CmoCh07G010980 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G010980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	30S ribosomal protein S31
Location	Cmo_Chr07 : 5746107 .. 5747765 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCCGTCACGGTCTCCACTCGAAACTTATCTTCGTGATTCTCTCACAGACGCTCTCGTTCACTCTGCTTCATCTTCATCCGTCCATGGCTTCACTTCCTTTCGGACTTCTTCAGGCAACATTTCAATCTCCTACTCTTTCTCCTCGTTGTTTCTCCTTCTCCAAATCCGAAACCCTAGGAACCTCTCTGCGTACTTCTACTGGAACCTCTGCAACTTCCTCGCCTTCTTCAATTCCCGCCGGTATGCATTTGTTACCTTCTTTTGTACTGTTCACCTTCAATCGATTGATTTTTGTTCTATTTTTGCTTTTTTAGTGTATTGTGGCAGAGGCGATAAGAAGACGGAGAAAGGAAAGCGGTTCAAACACTCATTCGGAAATGTATTTGTCTTTACTCCCTCTTTTCTTTGTTCGTTCGACTTTCCTTTGTTCTCATTTGATTTTTTTGGGGAAAAACGTTCAGGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACACCAAGAGTACCAACTCCACCTTCTCCGCCTAGAAAGGATAAGTTTGACGACGATGAGAAAATCAAGATCGAAATCGACGAGTCTCTTTTCTCTCGCTAGTCAAGGAGCAGCCTAGTTCTGTTTGTTTGTTTGAAATTTGTTTTCTAAATCCAGAAGGTACCTCCGCTTCTTATATTCGCAATATTTTTGTATGAATTCTTCAGTTGTTTGCTTTCTCAGTCTACTCGAAGTATGTACTCTCTCCCTTTCTCTTGCTTTTGACCTTTTCGGAGCTAAACTCCGACTATTGATGCTTCATAGGTGATCTTTGCGTCATTAGCAGGCAATTGTTGAAATATATGTTTGCTTCCTCCTCCATGTTATCGAAGGCACTAGAGTTGAGCTATTCTAGACCAACGTTAGATACAAAAAGAATCTACTAGCTCCTTTCTGGTTTTACGAATTTCTTTCCGATTGTTGCCGTTGTATGGAAGCGTCAATTGCTTGTTTATCTACAAAGTTTTAAGCGGACTTTGGGAAGATTTATCCAAAATTTTCTCTGTAATAGGCTAATACGGATCACTTACTTTAATGACTACATAACCGTAAAAATATAAGCTCCAATTGGAGCATTGTTCATCCGATGGTTGATCACTTCACTTCGCAATCATTGAACTAAAAACAAAAAAAAGTTACAGAAATATAGACAAAAAGTAGTTGCGTAGCGTCCTTGGATAGGCTGTTTTCTACTACAAAATAAACTATTTTTCTTAACTCAATTTCAGCCACCTATGTTGCCTTTTATTCTGAATGTTTTGGAGGTTCTACCGTCTCTCTACAAAGAGAGTTTCTCCTGATGTCAACCAAAGCCTTTTATTGTCAATGCCAAGGGTAACTGAAGAGGAGGAGGAAGAAGAAGAGGTACCTAGGTTTATTGGCCCAGAAGACCAAAAAGGAAGGAATCCGACAAATGCTTGAGTCCCAGTTAGTTACTCTTCTTCTGCATCTTCATGTTCTTCCTCCTCCTCCTCTGTATCATCTTCATGTTCCTCCTCCTCTGCATCATCTTTAAGAAGCAGTAGTTTAGTTTACTAGACTTGATGAAAGAAGGAAACACCTCTCTCAGTAGATTTATATGACATGAGTAGCTCAATAAGGGTTGGCAAAAGTCGATGACTGGG

