CmoCh07G002380 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G002380
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDNA-directed RNA polymerase II subunit 2
LocationCmo_Chr07 : 1180884 .. 1181918 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGATCCTGTCACTGGAGCTCCTCGGTATTTTTAAATAGCAAGGCGATCTGGTTGTTAACTTGATCGGTGCTCAGGTTGTCAAGGCCCTTTTTTATTCAATGATTGATCCCTAAAGCAGGTACCAACCAGGTGTTTTCTACTCATTTGAAAATTGTAGCATCAGATAAGATCTCTTTGGTTGTTTGGAAAAGTGTGCTTATGCTAATTATGTTCTAACTTCCTTTTGAAAACAGATATGTATTGGTATTGCATTTATTCTGGCATATGGAAATTATTTGTAACAAGCAATTAGATTGTTGTCTTTTTATTCTGTATCATAATTCTGAGAAGGATCTTGCCGAGCTTAGGGAGTGTCCATATGACCAGGGAGGATATTTTATCATCAATGAGAGTGAGAAGGTTCTTATTGCACAAGAGAAAATGTGCATAAAATATGTTTCCAAAAAAGGACAGCCAAACAAGTACGCCTTTGTGGAAGACGTCTGGTCTATGGCTGAGTCACAAAATAGACCACCTAATACCATGTTTGCACACAAATGCTTTCTTGAACTAGTGCCAAGGGGGTAATGTACTTATCTTCGTTTTCTGAAGATTTAGAAGTTCTTCCTCGTTGAACTAAAAGCTATTCTAACCTATTCTTTTTGCAATTCGTCAATGTTCTTTCAGGTCTTCAGGACAATACATACATGCCACTCTGCCTGCAACCCAAACTGAGATTATGATTATTGTTGTGTTTCGTGCTCGAGGATTTGTTCCTGATAAAGATCTTCTAGAGCATGTATGTTATGAATTCTTTGATACTCAAATGATGGAGTTGCTTCAGTCTTCTCTGGAAGAGGCTTTTGTTATACCAAATCAGCAGGTCACCCATTTCTTTGATACTTGTCTATCATCCTGTTCTTTCTCGCTCTCTCATGCTCACACCAACAATGTTTCTTGACTGTAGGTTGCACTAGGCCATATTGGGAAGAGAGGATCAACAGTTGGTGTGACCAAGGAAAAGAGGATTAAGTATGCATTATCTCAATAA

mRNA sequence

ATGACTGATCCTGTCACTGGAGCTCCTCGATATGTATTGGTATTGCATTTATTCTGGCATATGGAAATTATTTGTAACAAGCAATTAGATTGTTGTCTTTTTATTCTGTATCATAATTCTGAGAAGGATCTTGCCGAGCTTAGGGAGTGTCCATATGACCAGGGAGGATATTTTATCATCAATGAGAGTGAGAAGGTTCTTATTGCACAAGAGAAAATGTGCATAAAATATGTTTCCAAAAAAGGACAGCCAAACAAGTACGCCTTTGTGGAAGACGTCTGGTCTATGGCTGAGTCACAAAATAGACCACCTAATACCATGTTTGCACACAAATGCTTTCTTGAACTAGTGCCAAGGGGGTCTTCAGGACAATACATACATGCCACTCTGCCTGCAACCCAAACTGAGATTATGATTATTGTTGTGTTTCGTGCTCGAGGATTTGTTCCTGATAAAGATCTTCTAGAGCATGTATGTTATGAATTCTTTGATACTCAAATGATGGAGTTGCTTCAGTCTTCTCTGGAAGAGGCTTTTGTTATACCAAATCAGCAGGTTGCACTAGGCCATATTGGGAAGAGAGGATCAACAGTTGGTGTGACCAAGGAAAAGAGGATTAAGTATGCATTATCTCAATAA

Coding sequence (CDS)

