CmoCh07G002560 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G002560
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Glucose-fructose oxidoreductase domain-containing protein 2, putative
Location	Cmo_Chr07 : 1263037 .. 1263729 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTGGTGGGAGGCATAGAATGGATGAATGCTTACAGTAGGAAGCAATTCAGGAAACTGTTCTGGAGGATGAGAGCAGCGATGAAGAAAGCCATCAAGAACGGAGGAAAAAGAAGGTTCAATTTTCAATATGATCCTTGCAGCTATGCTCTAAATTTTGATGATGGGTTTTGCAAATTTGAAGCTGTTGCACCTGAAGAACCTGCAAAGATTCAGATTAGCTCAAATTTGAATCACTCTCCCATGTGGGTTTTTGTACTTCTGGTGAAATCTGAGTGAATTTTCTTGATTGGCAGATTGACTCTTTGCCTGCTCATTTTCTTCTGCATCCTTGATTAGAAGCCATCTACTTGCATTTTTTGTACATCTATGCTTGTCTATGATCTTCAATATTATTAATTGGTTCTGTTTCGAGAGAAAAACTGATCCTAGAGCTTTGACTGTCATCCTTAACATATTCACTCCTCCCTTTCTTATTCTTCCATCTTCTCACACGGCAATCTCAGTGTCTAGTATTTACCAATTTACTTTTGCAGACAATCCCAGCTCTCGGGTAAGCAGAAGCTATTTTCTAACAGATGAATTTGAAGAAACTCTGTGACATTCGTCTGCAAAAGGTTGTTAAGCGCAATAACAGGTTAGAAAGGAGAGGAAAACATGCTATTTGCCAATGAAGTTGACGAAACACAA

mRNA sequence

ATGGGATTGGTGGGAGGCATAGAATGGATGAATGCTTACAGTAGGAAGCAATTCAGGAAACTGTTCTGGAGGATGAGAGCAGCGATGAAGAAAGCCATCAAGAACGGAGGAAAAAGAAGGTTCAATTTTCAATATGATCCTTGCAGCTATGCTCTAAATTTTGATGATGGGTTTTGCAAATTTGAAGCTGTTGCACCTGAAGAACCTGCAAAGATTCAGATTAGCTCAAATTTGAATCACTCTCCCATGTGGGTTTTTGTACTTCTGGTGAAATCTGAACAATCCCAGCTCTCGGGTAAGCAGAAGCTATTTTCTAACAGATGAATTTGAAGAAACTCTGTGACATTCGTCTGCAAAAGGTTGTTAAGCGCAATAACAGGTTAGAAAGGAGAGGAAAACATGCTATTTGCCAATGAAGTTGACGAAACACAA

Coding sequence (CDS)

ATGGGATTGGTGGGAGGCATAGAATGGATGAATGCTTACAGTAGGAAGCAATTCAGGAAACTGTTCTGGAGGATGAGAGCAGCGATGAAGAAAGCCATCAAGAACGGAGGAAAAAGAAGGTTCAATTTTCAATATGATCCTTGCAGCTATGCTCTAAATTTTGATGATGGGTTTTGCAAATTTGAAGCTGTTGCACCTGAAGAACCTGCAAAGATTCAGATTAGCTCAAATTTGAATCACTCTCCCATGTGGGTTTTTGTACTTCTGGTGAAATCTGAACAATCCCAGCTCTCGGGTAAGCAGAAGCTATTTTCTAACAGATGA

Homology

[Close]

BLAST of CmoCh07G002560 vs. TrEMBL
Match: M5WKE2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015232mg PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-19
Identity = 55/98 (56.12%), Postives = 67/98 (68.37%), Query Frame = 1


Query: 1  MGLVGGIEWMNAYSRKQFRKLFWRMRAAMKKAIKNGGKRRFNFQYDPCSYALNFDDGFCK 60
          MGLVG + W+NAYSRKQ R LFWRMRAA+KKA+KN GK++  FQYDP SYALNFDDG  K
Sbjct: 1  MGLVGSLVWVNAYSRKQCRSLFWRMRAALKKALKNSGKQQLRFQYDPSSYALNFDDGSWK 60

Query: 61 ----FEAVAPEEPAKIQISSNLN-HSPMWVFVLLVKSE 94
                A+  +   K Q  S+ +  +  WV+VL V SE
Sbjct: 61 SAQEANALKLKHATKPQAHSDSDVKNTAWVYVLWVVSE 98

[Close]

BLAST of CmoCh07G002560 vs. TrEMBL
Match: A0A0S3S2J0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G037700 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-19
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 1


