGGAAACAAATGGCTGCCATTGAAGAGTTTGGTTGTTGCAGCTCTTTTGGTTTTGTTTTTGTTGGATTCTTAAACTGTTTTGAGTATATTATTCATGATTTTATTGTGTTCTGTTCCAATATTAGTATTGTAATTCGTGTTTTTAAACGGTTGTTTGGAGTTGGAGATGGAATATATGTCCAGAGCGTCAAATTTGGGACCAATAAAGTAACATAGCGTTTACGTGATAACAACAATAAAATTTGTTTGAGGAGACGAGGACTCGTGATGCTTGACCACCCACAAAGCTCAAATACTTATGTTAGTTAGAGGGTTAGGAAAAGGTATTGAAATTGGATGAAAATATATCTATGTGTAAATTAGGGTTGACTAGGATCATACGAACAGAGAGAATGTTGGGTTCGGGTCTCTTGTGAGGTAGACCCTAGGGTTGGCCTCTGCCTCAAGGAACTTGGGCTTTGACCCAGTTTCGTTTTTACTTTCGTGTTTGGTGGTTCGGTTTCTTTTATATCACGATTTAGTTTAATTTGTATATCACTTTTTTTATTTTTTTTTATTTAGTTTTTTAATTTTTCG CACAGAAAATGGGCTTTCATTTTGCTTGCAAATGGCTTTTGTTAGCACTCCTGTTAGCCTCACCGGCGGTGAGCTTTATTGCAGGAGATGCAGAGAAAGACAGGGAGGAATGCACGCAGCAATTGGCTGGAATGGCGACGTGTCTAGCGTACGTGAGCGGTGACGCAAAGGCTCCAACGCCGGACTGTTGCAGTGGGCTGAAGGGCGTGCTTAAAAGCAACAAGAAATGCCTGTGCGTTATAGTGAAAGACCGAAATGACCCTGACTTGGGGCTTCAGATTAATGTCACCCTTGCCTTGGGCCTGCCTGATGTCTGCCACGCCCCTGCCAATGTCTCCAATTGTCCTGCTCTATTAAACTTGCCGCCCAGTTCACCGGAGGCTCAAGTTTTCTATCAATTTGGCAAGGCGCAAAGCTCCTCTGCTGCTGCAGCTCCCATAAGTCCTTCTCCGGCCATTAGCTCCACTGGTGGAGGAGGCAGTAGAAATGGAACAGATAAGGGGGAAGCTTACACCATTGGAAACAAATGGCTGCCATTGAAGAGTTTGGTTGTTGCAGCTCTTTTGGTTTTGTTTTTGTTGGATTCTTAAACTGTTTTGAGTATATTATTCATGATTTTATTGTGTTCTGTTCCAATATTAGTATTGTAATTCGTGTTTTTAAACGGTTGTTTGGAGTTGGAGATGGAATATATGTCCAGAGCGTCAAATTTGGGACCAATAAAGTAACATAGCGTTTACGTGATAACAACAATAAAATTTGTTTGAGGAGACGAGGACTCGTGATGCTTGACCACCCACAAAGCTCAAATACTTATGTTAGTTAGAGGGTTAGGAAAAGGTATTGAAATTGGATGAAAATATATCTATGTGTAAATTAGGGTTGACTAGGATCATACGAACAGAGAGAATGTTGGGTTCGGGTCTCTTGTGAGGTAGACCCTAGGGTTGGCCTCTGCCTCAAGGAACTTGGGCTTTGACCCAGTTTCGTTTTTACTTTCGTGTTTGGTGGTTCGGTTTCTTTTATATCACGATTTAGTTTAATTTGTATATCACTTTTTTTATTTTTTTTTATTTAGTTTTTTAATTTTTCG ATGGGCTTTCATTTTGCTTGCAAATGGCTTTTGTTAGCACTCCTGTTAGCCTCACCGGCGGTGAGCTTTATTGCAGGAGATGCAGAGAAAGACAGGGAGGAATGCACGCAGCAATTGGCTGGAATGGCGACGTGTCTAGCGTACGTGAGCGGTGACGCAAAGGCTCCAACGCCGGACTGTTGCAGTGGGCTGAAGGGCGTGCTTAAAAGCAACAAGAAATGCCTGTGCGTTATAGTGAAAGACCGAAATGACCCTGACTTGGGGCTTCAGATTAATGTCACCCTTGCCTTGGGCCTGCCTGATGTCTGCCACGCCCCTGCCAATGTCTCCAATTGTCCTGCTCTATTAAACTTGCCGCCCAGTTCACCGGAGGCTCAAGTTTTCTATCAATTTGGCAAGGCGCAAAGCTCCTCTGCTGCTGCAGCTCCCATAAGTCCTTCTCCGGCCATTAGCTCCACTGGTGGAGGAGGCAGTAGAAATGGAACAGATAAGGGGGAAGCTTACACCATTGGAAACAAATGGCTGCCATTGAAGAGTTTGGTTGTTGCAGCTCTTTTGGTTTTGTTTTTGTTGGATTCTTAA
BLAST of CmoCh08G005550 vs. Swiss-Prot
Match: YLS3_ARATH (Protein YLS3 OS=Arabidopsis thaliana GN=YLS3 PE=2 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 1.8e-43 Identity = 95/191 (49.74%), Postives = 126/191 (65.97%), Query Frame = 1
BLAST of CmoCh08G005550 vs. Swiss-Prot
Match: LTPG1_ARATH (Non-specific lipid transfer protein GPI-anchored 1 OS=Arabidopsis thaliana GN=LTPG1 PE=1 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 1.8e-11 Identity = 58/188 (30.85%), Postives = 92/188 (48.94%), Query Frame = 1
BLAST of CmoCh08G005550 vs. Swiss-Prot
Match: NLTL5_ARATH (Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.8e-08 Identity = 53/158 (33.54%), Postives = 80/158 (50.63%), Query Frame = 1
BLAST of CmoCh08G005550 vs. Swiss-Prot
Match: NLTL2_ARATH (Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 2.6e-07 Identity = 41/147 (27.89%), Postives = 69/147 (46.94%), Query Frame = 1
BLAST of CmoCh08G005550 vs. Swiss-Prot
Match: LTPG2_ARATH (Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana GN=LTPG2 PE=2 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.2e-06 Identity = 47/162 (29.01%), Postives = 72/162 (44.44%), Query Frame = 1
BLAST of CmoCh08G005550 vs. TrEMBL
Match: A0A0A0K6P6_CUCSA (Non-specific lipid-transfer protein OS=Cucumis sativus GN=Csa_7G430130 PE=4 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 1.9e-60 Identity = 133/192 (69.27%), Postives = 155/192 (80.73%), Query Frame = 1
BLAST of CmoCh08G005550 vs. TrEMBL
Match: D7TNT3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0156g00090 PE=3 SV=1) HSP 1 Score: 201.8 bits (512), Expect = 7.4e-49 Identity = 104/188 (55.32%), Postives = 132/188 (70.21%), Query Frame = 1
BLAST of CmoCh08G005550 vs. TrEMBL
Match: A0A067DWS7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029183mg PE=4 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 2.2e-48 Identity = 105/193 (54.40%), Postives = 133/193 (68.91%), Query Frame = 1
BLAST of CmoCh08G005550 vs. TrEMBL
Match: A5B703_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_016657 PE=4 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 1.4e-47 Identity = 92/143 (64.34%), Postives = 115/143 (80.42%), Query Frame = 1
BLAST of CmoCh08G005550 vs. TrEMBL
Match: V4TQU7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033694mg PE=4 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 4.1e-47 Identity = 103/192 (53.65%), Postives = 130/192 (67.71%), Query Frame = 1
BLAST of CmoCh08G005550 vs. TAIR10
Match: AT2G44300.1 (AT2G44300.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 183.3 bits (464), Expect = 1.4e-46 Identity = 103/191 (53.93%), Postives = 128/191 (67.02%), Query Frame = 1
BLAST of CmoCh08G005550 vs. TAIR10
Match: AT2G44290.1 (AT2G44290.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 177.2 bits (448), Expect = 9.9e-45 Identity = 95/191 (49.74%), Postives = 126/191 (65.97%), Query Frame = 1
BLAST of CmoCh08G005550 vs. TAIR10
Match: AT1G55260.1 (AT1G55260.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 127.5 bits (319), Expect = 9.0e-30 Identity = 66/181 (36.46%), Postives = 109/181 (60.22%), Query Frame = 1
BLAST of CmoCh08G005550 vs. TAIR10
Match: AT3G58550.1 (AT3G58550.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 109.8 bits (273), Expect = 1.9e-24 Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = 1
BLAST of CmoCh08G005550 vs. TAIR10
Match: AT1G27950.1 (AT1G27950.1 glycosylphosphatidylinositol-anchored lipid protein transfer 1) HSP 1 Score: 70.9 bits (172), Expect = 1.0e-12 Identity = 58/188 (30.85%), Postives = 92/188 (48.94%), Query Frame = 1
BLAST of CmoCh08G005550 vs. NCBI nr
Match: gi|659122601|ref|XP_008461230.1| (PREDICTED: protein YLS3-like [Cucumis melo]) HSP 1 Score: 250.8 bits (639), Expect = 2.0e-63 Identity = 141/194 (72.68%), Postives = 152/194 (78.35%), Query Frame = 1
BLAST of CmoCh08G005550 vs. NCBI nr
Match: gi|449436236|ref|XP_004135899.1| (PREDICTED: protein YLS3 [Cucumis sativus]) HSP 1 Score: 240.4 bits (612), Expect = 2.7e-60 Identity = 133/192 (69.27%), Postives = 155/192 (80.73%), Query Frame = 1
BLAST of CmoCh08G005550 vs. NCBI nr
Match: gi|225450281|ref|XP_002270671.1| (PREDICTED: protein YLS3 [Vitis vinifera]) HSP 1 Score: 201.8 bits (512), Expect = 1.1e-48 Identity = 104/188 (55.32%), Postives = 132/188 (70.21%), Query Frame = 1
BLAST of CmoCh08G005550 vs. NCBI nr
Match: gi|641826827|gb|KDO46035.1| (hypothetical protein CISIN_1g029183mg [Citrus sinensis]) HSP 1 Score: 200.3 bits (508), Expect = 3.1e-48 Identity = 105/193 (54.40%), Postives = 133/193 (68.91%), Query Frame = 1
BLAST of CmoCh08G005550 vs. NCBI nr
Match: gi|1000981328|ref|XP_002512201.2| (PREDICTED: protein YLS3 [Ricinus communis]) HSP 1 Score: 199.9 bits (507), Expect = 4.0e-48 Identity = 96/149 (64.43%), Postives = 119/149 (79.87%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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