ATGACTGATCCTGTCACTGGAGCTCCTCGATATGTATTGGTATTGCATTTATTCTGGCATATGGAAATTATTTGTAACAAGCAATTAGATTGTTGTCTTTTTATTCTGTATCATAATTCTGAGAAGGATCTTGCCGAGCTTAGGGAGTGTCCATATGACCAGGGAGGATATTTTATCATCAATGAGAGTGAGAAGGTTCTTATTGCACAAGAGAAAATGTGCATAAAATATGTTTCCAAAAAAGGACAGCCAAACAAGTACGCCTTTGTGGAAGACGTCTGGTCTATGGCTGAGTCACAAAATAGACCACCTAATACCATGTTTGCACACAAATGCTTTCTTGAACTAGTGCCAAGGGGGTCTTCAGGACAATACATACATGCCACTCTGCCTGCAACCCAAACTGAGATTATGATTATTGTTGTGTTTCGTGCTCGAGGATTTGTTCCTGATAAAGATCTTCTAGAGCATGTATGTTATGAATTCTTTGATACTCAAATGATGGAGTTGCTTCAGTCTTCTCTGGAAGAGGCTTTTGTTATACCAAATCAGCAGGTTGCACTAGGCCATATTGGGAAGAGAGGATCAACAGTTGGTGTGACCAAGGAAAAGAGGATTAAGTATGCATTATCTCAATAA
Homology
[Close]
BLAST of CmoCh07G002380 vs. Swiss-Prot
Match: RPB2_SOLLC (DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 8.9e-65
Identity = 128/176 (72.73%), Postives = 141/176 (80.11%), Query Frame = 1 

Query: 36  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDV 95
           LY NSEKDL EL ECP DQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V
Sbjct: 168 LYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEV 227

Query: 96  WSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDKD 155
            SMA++QNRPP+TMF           GSSGQYI ATLP  +TEI II+VFRA GFV DKD
Sbjct: 228 RSMADTQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 287

Query: 156 LLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           +LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRG+TVGVT+EKRIKYA
Sbjct: 288 ILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYA 343

[Close]
BLAST of CmoCh07G002380 vs. Swiss-Prot
Match: NRPB2_ARATH (DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana GN=NRPB2 PE=1 SV=2)

HSP 1 Score: 246.5 bits (628), Expect = 2.6e-64
Identity = 127/176 (72.16%), Postives = 140/176 (79.55%), Query Frame = 1 

Query: 36  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDV 95
           L+ NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYA+V +V
Sbjct: 169 LFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEV 228

Query: 96  WSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDKD 155
            SMAE+QNRPP+TMF           GSSGQYI  TLP  +TEI II+VFRA GFV DKD
Sbjct: 229 RSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKD 288

Query: 156 LLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           +LEH+CY+F DTQMMELL+ SLEEAFVI NQ VAL +IGKRG+TVGVTKEKRIKYA
Sbjct: 289 ILEHICYDFADTQMMELLRPSLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYA 344

[Close]
BLAST of CmoCh07G002380 vs. Swiss-Prot
Match: RPB2_DICDI (DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum GN=polr2b PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.3e-43
Identity = 92/177 (51.98%), Postives = 128/177 (72.32%), Query Frame = 1 

Query: 35  ILYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVED 94
           +L    ++DL  + EC +DQGGYFIIN SEKVLIAQEKM     YV KK  P+KY++V +
Sbjct: 166 MLNEADDRDLTTMGECSFDQGGYFIINGSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAE 225

Query: 95  VWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDK 154
           + S  E+ +RP +TM+     L    +G  G  I AT+P  + ++ +I+VFRA GFV DK
Sbjct: 226 IRSCQETGSRPTSTMYLK--MLHNTNKGPVG--IKATVPYIKQDVPVIIVFRALGFVADK 285

Query: 155 DLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           D+LEH+CY+F D QMM+L++ SLEE+FVI +Q+VAL ++GKRGST+G T+E+RIK+A
Sbjct: 286 DILEHICYDFKDAQMMDLMRPSLEESFVIQSQEVALDYLGKRGSTMG-TREQRIKFA 337

[Close]
BLAST of CmoCh07G002380 vs. Swiss-Prot
Match: RPB2_SCHPO (DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 5.3e-41
Identity = 90/179 (50.28%), Postives = 127/179 (70.95%), Query Frame = 1 

Query: 35  ILYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMC--IKYVSKKGQPNKYAFVED 94
           IL   S+ +L +L ECPYDQGGYFIIN SEKV+IAQE+    I  V KK  P+  A+V +
Sbjct: 165 ILNGVSDSELYDLNECPYDQGGYFIINGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAE 224

Query: 95  VWSMAESQNRPPNTMFAHKCFLELVPRG--SSGQYIHATLPATQTEIMIIVVFRARGFVP 154
           + S  E  +R  ++M      ++L+ R   +SGQ I ATLP  +++I I++VFRA G VP
Sbjct: 225 IRSALERGSRLISSM-----QIKLMARNTENSGQTIRATLPYIRSDIPIVIVFRALGVVP 284

Query: 155 DKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           D+D+LEH+CY+  D QM+E+++  +EEAFVI ++ +AL +IGKRGST GVT+EKR++YA
Sbjct: 285 DRDILEHICYDPNDFQMLEMMKPCIEEAFVIQDKDIALDYIGKRGSTTGVTREKRLRYA 338

[Close]
BLAST of CmoCh07G002380 vs. Swiss-Prot
Match: RPB2_HUMAN (DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.5e-40
Identity = 93/179 (51.96%), Postives = 121/179 (67.60%), Query Frame = 1 

Query: 40  SEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMA 99
           +++DL EL ECP D GGYFIIN SEKVLIAQEKM     YV  K + +KYA+  +  S  
Sbjct: 167 TDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAK-KDSKYAYTGECRSCL 226

Query: 100 ESQNRPPNTMFAHKCFLELVPRGSSG-------QYIHATLPATQTEIMIIVVFRARGFVP 159
           E+ +RP +T++     + ++ RG  G       Q I ATLP  + E+ II+VFRA GFV 
Sbjct: 227 ENSSRPTSTIW-----VSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVS 286

Query: 160 DKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           D+D+LEH+ Y+F D +MME+++ SL+EAFVI  Q VAL  IG RG+  GVTKEKRIKYA
Sbjct: 287 DRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYA 339

[Close]
BLAST of CmoCh07G002380 vs. TrEMBL
Match: G7I5Y3_MEDTR (DNA-directed RNA polymerase subunit beta OS=Medicago truncatula GN=MTR_1g023500 PE=3 SV=2)

HSP 1 Score: 254.6 bits (649), Expect = 1.1e-64
Identity = 132/176 (75.00%), Postives = 142/176 (80.68%), Query Frame = 1 

Query: 36  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDV 95
           LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYA+V +V
Sbjct: 172 LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEV 231

Query: 96  WSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDKD 155
            SMAESQNRPP+TMF           GSSGQYI ATLP  +TEI II+VFRA GFV DKD
Sbjct: 232 RSMAESQNRPPSTMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 291

Query: 156 LLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           +LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRGSTVGVTKEKRIKYA
Sbjct: 292 ILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYA 347

[Close]
BLAST of CmoCh07G002380 vs. TrEMBL
Match: A0A0S3S2L8_PHAAN (DNA-directed RNA polymerase subunit beta OS=Vigna angularis var. angularis GN=Vigan.05G041800 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.4e-64
Identity = 132/176 (75.00%), Postives = 142/176 (80.68%), Query Frame = 1 

Query: 36  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDV 95
           LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V
Sbjct: 171 LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEV 230

Query: 96  WSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDKD 155
            SMAESQNRPP+TMF           GSSGQYI ATLP  +TEI II+VFRA GFV DKD
Sbjct: 231 RSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290

Query: 156 LLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           +LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRG+TVGVTKEKRIKYA
Sbjct: 291 ILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYA 346

[Close]
BLAST of CmoCh07G002380 vs. TrEMBL
Match: A0A0L9VFK0_PHAAN (DNA-directed RNA polymerase subunit beta OS=Phaseolus angularis GN=LR48_Vigan09g244200 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.4e-64
Identity = 132/176 (75.00%), Postives = 142/176 (80.68%), Query Frame = 1 

Query: 36  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDV 95
           LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V
Sbjct: 171 LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEV 230