Query: 1  MGLVGGIEWMNAYSRKQFRKLFWRMRAAMKKAIKNGGKRRFNFQYDPCSYALNFDDGFCK 60
          MGL+   EW+NAYS+K+ R LFWR+RAA+KKA+KNGGK+R  FQYDP SYALNFDDGFC 
Sbjct: 1  MGLLERFEWVNAYSKKRCRSLFWRLRAALKKALKNGGKQRLKFQYDPSSYALNFDDGFCA 60

Query: 61 FEAVAPEEPAKIQISSNLNHSPMWVFVLLVKS 93
           +     +   ++++   N++   V+VL VK+
Sbjct: 61 AKKFI-GDARLMELTDINNNTTTLVYVLWVKT 91

[Close]

BLAST of CmoCh07G002560 vs. TrEMBL
Match: V7BT41_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G189400g PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-19
Identity = 50/93 (53.76%), Postives = 70/93 (75.27%), Query Frame = 1


Query: 1  MGLVGGIEWMNAYSRKQFRKLFWRMRAAMKKAIKNGGKRRFNFQYDPCSYALNFDDGFCK 60
          MGL+  +EW+NAYS+K+ R LFWR+RAA+KKA+KNGGK+R  FQYDP SYALNFDDGFC 
Sbjct: 1  MGLLERLEWVNAYSKKRCRSLFWRLRAALKKALKNGGKQRLKFQYDPSSYALNFDDGFCA 60

Query: 61 FEAVAPEEPAKIQISSNLNH-SPMWVFVLLVKS 93
           +    +  A++   +++N+ +   V+VL VK+
Sbjct: 61 AKKFIGD--ARLMELTDINNTTTTLVYVLWVKT 91

[Close]

BLAST of CmoCh07G002560 vs. TrEMBL
Match: A0A0A0LXB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073010 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-18
Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = 1


Query: 7  IEWMNAYSRKQFRKLFWRMRAAMKKAIKNGGKRRFNFQYDPCSYALNFDDGFCKF-EAVA 66
          +E MNAY +KQ R LFW+++AA+KKAIKNG KR+  FQYDP SYALNFDDG  +  E   
Sbjct: 9  LERMNAYGKKQCRSLFWKVKAALKKAIKNGNKRQLKFQYDPSSYALNFDDGHSEIREDNV 68

Query: 67 PEEPAKIQISSNLNHSPMWVFVLLVKSE 94
               ++Q   N+ +S MWV+VL VKSE
Sbjct: 69 DAYKFEVQYCGNVYNSAMWVYVLWVKSE 96

[Close]

BLAST of CmoCh07G002560 vs. TrEMBL
Match: I1MED1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G069900 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-17
Identity = 48/92 (52.17%), Postives = 67/92 (72.83%), Query Frame = 1


Query: 1  MGLVGGIEWMNAYSRKQFRKLFWRMRAAMKKAIKNGGKRRFNFQYDPCSYALNFDDGFCK 60
          MGL+  +EW+NAY +K+ R LFWR+RAA+KKA+KNGGK+R  FQYDP SYALNFDDG C 
Sbjct: 1  MGLLERLEWVNAYGKKRCRSLFWRVRAALKKALKNGGKQRLKFQYDPSSYALNFDDGCCA 60

Query: 61 FEAVAPEEPAKIQISSNLNHSPMWVFVLLVKS 93
           +    +  A++   +++ H+   V+VL VK+
Sbjct: 61 AKKFIGD--ARLMELTDI-HNNTLVYVLWVKT 89

[Close]

BLAST of CmoCh07G002560 vs. TAIR10
Match: AT1G11112.1 (AT1G11112.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 7.7e-07
Identity = 30/57 (52.63%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 1  MGLVGGIEWMNAYSRKQFRKLFWRMRAAMKKAIKNGGKRRFNFQYDPCSYALNFDDG 58
          M L    E +N Y +K FR    RM+AA+KK  K   K++  FQYDP SYALNFDDG
Sbjct: 1  MRLEDRFEAVNQYRKKMFR----RMKAAVKKTKK---KKQTMFQYDPWSYALNFDDG 50

[Close]

BLAST of CmoCh07G002560 vs. NCBI nr
Match: gi|595882124|ref|XP_007212542.1| (hypothetical protein PRUPE_ppa015232mg [Prunus persica])

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-19
Identity = 55/98 (56.12%), Postives = 67/98 (68.37%), Query Frame = 1


Query: 1  MGLVGGIEWMNAYSRKQFRKLFWRMRAAMKKAIKNGGKRRFNFQYDPCSYALNFDDGFCK 60
          MGLVG + W+NAYSRKQ R LFWRMRAA+KKA+KN GK++  FQYDP SYALNFDDG  K
Sbjct: 1  MGLVGSLVWVNAYSRKQCRSLFWRMRAALKKALKNSGKQQLRFQYDPSSYALNFDDGSWK 60

