CmoCh07G011150 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G011150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	JOSEPHIN-like protein, putative
Location	Cmo_Chr07 : 5886592 .. 5886948 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAAAATAAGGTCAAGCAGAGGAGTGAGTTTGAGGTCAGATGAAGGCACCGCCAAGCCAACAGCTCTCCAAAGAAACAGGAAAAGGGTGATCACAGTGTTATGGGTTTTCCGGCTGCCAAAATCCGGCAGATTCTCGCCGGAAAGTTTCCTCCGCCGCGTAGGCGCCAAAGTGGCCAAAGTTCTCCGCGCCGTGTCATTGAAAAAGAGGTCAGAGTGTTCAAAAAAGGCCTCCGCCGCTACTAACTTCAACAGATCCCATTCGGTGTCGGATTCCATGGAAGAATCTCACAGAGCTGAAGCTGTCAGAGATTGCATCCACTTCTTCAATTCCTCTTCTTCTTCAGCTCTTTGA

mRNA sequence

ATGTCAAAAATAAGGTCAAGCAGAGGAGTGAGTTTGAGGTCAGATGAAGGCACCGCCAAGCCAACAGCTCTCCAAAGAAACAGGAAAAGGGTGATCACAGTGTTATGGGTTTTCCGGCTGCCAAAATCCGGCAGATTCTCGCCGGAAAGTTTCCTCCGCCGCGTAGGCGCCAAAGTGGCCAAAGTTCTCCGCGCCGTGTCATTGAAAAAGAGGTCAGAGTGTTCAAAAAAGGCCTCCGCCGCTACTAACTTCAACAGATCCCATTCGGTGTCGGATTCCATGGAAGAATCTCACAGAGCTGAAGCTGTCAGAGATTGCATCCACTTCTTCAATTCCTCTTCTTCTTCAGCTCTTTGA

Coding sequence (CDS)

ATGTCAAAAATAAGGTCAAGCAGAGGAGTGAGTTTGAGGTCAGATGAAGGCACCGCCAAGCCAACAGCTCTCCAAAGAAACAGGAAAAGGGTGATCACAGTGTTATGGGTTTTCCGGCTGCCAAAATCCGGCAGATTCTCGCCGGAAAGTTTCCTCCGCCGCGTAGGCGCCAAAGTGGCCAAAGTTCTCCGCGCCGTGTCATTGAAAAAGAGGTCAGAGTGTTCAAAAAAGGCCTCCGCCGCTACTAACTTCAACAGATCCCATTCGGTGTCGGATTCCATGGAAGAATCTCACAGAGCTGAAGCTGTCAGAGATTGCATCCACTTCTTCAATTCCTCTTCTTCTTCAGCTCTTTGA

Homology

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BLAST of CmoCh07G011150 vs. TrEMBL
Match: A0A0A0L2K7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G308510 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-28
Identity = 79/122 (64.75%), Postives = 90/122 (73.77%), Query Frame = 1


Query: 2   SKIRSSRGVSLRSDEGTAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVAK 61
           +K+ S R VS  SD+  A   A  R RKR I V WVFRLPKS RFSPE FLRR+GAK+AK
Sbjct: 3   TKLSSGRRVSFSSDQAAA---AKSRIRKRPIIVFWVFRLPKSARFSPEKFLRRLGAKMAK 62

Query: 62  VLRAVSLKKRSECSKKASAATN------FNRSHSVSDSMEESHRAEAVRDCIHFFNSSSS 118
           VLR VSL+KRS  S  +S+  N      FNRSHSVSDSMEESHRAEAV+DCI FFNSS+S
Sbjct: 63  VLRYVSLRKRSTSSTNSSSLKNNNGSSKFNRSHSVSDSMEESHRAEAVKDCIQFFNSSNS 121

[Close]

BLAST of CmoCh07G011150 vs. TrEMBL
Match: A0A061EQH2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021741 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.3e-15
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 1


Query: 5   RSSRGVSLRSDEGTAKPTALQR----------NRKRVITVLWVFRLPKSGRFSPESFLRR 64
           R+S+ VS   D    +PT L +          NR+RV+  ++ FRL +S RFSP   LRR
Sbjct: 4   RTSKRVSFSPDVNE-RPTILLKHGGSTGRTRGNRRRVVAGIFTFRLVRSSRFSPARLLRR 63

Query: 65  VGAKVAKVLRAVSLKKRSECSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSS 116
           +GAKVA+ LR VS+++ S   K +S+++N  RS S+++S+ +SHRAEA+ DCI F NSSS
Sbjct: 64  LGAKVARALRFVSMRRNSNSHKVSSSSSNLARSRSLAESI-DSHRAEAIEDCIEFLNSSS 122

[Close]

