CmoCh07G009670.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G009670.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Descriptionstructural constituent of ribosome;protein binding
LocationCmo_Chr07 : 4732381 .. 4733431 (+)
Sequence length351
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAGAGTGAACAGGAAGGAAATCATAGGGCGAAGAGAAAGAAGAAGATATTCCTTTCTTTACGGGAGAGTCAATTCGTCATAGAAAGAAGGAACCTGCTTTCTACTATAGATGATCGAGAAAGAATCAATCTCTTCCGAACGACCGATGGCTTGGTAAGCAAGCAACCTGTTATGTAGGCCCCAACTCCAAGTTCTTTCTCTTCTTTCTTTTTGAGTTTAGTGAGAGTGAATCAAAACAATTGTCCAAGATTGCGTCATCGAGCACGCGACGCGCATAGTCTGAAGGGTTGTCTCCTCTTCAACATTTCGACTACTACTTACTTGCCTTCCCTTTTCAGAGATCTCCTTGTTCTCTTCCCAGATTTGACTCGATTTCATTAGTTCATAAGAATCAGTACCAAAGGAATGAATCAAAGATAGAAAGAAAAAGGCTATCCATCCTCAGCCGTATAGGGAAGAGAGGGAAAACTGTCTTTCTTTGTCGGAAATGATGATGCGTATGTAACTCCACAGTAAGAAAAGTGGATTCTTTGATATTTGCTTTCTGTATTATTTCGAAATTCAAGGATTAATTAATGAACAGGGAATGGATGAATAATAGTATCCATATAACTTTACATAGAACTTATGTTTGATATAAATATTAGTAGTGTAGATGTAGAGAGGTAACGAATGAAGTGAGTTACCACCGGAGGCAAGGGTAGGCGGAAGACAGGGGGTTTGTAGGGAACTACTAAGGGAACTACTATTTGGAGGGAACTGCTAAGAGAACTACTAAGGGAACTACTAAGGGAACTACTATTTGGAGGGAACTGCTAAGAGAACTACTAAGGGAACTACTAAGGGAACTACTAAAGGGATGTGCATAAAAAGGTCTGTATTTGCCCGCGAAAACGACGACCGGGAAAAGCAAAACGAAATTAGGATTTGGCCGAAAAAGAAGCAAGACTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCGGGGCCTTCAAGCATCCGAAATATGCCGGAGTT

mRNA sequence

ATGAATGAGAGTGAACAGGAAGGAAATCATAGGGCGAAGAGAAAGAAGAAGATATTCCTTTCTTTACGGGAGAGTCAATTCGTCATAGAAAGAAGGAACCTGCTTTCTACTATAGATGATCGAGAAAGAATCAATCTCTTCCGAACGACCGATGGCTTGGTAAGCAAGCAACCTGTTATGTCTGTATTTGCCCGCGAAAACGACGACCGGGAAAAGCAAAACGAAATTAGGATTTGGCCGAAAAAGAAGCAAGACTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCGGGGCCTTCAAGCATCCGAAATATGCCGGAGTT

Coding sequence (CDS)

ATGAATGAGAGTGAACAGGAAGGAAATCATAGGGCGAAGAGAAAGAAGAAGATATTCCTTTCTTTACGGGAGAGTCAATTCGTCATAGAAAGAAGGAACCTGCTTTCTACTATAGATGATCGAGAAAGAATCAATCTCTTCCGAACGACCGATGGCTTGGTAAGCAAGCAACCTGTTATGTCTGTATTTGCCCGCGAAAACGACGACCGGGAAAAGCAAAACGAAATTAGGATTTGGCCGAAAAAGAAGCAAGACTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCGGGGCCTTCAAGCATCCGAAATATGCCGGAGTT
Homology
[Close]
BLAST of CmoCh07G009670.1 vs. Swiss-Prot
Match: RT03_OENBE (Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-20
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPS KKNLSKSLRVSGAFKHPKYAGV
Sbjct: 137 DDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLSKSLRVSGAFKHPKYAGV 186