Query: 96  WSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDKD 155
            SMAESQNRPP+TMF           GSSGQYI ATLP  +TEI II+VFRA GFV DKD
Sbjct: 231 RSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290

Query: 156 LLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           +LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRG+TVGVTKEKRIKYA
Sbjct: 291 ILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYA 346

[Close]
BLAST of CmoCh07G002380 vs. TrEMBL
Match: A0A0A0KNB9_CUCSA (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=Csa_6G517340 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.4e-64
Identity = 132/176 (75.00%), Postives = 141/176 (80.11%), Query Frame = 1 

Query: 36  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDV 95
           LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V
Sbjct: 225 LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEV 284

Query: 96  WSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDKD 155
            SMAESQNRPP+TMF           GSSGQYI ATLP  + EI II+VFRA GFV DKD
Sbjct: 285 RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRNEIPIIIVFRALGFVADKD 344

Query: 156 LLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           +LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRGSTVGVTKEKRIKYA
Sbjct: 345 ILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYA 400

[Close]
BLAST of CmoCh07G002380 vs. TrEMBL
Match: B9RZ91_RICCO (DNA-directed RNA polymerase subunit beta OS=Ricinus communis GN=RCOM_0936370 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-64
Identity = 131/176 (74.43%), Postives = 142/176 (80.68%), Query Frame = 1 

Query: 36  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDV 95
           LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYA+V +V
Sbjct: 171 LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEV 230

Query: 96  WSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDKD 155
            SMAESQNRPP+TMF           GSSGQYI ATLP  +TEI II+VFRA GFV DKD
Sbjct: 231 RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290

Query: 156 LLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           +LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRG+TVGVTKEKRIKYA
Sbjct: 291 ILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYA 346

[Close]
BLAST of CmoCh07G002380 vs. TAIR10
Match: AT4G21710.1 (AT4G21710.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 246.5 bits (628), Expect = 1.5e-65
Identity = 127/176 (72.16%), Postives = 140/176 (79.55%), Query Frame = 1 

Query: 36  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDV 95
           L+ NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYA+V +V
Sbjct: 169 LFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEV 228

Query: 96  WSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDKD 155
            SMAE+QNRPP+TMF           GSSGQYI  TLP  +TEI II+VFRA GFV DKD
Sbjct: 229 RSMAENQNRPPSTMFVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKD 288

Query: 156 LLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           +LEH+CY+F DTQMMELL+ SLEEAFVI NQ VAL +IGKRG+TVGVTKEKRIKYA
Sbjct: 289 ILEHICYDFADTQMMELLRPSLEEAFVIQNQLVALDYIGKRGATVGVTKEKRIKYA 344

[Close]
BLAST of CmoCh07G002380 vs. TAIR10
Match: AT5G45140.1 (AT5G45140.1 nuclear RNA polymerase C2)

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-08
Identity = 47/168 (27.98%), Postives = 80/168 (47.62%), Query Frame = 1 

Query: 29  LDCCLFILYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIKYV----SKKGQP 88
           L  C  +L+   E++LA L ECP D GGYFII  +EKVL+ QE++    +     KKG  
Sbjct: 149 LRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIIDSDKKGNI 208

Query: 89  NKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFR 148
           N  A V     M +S           K  +++       + I+  L     +I II+V +
Sbjct: 209 N--ASVTSSTEMTKS-----------KTVIQM-----EKEKIYLFLHRFVKKIPIIIVLK 268

Query: 149 ARGFVPDKDLLEHVCYE-FFDTQMMELLQSSLEEAFVIPNQQVALGHI 192
           A G   D+++++ V  +  F   ++  ++  + E   +  Q+ AL ++
Sbjct: 269 AMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEG--VNTQKQALDYL 296

[Close]
BLAST of CmoCh07G002380 vs. TAIR10
Match: AT3G18090.1 (AT3G18090.1 nuclear RNA polymerase D2B)

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-08
Identity = 40/146 (27.40%), Postives = 66/146 (45.21%), Query Frame = 1 