BLAST of CmoCh07G011150 vs. TrEMBL
Match: G7IPS2_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_2g013470 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.2e-13
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 1


Query: 4   IRSSRGVSLRSDEGTAKPTA--------LQRNRKRVITVLWVFRLPKSGRFSPESFLRRV 63
           +R S+ +    D+   KP          + RNRKR+I   W FRL +    SP  FL R+
Sbjct: 2   LRKSKRLCFSPDDVDEKPAIFLKHGCIKVLRNRKRLIGT-WSFRLHRDPIMSPVRFLIRL 61

Query: 64  GAKVAKVLRAVSLKKRSECSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSSS 116
           GAKVA  +RAVSL++RS  S+K S++T+  RSHS+SD + +SHRA+AV DCI F +SSSS
Sbjct: 62  GAKVASSIRAVSLRRRS--SRKVSSSTSV-RSHSLSDHLTDSHRAKAVEDCIEFLHSSSS 117

[Close]

BLAST of CmoCh07G011150 vs. TrEMBL
Match: A0A067EQR7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033106mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-12
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 27  NRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVAKVLRAVSLKKRSECSKKASAATNFNR 86
           NRKRV+  ++ FR+P+   FSP   LR +GAKV + LR VS KKRS  S+K +++T   R
Sbjct: 31  NRKRVVVGIFSFRIPRDSGFSPARLLRHLGAKVTRALRFVSTKKRS--SRKVTSST-LAR 90

Query: 87  SHSVSDSMEESHRAEAVRDCIHFFNSSSS 116
           S S+++S+ ESHRAEA+ DCI F NSSSS
Sbjct: 91  SRSLAESI-ESHRAEAIEDCIEFLNSSSS 115

[Close]

BLAST of CmoCh07G011150 vs. TrEMBL
Match: V4S561_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013109mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-12
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 27  NRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVAKVLRAVSLKKRSECSKKASAATNFNR 86
           NRKRV+  ++ FR+P+   FSP   LR +GAKV + LR VS KKRS  S+K +++T   R
Sbjct: 31  NRKRVVVGIFSFRIPRDSGFSPARLLRHLGAKVTRALRFVSTKKRS--SRKVTSST-LAR 90

Query: 87  SHSVSDSMEESHRAEAVRDCIHFFNSSSS 116
           S S+++S+ ESHRAEA+ DCI F NSSSS
Sbjct: 91  SRSLAESI-ESHRAEAIEDCIEFLNSSSS 115

[Close]

BLAST of CmoCh07G011150 vs. TAIR10
Match: AT3G09032.1 (AT3G09032.1 unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 5.5e-06
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 1


Query: 27  NRKRVITV-LWVFRLPKSGRFSPESFLRRVGAKVAKVLRAVSLKKR-------------S 86
           +R+RV+ V +  F L  S   +    ++R+GA+ AK LR +S ++              S
Sbjct: 35  SRRRVVLVGILSFGLRSSP--AARKLIQRIGARFAKTLRFISFRRNTTDRRKTSSFLLPS 94

Query: 87  ECSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSS 114
             S  +S+A    RS SV+++  ESHRAEA+ DCI F NSS
Sbjct: 95  SSSSSSSSAIYMKRSKSVNET--ESHRAEAIEDCIEFLNSS 131

[Close]

BLAST of CmoCh07G011150 vs. NCBI nr
Match: gi|659069318|ref|XP_008449204.1| (PREDICTED: josephin-like protein [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29
Identity = 80/121 (66.12%), Postives = 92/121 (76.03%), Query Frame = 1


Query: 2   SKIRSSRGVSLRSDEGTAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVAK 61
           +K+ S R VS  SD+  A  +   RNRKR I V WVFRLPKSGRFSPE FLRR+GAK+AK
Sbjct: 3   TKLSSGRRVSFSSDQSAAGKS---RNRKRPIIVFWVFRLPKSGRFSPEKFLRRLGAKMAK 62

Query: 62  VLRAVSLKKRSECSKKASAATN-----FNRSHSVSDSMEESHRAEAVRDCIHFFNSSSSS 118
           VLR VSL+KRS  S  +S+  N     FNRSHSVSDSMEESHRAEAV+DCI FFNSS+SS
Sbjct: 63  VLRYVSLRKRSTSSNNSSSLKNNGSSKFNRSHSVSDSMEESHRAEAVKDCIKFFNSSNSS 120

[Close]

BLAST of CmoCh07G011150 vs. NCBI nr
Match: gi|778693732|ref|XP_011653683.1| (PREDICTED: josephin-like protein [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 2.2e-28
Identity = 79/122 (64.75%), Postives = 90/122 (73.77%), Query Frame = 1