[Close]
BLAST of CmoCh07G009670.1 vs. Swiss-Prot
Match: RT03_PETHY (Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-20
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPS KKNLSKSLRVSGAFKHPKYAG+
Sbjct: 136 DDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLSKSLRVSGAFKHPKYAGI 185

[Close]
BLAST of CmoCh07G009670.1 vs. Swiss-Prot
Match: RT03_ORYSJ (Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica GN=RPS3 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 47/52 (90.38%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 66  ENDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           E+ DREKQNEIRIWPKK Q YGYHDRSPSRKKN SKSLRVSGAFKHPKYAGV
Sbjct: 132 ESIDREKQNEIRIWPKKMQRYGYHDRSPSRKKNFSKSLRVSGAFKHPKYAGV 183

[Close]
BLAST of CmoCh07G009670.1 vs. Swiss-Prot
Match: RT03_MAIZE (Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-19
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 66  ENDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           E+ DREKQNEIRIWPKK Q YGYHDR+PSRKKN SKSLRVSGAFKHPKYAGV
Sbjct: 132 ESIDREKQNEIRIWPKKMQRYGYHDRTPSRKKNFSKSLRVSGAFKHPKYAGV 183

[Close]
BLAST of CmoCh07G009670.1 vs. Swiss-Prot
Match: RT03_BRANA (Ribosomal protein S3, mitochondrial OS=Brassica napus GN=RPS3 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.9e-18
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDR+KQNEIR WPKKKQ YGYHDR+PS KKNLSKSLR+SGAFKHPKY GV
Sbjct: 136 DDRKKQNEIRGWPKKKQRYGYHDRTPSIKKNLSKSLRISGAFKHPKYGGV 185

[Close]
BLAST of CmoCh07G009670.1 vs. TrEMBL
Match: E5DM03_CUCPE (Ribosomal protein S3 (Fragment) OS=Cucurbita pepo GN=rps3 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.4e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 84  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 133

[Close]
BLAST of CmoCh07G009670.1 vs. TrEMBL
Match: D5I3F1_CUCPE (Ribosomal protein S3 OS=Cucurbita pepo GN=rps3 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.2e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSK LRVSGAFKHPKYAGV
Sbjct: 138 DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKLLRVSGAFKHPKYAGV 187

[Close]
BLAST of CmoCh07G009670.1 vs. TrEMBL
Match: M9WG71_LIRTU (Ribosomal protein S3 OS=Liriodendron tulipifera GN=rps3 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 108 DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 157

[Close]
BLAST of CmoCh07G009670.1 vs. TrEMBL
Match: E5DM98_9MAGN (Ribosomal protein S3 (Fragment) OS=Meliosma squamulata GN=rps3 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 68  DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 117

[Close]
BLAST of CmoCh07G009670.1 vs. TrEMBL
Match: E5DM19_DRIWI (Ribosomal protein S3 (Fragment) OS=Drimys winteri GN=rps3 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 68  DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 117

[Close]
BLAST of CmoCh07G009670.1 vs. TAIR10
Match: ATMG00090.1 (ATMG00090.1 structural constituent of ribosome;protein binding)

HSP 1 Score: 92.0 bits (227), Expect = 2.5e-19
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDR+KQNEIR WPKKKQ YGYHDR PS KKNLSKSLR+SGAFKHPKYAGV
Sbjct: 138 DDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFKHPKYAGV 187

[Close]
BLAST of CmoCh07G009670.1 vs. NCBI nr
Match: gi|302748681|gb|ADL63821.1| (ribosomal protein S3, partial (mitochondrion) [Cucurbita pepo])

HSP 1 Score: 105.5 bits (262), Expect = 6.3e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 84  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 133

[Close]
BLAST of CmoCh07G009670.1 vs. NCBI nr
Match: gi|295311706|ref|YP_003587365.1| (ribosomal protein S3 [Cucurbita pepo])

