CmaCh07G002430 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G002430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	DNA-directed RNA polymerase II subunit 2
Location	Cma_Chr07 : 1101447 .. 1102448 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAATCCTGTCACTGGAGCTCCTCGGTATTTTTAAATAGCTAGGCGATCTGGTTGTTAACTTGATCAGTGCTCAGGTTGTCAAGGCCCTTTTTTATTCAATGATTGATCCCTAAAGCAGGTACCAACCAGGTGTTTTCTACTCATTTGAAAATTGTAGCATCAGATAAGATCTCTTTGGTTGTTTGGAAAAGTGTGCTTATGCTGATTATGTTCTAACTTCCTTTTCAAAACAGATATGTATTGGTATTGCATTTATTCTGGCATACGGAAATTATTTGTAACAAGCAATTAGATTGTTGTCTTTTTATTTTGTATCATAATTCTGAGAAGGATCTTACCGAGCTTAGGGAGTGTCCATATGACCAGGGAGGATATTTTATCATCAATGAGAGTGAGAAGGTTCTTATTGCACAAGAGAAGATGTGCATAAAATATGTTTCCAAAAAAGGACAGCCAAACAAGTACACCTTTGTGGCAGACGTCTGGTCTATGGCTGAGTCACAAAATAGACCACCTAATAACATGTTTGCACACAATAGTTGCTTTCTTGAACTAGTGCCAAGGGGGTAGTGTACTTATCTTCGTTTTCTGAAGATTTGGAAGTTCTTCCTCCTTGTTGAAGTAAAAGCTATTCTAACCTATTCTTTTTGCAATTCGTCAATGTTCTTTCAGGTCTTCAGGACAATACATGCATGCCACTCTGCCTGAAACCCAAACTGAGATTATGATTATTATTGTGTTTCGTGCTCGAGGACTTGTTCCTGATAAAGATCTTCTAGAGCATGTATGTTATGAATTCTGTGATACTCAAATGATGGAGTTGCTTCAGTCTTCTCTGGAAGAGGCTTTTGTTATACCAAATCAGCAGGCACCCATTTCTTTGATACTTGTCTATCATCCTGTTCTTTCTCTCTCTCTCATGCTCACACCAACAATGTTTCTTGACTGTAGGTTGCACTGGGCCATATTGGGAAGAGAGGATCAACAGTTGGTGTGA

mRNA sequence

ATGACCAATCCTGTCACTGGAGCTCCTCGGTCTTCAGGACAATACATGCATGCCACTCTGCCTGAAACCCAAACTGAGATTATGATTATTATTGTGTTTCGTGCTCGAGGACTTGTTCCTGATAAAGATCTTCTAGAGCATGTATGTTATGAATTCTGTGATACTCAAATGATGGAGTTGCTTCAGTCTTCTCTGGAAGAGGCTTTTGTTATACCAAATCAGCAGGCACCCATTTCTTTGATACTTGTCTATCATCCTGTTCTTTCTCTCTCTCTCATGCTCACACCAACAATGTTTCTTGACTGTAGGTTGCACTGGGCCATATTGGGAAGAGAGGATCAACAGTTGGTGTGA

Coding sequence (CDS)

ATGACCAATCCTGTCACTGGAGCTCCTCGGTCTTCAGGACAATACATGCATGCCACTCTGCCTGAAACCCAAACTGAGATTATGATTATTATTGTGTTTCGTGCTCGAGGACTTGTTCCTGATAAAGATCTTCTAGAGCATGTATGTTATGAATTCTGTGATACTCAAATGATGGAGTTGCTTCAGTCTTCTCTGGAAGAGGCTTTTGTTATACCAAATCAGCAGGCACCCATTTCTTTGATACTTGTCTATCATCCTGTTCTTTCTCTCTCTCTCATGCTCACACCAACAATGTTTCTTGACTGTAGGTTGCACTGGGCCATATTGGGAAGAGAGGATCAACAGTTGGTGTGA

