CmoCh07G003170 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G003170
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionLeucyl-tRNA synthetase
LocationCmo_Chr07 : 1514233 .. 1516146 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGATTACTCTGTTTCGCACCCAATCGGCTGGAATGCATTTGGATTGCCTGCGGAACAATAGGCTATTGAGGTTTGCTCTTCCAGCTTCCAGTTAGCTTACAATGCCTGAATTTGATGATTTTACACCCACGGGAACAGGGGAAGCTCCACTTGCAAAAGCAGATTCTTGGGTATTTCTCTATTTTGTTTGTTGACTTCGTCATTAGTTCATTCCCAAAGGAGATCTCTTAAGATTTATCCGGAAATGTTGCTAATTTTACCTGTGAATGCATCTGAATATTGGAAAGAGATATCAACCAAACTATAATTTAACATTAAAGTTCACCTTCCAAGTGCTGCATAAATAGGTTCAGGTTTCACATAAATAACCCATTTGATGGGTTATATTAACCACTACAATTGGCATATTGAATTTGTGTTTTATGAATGCAGTTGCTCCCTTGACTAAATGATGATTCAAATTCCAGGTAACCGAAGAAGTTGAAGGGACACGGTTCAACACAGGAATCTCAGCTACTATGGAGTTCGTTAACATGGCATATAGGGTTATTGGACTACATTAAAAGGTGAGGGGATTCGAACCTATAACCTCTTGGTCAATGGCATATACGTTAACGATATGAACTATGGTTGGCATATATCAAGAGATTAAAAAACTTGATATCTAGATCCAATTTTGACAGAAATGTTATATTTGGATATTAATGTTTAAGATTACATTATTTCTTTGCCATTTCACTTCTCTTCCTATCAGACTGATGCCATTTTTTAGCTAGGGACAGATATCCGAGGTCTATTGTTGAAGCATTCACTTTGTTGCTTTCACTGTACGCACCTCGCTTGGCTGAGGAACTTTGTTCTTGGTTAGGACACACAGAATTGTTGGCATACGAGTCCTTCCCCGAGGTGTGACTTCTTATCCCCCTTGCCTCCCTTGAGTACTTGAATATTTAAAGGCTTTATGGTTGTGTTTGAGCCTTCTTGCATCTACAAGGGGTATGCATCAGGTGTGTTAGCCACTTGAGTCCTTGTGAAGAATCATATTGGCATCAAATTTTGAAAGCAAATTAAGATTTTGGGATTTGATAGGTTCATCTCGCTTTTACTTAAAACATAAAGAAAATTTAAAATAGAAATATAATTCACCTTCAAGCAGGAGAAATAGTGTTCTACCTGAAGAACTCCACAATTGTCCTACCTGTTCAGATCAATGGTTGAGGAAACATGTACAGAAGAGGAAGCTTTCCAGCTAGCAGAACAGGATGAAAAAGTCTCCATGTGGCCTGCTGGCAAGATCTTGAATGTTATAATGAATCGTCAAGGCTCCAATGTGGCCTGCTCAAACTGTACAATTTGCTGCAACCACCGAAATCTCTCGCAGATGGTATAATAAGCCGATGGACGCATGCAACAGATTATCAATGAAGTCTTGTGCTTTAATCGGAATGATTGAGCTTACTGGGTGGGAATAGAAAAGTTCCTGCTATTACAACTCGATCATCAATAAGACGACGTTGTGGCTCGATTCTTACATTGGTATCTTGGTTGTCGTTGAGAATTGTTGAGAGGAGTCTCACATCGGCTAATCATGAGTTTACAAGTAAAGAATACATTTCCACTGACATAAGGTCGGTAAAGGAGACCAAAAGCAAAGCTGGGTGAGTTTGAGCTCTTTTCATCCCGGTTGAGACATTTTGTTTGGTTCGTTGAATGATATGTCATGCTCTATCTTCTAAGAAAAAAAAAATCATAGTTTATAGTTGTGATGTATATCTCTTAATTATTGCAATAAGTTCAGTATAAATGTTGTATTAAATATGTTTGTCAACGGGTGTGGAGCTGGCCAACGCGTACATATATTTGTTAAATTTTCTCTTACATCTCAAAATTCAGAAAATTATACATTAAA

mRNA sequence

ATGCAAGATTACTCTGTTTCGCACCCAATCGGCTGGAATGCATTTGGATTGCCTGCGGAACAATAGGCTATTGAGGTTTGCTCTTCCAGCTTCCAGTTAGCTTACAATGCCTGAATTTGATGATTTTACACCCACGGGAACAGGGGAAGCTCCACTTGCAAAAGCAGATTCTTGGGTAACCGAAGAAGTTGAAGGGACACGGTTCAACACAGGAATCTCAGCTACTATGGAGTTCGTTAACATGGCATATAGGGACACACAGAATTGTTGGCATACGAGTCCTTCCCCGAGATCAATGGTTGAGGAAACATGTACAGAAGAGGAAGCTTTCCAGCTAGCAGAACAGGATGAAAAAGTCTCCATGTGGCCTGCTGGCAAGATCTTGAATGTTATAATGAATCGTCAAGGCTCCAATGTGGCCTGCTCAAACTGTACAATTTGCTGCAACCACCGAAATCTCTCGCAGATGGTATAATAAGCCGATGGACGCATGCAACAGATTATCAATGAAGTCTTGTGCTTTAATCGGAATGATTGAGCTTACTGGGTGGGAATAGAAAAGTTCCTGCTATTACAACTCGATCATCAATAAGACGACGTTGTGGCTCGATTCTTACATTGGTATCTTGGTTGTCGTTGAGAATTGTTGAGAGGAGTCTCACATCGGCTAATCATGAGTTTACAAGTAAAGAATACATTTCCACTGACATAAGGTCGGTAAAGGAGACCAAAAGCAAAGCTGGGTGAGTTTGAGCTCTTTTCATCCCGGTTGAGACATTTTGTTTGGTTCGTTGAATGATATGTCATGCTCTATCTTCTAAGAAAAAAAAAATCATAGTTTATAGTTGTGATGTATATCTCTTAATTATTGCAATAAGTTCAGTATAAATGTTGTATTAAATATGTTTGTCAACGGGTGTGGAGCTGGCCAACGCGTACATATATTTGTTAAATTTTCTCTTACATCTCAAAATTCAGAAAATTATACATTAAA

Coding sequence (CDS)

ATGCCTGAATTTGATGATTTTACACCCACGGGAACAGGGGAAGCTCCACTTGCAAAAGCAGATTCTTGGGTAACCGAAGAAGTTGAAGGGACACGGTTCAACACAGGAATCTCAGCTACTATGGAGTTCGTTAACATGGCATATAGGGACACACAGAATTGTTGGCATACGAGTCCTTCCCCGAGATCAATGGTTGAGGAAACATGTACAGAAGAGGAAGCTTTCCAGCTAGCAGAACAGGATGAAAAAGTCTCCATGTGGCCTGCTGGCAAGATCTTGAATGTTATAATGAATCGTCAAGGCTCCAATGTGGCCTGCTCAAACTGTACAATTTGCTGCAACCACCGAAATCTCTCGCAGATGGTATAA
Homology
[Close]
BLAST of CmoCh07G003170 vs. TAIR10
Match: AT4G04350.1 (AT4G04350.1 tRNA synthetase class I (I, L, M and V) family protein)

HSP 1 Score: 47.8 bits (112), Expect = 5.7e-06
Identity = 29/61 (47.54%), Postives = 35/61 (57.38%), Query Frame = 1 

Query: 6   DFTPTGTGEAPLAKADSWVTEEVEGTRFNTGISATMEFVNMAYRDTQNCWHTSPSPRSMV 65
           D  PT      L K  + VTEE+E TRFNTGIS  MEFVN AY+     W+    PR ++
Sbjct: 806 DDEPTLEQLRTLHKCIAKVTEEIESTRFNTGISGMMEFVNAAYK-----WNN--QPRGII 859

Query: 66  E 67
           E
Sbjct: 866 E 859

The following BLAST results are available for this feature:
BLAST of CmoCh07G003170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G003170 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh07G003170 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G04350.15.7e-0647.54 tRNA synthetase class I (I, L, M and V) family protein[more]
BLAST of CmoCh07G003170 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0034641 cellular nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
biological_process GO:0044699 single-organism process
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0006429 leucyl-tRNA aminoacylation
biological_process GO:0009099 valine biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0004823 leucine-tRNA ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G003170.1CmoCh07G003170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G003170Carg07857Silver-seed gourdcarcmoB0888
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G003170Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G003170Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G003170Wild cucumber (PI 183967)cmocpiB873
CmoCh07G003170Watermelon (Charleston Gray)cmowcgB755
CmoCh07G003170Cucumber (Chinese Long) v2cmocuB865
CmoCh07G003170Melon (DHL92) v3.5.1cmomeB782
CmoCh07G003170Watermelon (97103) v1cmowmB816
CmoCh07G003170Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G003170Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G003170Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G003170Cucumber (Gy14) v2cgybcmoB843
CmoCh07G003170Melon (DHL92) v3.6.1cmomedB886
CmoCh07G003170Silver-seed gourdcarcmoB1250
CmoCh07G003170Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G003170Watermelon (97103) v2cmowmbB849
CmoCh07G003170Wax gourdcmowgoB1051
CmoCh07G003170Cucurbita moschata (Rifu)cmocmoB132
CmoCh07G003170Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G003170Cucurbita maxima (Rimu)cmacmoB162
CmoCh07G003170Cucumber (Gy14) v1cgycmoB0043