mRNA sequence

AATCCGTCACGGTCTCCACTCGAAACTTATCTTCGTGATTCTCTCACAGACGCTCTCGTTCACTCTGCTTCATCTTCATCCGTCCATGGCTTCACTTCCTTTCGGACTTCTTCAGGCAACATTTCAATCTCCTACTCTTTCTCCTCGTTGTTTCTCCTTCTCCAAATCCGAAACCCTAGGAACCTCTCTGCGTACTTCTACTGGAACCTCTGCAACTTCCTCGCCTTCTTCAATTCCCGCCGTGTATTGTGGCAGAGGCGATAAGAAGACGGAGAAAGGAAAGCGGTTCAAACACTCATTCGGAAATGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACACCAAGAGTACCAACTCCACCTTCTCCGCCTAGAAAGGATAAGTTTGACGACGATGAGAAAATCAAGATCGAAATCGACGAGTCTCTTTTCTCTCGCTAGTCAAGGAGCAGCCTAGTTCTGTTTGTTTGTTTGAAATTTGTTTTCTAAATCCAGAAGGTACCTCCGCTTCTTATATTCGCAATATTTTTGTATGAATTCTTCAGTTGTTTGCTTTCTCAGTCTACTCGAAGTATGTACTCTCTCCCTTTCTCTTGCTTTTGACCTTTTCGGAGCTAAACTCCGACTATTGATGCTTCATAGGTGATCTTTGCGTCATTAGCAGGCAATTGTTGAAATATATGTTTGCTTCCTCCTCCATGTTATCGAAGGCACTAGAGTTGAGCTATTCTAGACCAACGTTAGATACAAAAAGAATCTACTAGCTCCTTTCTGGTTTTACGAATTTCTTTCCGATTGTTGCCGTTGTATGGAAGCGTCAATTGCTTGTTTATCTACAAAGTTTTAAGCGGACTTTGGGAAGATTTATCCAAAATTTTCTCTGTAATAGGCTAATACGGATCACTTACTTTAATGACTACATAACCGTAAAAATATAAGCTCCAATTGGAGCATTGTTCATCCGATGGTTGATCACTTCACTTCGCAATCATTGAACTAAAAACAAAAAAAAGTTACAGAAATATAGACAAAAAGTAGTTGCGTAGCGTCCTTGGATAGGCTGTTTTCTACTACAAAATAAACTATTTTTCTTAACTCAATTTCAGCCACCTATGTTGCCTTTTATTCTGAATGTTTTGGAGGTTCTACCGTCTCTCTACAAAGAGAGTTTCTCCTGATGTCAACCAAAGCCTTTTATTGTCAATGCCAAGGGTAACTGAAGAGGAGGAGGAAGAAGAAGAGGTACCTAGGTTTATTGGCCCAGAAGACCAAAAAGGAAGGAATCCGACAAATGCTTGAGTCCCAGTTAGTTACTCTTCTTCTGCATCTTCATGTTCTTCCTCCTCCTCCTCTGTATCATCTTCATGTTCCTCCTCCTCTGCATCATCTTTAAGAAGCAGTAGTTTAGTTTACTAGACTTGATGAAAGAAGGAAACACCTCTCTCAGTAGATTTATATGACATGAGTAGCTCAATAAGGGTTGGCAAAAGTCGATGACTGGG

Coding sequence (CDS)

ATGGCTTCACTTCCTTTCGGACTTCTTCAGGCAACATTTCAATCTCCTACTCTTTCTCCTCGTTGTTTCTCCTTCTCCAAATCCGAAACCCTAGGAACCTCTCTGCGTACTTCTACTGGAACCTCTGCAACTTCCTCGCCTTCTTCAATTCCCGCCGTGTATTGTGGCAGAGGCGATAAGAAGACGGAGAAAGGAAAGCGGTTCAAACACTCATTCGGAAATGCAAGGCCTCGGGACAAGACGAAAGGGAGAGGGACACCAAGAGTACCAACTCCACCTTCTCCGCCTAGAAAGGATAAGTTTGACGACGATGAGAAAATCAAGATCGAAATCGACGAGTCTCTTTTCTCTCGCTAG

Homology

[Close]

BLAST of CmoCh07G010980 vs. Swiss-Prot
Match: RR31_ARATH (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana GN=RPS31 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.7e-28
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 1


Query: 24  SFSKSETLGTSLRTSTG--TSATSSPSSIPAVYCGRGDKKTEKGKRFKHSFGNARPRDKT 83
           S S SET G SL   T   + +TSS SSIP VYCGRGD+KT KGKRF HSFGNARPR+K+
Sbjct: 22  SSSHSETAGVSLSCFTHQFSLSTSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNKS 81

Query: 84  KGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 118
           KGRG  RVP PP+PPRKDKF++DEKIKI+IDESLFS
Sbjct: 82  KGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFS 117

[Close]

BLAST of CmoCh07G010980 vs. Swiss-Prot
Match: RR31_SPIOL (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea GN=RPS31 PE=1 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 1


Query: 23  FSFSKSETL-GTSLRTSTGTSATSSPSSIPA---VYCGRGDKKTEKGKRFKHSFGNARPR 82
           FSFS S+++ G SL +    S +SS S+ PA   +YCGRGD+KT KGKRF HSFGNARP+
Sbjct: 18  FSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRKTAKGKRFNHSFGNARPK 77

Query: 83  DKTKGRGTPRVPTPPSPPRKDKFD 103
           +K KGRG P+ P  P      K D
Sbjct: 78  NKNKGRGPPKAPIFPKGDPSQKED 101

[Close]

BLAST of CmoCh07G010980 vs. TrEMBL
Match: A0A0A0KXY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G308630 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 7.0e-42
Identity = 97/120 (80.83%), Postives = 103/120 (85.83%), Query Frame = 1


Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GTSATSSPSSIPAVYCG 60
           MASLPFGLLQA    P+ SPR FSFSKSE LGTSLR S+      S  SSPSSIPA+YCG
Sbjct: 1   MASLPFGLLQA----PSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60

Query: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 117
           RGDKKTE+GKRF HS+GNARPRDKTKGRGTPRVPTPPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 116

[Close]

BLAST of CmoCh07G010980 vs. TrEMBL
Match: A0A0B0NGY6_GOSAR (30S ribosomal S31, chloroplastic-like protein OS=Gossypium arboreum GN=F383_20354 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.3e-31
Identity = 86/121 (71.07%), Postives = 91/121 (75.21%), Query Frame = 1


Query: 1   MASLPFGLLQATFQSPTLS-PRCFSFSKSETLGTSLRTSTGT---SATSSPSSIPAVYCG 60
           MASL  G    + QS  LS     S S S+TLGTSL  S  +   SA SSPS IP VYCG
Sbjct: 1   MASLLLGAAPISAQSLNLSYVSRISSSHSQTLGTSLSVSNSSFSLSAASSPS-IPYVYCG 60

Query: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 118
           RGDKKTE+GKRF HSFGNARPRDK KGRG PRVP PPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSFGNARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of CmoCh07G010980 vs. TrEMBL
Match: A0A061ERJ0_THECC (Plastid-specific ribosomal protein 4 OS=Theobroma cacao GN=TCM_047048 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.6e-31
Identity = 84/120 (70.00%), Postives = 90/120 (75.00%), Query Frame = 1


Query: 1   MASLPFGLLQATFQSPTLSPRC-FSFSKSETLGTSLRTSTGTSA--TSSPSSIPAVYCGR 60
           MASL  G      QS  LS     S S S+TLGTSL  ST + +  T+S  SIP VYCGR
Sbjct: 1   MASLLLGAAPVPAQSVNLSSLSRISSSHSQTLGTSLSVSTSSVSLSTASSPSIPYVYCGR 60

Query: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 118
           GDKKT+KGKRF HSFGNARPR+K KGRG PRVP PPSPPRKDKFDDDEKIKIEIDESLFS
Sbjct: 61  GDKKTKKGKRFNHSFGNARPRNKKKGRGPPRVPIPPSPPRKDKFDDDEKIKIEIDESLFS 120

[Close]

BLAST of CmoCh07G010980 vs. TrEMBL
Match: A0A0D2MGA3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G262200 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.3e-31
Identity = 85/121 (70.25%), Postives = 91/121 (75.21%), Query Frame = 1


Query: 1   MASLPFGLLQATFQSPTLSPRC-FSFSKSETLGTSLRTSTGT---SATSSPSSIPAVYCG 60
           MASL  G    + QS  LS     S S S+TLGTSL  S  +   SA SSPS IP VYCG
Sbjct: 1   MASLLLGAAPISAQSLNLSSVSRISSSHSQTLGTSLSVSNSSFSLSAASSPS-IPYVYCG 60

