CmoCh07G002380 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTGATCCTGTCACTGGAGCTCCTCGGTATTTTTAAATAGCAAGGCGATCTGGTTGTTAACTTGATCGGTGCTCAGGTTGTCAAGGCCCTTTTTTATTCAATGATTGATCCCTAAAGCAGGTACCAACCAGGTGTTTTCTACTCATTTGAAAATTGTAGCATCAGATAAGATCTCTTTGGTTGTTTGGAAAAGTGTGCTTATGCTAATTATGTTCTAACTTCCTTTTGAAAACAGATATGTATTGGTATTGCATTTATTCTGGCATATGGAAATTATTTGTAACAAGCAATTAGATTGTTGTCTTTTTATTCTGTATCATAATTCTGAGAAGGATCTTGCCGAGCTTAGGGAGTGTCCATATGACCAGGGAGGATATTTTATCATCAATGAGAGTGAGAAGGTTCTTATTGCACAAGAGAAAATGTGCATAAAATATGTTTCCAAAAAAGGACAGCCAAACAAGTACGCCTTTGTGGAAGACGTCTGGTCTATGGCTGAGTCACAAAATAGACCACCTAATACCATGTTTGCACACAAATGCTTTCTTGAACTAGTGCCAAGGGGGTAATGTACTTATCTTCGTTTTCTGAAGATTTAGAAGTTCTTCCTCGTTGAACTAAAAGCTATTCTAACCTATTCTTTTTGCAATTCGTCAATGTTCTTTCAGGTCTTCAGGACAATACATACATGCCACTCTGCCTGCAACCCAAACTGAGATTATGATTATTGTTGTGTTTCGTGCTCGAGGATTTGTTCCTGATAAAGATCTTCTAGAGCATGTATGTTATGAATTCTTTGATACTCAAATGATGGAGTTGCTTCAGTCTTCTCTGGAAGAGGCTTTTGTTATACCAAATCAGCAGGTCACCCATTTCTTTGATACTTGTCTATCATCCTGTTCTTTCTCGCTCTCTCATGCTCACACCAACAATGTTTCTTGACTGTAGGTTGCACTAGGCCATATTGGGAAGAGAGGATCAACAGTTGGTGTGACCAAGGAAAAGAGGATTAAGTATGCATTATCTCAATAA ATGACTGATCCTGTCACTGGAGCTCCTCGATATGTATTGGTATTGCATTTATTCTGGCATATGGAAATTATTTGTAACAAGCAATTAGATTGTTGTCTTTTTATTCTGTATCATAATTCTGAGAAGGATCTTGCCGAGCTTAGGGAGTGTCCATATGACCAGGGAGGATATTTTATCATCAATGAGAGTGAGAAGGTTCTTATTGCACAAGAGAAAATGTGCATAAAATATGTTTCCAAAAAAGGACAGCCAAACAAGTACGCCTTTGTGGAAGACGTCTGGTCTATGGCTGAGTCACAAAATAGACCACCTAATACCATGTTTGCACACAAATGCTTTCTTGAACTAGTGCCAAGGGGGTCTTCAGGACAATACATACATGCCACTCTGCCTGCAACCCAAACTGAGATTATGATTATTGTTGTGTTTCGTGCTCGAGGATTTGTTCCTGATAAAGATCTTCTAGAGCATGTATGTTATGAATTCTTTGATACTCAAATGATGGAGTTGCTTCAGTCTTCTCTGGAAGAGGCTTTTGTTATACCAAATCAGCAGGTTGCACTAGGCCATATTGGGAAGAGAGGATCAACAGTTGGTGTGACCAAGGAAAAGAGGATTAAGTATGCATTATCTCAATAA ATGACTGATCCTGTCACTGGAGCTCCTCGATATGTATTGGTATTGCATTTATTCTGGCATATGGAAATTATTTGTAACAAGCAATTAGATTGTTGTCTTTTTATTCTGTATCATAATTCTGAGAAGGATCTTGCCGAGCTTAGGGAGTGTCCATATGACCAGGGAGGATATTTTATCATCAATGAGAGTGAGAAGGTTCTTATTGCACAAGAGAAAATGTGCATAAAATATGTTTCCAAAAAAGGACAGCCAAACAAGTACGCCTTTGTGGAAGACGTCTGGTCTATGGCTGAGTCACAAAATAGACCACCTAATACCATGTTTGCACACAAATGCTTTCTTGAACTAGTGCCAAGGGGGTCTTCAGGACAATACATACATGCCACTCTGCCTGCAACCCAAACTGAGATTATGATTATTGTTGTGTTTCGTGCTCGAGGATTTGTTCCTGATAAAGATCTTCTAGAGCATGTATGTTATGAATTCTTTGATACTCAAATGATGGAGTTGCTTCAGTCTTCTCTGGAAGAGGCTTTTGTTATACCAAATCAGCAGGTTGCACTAGGCCATATTGGGAAGAGAGGATCAACAGTTGGTGTGACCAAGGAAAAGAGGATTAAGTATGCATTATCTCAATAA
BLAST of CmoCh07G002380 vs. Swiss-Prot
Match: RPB2_SOLLC (DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 8.9e-65 Identity = 128/176 (72.73%), Postives = 141/176 (80.11%), Query Frame = 1
BLAST of CmoCh07G002380 vs. Swiss-Prot
Match: NRPB2_ARATH (DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana GN=NRPB2 PE=1 SV=2) HSP 1 Score: 246.5 bits (628), Expect = 2.6e-64 Identity = 127/176 (72.16%), Postives = 140/176 (79.55%), Query Frame = 1
BLAST of CmoCh07G002380 vs. Swiss-Prot
Match: RPB2_DICDI (DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum GN=polr2b PE=3 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 7.3e-43 Identity = 92/177 (51.98%), Postives = 128/177 (72.32%), Query Frame = 1
BLAST of CmoCh07G002380 vs. Swiss-Prot
Match: RPB2_SCHPO (DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2) HSP 1 Score: 169.1 bits (427), Expect = 5.3e-41 Identity = 90/179 (50.28%), Postives = 127/179 (70.95%), Query Frame = 1
BLAST of CmoCh07G002380 vs. Swiss-Prot
Match: RPB2_HUMAN (DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1) HSP 1 Score: 167.5 bits (423), Expect = 1.5e-40 Identity = 93/179 (51.96%), Postives = 121/179 (67.60%), Query Frame = 1