HSP 1 Score: 103.2 bits (256), Expect = 3.1e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSK LRVSGAFKHPKYAGV
Sbjct: 138 DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKLLRVSGAFKHPKYAGV 187

[Close]
BLAST of CmoCh07G009670.1 vs. NCBI nr
Match: gi|25987150|gb|AAN75747.1|AF319171_2 (ribosomal protein S3 [Magnolia x soulangeana])

HSP 1 Score: 102.4 bits (254), Expect = 5.3e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 108 DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 157

[Close]
BLAST of CmoCh07G009670.1 vs. NCBI nr
Match: gi|302748796|gb|ADL63878.1| (ribosomal protein S3, partial (mitochondrion) [Hydrangea arborescens])

HSP 1 Score: 102.4 bits (254), Expect = 5.3e-19
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAG+
Sbjct: 68  DDREKQNEIRIWPKKKQGYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGI 117

[Close]
BLAST of CmoCh07G009670.1 vs. NCBI nr
Match: gi|484759966|ref|YP_007905727.1| (ribosomal protein S3 (mitochondrion) [Liriodendron tulipifera])

HSP 1 Score: 102.4 bits (254), Expect = 5.3e-19
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 

Query: 68  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 118
           DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Sbjct: 108 DDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV 157

The following BLAST results are available for this feature:
BLAST of CmoCh07G009670.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RT03_OENBE2.2e-2096.00Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2[more]
RT03_PETHY2.8e-2094.00Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1[more]
RT03_ORYSJ1.1e-1990.38Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica GN=RPS3 PE=3... [more]
RT03_MAIZE2.4e-1988.46Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1[more]
RT03_BRANA5.9e-1886.00Ribosomal protein S3, mitochondrial OS=Brassica napus GN=RPS3 PE=3 SV=1[more]
BLAST of CmoCh07G009670.1 vs. TrEMBL
Match NameE-valueIdentityDescription
E5DM03_CUCPE4.4e-20100.00Ribosomal protein S3 (Fragment) OS=Cucurbita pepo GN=rps3 PE=3 SV=1[more]
D5I3F1_CUCPE2.2e-1998.00Ribosomal protein S3 OS=Cucurbita pepo GN=rps3 PE=3 SV=1[more]
M9WG71_LIRTU3.7e-1998.00Ribosomal protein S3 OS=Liriodendron tulipifera GN=rps3 PE=3 SV=1[more]
E5DM98_9MAGN3.7e-1998.00Ribosomal protein S3 (Fragment) OS=Meliosma squamulata GN=rps3 PE=4 SV=1[more]
E5DM19_DRIWI3.7e-1998.00Ribosomal protein S3 (Fragment) OS=Drimys winteri GN=rps3 PE=3 SV=1[more]
BLAST of CmoCh07G009670.1 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00090.12.5e-1988.00ATMG00090.1 structural constituent of ribosome;protein binding[more]
BLAST of CmoCh07G009670.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|302748681|gb|ADL63821.1|6.3e-20100.00ribosomal protein S3, partial (mitochondrion) [Cucurbita pepo][more]
gi|295311706|ref|YP_003587365.1|3.1e-1998.00ribosomal protein S3 [Cucurbita pepo][more]
gi|25987150|gb|AAN75747.1|AF319171_25.3e-1998.00ribosomal protein S3 [Magnolia x soulangeana][more]
gi|302748796|gb|ADL63878.1|5.3e-1996.00ribosomal protein S3, partial (mitochondrion) [Hydrangea arborescens][more]
gi|484759966|ref|YP_007905727.1|5.3e-1998.00ribosomal protein S3 (mitochondrion) [Liriodendron tulipifera][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh07G009670CmoCh07G009670gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh07G009670.1CmoCh07G009670.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh07G009670.1.exon.1CmoCh07G009670.1.exon.1exon
CmoCh07G009670.1.exon.2CmoCh07G009670.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh07G009670.1.CDS.1CmoCh07G009670.1.CDS.1CDS
CmoCh07G009670.1.CDS.2CmoCh07G009670.1.CDS.2CDS