Query: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 118
           RGDKKTE+GKRF HSFGNARPRDK KGRG PRVP PP+PPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSFGNARPRDKKKGRGPPRVPVPPAPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of CmoCh07G010980 vs. TrEMBL
Match: W9S307_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015587 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.2e-30
Identity = 80/122 (65.57%), Postives = 91/122 (74.59%), Query Frame = 1


Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSL-----RTSTGTSATSSPSSIPAVYC 60
           MASL  G L    QS  L+ R  SFS+S+TL TSL      +S  + + +SP S P+VYC
Sbjct: 1   MASLLLGSLPIPSQSLPLASR-ISFSQSQTLATSLPSFALSSSFSSISATSPPSFPSVYC 60

Query: 61  GRGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESL 118
           GRGDKKTE+GKRF HS+GNARPR+K KGRG PRVP PPSPPRKDKFD D KIKIEIDESL
Sbjct: 61  GRGDKKTERGKRFNHSYGNARPRNKKKGRGPPRVPVPPSPPRKDKFDSDAKIKIEIDESL 120

[Close]

BLAST of CmoCh07G010980 vs. TAIR10
Match: AT2G38140.1 (AT2G38140.1 plastid-specific ribosomal protein 4)

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-29
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 1


Query: 24  SFSKSETLGTSLRTSTG--TSATSSPSSIPAVYCGRGDKKTEKGKRFKHSFGNARPRDKT 83
           S S SET G SL   T   + +TSS SSIP VYCGRGD+KT KGKRF HSFGNARPR+K+
Sbjct: 22  SSSHSETAGVSLSCFTHQFSLSTSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNKS 81

Query: 84  KGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 118
           KGRG  RVP PP+PPRKDKF++DEKIKI+IDESLFS
Sbjct: 82  KGRGPERVPVPPAPPRKDKFENDEKIKIDIDESLFS 117

[Close]

BLAST of CmoCh07G010980 vs. NCBI nr
Match: gi|659069340|ref|XP_008449316.1| (PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 9.7e-45
Identity = 100/121 (82.64%), Postives = 106/121 (87.60%), Query Frame = 1


Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GTSATSSPSSIPAVYCG 60
           M SLPFGLLQA  QSP+L+P  FSFSKSETLGTSLR S+      S  SSPSSIPAVYCG
Sbjct: 1   MGSLPFGLLQAPSQSPSLNPHYFSFSKSETLGTSLRASSTASLAISTPSSPSSIPAVYCG 60

Query: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 118
           RGDKKTE+GKRF HS+GNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of CmoCh07G010980 vs. NCBI nr
Match: gi|449460301|ref|XP_004147884.1| (PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 1.0e-41
Identity = 97/120 (80.83%), Postives = 103/120 (85.83%), Query Frame = 1


Query: 1   MASLPFGLLQATFQSPTLSPRCFSFSKSETLGTSLRTST----GTSATSSPSSIPAVYCG 60
           MASLPFGLLQA    P+ SPR FSFSKSE LGTSLR S+      S  SSPSSIPA+YCG
Sbjct: 1   MASLPFGLLQA----PSQSPRFFSFSKSEALGTSLRASSTASLAISTPSSPSSIPAIYCG 60

Query: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 117
           RGDKKTE+GKRF HS+GNARPRDKTKGRGTPRVPTPPSPPRKDKFDD+EKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSYGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDNEKIKIEIDESLF 116

[Close]

BLAST of CmoCh07G010980 vs. NCBI nr
Match: gi|728832677|gb|KHG12120.1| (30S ribosomal S31, chloroplastic -like protein [Gossypium arboreum])

HSP 1 Score: 142.1 bits (357), Expect = 6.1e-31
Identity = 86/121 (71.07%), Postives = 91/121 (75.21%), Query Frame = 1


Query: 1   MASLPFGLLQATFQSPTLS-PRCFSFSKSETLGTSLRTSTGT---SATSSPSSIPAVYCG 60
           MASL  G    + QS  LS     S S S+TLGTSL  S  +   SA SSPS IP VYCG
Sbjct: 1   MASLLLGAAPISAQSLNLSYVSRISSSHSQTLGTSLSVSNSSFSLSAASSPS-IPYVYCG 60

Query: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 118
           RGDKKTE+GKRF HSFGNARPRDK KGRG PRVP PPSPPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSFGNARPRDKKKGRGPPRVPVPPSPPRKDKFDDDEKIKIEIDESLF 120