BLAST of CmoCh07G002380 vs. TrEMBL
Match: G7I5Y3_MEDTR (DNA-directed RNA polymerase subunit beta OS=Medicago truncatula GN=MTR_1g023500 PE=3 SV=2) HSP 1 Score: 254.6 bits (649), Expect = 1.1e-64 Identity = 132/176 (75.00%), Postives = 142/176 (80.68%), Query Frame = 1
BLAST of CmoCh07G002380 vs. TrEMBL
Match: A0A0S3S2L8_PHAAN (DNA-directed RNA polymerase subunit beta OS=Vigna angularis var. angularis GN=Vigan.05G041800 PE=3 SV=1) HSP 1 Score: 254.2 bits (648), Expect = 1.4e-64 Identity = 132/176 (75.00%), Postives = 142/176 (80.68%), Query Frame = 1
BLAST of CmoCh07G002380 vs. TrEMBL
Match: A0A0L9VFK0_PHAAN (DNA-directed RNA polymerase subunit beta OS=Phaseolus angularis GN=LR48_Vigan09g244200 PE=3 SV=1) HSP 1 Score: 254.2 bits (648), Expect = 1.4e-64 Identity = 132/176 (75.00%), Postives = 142/176 (80.68%), Query Frame = 1
BLAST of CmoCh07G002380 vs. TrEMBL
Match: A0A0A0KNB9_CUCSA (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=Csa_6G517340 PE=3 SV=1) HSP 1 Score: 254.2 bits (648), Expect = 1.4e-64 Identity = 132/176 (75.00%), Postives = 141/176 (80.11%), Query Frame = 1
BLAST of CmoCh07G002380 vs. TrEMBL
Match: B9RZ91_RICCO (DNA-directed RNA polymerase subunit beta OS=Ricinus communis GN=RCOM_0936370 PE=3 SV=1) HSP 1 Score: 253.8 bits (647), Expect = 1.8e-64 Identity = 131/176 (74.43%), Postives = 142/176 (80.68%), Query Frame = 1
BLAST of CmoCh07G002380 vs. TAIR10
Match: AT4G21710.1 (AT4G21710.1 DNA-directed RNA polymerase family protein) HSP 1 Score: 246.5 bits (628), Expect = 1.5e-65 Identity = 127/176 (72.16%), Postives = 140/176 (79.55%), Query Frame = 1
BLAST of CmoCh07G002380 vs. TAIR10
Match: AT5G45140.1 (AT5G45140.1 nuclear RNA polymerase C2) HSP 1 Score: 56.6 bits (135), Expect = 2.1e-08 Identity = 47/168 (27.98%), Postives = 80/168 (47.62%), Query Frame = 1
BLAST of CmoCh07G002380 vs. TAIR10
Match: AT3G18090.1 (AT3G18090.1 nuclear RNA polymerase D2B) HSP 1 Score: 56.2 bits (134), Expect = 2.8e-08 Identity = 40/146 (27.40%), Postives = 66/146 (45.21%), Query Frame = 1
BLAST of CmoCh07G002380 vs. TAIR10
Match: AT3G23780.1 (AT3G23780.1 nuclear RNA polymerase D2A) HSP 1 Score: 55.5 bits (132), Expect = 4.8e-08 Identity = 40/146 (27.40%), Postives = 65/146 (44.52%), Query Frame = 1
BLAST of CmoCh07G002380 vs. NCBI nr
Match: gi|922395497|ref|XP_003589372.2| (DNA-directed RNA polymerase subunit beta [Medicago truncatula]) HSP 1 Score: 254.6 bits (649), Expect = 1.5e-64 Identity = 132/176 (75.00%), Postives = 142/176 (80.68%), Query Frame = 1
BLAST of CmoCh07G002380 vs. NCBI nr
Match: gi|965599899|dbj|BAT87077.1| (hypothetical protein VIGAN_05041800 [Vigna angularis var. angularis]) HSP 1 Score: 254.2 bits (648), Expect = 2.0e-64 Identity = 132/176 (75.00%), Postives = 142/176 (80.68%), Query Frame = 1
BLAST of CmoCh07G002380 vs. NCBI nr
Match: gi|449433841|ref|XP_004134705.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform X1 [Cucumis sativus]) HSP 1 Score: 254.2 bits (648), Expect = 2.0e-64 Identity = 132/176 (75.00%), Postives = 141/176 (80.11%), Query Frame = 1
BLAST of CmoCh07G002380 vs. NCBI nr
Match: gi|920712534|gb|KOM53783.1| (hypothetical protein LR48_Vigan09g244200 [Vigna angularis]) HSP 1 Score: 254.2 bits (648), Expect = 2.0e-64 Identity = 132/176 (75.00%), Postives = 142/176 (80.68%), Query Frame = 1
BLAST of CmoCh07G002380 vs. NCBI nr
Match: gi|700194022|gb|KGN49226.1| (hypothetical protein Csa_6G517340 [Cucumis sativus]) HSP 1 Score: 254.2 bits (648), Expect = 2.0e-64 Identity = 132/176 (75.00%), Postives = 141/176 (80.11%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |