CmoCh07G009670 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G009670
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Descriptionstructural constituent of ribosome;protein binding
LocationCmo_Chr07 : 4732381 .. 4733431 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAGAGTGAACAGGAAGGAAATCATAGGGCGAAGAGAAAGAAGAAGATATTCCTTTCTTTACGGGAGAGTCAATTCGTCATAGAAAGAAGGAACCTGCTTTCTACTATAGATGATCGAGAAAGAATCAATCTCTTCCGAACGACCGATGGCTTGGTAAGCAAGCAACCTGTTATGTAGGCCCCAACTCCAAGTTCTTTCTCTTCTTTCTTTTTGAGTTTAGTGAGAGTGAATCAAAACAATTGTCCAAGATTGCGTCATCGAGCACGCGACGCGCATAGTCTGAAGGGTTGTCTCCTCTTCAACATTTCGACTACTACTTACTTGCCTTCCCTTTTCAGAGATCTCCTTGTTCTCTTCCCAGATTTGACTCGATTTCATTAGTTCATAAGAATCAGTACCAAAGGAATGAATCAAAGATAGAAAGAAAAAGGCTATCCATCCTCAGCCGTATAGGGAAGAGAGGGAAAACTGTCTTTCTTTGTCGGAAATGATGATGCGTATGTAACTCCACAGTAAGAAAAGTGGATTCTTTGATATTTGCTTTCTGTATTATTTCGAAATTCAAGGATTAATTAATGAACAGGGAATGGATGAATAATAGTATCCATATAACTTTACATAGAACTTATGTTTGATATAAATATTAGTAGTGTAGATGTAGAGAGGTAACGAATGAAGTGAGTTACCACCGGAGGCAAGGGTAGGCGGAAGACAGGGGGTTTGTAGGGAACTACTAAGGGAACTACTATTTGGAGGGAACTGCTAAGAGAACTACTAAGGGAACTACTAAGGGAACTACTATTTGGAGGGAACTGCTAAGAGAACTACTAAGGGAACTACTAAGGGAACTACTAAAGGGATGTGCATAAAAAGGTCTGTATTTGCCCGCGAAAACGACGACCGGGAAAAGCAAAACGAAATTAGGATTTGGCCGAAAAAGAAGCAAGACTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCGGGGCCTTCAAGCATCCGAAATATGCCGGAGTT

mRNA sequence

ATGAATGAGAGTGAACAGGAAGGAAATCATAGGGCGAAGAGAAAGAAGAAGATATTCCTTTCTTTACGGGAGAGTCAATTCGTCATAGAAAGAAGGAACCTGCTTTCTACTATAGATGATCGAGAAAGAATCAATCTCTTCCGAACGACCGATGGCTTGGTAAGCAAGCAACCTGTTATGTCTGTATTTGCCCGCGAAAACGACGACCGGGAAAAGCAAAACGAAATTAGGATTTGGCCGAAAAAGAAGCAAGACTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCGGGGCCTTCAAGCATCCGAAATATGCCGGAGTT

Coding sequence (CDS)

ATGAATGAGAGTGAACAGGAAGGAAATCATAGGGCGAAGAGAAAGAAGAAGATATTCCTTTCTTTACGGGAGAGTCAATTCGTCATAGAAAGAAGGAACCTGCTTTCTACTATAGATGATCGAGAAAGAATCAATCTCTTCCGAACGACCGATGGCTTGGTAAGCAAGCAACCTGTTATGTCTGTATTTGCCCGCGAAAACGACGACCGGGAAAAGCAAAACGAAATTAGGATTTGGCCGAAAAAGAAGCAAGACTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCGGGGCCTTCAAGCATCCGAAATATGCCGGAGTT
Homology
[Close]
BLAST of CmoCh07G009670 vs. Swiss-Prot
Match: RT03_OENBE (Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-20
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPS KKNLSKSLRVSGAFKHPKYAGV
Sbjct: 137 DDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLSKSLRVSGAFKHPKYAGV 186

[Close]
BLAST of CmoCh07G009670 vs. Swiss-Prot
Match: RT03_PETHY (Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-20
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPS KKNLSKSLRVSGAFKHPKYAG+
Sbjct: 136 DDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLSKSLRVSGAFKHPKYAGI 185

[Close]
BLAST of CmoCh07G009670 vs. Swiss-Prot
Match: RT03_ORYSJ (Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica GN=RPS3 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 66  ENDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           E+ DREKQNEIRIWPKK Q YGYHDRSPSRKKN SKSLRVSGAFKHPKYAGV
Sbjct: 132 ESIDREKQNEIRIWPKKMQRYGYHDRSPSRKKNFSKSLRVSGAFKHPKYAGV 183

[Close]
BLAST of CmoCh07G009670 vs. Swiss-Prot
Match: RT03_MAIZE (Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-19
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 66  ENDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           E+ DREKQNEIRIWPKK Q YGYHDR+PSRKKN SKSLRVSGAFKHPKYAGV
Sbjct: 132 ESIDREKQNEIRIWPKKMQRYGYHDRTPSRKKNFSKSLRVSGAFKHPKYAGV 183