[Close]

BLAST of CmoCh07G010980 vs. NCBI nr
Match: gi|590628595|ref|XP_007026761.1| (Plastid-specific ribosomal protein 4 [Theobroma cacao])

HSP 1 Score: 141.7 bits (356), Expect = 8.0e-31
Identity = 84/120 (70.00%), Postives = 90/120 (75.00%), Query Frame = 1


Query: 1   MASLPFGLLQATFQSPTLSPRC-FSFSKSETLGTSLRTSTGTSA--TSSPSSIPAVYCGR 60
           MASL  G      QS  LS     S S S+TLGTSL  ST + +  T+S  SIP VYCGR
Sbjct: 1   MASLLLGAAPVPAQSVNLSSLSRISSSHSQTLGTSLSVSTSSVSLSTASSPSIPYVYCGR 60

Query: 61  GDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLFS 118
           GDKKT+KGKRF HSFGNARPR+K KGRG PRVP PPSPPRKDKFDDDEKIKIEIDESLFS
Sbjct: 61  GDKKTKKGKRFNHSFGNARPRNKKKGRGPPRVPIPPSPPRKDKFDDDEKIKIEIDESLFS 120

[Close]

BLAST of CmoCh07G010980 vs. NCBI nr
Match: gi|823137387|ref|XP_012468485.1| (PREDICTED: 30S ribosomal protein S31, chloroplastic [Gossypium raimondii])

HSP 1 Score: 141.4 bits (355), Expect = 1.0e-30
Identity = 85/121 (70.25%), Postives = 91/121 (75.21%), Query Frame = 1


Query: 1   MASLPFGLLQATFQSPTLSPRC-FSFSKSETLGTSLRTSTGT---SATSSPSSIPAVYCG 60
           MASL  G    + QS  LS     S S S+TLGTSL  S  +   SA SSPS IP VYCG
Sbjct: 1   MASLLLGAAPISAQSLNLSSVSRISSSHSQTLGTSLSVSNSSFSLSAASSPS-IPYVYCG 60

Query: 61  RGDKKTEKGKRFKHSFGNARPRDKTKGRGTPRVPTPPSPPRKDKFDDDEKIKIEIDESLF 118
           RGDKKTE+GKRF HSFGNARPRDK KGRG PRVP PP+PPRKDKFDDDEKIKIEIDESLF
Sbjct: 61  RGDKKTERGKRFNHSFGNARPRDKKKGRGPPRVPVPPAPPRKDKFDDDEKIKIEIDESLF 120

The following BLAST results are available for this feature:

BLAST of CmoCh07G010980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR31_ARATH	3.7e-28	71.88	30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana GN=RPS31 PE=1 S...	[more]
RR31_SPIOL	1.3e-12	53.57	30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea GN=RPS31 PE=1 SV=2	[more]

BLAST of CmoCh07G010980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXY4_CUCSA	7.0e-42	80.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G308630 PE=4 SV=1	[more]
A0A0B0NGY6_GOSAR	4.3e-31	71.07	30S ribosomal S31, chloroplastic-like protein OS=Gossypium arboreum GN=F383_2035...	[more]
A0A061ERJ0_THECC	5.6e-31	70.00	Plastid-specific ribosomal protein 4 OS=Theobroma cacao GN=TCM_047048 PE=4 SV=1	[more]
A0A0D2MGA3_GOSRA	7.3e-31	70.25	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G262200 PE=4 SV=1	[more]
W9S307_9ROSA	6.2e-30	65.57	Uncharacterized protein OS=Morus notabilis GN=L484_015587 PE=4 SV=1	[more]

BLAST of CmoCh07G010980 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G38140.1	2.1e-29	71.88	plastid-specific ribosomal protein 4	[more]