Query: 2   SKIRSSRGVSLRSDEGTAKPTALQRNRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVAK 61
           +K+ S R VS  SD+  A   A  R RKR I V WVFRLPKS RFSPE FLRR+GAK+AK
Sbjct: 3   TKLSSGRRVSFSSDQAAA---AKSRIRKRPIIVFWVFRLPKSARFSPEKFLRRLGAKMAK 62

Query: 62  VLRAVSLKKRSECSKKASAATN------FNRSHSVSDSMEESHRAEAVRDCIHFFNSSSS 118
           VLR VSL+KRS  S  +S+  N      FNRSHSVSDSMEESHRAEAV+DCI FFNSS+S
Sbjct: 63  VLRYVSLRKRSTSSTNSSSLKNNNGSSKFNRSHSVSDSMEESHRAEAVKDCIQFFNSSNS 121

[Close]

BLAST of CmoCh07G011150 vs. NCBI nr
Match: gi|590628639|ref|XP_007026773.1| (Uncharacterized protein TCM_021741 [Theobroma cacao])

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-14
Identity = 55/121 (45.45%), Postives = 79/121 (65.29%), Query Frame = 1


Query: 5   RSSRGVSLRSDEGTAKPTALQR----------NRKRVITVLWVFRLPKSGRFSPESFLRR 64
           R+S+ VS   D    +PT L +          NR+RV+  ++ FRL +S RFSP   LRR
Sbjct: 4   RTSKRVSFSPDVNE-RPTILLKHGGSTGRTRGNRRRVVAGIFTFRLVRSSRFSPARLLRR 63

Query: 65  VGAKVAKVLRAVSLKKRSECSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSS 116
           +GAKVA+ LR VS+++ S   K +S+++N  RS S+++S+ +SHRAEA+ DCI F NSSS
Sbjct: 64  LGAKVARALRFVSMRRNSNSHKVSSSSSNLARSRSLAESI-DSHRAEAIEDCIEFLNSSS 122

[Close]

BLAST of CmoCh07G011150 vs. NCBI nr
Match: gi|357446581|ref|XP_003593566.1| (hypothetical protein MTR_2g013470 [Medicago truncatula])

HSP 1 Score: 82.0 bits (201), Expect = 7.5e-13
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 1


Query: 4   IRSSRGVSLRSDEGTAKPTA--------LQRNRKRVITVLWVFRLPKSGRFSPESFLRRV 63
           +R S+ +    D+   KP          + RNRKR+I   W FRL +    SP  FL R+
Sbjct: 2   LRKSKRLCFSPDDVDEKPAIFLKHGCIKVLRNRKRLIGT-WSFRLHRDPIMSPVRFLIRL 61

Query: 64  GAKVAKVLRAVSLKKRSECSKKASAATNFNRSHSVSDSMEESHRAEAVRDCIHFFNSSSS 116
           GAKVA  +RAVSL++RS  S+K S++T+  RSHS+SD + +SHRA+AV DCI F +SSSS
Sbjct: 62  GAKVASSIRAVSLRRRS--SRKVSSSTSV-RSHSLSDHLTDSHRAKAVEDCIEFLHSSSS 117

[Close]

BLAST of CmoCh07G011150 vs. NCBI nr
Match: gi|567873447|ref|XP_006429313.1| (hypothetical protein CICLE_v10013109mg [Citrus clementina])

HSP 1 Score: 80.1 bits (196), Expect = 2.9e-12
Identity = 48/89 (53.93%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 27  NRKRVITVLWVFRLPKSGRFSPESFLRRVGAKVAKVLRAVSLKKRSECSKKASAATNFNR 86
           NRKRV+  ++ FR+P+   FSP   LR +GAKV + LR VS KKRS  S+K +++T   R
Sbjct: 31  NRKRVVVGIFSFRIPRDSGFSPARLLRHLGAKVTRALRFVSTKKRS--SRKVTSST-LAR 90

Query: 87  SHSVSDSMEESHRAEAVRDCIHFFNSSSS 116
           S S+++S+ ESHRAEA+ DCI F NSSSS
Sbjct: 91  SRSLAESI-ESHRAEAIEDCIEFLNSSSS 115

The following BLAST results are available for this feature:

BLAST of CmoCh07G011150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh07G011150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2K7_CUCSA	1.5e-28	64.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G308510 PE=4 SV=1	[more]
A0A061EQH2_THECC	7.3e-15	45.45	Uncharacterized protein OS=Theobroma cacao GN=TCM_021741 PE=4 SV=1	[more]
G7IPS2_MEDTR	5.2e-13	46.67	Uncharacterized protein OS=Medicago truncatula GN=MTR_2g013470 PE=4 SV=1	[more]
A0A067EQR7_CITSI	2.0e-12	53.93	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033106mg PE=4 SV=1	[more]
V4S561_9ROSI	2.0e-12	53.93	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013109mg PE=4 SV=1	[more]