Query: 35  ILYHNSEKDLAELRE--CPYDQGGYFIINESEKVLIAQEKMCIKYVSKKGQPNKYAFVED 94
           +L   SEK     ++  C +DQGGYF+I  +EKV IAQE+MC K +     P        
Sbjct: 65  VLCKTSEKGKENCKKGNCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNSP-------- 124

Query: 95  VWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDK 154
            W+++       N         E        + +  T+    TEI + ++F A G   DK
Sbjct: 125 -WTVSFRSETKRNRFIVRLSENEKAEDYKIMEKV-LTVYFLSTEIPVWLLFFALGVSSDK 184

Query: 155 DLLEHVCYEFFDTQMMELLQSSLEEA 179
           + ++ + ++  D  +   L +S+ EA
Sbjct: 185 EAMDLIAFDGDDASITNSLIASIHEA 200

[Close]
BLAST of CmoCh07G002380 vs. TAIR10
Match: AT3G23780.1 (AT3G23780.1 nuclear RNA polymerase D2A)

HSP 1 Score: 55.5 bits (132), Expect = 4.8e-08
Identity = 40/146 (27.40%), Postives = 65/146 (44.52%), Query Frame = 1 

Query: 35  ILYHNSEKDLAELR--ECPYDQGGYFIINESEKVLIAQEKMCIKYVSKKGQPNKYAFVED 94
           IL   SEK     +  +C +DQGGYF+I  +EKV IAQE+MC K +     P        
Sbjct: 183 ILCKTSEKGKENCKKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNSP-------- 242

Query: 95  VWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDK 154
            W+++       N         E        + +  T+    TEI + ++F A G   DK
Sbjct: 243 -WTVSFRSENKRNRFIVRLSENEKAEDYKRREKV-LTVYFLSTEIPVWLLFFALGVSSDK 302

Query: 155 DLLEHVCYEFFDTQMMELLQSSLEEA 179
           + ++ + ++  D  +   L +S+  A
Sbjct: 303 EAMDLIAFDGDDASITNSLIASIHVA 318

[Close]
BLAST of CmoCh07G002380 vs. NCBI nr
Match: gi|922395497|ref|XP_003589372.2| (DNA-directed RNA polymerase subunit beta [Medicago truncatula])

HSP 1 Score: 254.6 bits (649), Expect = 1.5e-64
Identity = 132/176 (75.00%), Postives = 142/176 (80.68%), Query Frame = 1 

Query: 36  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDV 95
           LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYA+V +V
Sbjct: 172 LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEV 231

Query: 96  WSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDKD 155
            SMAESQNRPP+TMF           GSSGQYI ATLP  +TEI II+VFRA GFV DKD
Sbjct: 232 RSMAESQNRPPSTMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 291

Query: 156 LLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           +LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRGSTVGVTKEKRIKYA
Sbjct: 292 ILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYA 347

[Close]
BLAST of CmoCh07G002380 vs. NCBI nr
Match: gi|965599899|dbj|BAT87077.1| (hypothetical protein VIGAN_05041800 [Vigna angularis var. angularis])

HSP 1 Score: 254.2 bits (648), Expect = 2.0e-64
Identity = 132/176 (75.00%), Postives = 142/176 (80.68%), Query Frame = 1 

Query: 36  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDV 95
           LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V
Sbjct: 171 LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEV 230

Query: 96  WSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDKD 155
            SMAESQNRPP+TMF           GSSGQYI ATLP  +TEI II+VFRA GFV DKD
Sbjct: 231 RSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290

Query: 156 LLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           +LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRG+TVGVTKEKRIKYA
Sbjct: 291 ILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYA 346

[Close]
BLAST of CmoCh07G002380 vs. NCBI nr
Match: gi|449433841|ref|XP_004134705.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 2.0e-64
Identity = 132/176 (75.00%), Postives = 141/176 (80.11%), Query Frame = 1 

Query: 36  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDV 95
           LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V
Sbjct: 176 LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEV 235

Query: 96  WSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDKD 155
            SMAESQNRPP+TMF           GSSGQYI ATLP  + EI II+VFRA GFV DKD
Sbjct: 236 RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRNEIPIIIVFRALGFVADKD 295

Query: 156 LLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           +LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRGSTVGVTKEKRIKYA
Sbjct: 296 ILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYA 351

[Close]
BLAST of CmoCh07G002380 vs. NCBI nr
Match: gi|920712534|gb|KOM53783.1| (hypothetical protein LR48_Vigan09g244200 [Vigna angularis])

HSP 1 Score: 254.2 bits (648), Expect = 2.0e-64
Identity = 132/176 (75.00%), Postives = 142/176 (80.68%), Query Frame = 1 

Query: 36  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDV 95
           LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V
Sbjct: 171 LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEV 230

Query: 96  WSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDKD 155
            SMAESQNRPP+TMF           GSSGQYI ATLP  +TEI II+VFRA GFV DKD
Sbjct: 231 RSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKD 290

Query: 156 LLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           +LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRG+TVGVTKEKRIKYA
Sbjct: 291 ILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYA 346

[Close]
BLAST of CmoCh07G002380 vs. NCBI nr
Match: gi|700194022|gb|KGN49226.1| (hypothetical protein Csa_6G517340 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 2.0e-64
Identity = 132/176 (75.00%), Postives = 141/176 (80.11%), Query Frame = 1 

Query: 36  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDV 95
           LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V
Sbjct: 225 LYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEV 284

Query: 96  WSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDKD 155
            SMAESQNRPP+TMF           GSSGQYI ATLP  + EI II+VFRA GFV DKD
Sbjct: 285 RSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRNEIPIIIVFRALGFVADKD 344

Query: 156 LLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA 210
           +LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRGSTVGVTKEKRIKYA
Sbjct: 345 ILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYA 400

The following BLAST results are available for this feature:
BLAST of CmoCh07G002380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPB2_SOLLC8.9e-6572.73DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2... [more]
NRPB2_ARATH2.6e-6472.16DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana GN=NRPB2 PE=1 S... [more]
RPB2_DICDI7.3e-4351.98DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum GN=polr2... [more]
RPB2_SCHPO5.3e-4150.28DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces pombe (strain... [more]
RPB2_HUMAN1.5e-4051.96DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1[more]
BLAST of CmoCh07G002380 vs. TrEMBL
Match NameE-valueIdentityDescription
G7I5Y3_MEDTR1.1e-6475.00DNA-directed RNA polymerase subunit beta OS=Medicago truncatula GN=MTR_1g023500 ... [more]
A0A0S3S2L8_PHAAN1.4e-6475.00DNA-directed RNA polymerase subunit beta OS=Vigna angularis var. angularis GN=Vi... [more]
A0A0L9VFK0_PHAAN1.4e-6475.00DNA-directed RNA polymerase subunit beta OS=Phaseolus angularis GN=LR48_Vigan09g... [more]
A0A0A0KNB9_CUCSA1.4e-6475.00DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=Csa_6G517340 PE=3... [more]
B9RZ91_RICCO1.8e-6474.43DNA-directed RNA polymerase subunit beta OS=Ricinus communis GN=RCOM_0936370 PE=... [more]
BLAST of CmoCh07G002380 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G21710.11.5e-6572.16 DNA-directed RNA polymerase family protein[more]
AT5G45140.12.1e-0827.98 nuclear RNA polymerase C2[more]
AT3G18090.12.8e-0827.40 nuclear RNA polymerase D2B[more]
AT3G23780.14.8e-0827.40 nuclear RNA polymerase D2A[more]
BLAST of CmoCh07G002380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|922395497|ref|XP_003589372.2|1.5e-6475.00DNA-directed RNA polymerase subunit beta [Medicago truncatula][more]
gi|965599899|dbj|BAT87077.1|2.0e-6475.00hypothetical protein VIGAN_05041800 [Vigna angularis var. angularis][more]
gi|449433841|ref|XP_004134705.1|2.0e-6475.00PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1 [Cucumis sativ... [more]
gi|920712534|gb|KOM53783.1|2.0e-6475.00hypothetical protein LR48_Vigan09g244200 [Vigna angularis][more]
gi|700194022|gb|KGN49226.1|2.0e-6475.00hypothetical protein Csa_6G517340 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007642RNA_pol_Rpb2_2
IPR007644RNA_pol_bsu_protrusion
IPR015712DNA-dir_RNA_pol_su2
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
GO:0032549ribonucleoside binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006366 transcription from RNA polymerase II promoter
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005829 cytosol
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G002380.1CmoCh07G002380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007642RNA polymerase Rpb2, domain 2GENE3DG3DSA:3.90.1110.10coord: 77..210
score: 2.4
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 121..209
score: 8.1
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 35..184
score: 5.4
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 35..209
score: 2.4
NoneNo IPR availablePANTHERPTHR20856:SF7DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2coord: 35..209
score: 2.4
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 33..209
score: 2.87