BLAST of CmoCh07G010980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069340\|ref\|XP_008449316.1\|	9.7e-45	82.64	PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo]	[more]
gi\|449460301\|ref\|XP_004147884.1\|	1.0e-41	80.83	PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis sativus]	[more]
gi\|728832677\|gb\|KHG12120.1\|	6.1e-31	71.07	30S ribosomal S31, chloroplastic -like protein [Gossypium arboreum]	[more]
gi\|590628595\|ref\|XP_007026761.1\|	8.0e-31	70.00	Plastid-specific ribosomal protein 4 [Theobroma cacao]	[more]
gi\|823137387\|ref\|XP_012468485.1\|	1.0e-30	70.25	PREDICTED: 30S ribosomal protein S31, chloroplastic [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G010980.1	CmoCh07G010980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34550	FAMILY NOT NAMED	coord: 42..117 score: 4.6
None	No IPR available	PANTHER	PTHR34550:SF1	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 42..117 score: 4.6
None	No IPR available	PFAM	PF17067	RPS31	coord: 20..99 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G010980	Cucsa.067170	Cucumber (Gy14) v1	cgycmoB0102
CmoCh07G010980	Cla018111	Watermelon (97103) v1	cmowmB825
CmoCh07G010980	Csa4G308630	Cucumber (Chinese Long) v2	cmocuB847
CmoCh07G010980	MELO3C003245	Melon (DHL92) v3.5.1	cmomeB784
CmoCh07G010980	ClCG04G007070	Watermelon (Charleston Gray)	cmowcgB769
CmoCh07G010980	CSPI04G15820	Wild cucumber (PI 183967)	cmocpiB856
CmoCh07G010980	Lsi01G015400	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G010980	Cp4.1LG19g02810	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G010980	MELO3C003245.2	Melon (DHL92) v3.6.1	cmomedB887
CmoCh07G010980	CsaV3_4G026180	Cucumber (Chinese Long) v3	cmocucB0999
CmoCh07G010980	Bhi03G001678	Wax gourd	cmowgoB1052
CmoCh07G010980	CsGy4G015130	Cucumber (Gy14) v2	cgybcmoB537
CmoCh07G010980	Carg19994	Silver-seed gourd	carcmoB0757
CmoCh07G010980	Carg13274	Silver-seed gourd	carcmoB0795

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G010980	CmoCh03G003690	Cucurbita moschata (Rifu)	cmocmoB460

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G010980	Wax gourd	cmowgoB1040
CmoCh07G010980	Wax gourd	cmowgoB1039
CmoCh07G010980	Wax gourd	cmowgoB1046
CmoCh07G010980	Cucurbita moschata (Rifu)	cmocmoB228
CmoCh07G010980	Cucurbita moschata (Rifu)	cmocmoB479
CmoCh07G010980	Cucurbita moschata (Rifu)	cmocmoB483
CmoCh07G010980	Cucumber (Gy14) v1	cgycmoB0508
CmoCh07G010980	Cucurbita maxima (Rimu)	cmacmoB275
CmoCh07G010980	Cucurbita maxima (Rimu)	cmacmoB673
CmoCh07G010980	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G010980	Cucurbita maxima (Rimu)	cmacmoB836
CmoCh07G010980	Cucumber (Chinese Long) v2	cmocuB843
CmoCh07G010980	Melon (DHL92) v3.5.1	cmomeB776
CmoCh07G010980	Watermelon (Charleston Gray)	cmowcgB752
CmoCh07G010980	Watermelon (97103) v1	cmowmB804
CmoCh07G010980	Cucurbita pepo (Zucchini)	cmocpeB821
CmoCh07G010980	Cucurbita pepo (Zucchini)	cmocpeB802
CmoCh07G010980	Cucurbita pepo (Zucchini)	cmocpeB832
CmoCh07G010980	Bottle gourd (USVL1VR-Ls)	cmolsiB787
CmoCh07G010980	Bottle gourd (USVL1VR-Ls)	cmolsiB788
CmoCh07G010980	Cucumber (Gy14) v2	cgybcmoB418
CmoCh07G010980	Cucumber (Gy14) v2	cgybcmoB842
CmoCh07G010980	Melon (DHL92) v3.6.1	cmomedB881
CmoCh07G010980	Silver-seed gourd	carcmoB0228
CmoCh07G010980	Silver-seed gourd	carcmoB1344
CmoCh07G010980	Cucumber (Chinese Long) v3	cmocucB0997
CmoCh07G010980	Cucumber (Chinese Long) v3	cmocucB1017
CmoCh07G010980	Watermelon (97103) v2	cmowmbB867
CmoCh07G010980	Watermelon (97103) v2	cmowmbB850
CmoCh07G010980	Watermelon (97103) v2	cmowmbB853