BLAST of CmoCh07G011150 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09032.1	5.5e-06	36.63	unknown protein	[more]

BLAST of CmoCh07G011150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069318\|ref\|XP_008449204.1\|	1.2e-29	66.12	PREDICTED: josephin-like protein [Cucumis melo]	[more]
gi\|778693732\|ref\|XP_011653683.1\|	2.2e-28	64.75	PREDICTED: josephin-like protein [Cucumis sativus]	[more]
gi\|590628639\|ref\|XP_007026773.1\|	1.0e-14	45.45	Uncharacterized protein TCM_021741 [Theobroma cacao]	[more]
gi\|357446581\|ref\|XP_003593566.1\|	7.5e-13	46.67	hypothetical protein MTR_2g013470 [Medicago truncatula]	[more]
gi\|567873447\|ref\|XP_006429313.1\|	2.9e-12	53.93	hypothetical protein CICLE_v10013109mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G011150.1	CmoCh07G011150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34355	FAMILY NOT NAMED	coord: 6..115 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G011150	CmaCh03G003640	Cucurbita maxima (Rimu)	cmacmoB669
CmoCh07G011150	CmaCh07G010630	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G011150	Cla018119	Watermelon (97103) v1	cmowmB823
CmoCh07G011150	ClCG04G007170	Watermelon (Charleston Gray)	cmowcgB768
CmoCh07G011150	Cp4.1LG19g02710	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G011150	CsaV3_4G026060	Cucumber (Chinese Long) v3	cmocucB1010
CmoCh07G011150	Cla97C04G073780	Watermelon (97103) v2	cmowmbB866
CmoCh07G011150	Bhi03G001670	Wax gourd	cmowgoB1072
CmoCh07G011150	Bhi11G001575	Wax gourd	cmowgoB1039
CmoCh07G011150	Carg13290	Silver-seed gourd	carcmoB0795

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G011150	Cucurbita pepo (Zucchini)	cmocpeB821
CmoCh07G011150	Cucurbita pepo (Zucchini)	cmocpeB802
CmoCh07G011150	Cucurbita pepo (Zucchini)	cmocpeB832
CmoCh07G011150	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G011150	Bottle gourd (USVL1VR-Ls)	cmolsiB787
CmoCh07G011150	Bottle gourd (USVL1VR-Ls)	cmolsiB788
CmoCh07G011150	Cucumber (Gy14) v2	cgybcmoB418
CmoCh07G011150	Cucumber (Gy14) v2	cgybcmoB537
CmoCh07G011150	Cucumber (Gy14) v2	cgybcmoB842
CmoCh07G011150	Melon (DHL92) v3.6.1	cmomedB881
CmoCh07G011150	Silver-seed gourd	carcmoB0228
CmoCh07G011150	Silver-seed gourd	carcmoB0757
CmoCh07G011150	Silver-seed gourd	carcmoB1344
CmoCh07G011150	Cucumber (Chinese Long) v3	cmocucB0997
CmoCh07G011150	Cucumber (Chinese Long) v3	cmocucB0999
CmoCh07G011150	Cucumber (Chinese Long) v3	cmocucB1017
CmoCh07G011150	Watermelon (97103) v2	cmowmbB850
CmoCh07G011150	Watermelon (97103) v2	cmowmbB853
CmoCh07G011150	Wax gourd	cmowgoB1052
CmoCh07G011150	Cucurbita moschata (Rifu)	cmocmoB228
CmoCh07G011150	Cucurbita moschata (Rifu)	cmocmoB458
CmoCh07G011150	Cucurbita moschata (Rifu)	cmocmoB460
CmoCh07G011150	Cucurbita moschata (Rifu)	cmocmoB479
CmoCh07G011150	Cucurbita moschata (Rifu)	cmocmoB483
CmoCh07G011150	Cucumber (Gy14) v1	cgycmoB0508
CmoCh07G011150	Cucurbita maxima (Rimu)	cmacmoB275
CmoCh07G011150	Cucurbita maxima (Rimu)	cmacmoB673
CmoCh07G011150	Cucurbita maxima (Rimu)	cmacmoB836
CmoCh07G011150	Wild cucumber (PI 183967)	cmocpiB856
CmoCh07G011150	Cucumber (Chinese Long) v2	cmocuB843
CmoCh07G011150	Cucumber (Chinese Long) v2	cmocuB847
CmoCh07G011150	Melon (DHL92) v3.5.1	cmomeB776
CmoCh07G011150	Watermelon (Charleston Gray)	cmowcgB752
CmoCh07G011150	Watermelon (97103) v1	cmowmB804