[Close]
BLAST of CmoCh07G009670 vs. Swiss-Prot
Match: RT03_BRANA (Ribosomal protein S3, mitochondrial OS=Brassica napus GN=RPS3 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.9e-18
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDR+KQNEIR WPKKKQ YGYHDR+PS KKNLSKSLR+SGAFKHPKY GV
Sbjct: 136 DDRKKQNEIRGWPKKKQRYGYHDRTPSIKKNLSKSLRISGAFKHPKYGGV 185

[Close]
BLAST of CmoCh07G009670 vs. TrEMBL
Match: E5DM03_CUCPE (Ribosomal protein S3 (Fragment) OS=Cucurbita pepo GN=rps3 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.4e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 84  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 133

[Close]
BLAST of CmoCh07G009670 vs. TrEMBL
Match: D5I3F1_CUCPE (Ribosomal protein S3 OS=Cucurbita pepo GN=rps3 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.2e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSK LRVSGAFKHPKYAGV
Sbjct: 138 DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKLLRVSGAFKHPKYAGV 187

[Close]
BLAST of CmoCh07G009670 vs. TrEMBL
Match: M9WG71_LIRTU (Ribosomal protein S3 OS=Liriodendron tulipifera GN=rps3 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 108 DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 157

[Close]
BLAST of CmoCh07G009670 vs. TrEMBL
Match: E5DM98_9MAGN (Ribosomal protein S3 (Fragment) OS=Meliosma squamulata GN=rps3 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 68  DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 117

[Close]
BLAST of CmoCh07G009670 vs. TrEMBL
Match: E5DM19_DRIWI (Ribosomal protein S3 (Fragment) OS=Drimys winteri GN=rps3 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 68  DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 117

[Close]
BLAST of CmoCh07G009670 vs. TAIR10
Match: ATMG00090.1 (ATMG00090.1 structural constituent of ribosome;protein binding)

HSP 1 Score: 92.0 bits (227), Expect = 2.5e-19
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDR+KQNEIR WPKKKQ YGYHDR PS KKNLSKSLR+SGAFKHPKYAGV
Sbjct: 138 DDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFKHPKYAGV 187

[Close]
BLAST of CmoCh07G009670 vs. NCBI nr
Match: gi|302748681|gb|ADL63821.1| (ribosomal protein S3, partial (mitochondrion) [Cucurbita pepo])

HSP 1 Score: 105.5 bits (262), Expect = 6.3e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 84  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 133

[Close]
BLAST of CmoCh07G009670 vs. NCBI nr
Match: gi|295311706|ref|YP_003587365.1| (ribosomal protein S3 [Cucurbita pepo])

HSP 1 Score: 103.2 bits (256), Expect = 3.1e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSK LRVSGAFKHPKYAGV
Sbjct: 138 DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKLLRVSGAFKHPKYAGV 187

[Close]
BLAST of CmoCh07G009670 vs. NCBI nr
Match: gi|25987150|gb|AAN75747.1|AF319171_2 (ribosomal protein S3 [Magnolia x soulangeana])

HSP 1 Score: 102.4 bits (254), Expect = 5.3e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 108 DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 157

[Close]
BLAST of CmoCh07G009670 vs. NCBI nr
Match: gi|302748796|gb|ADL63878.1| (ribosomal protein S3, partial (mitochondrion) [Hydrangea arborescens])

HSP 1 Score: 102.4 bits (254), Expect = 5.3e-19
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAG+
Sbjct: 68  DDREKQNEIRIWPKKKQGYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGI 117

[Close]
BLAST of CmoCh07G009670 vs. NCBI nr
Match: gi|484759966|ref|YP_007905727.1| (ribosomal protein S3 (mitochondrion) [Liriodendron tulipifera])

HSP 1 Score: 102.4 bits (254), Expect = 5.3e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 108 DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 157