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G002380Cucsa.046200Cucumber (Gy14) v1cgycmoB0043
CmoCh07G002380CmaCh03G012620Cucurbita maxima (Rimu)cmacmoB672
CmoCh07G002380CmaCh07G002430Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G002380Cla009618Watermelon (97103) v1cmowmB816
CmoCh07G002380Csa6G517340Cucumber (Chinese Long) v2cmocuB865
CmoCh07G002380MELO3C007284Melon (DHL92) v3.5.1cmomeB782
CmoCh07G002380ClCG01G022970Watermelon (Charleston Gray)cmowcgB755
CmoCh07G002380CSPI06G34600Wild cucumber (PI 183967)cmocpiB873
CmoCh07G002380Lsi01G003180Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G002380Cp4.1LG10g05000Cucurbita pepo (Zucchini)cmocpeB801
CmoCh07G002380Cp4.1LG19g07220Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G002380MELO3C007284.2Melon (DHL92) v3.6.1cmomedB886
CmoCh07G002380CsaV3_6G050130Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G002380Cla97C01G022860Watermelon (97103) v2cmowmbB849
CmoCh07G002380Bhi03G000321Wax gourdcmowgoB1051
CmoCh07G002380CsGy6G034140Cucumber (Gy14) v2cgybcmoB843
CmoCh07G002380Carg15292Silver-seed gourdcarcmoB0745
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh07G002380CmoCh03G012580Cucurbita moschata (Rifu)cmocmoB459
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G002380Wax gourdcmowgoB1080
CmoCh07G002380Cucurbita moschata (Rifu)cmocmoB036
CmoCh07G002380Cucurbita moschata (Rifu)cmocmoB190
CmoCh07G002380Cucurbita moschata (Rifu)cmocmoB349
CmoCh07G002380Cucurbita moschata (Rifu)cmocmoB400
CmoCh07G002380Cucurbita moschata (Rifu)cmocmoB444
CmoCh07G002380Cucurbita maxima (Rimu)cmacmoB240
CmoCh07G002380Cucurbita maxima (Rimu)cmacmoB430
CmoCh07G002380Cucurbita maxima (Rimu)cmacmoB535
CmoCh07G002380Cucurbita maxima (Rimu)cmacmoB629
CmoCh07G002380Wild cucumber (PI 183967)cmocpiB846
CmoCh07G002380Cucumber (Chinese Long) v2cmocuB836
CmoCh07G002380Melon (DHL92) v3.5.1cmomeB771
CmoCh07G002380Cucurbita pepo (Zucchini)cmocpeB799
CmoCh07G002380Cucurbita pepo (Zucchini)cmocpeB818
CmoCh07G002380Cucurbita pepo (Zucchini)cmocpeB825
CmoCh07G002380Cucurbita pepo (Zucchini)cmocpeB826
CmoCh07G002380Bottle gourd (USVL1VR-Ls)cmolsiB783
CmoCh07G002380Cucumber (Gy14) v2cgybcmoB133
CmoCh07G002380Melon (DHL92) v3.6.1cmomedB875
CmoCh07G002380Silver-seed gourdcarcmoB0046
CmoCh07G002380Silver-seed gourdcarcmoB0209
CmoCh07G002380Silver-seed gourdcarcmoB0239
CmoCh07G002380Silver-seed gourdcarcmoB0888
CmoCh07G002380Silver-seed gourdcarcmoB1270
CmoCh07G002380Cucumber (Chinese Long) v3cmocucB0989