Query: 61 ----FEAVAPEEPAKIQISSNLN-HSPMWVFVLLVKSE 94
                A+  +   K Q  S+ +  +  WV+VL V SE
Sbjct: 61 SAQEANALKLKHATKPQAHSDSDVKNTAWVYVLWVVSE 98

[Close]

BLAST of CmoCh07G002560 vs. NCBI nr
Match: gi|965599861|dbj|BAT87039.1| (hypothetical protein VIGAN_05037700 [Vigna angularis var. angularis])

HSP 1 Score: 102.4 bits (254), Expect = 4.9e-19
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 1


Query: 1  MGLVGGIEWMNAYSRKQFRKLFWRMRAAMKKAIKNGGKRRFNFQYDPCSYALNFDDGFCK 60
          MGL+   EW+NAYS+K+ R LFWR+RAA+KKA+KNGGK+R  FQYDP SYALNFDDGFC 
Sbjct: 1  MGLLERFEWVNAYSKKRCRSLFWRLRAALKKALKNGGKQRLKFQYDPSSYALNFDDGFCA 60

Query: 61 FEAVAPEEPAKIQISSNLNHSPMWVFVLLVKS 93
           +     +   ++++   N++   V+VL VK+
Sbjct: 61 AKKFI-GDARLMELTDINNNTTTLVYVLWVKT 91

[Close]

BLAST of CmoCh07G002560 vs. NCBI nr
Match: gi|593695425|ref|XP_007148211.1| (hypothetical protein PHAVU_006G189400g [Phaseolus vulgaris])

HSP 1 Score: 102.4 bits (254), Expect = 4.9e-19
Identity = 50/93 (53.76%), Postives = 70/93 (75.27%), Query Frame = 1


Query: 1  MGLVGGIEWMNAYSRKQFRKLFWRMRAAMKKAIKNGGKRRFNFQYDPCSYALNFDDGFCK 60
          MGL+  +EW+NAYS+K+ R LFWR+RAA+KKA+KNGGK+R  FQYDP SYALNFDDGFC 
Sbjct: 1  MGLLERLEWVNAYSKKRCRSLFWRLRAALKKALKNGGKQRLKFQYDPSSYALNFDDGFCA 60

Query: 61 FEAVAPEEPAKIQISSNLNH-SPMWVFVLLVKS 93
           +    +  A++   +++N+ +   V+VL VK+
Sbjct: 61 AKKFIGD--ARLMELTDINNTTTTLVYVLWVKT 91

[Close]

BLAST of CmoCh07G002560 vs. NCBI nr
Match: gi|700209545|gb|KGN64641.1| (hypothetical protein Csa_1G073010 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 5.4e-18
Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = 1


Query: 7  IEWMNAYSRKQFRKLFWRMRAAMKKAIKNGGKRRFNFQYDPCSYALNFDDGFCKF-EAVA 66
          +E MNAY +KQ R LFW+++AA+KKAIKNG KR+  FQYDP SYALNFDDG  +  E   
Sbjct: 9  LERMNAYGKKQCRSLFWKVKAALKKAIKNGNKRQLKFQYDPSSYALNFDDGHSEIREDNV 68

Query: 67 PEEPAKIQISSNLNHSPMWVFVLLVKSE 94
               ++Q   N+ +S MWV+VL VKSE
Sbjct: 69 DAYKFEVQYCGNVYNSAMWVYVLWVKSE 96

[Close]

BLAST of CmoCh07G002560 vs. NCBI nr
Match: gi|947061538|gb|KRH10799.1| (hypothetical protein GLYMA_15G069900 [Glycine max])

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-17
Identity = 48/92 (52.17%), Postives = 67/92 (72.83%), Query Frame = 1


Query: 1  MGLVGGIEWMNAYSRKQFRKLFWRMRAAMKKAIKNGGKRRFNFQYDPCSYALNFDDGFCK 60
          MGL+  +EW+NAY +K+ R LFWR+RAA+KKA+KNGGK+R  FQYDP SYALNFDDG C 
Sbjct: 1  MGLLERLEWVNAYGKKRCRSLFWRVRAALKKALKNGGKQRLKFQYDPSSYALNFDDGCCA 60

Query: 61 FEAVAPEEPAKIQISSNLNHSPMWVFVLLVKS 93
           +    +  A++   +++ H+   V+VL VK+
Sbjct: 61 AKKFIGD--ARLMELTDI-HNNTLVYVLWVKT 89

The following BLAST results are available for this feature:

BLAST of CmoCh07G002560 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh07G002560 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WKE2_PRUPE	2.0e-19	56.12	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015232mg PE=4 SV=1	[more]
A0A0S3S2J0_PHAAN	3.4e-19	53.26	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G037700 PE=...	[more]
V7BT41_PHAVU	3.4e-19	53.76	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G189400g PE=4 SV=1	[more]
A0A0A0LXB8_CUCSA	3.8e-18	55.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073010 PE=4 SV=1	[more]
I1MED1_SOYBN	1.1e-17	52.17	Uncharacterized protein OS=Glycine max GN=GLYMA_15G069900 PE=4 SV=1	[more]