The following BLAST results are available for this feature:
BLAST of CmoCh07G009670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RT03_OENBE2.2e-2096.00Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2[more]
RT03_PETHY2.8e-2094.00Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1[more]
RT03_ORYSJ1.1e-1990.38Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica GN=RPS3 PE=3... [more]
RT03_MAIZE2.4e-1988.46Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1[more]
RT03_BRANA5.9e-1886.00Ribosomal protein S3, mitochondrial OS=Brassica napus GN=RPS3 PE=3 SV=1[more]
BLAST of CmoCh07G009670 vs. TrEMBL
Match NameE-valueIdentityDescription
E5DM03_CUCPE4.4e-20100.00Ribosomal protein S3 (Fragment) OS=Cucurbita pepo GN=rps3 PE=3 SV=1[more]
D5I3F1_CUCPE2.2e-1998.00Ribosomal protein S3 OS=Cucurbita pepo GN=rps3 PE=3 SV=1[more]
M9WG71_LIRTU3.7e-1998.00Ribosomal protein S3 OS=Liriodendron tulipifera GN=rps3 PE=3 SV=1[more]
E5DM98_9MAGN3.7e-1998.00Ribosomal protein S3 (Fragment) OS=Meliosma squamulata GN=rps3 PE=4 SV=1[more]
E5DM19_DRIWI3.7e-1998.00Ribosomal protein S3 (Fragment) OS=Drimys winteri GN=rps3 PE=3 SV=1[more]
BLAST of CmoCh07G009670 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00090.12.5e-1988.00ATMG00090.1 structural constituent of ribosome;protein binding[more]
BLAST of CmoCh07G009670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|302748681|gb|ADL63821.1|6.3e-20100.00ribosomal protein S3, partial (mitochondrion) [Cucurbita pepo][more]
gi|295311706|ref|YP_003587365.1|3.1e-1998.00ribosomal protein S3 [Cucurbita pepo][more]
gi|25987150|gb|AAN75747.1|AF319171_25.3e-1998.00ribosomal protein S3 [Magnolia x soulangeana][more]
gi|302748796|gb|ADL63878.1|5.3e-1996.00ribosomal protein S3, partial (mitochondrion) [Hydrangea arborescens][more]
gi|484759966|ref|YP_007905727.1|5.3e-1998.00ribosomal protein S3 (mitochondrion) [Liriodendron tulipifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G009670.1CmoCh07G009670.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G009670Cucumber (Chinese Long) v3cmocucB0997
CmoCh07G009670Cucumber (Chinese Long) v3cmocucB1020
CmoCh07G009670Cucumber (Chinese Long) v3cmocucB1021
CmoCh07G009670Watermelon (97103) v2cmowmbB867
CmoCh07G009670Watermelon (97103) v2cmowmbB850
CmoCh07G009670Watermelon (97103) v2cmowmbB854
CmoCh07G009670Wax gourdcmowgoB1037
CmoCh07G009670Wax gourdcmowgoB1049
CmoCh07G009670Cucurbita moschata (Rifu)cmocmoB228
CmoCh07G009670Cucurbita moschata (Rifu)cmocmoB425
CmoCh07G009670Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G009670Cucurbita moschata (Rifu)cmocmoB476
CmoCh07G009670Cucurbita moschata (Rifu)cmocmoB483
CmoCh07G009670Cucumber (Gy14) v1cgycmoB0326
CmoCh07G009670Cucumber (Gy14) v1cgycmoB0845
CmoCh07G009670Cucumber (Gy14) v1cgycmoB1071
CmoCh07G009670Cucurbita maxima (Rimu)cmacmoB275
CmoCh07G009670Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G009670Cucurbita maxima (Rimu)cmacmoB752
CmoCh07G009670Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G009670Cucurbita maxima (Rimu)cmacmoB836
CmoCh07G009670Wild cucumber (PI 183967)cmocpiB853
CmoCh07G009670Wild cucumber (PI 183967)cmocpiB874
CmoCh07G009670Cucumber (Chinese Long) v2cmocuB843
CmoCh07G009670Cucumber (Chinese Long) v2cmocuB865
CmoCh07G009670Melon (DHL92) v3.5.1cmomeB776
CmoCh07G009670Melon (DHL92) v3.5.1cmomeB784
CmoCh07G009670Watermelon (Charleston Gray)cmowcgB752
CmoCh07G009670Watermelon (Charleston Gray)cmowcgB769
CmoCh07G009670Watermelon (97103) v1cmowmB804
CmoCh07G009670Watermelon (97103) v1cmowmB825
CmoCh07G009670Watermelon (97103) v1cmowmB832
CmoCh07G009670Cucurbita pepo (Zucchini)cmocpeB821
CmoCh07G009670Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G009670Cucurbita pepo (Zucchini)cmocpeB812
CmoCh07G009670Cucurbita pepo (Zucchini)cmocpeB814
CmoCh07G009670Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G009670Bottle gourd (USVL1VR-Ls)cmolsiB773
CmoCh07G009670Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G009670Bottle gourd (USVL1VR-Ls)cmolsiB787
CmoCh07G009670Cucumber (Gy14) v2cgybcmoB418
CmoCh07G009670Cucumber (Gy14) v2cgybcmoB844
CmoCh07G009670Cucumber (Gy14) v2cgybcmoB843
CmoCh07G009670Melon (DHL92) v3.6.1cmomedB873
CmoCh07G009670Melon (DHL92) v3.6.1cmomedB881
CmoCh07G009670Melon (DHL92) v3.6.1cmomedB887
CmoCh07G009670Silver-seed gourdcarcmoB0228
CmoCh07G009670Silver-seed gourdcarcmoB0469
CmoCh07G009670Silver-seed gourdcarcmoB0566
CmoCh07G009670Silver-seed gourdcarcmoB0941