Protein sequence

MTNPVTGAPRSSGQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSLEEAFVIPNQQAPISLILVYHPVLSLSLMLTPTMFLDCRLHWAILGREDQQLV

Homology

[Close]

BLAST of CmaCh07G002430 vs. Swiss-Prot
Match: RPB2_SOLLC (DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-20
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 11  SSGQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSLEEAFV 70
           SSGQY+ ATLP  +TEI IIIVFRA G V DKD+LEH+CY+F DTQMMELL+ SLEEAFV
Sbjct: 255 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFV 314

Query: 71  IPNQQAPISLI 82
           I NQQ  +  I
Sbjct: 315 IQNQQVALDYI 325

[Close]

BLAST of CmaCh07G002430 vs. Swiss-Prot
Match: NRPB2_ARATH (DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana GN=NRPB2 PE=1 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-19
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 11  SSGQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSLEEAFV 70
           SSGQY+  TLP  +TEI IIIVFRA G V DKD+LEH+CY+F DTQMMELL+ SLEEAFV
Sbjct: 256 SSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFV 315

Query: 71  IPNQQAPISLI 82
           I NQ   +  I
Sbjct: 316 IQNQLVALDYI 326

[Close]

BLAST of CmaCh07G002430 vs. Swiss-Prot
Match: RPB2_SCHPO (DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-13
Identity = 35/71 (49.30%), Postives = 54/71 (76.06%), Query Frame = 1


Query: 11  SSGQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSLEEAFV 70
           +SGQ + ATLP  +++I I+IVFRA G+VPD+D+LEH+CY+  D QM+E+++  +EEAFV
Sbjct: 250 NSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFV 309

Query: 71  IPNQQAPISLI 82
           I ++   +  I
Sbjct: 310 IQDKDIALDYI 320

[Close]

BLAST of CmaCh07G002430 vs. Swiss-Prot
Match: RPB2_HUMAN (DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-13
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 1


Query: 7   GAPRSS-GQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSL 66
           GA +S+ GQ + ATLP  + E+ IIIVFRA G V D+D+LEH+ Y+F D +MME+++ SL
Sbjct: 246 GAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSL 305

Query: 67  EEAFVIPNQQAPISLI 82
           +EAFVI  Q   ++ I
Sbjct: 306 DEAFVIQEQNVALNFI 321

[Close]

BLAST of CmaCh07G002430 vs. Swiss-Prot
Match: RPB2_MOUSE (DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-13
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 1


Query: 7   GAPRSS-GQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSL 66
           GA +S+ GQ + ATLP  + E+ IIIVFRA G V D+D+LEH+ Y+F D +MME+++ SL
Sbjct: 246 GAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSL 305

Query: 67  EEAFVIPNQQAPISLI 82
           +EAFVI  Q   ++ I
Sbjct: 306 DEAFVIQEQNVALNFI 321

[Close]

BLAST of CmaCh07G002430 vs. TrEMBL
Match: G0TA07_9ERIC (RNA polymerase II second largest subunit (Fragment) OS=Rhododendron edgeworthii GN=RPB2D PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 11  SSGQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSLEEAFV 70
           SSGQY+ ATLP  +TEI IIIVFRA G V DKD+LEH+CY+F DTQMMELL+ SLEEAFV
Sbjct: 99  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFV 158

Query: 71  IPNQQAPISLI 82
           I NQQ  +  I
Sbjct: 159 IQNQQVALDYI 169

[Close]

BLAST of CmaCh07G002430 vs. TrEMBL
Match: G0T9U5_9ERIC (RNA polymerase II second largest subunit (Fragment) OS=Rhododendron zoelleri GN=RPB2D PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 11  SSGQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSLEEAFV 70
           SSGQY+ ATLP  +TEI IIIVFRA G V DKD+LEH+CY+F DTQMMELL+ SLEEAFV
Sbjct: 99  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFV 158

Query: 71  IPNQQAPISLI 82
           I NQQ  +  I
Sbjct: 159 IQNQQVALDYI 169

[Close]