BLAST of CmoCh07G002560 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G11112.1	7.7e-07	52.63	unknown protein	[more]

BLAST of CmoCh07G002560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|595882124\|ref\|XP_007212542.1\|	2.9e-19	56.12	hypothetical protein PRUPE_ppa015232mg [Prunus persica]	[more]
gi\|965599861\|dbj\|BAT87039.1\|	4.9e-19	53.26	hypothetical protein VIGAN_05037700 [Vigna angularis var. angularis]	[more]
gi\|593695425\|ref\|XP_007148211.1\|	4.9e-19	53.76	hypothetical protein PHAVU_006G189400g [Phaseolus vulgaris]	[more]
gi\|700209545\|gb\|KGN64641.1\|	5.4e-18	55.68	hypothetical protein Csa_1G073010 [Cucumis sativus]	[more]
gi\|947061538\|gb\|KRH10799.1\|	1.6e-17	52.17	hypothetical protein GLYMA_15G069900 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G002560.1	CmoCh07G002560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34538	FAMILY NOT NAMED	coord: 1..92 score: 6.6
None	No IPR available	PANTHER	PTHR34538:SF3	SUBFAMILY NOT NAMED	coord: 1..92 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G002560	CmaCh13G006640	Cucurbita maxima (Rimu)	cmacmoB240
CmoCh07G002560	CmaCh07G002660	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G002560	Cla001371	Watermelon (97103) v1	cmowmB816
CmoCh07G002560	MELO3C007306	Melon (DHL92) v3.5.1	cmomeB782
CmoCh07G002560	ClCG03G005660	Watermelon (Charleston Gray)	cmowcgB761
CmoCh07G002560	ClCG01G022750	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G002560	CSPI01G11770	Wild cucumber (PI 183967)	cmocpiB845
CmoCh07G002560	CSPI06G34390	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G002560	Lsi02G007150	Bottle gourd (USVL1VR-Ls)	cmolsiB786
CmoCh07G002560	Lsi01G003390	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G002560	Cp4.1LG19g07420	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G002560	Cp4.1LG09g08680	Cucurbita pepo (Zucchini)	cmocpeB799
CmoCh07G002560	Cp4.1LG20g04180	Cucurbita pepo (Zucchini)	cmocpeB818
CmoCh07G002560	MELO3C002569.2	Melon (DHL92) v3.6.1	cmomedB875
CmoCh07G002560	MELO3C007306.2	Melon (DHL92) v3.6.1	cmomedB886
CmoCh07G002560	CsaV3_1G011920	Cucumber (Chinese Long) v3	cmocucB0989
CmoCh07G002560	Cla97C03G056970	Watermelon (97103) v2	cmowmbB858
CmoCh07G002560	Cla97C01G022630	Watermelon (97103) v2	cmowmbB849
CmoCh07G002560	Bhi08G001569	Wax gourd	cmowgoB1075
CmoCh07G002560	Bhi03G000348	Wax gourd	cmowgoB1051
CmoCh07G002560	CsGy1G011730	Cucumber (Gy14) v2	cgybcmoB133

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G002560	CmoCh13G006840	Cucurbita moschata (Rifu)	cmocmoB190

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G002560	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G002560	Cucurbita pepo (Zucchini)	cmocpeB825
CmoCh07G002560	Cucurbita pepo (Zucchini)	cmocpeB826
CmoCh07G002560	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G002560	Silver-seed gourd	carcmoB0046
CmoCh07G002560	Silver-seed gourd	carcmoB0209
CmoCh07G002560	Silver-seed gourd	carcmoB0888
CmoCh07G002560	Silver-seed gourd	carcmoB1250
CmoCh07G002560	Silver-seed gourd	carcmoB1270
CmoCh07G002560	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G002560	Cucurbita moschata (Rifu)	cmocmoB036
CmoCh07G002560	Cucurbita moschata (Rifu)	cmocmoB132
CmoCh07G002560	Cucurbita moschata (Rifu)	cmocmoB349
CmoCh07G002560	Cucurbita moschata (Rifu)	cmocmoB400
CmoCh07G002560	Cucurbita moschata (Rifu)	cmocmoB444
CmoCh07G002560	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh07G002560	Cucumber (Gy14) v1	cgycmoB0043
CmoCh07G002560	Cucurbita maxima (Rimu)	cmacmoB430
CmoCh07G002560	Cucurbita maxima (Rimu)	cmacmoB535
CmoCh07G002560	Cucurbita maxima (Rimu)	cmacmoB629
CmoCh07G002560	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G002560	Cucumber (Chinese Long) v2	cmocuB865