BLAST of CmaCh07G002430 vs. TrEMBL
Match: G0T9V3_9ERIC (RNA polymerase II second largest subunit (Fragment) OS=Rhododendron yelliottii GN=RPB2D PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 11  SSGQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSLEEAFV 70
           SSGQY+ ATLP  +TEI IIIVFRA G V DKD+LEH+CY+F DTQMMELL+ SLEEAFV
Sbjct: 99  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFV 158

Query: 71  IPNQQAPISLI 82
           I NQQ  +  I
Sbjct: 159 IQNQQVALDYI 169

[Close]

BLAST of CmaCh07G002430 vs. TrEMBL
Match: G0T9Y2_9ERIC (RNA polymerase II second largest subunit (Fragment) OS=Rhododendron brookeanum GN=RPB2D PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 11  SSGQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSLEEAFV 70
           SSGQY+ ATLP  +TEI IIIVFRA G V DKD+LEH+CY+F DTQMMELL+ SLEEAFV
Sbjct: 99  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFV 158

Query: 71  IPNQQAPISLI 82
           I NQQ  +  I
Sbjct: 159 IQNQQVALDYI 169

[Close]

BLAST of CmaCh07G002430 vs. TrEMBL
Match: G0T9V2_9ERIC (RNA polymerase II second largest subunit (Fragment) OS=Rhododendron inconspicuum GN=RPB2D PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 11  SSGQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSLEEAFV 70
           SSGQY+ ATLP  +TEI IIIVFRA G V DKD+LEH+CY+F DTQMMELL+ SLEEAFV
Sbjct: 99  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFV 158

Query: 71  IPNQQAPISLI 82
           I NQQ  +  I
Sbjct: 159 IQNQQVALDYI 169

[Close]

BLAST of CmaCh07G002430 vs. TAIR10
Match: AT4G21710.1 (AT4G21710.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-20
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 11  SSGQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSLEEAFV 70
           SSGQY+  TLP  +TEI IIIVFRA G V DKD+LEH+CY+F DTQMMELL+ SLEEAFV
Sbjct: 256 SSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFV 315

Query: 71  IPNQQAPISLI 82
           I NQ   +  I
Sbjct: 316 IQNQLVALDYI 326

[Close]

BLAST of CmaCh07G002430 vs. NCBI nr
Match: gi|922395497|ref|XP_003589372.2| (DNA-directed RNA polymerase subunit beta [Medicago truncatula])

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 11  SSGQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSLEEAFV 70
           SSGQY+ ATLP  +TEI IIIVFRA G V DKD+LEH+CY+F DTQMMELL+ SLEEAFV
Sbjct: 259 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFV 318

Query: 71  IPNQQAPISLI 82
           I NQQ  +  I
Sbjct: 319 IQNQQVALDYI 329

[Close]

BLAST of CmaCh07G002430 vs. NCBI nr
Match: gi|68131866|gb|AAY85211.1| (RNA polymerase II second largest subunit, partial [Gunnera chilensis])

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 11  SSGQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSLEEAFV 70
           +SGQY+ ATLP  +TEI IIIVFRA G V DKD+LEH+CYEF DTQMMELL+ SLEEAFV
Sbjct: 151 ASGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYEFADTQMMELLRPSLEEAFV 210

Query: 71  IPNQQAPISLI 82
           I NQQ  +  I
Sbjct: 211 IQNQQVALDYI 221

[Close]

BLAST of CmaCh07G002430 vs. NCBI nr
Match: gi|743846844|ref|XP_011027835.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Populus euphratica])

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 11  SSGQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSLEEAFV 70
           SSGQY+ ATLP  +TEI IIIVFRA G V DKD+LEH+CY+F DTQMMELL+ SLEEAFV
Sbjct: 262 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFV 321

Query: 71  IPNQQAPISLI 82
           I NQQ  +  I
Sbjct: 322 IQNQQVALDYI 332

[Close]

BLAST of CmaCh07G002430 vs. NCBI nr
Match: gi|566164872|ref|XP_002305136.2| (hypothetical protein POPTR_0004s04320g [Populus trichocarpa])

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 11  SSGQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSLEEAFV 70
           SSGQY+ ATLP  +TEI IIIVFRA G V DKD+LEH+CY+F DTQMMELL+ SLEEAFV
Sbjct: 270 SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFV 329

Query: 71  IPNQQAPISLI 82
           I NQQ  +  I
Sbjct: 330 IQNQQVALDYI 340

[Close]

BLAST of CmaCh07G002430 vs. NCBI nr
Match: gi|319771876|gb|ADV72310.1| (RNA polymerase II second largest subunit, partial [Rhododendron superbum])

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 11  SSGQYMHATLPETQTEIMIIIVFRARGLVPDKDLLEHVCYEFCDTQMMELLQSSLEEAFV 70
           SSGQY+ ATLP  +TEI IIIVFRA G V DKD+LEH+CY+F DTQMMELL+ SLEEAFV
Sbjct: 99  SSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFV 158

Query: 71  IPNQQAPISLI 82
           I NQQ  +  I
Sbjct: 159 IQNQQVALDYI 169

The following BLAST results are available for this feature:

BLAST of CmaCh07G002430 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPB2_SOLLC	2.2e-20	70.42	DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2...	[more]
NRPB2_ARATH	1.8e-19	67.61	DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana GN=NRPB2 PE=1 S...	[more]
RPB2_SCHPO	2.0e-13	49.30	DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces pombe (strain...	[more]
RPB2_HUMAN	4.4e-13	51.32	DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1	[more]
RPB2_MOUSE	4.4e-13	51.32	DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b PE=1 SV=2	[more]

BLAST of CmaCh07G002430 vs. TrEMBL


Match Name	E-value	Identity	Description
G0TA07_9ERIC	1.1e-18	70.42	RNA polymerase II second largest subunit (Fragment) OS=Rhododendron edgeworthii ...	[more]
G0T9U5_9ERIC	1.1e-18	70.42	RNA polymerase II second largest subunit (Fragment) OS=Rhododendron zoelleri GN=...	[more]
G0T9V3_9ERIC	1.1e-18	70.42	RNA polymerase II second largest subunit (Fragment) OS=Rhododendron yelliottii G...	[more]
G0T9Y2_9ERIC	1.1e-18	70.42	RNA polymerase II second largest subunit (Fragment) OS=Rhododendron brookeanum G...	[more]
G0T9V2_9ERIC	1.1e-18	70.42	RNA polymerase II second largest subunit (Fragment) OS=Rhododendron inconspicuum...	[more]

BLAST of CmaCh07G002430 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21710.1	1.0e-20	67.61	DNA-directed RNA polymerase family protein	[more]

BLAST of CmaCh07G002430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|922395497\|ref\|XP_003589372.2\|	1.5e-18	70.42	DNA-directed RNA polymerase subunit beta [Medicago truncatula]	[more]
gi\|68131866\|gb\|AAY85211.1\|	1.5e-18	70.42	RNA polymerase II second largest subunit, partial [Gunnera chilensis]	[more]
gi\|743846844\|ref\|XP_011027835.1\|	1.5e-18	70.42	PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Populus euphratica]	[more]
gi\|566164872\|ref\|XP_002305136.2\|	1.5e-18	70.42	hypothetical protein POPTR_0004s04320g [Populus trichocarpa]	[more]
gi\|319771876\|gb\|ADV72310.1\|	1.5e-18	70.42	RNA polymerase II second largest subunit, partial [Rhododendron superbum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007642	RNA_pol_Rpb2_2
IPR015712	DNA-dir_RNA_pol_su2

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0032549	ribonucleoside binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006366	transcription from RNA polymerase II promoter
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G002430.1	CmaCh07G002430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007642	RNA polymerase Rpb2, domain 2	GENE3D	G3DSA:3.90.1110.10		coord: 10..79 score: 9.0
IPR007642	RNA polymerase Rpb2, domain 2	PFAM	PF04561	RNA_pol_Rpb2_2	coord: 11..80 score: 1.1
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 10..81 score: 1.1
None	No IPR available	PANTHER	PTHR20856:SF7	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2	coord: 10..81 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh07G002430	CmoCh03G012580	Cucurbita moschata (Rifu)	cmacmoB861
CmaCh07G002430	CmoCh07G002380	Cucurbita moschata (Rifu)	cmacmoB875
CmaCh07G002430	Lsi01G003180	Bottle gourd (USVL1VR-Ls)	cmalsiB786
CmaCh07G002430	Cp4.1LG19g07220	Cucurbita pepo (Zucchini)	cmacpeB880
CmaCh07G002430	Cp4.1LG10g05000	Cucurbita pepo (Zucchini)	cmacpeB861
CmaCh07G002430	MELO3C007284.2	Melon (DHL92) v3.6.1	cmamedB897
CmaCh07G002430	CsaV3_6G050130	Cucumber (Chinese Long) v3	cmacucB1035
CmaCh07G002430	Cla97C01G022860	Watermelon (97103) v2	cmawmbB875
CmaCh07G002430	Bhi03G000321	Wax gourd	cmawgoB1058
CmaCh07G002430	CsGy6G034140	Cucumber (Gy14) v2	cgybcmaB861
CmaCh07G002430	Carg15292	Silver-seed gourd	carcmaB0766

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh07G002430	CmaCh03G012620	Cucurbita maxima (Rimu)	cmacmaB528

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh07G002430	Cucurbita pepo (Zucchini)	cmacpeB859
CmaCh07G002430	Cucurbita pepo (Zucchini)	cmacpeB881
CmaCh07G002430	Cucurbita pepo (Zucchini)	cmacpeB887
CmaCh07G002430	Bottle gourd (USVL1VR-Ls)	cmalsiB796
CmaCh07G002430	Cucumber (Gy14) v2	cgybcmaB142
CmaCh07G002430	Silver-seed gourd	carcmaB1300
CmaCh07G002430	Melon (DHL92) v3.6.1	cmamedB883
CmaCh07G002430	Silver-seed gourd	carcmaB0201
CmaCh07G002430	Silver-seed gourd	carcmaB0229
CmaCh07G002430	Silver-seed gourd	carcmaB0914
CmaCh07G002430	Cucumber (Chinese Long) v3	cmacucB1005
CmaCh07G002430	Watermelon (97103) v2	cmawmbB880
CmaCh07G002430	Wax gourd	cmawgoB1086
CmaCh07G002430	Cucurbita maxima (Rimu)	cmacmaB069
CmaCh07G002430	Cucurbita maxima (Rimu)	cmacmaB238
CmaCh07G002430	Cucurbita maxima (Rimu)	cmacmaB413
CmaCh07G002430	Cucurbita maxima (Rimu)	cmacmaB439
CmaCh07G002430	Cucurbita maxima (Rimu)	cmacmaB464
CmaCh07G002430	Cucurbita maxima (Rimu)	cmacmaB508
CmaCh07G002430	Cucumber (Gy14) v1	cgycmaB0048
CmaCh07G002430	Cucumber (Gy14) v1	cgycmaB0341
CmaCh07G002430	Cucurbita moschata (Rifu)	cmacmoB847
CmaCh07G002430	Cucurbita moschata (Rifu)	cmacmoB849
CmaCh07G002430	Wild cucumber (PI 183967)	cmacpiB865
CmaCh07G002430	Wild cucumber (PI 183967)	cmacpiB893
CmaCh07G002430	Cucumber (Chinese Long) v2	cmacuB848
CmaCh07G002430	Cucumber (Chinese Long) v2	cmacuB877
CmaCh07G002430	Melon (DHL92) v3.5.1	cmameB782
CmaCh07G002430	Melon (DHL92) v3.5.1	cmameB798
CmaCh07G002430	Watermelon (Charleston Gray)	cmawcgB754
CmaCh07G002430	Watermelon (97103) v1	cmawmB826