CmoCh07G000160 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G000160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cytochrome c
Location	Cmo_Chr07 : 96088 .. 98700 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GACCGCCTATTTTCTGTTCCGGTGAAGGCGAGGCGCTACATCCAAAACCCGCCAAAGCGCAGGCCTGCGACGGCGATAGCTCCCGCGTAAGAGACGAAAGAGATGCGTTTTCTCTCCGTAACTTCAGATTTTAGCCTTAGTCCCCATTGCTTTCCACTAAAGGTTGATCTCTCTTCGCTAACTCTTCTTTGTATGCTTCTCTCGCTTAATATCCAAGGTTTTAAAGTTTTAAGCCTACCAGGTACAGCGACGAACTGCTGTTTGTCAAATGCGTAGACAAGTTAAGATTCTCAAGACCTTGGCGCCCCCTCTGATTGCTGTGCTTATAGCGTTATATCCTCTCAACAAAACCCCAGGTGAAACTCTTCCTTTCAATTTGCTACACGATATAAACGCATGATAGCAGCATGATCAAATTTTCCCAGAATCAGGTGTAGGGTGACTGTCTGGAAGTTGCTAAATCGTCGCTAATCTCACATTTGGGGTTAATTTATGAATTTGTGTCTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAAGCATTTTTCATGGATTATCACATCAAACAGATGGTTACCATTTAACGAAAGTCGACTTGTGTATTCAATTAATATTTGGAAGTGTGTGAGAGAAATATCCGCTTCTGACCCCACATTCTGTTTCCTAGTGTTACCGTCTTCCTTCATTCCATGTCAAAAGTTATTCATACGCTCATTAAGCTAAAGTCAGTCCACATTACTATGTAAATTAGGAAACAAATACAAGTATTACAAACTTCCATAAAAATATGCAAAATCATGAGCAACTTGTTTCCTTTGCGGTTTCTGCTGCCCTTTTTGTTTCTTGTTTGCTGTTATTATCTTTAAAAAAAATGTGCATTTCGTGGTTTCTTTTTTCCTTTTTCAAGAAACGATTTCGACATTACACATAGTTTTCCCTAAACAAAAATGTTTACATAATCGATCTTTTATTTCTTACCCCTGTCACGTCAATTTCTTTCTTTCTTTTCTTTTTCAAGCGAAGTTTTTCGTTTGAAATTTGGAAGCCGAAAAACCCAAATTTGAAACGACATCCAATAGACCCTCAATATACTTCTTTCTCTTAACGCATATCAAGGATCTTTTTGACGTGCAATTGTTTATACTTTTTTCTGACTTGGCTGCATCCATGTAATGTGTAAAAAGGATGTTATGCGCTTGCTCAATCGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAGTCACGCTTGCATTGGCTGCCATGATGCTGGGGGAAACATAATTCAACCCGTTAGTGTTCCTATCTATAACACTACTGTTTAAATATTGATAAGCATCTGAGATCTGCTTTAATATGTTGGATTTTGAATTTTTATTAACGGTTATGTGGTTTCAATTTTTTTTCTTTTGCCATTCTTTCTGTGTGCTACATTTCGTTTCTGCAACCGACCTTTTGTCTTCTTCTCTCGTAGGGTGCGACGCTCTTTTCAAGTGATCTTGAAAGGTAATTTTCTAGAACCTTGAGAAAAAATGAAGTTTAATAACAGTATATGATTTCGGCCCAACGTGCATGCAACATTGCGTACTAGTATCACGAGGTATTAGGCGCGGATCTACTTTCTCTTCTCTTCTAATTATGGGTTCTATTTAAAATAATCATTTATTTTTTTTATTTTGTACAAGTGACTATAGTTTAGATTGGTTATAGATGAGGAAGATGGTAGATTCACGATTAAGGGCAATAGCTCTTTTGTTTTATGGACTTTTTGGTAGGGTCCAAAAGATCTACATGGTCTTAGACTCTTAGCTCAAAATGGGAAAAATCAGGCAAATATGCCAAGAACTGATTTTTTTTTTTTTTTTTTTTTNACTTCTGCTTCTAAAATATATTGGGGAGGGTACGGGGCGGTGAACATCCAATCAACCCTGAAGGAAATTTGAAGATTGAATTGGTGCGTTCCTATCAGTAAATTTTTCAAGGGAAATATACAAAACTCATTGCAACAGAGGACGTCATAAACGAGGCAACAATATGTATTCTACTGGACAAGCACCCTATAACACCCTGCTTGTGTTAAAAAAAAAAAAAAAAAAAAAAAAACTATTTTACAAAGAGTCTGTATATAATAAAATTCTCGAAATTTCTCCTTATCCAGCAATGCAGAAATCGCTTTACCAATTGTGTTTATGAGGTGATTGAACCAAGTCGAACGATAGTGAATGGTTGTTGTCTTGAAACCATAGGCTTGAGCTATTAGTTCTATAACCCTTTGCTCTGTTTCATTGTTCCTTTTTATAGAAACGGAGCTGATTCTGAAGAGGAGATTTACCAAATTACATATTACGGGAAAGGAAGAATGCCTGTAAGTGATTATTTGTTAATATTATGACTGTAACCAATATGGCTCTATTAGTTCAACGATTGGTGATGGGTTTCAGGGTTTCGGTGAAAACTGCAAGCCAAGGGGTCAGTGCACATTTGGTCCCCGTTTGCAGGAGGAAGAGATTAGGGTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCAAACCCATAG

mRNA sequence

GACCGCCTATTTTCTGTTCCGGTGAAGGCGAGGCGCTACATCCAAAACCCGCCAAAGCGCAGGCCTGCGACGGCGATAGCTCCCGCGTAAGAGACGAAAGAGATGCGTTTTCTCTCCGTAACTTCAGATTTTAGCCTTAGTCCCCATTGCTTTCCACTAAAGGTACAGCGACGAACTGCTGTTTGTCAAATGCGTAGACAAGTTAAGATTCTCAAGACCTTGGCGCCCCCTCTGATTGCTGTGCTTATAGCGTTATATCCTCTCAACAAAACCCCAGGATGTTATGCGCTTGCTCAATCGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAGTCACGCTTGCATTGGCTGCCATGATGCTGGGGGAAACATAATTCAACCCGGTGCGACGCTCTTTTCAAGTGATCTTGAAAGAAACGGAGCTGATTCTGAAGAGGAGATTTACCAAATTACATATTACGGGAAAGGAAGAATGCCTGGTTTCGGTGAAAACTGCAAGCCAAGGGGTCAGTGCACATTTGGTCCCCGTTTGCAGGAGGAAGAGATTAGGGTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCAAACCCATAG

Coding sequence (CDS)

ATGCGTTTTCTCTCCGTAACTTCAGATTTTAGCCTTAGTCCCCATTGCTTTCCACTAAAGGTACAGCGACGAACTGCTGTTTGTCAAATGCGTAGACAAGTTAAGATTCTCAAGACCTTGGCGCCCCCTCTGATTGCTGTGCTTATAGCGTTATATCCTCTCAACAAAACCCCAGGATGTTATGCGCTTGCTCAATCGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAGTCACGCTTGCATTGGCTGCCATGATGCTGGGGGAAACATAATTCAACCCGGTGCGACGCTCTTTTCAAGTGATCTTGAAAGAAACGGAGCTGATTCTGAAGAGGAGATTTACCAAATTACATATTACGGGAAAGGAAGAATGCCTGGTTTCGGTGAAAACTGCAAGCCAAGGGGTCAGTGCACATTTGGTCCCCGTTTGCAGGAGGAAGAGATTAGGGTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCAAACCCATAG

Homology

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BLAST of CmoCh07G000160 vs. Swiss-Prot
Match: CYC6_ARATH (Cytochrome c6, chloroplastic OS=Arabidopsis thaliana GN=PETJ PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 8.3e-50
Identity = 90/129 (69.77%), Postives = 109/129 (84.50%), Query Frame = 1


Query: 36  ILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGA 95
           +LK LAPPL AVL+A+ P+   P   +L Q+ +I+RG  LF+ ACIGCHD GGNIIQPGA
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPPE--SLGQTLDIQRGATLFNRACIGCHDTGGNIIQPGA 103

Query: 96  TLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFV 155
           TLF+ DLERNG D+EEEIY++TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI++LA+FV
Sbjct: 104 TLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFV 163

Query: 156 KIQADRGWP 165
           K QAD+GWP
Sbjct: 164 KFQADQGWP 170

[Close]

BLAST of CmoCh07G000160 vs. Swiss-Prot
Match: CYC6_SYNE7 (Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942) GN=petJ PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 41/129 (31.78%), Postives = 62/129 (48.06%), Query Frame = 1


Query: 35  KILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPG 94
           +IL T    L+ +L  + P          AQ+A++  GG +FS  C  CH  G N++ P 
Sbjct: 3   RILGTAIAALVVLLAFIAP----------AQAADLAHGGQVFSANCAACHLGGRNVVNPA 62

Query: 95  ATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKF 154
            TL  +DL++ G  S E I      GKG MP FG             +L  ++I  +A +
Sbjct: 63  KTLQKADLDQYGMASIEAITTQVTNGKGAMPAFGS------------KLSADDIADVASY 109

Query: 155 VKIQADRGW 164
           V  Q+++GW
Sbjct: 123 VLDQSEKGW 109

[Close]

BLAST of CmoCh07G000160 vs. Swiss-Prot
Match: CYC6_SYNP6 (Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petJ PE=1 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 41/129 (31.78%), Postives = 62/129 (48.06%), Query Frame = 1


Query: 35  KILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPG 94
           +IL T    L+ +L  + P          AQ+A++  GG +FS  C  CH  G N++ P 
Sbjct: 3   RILGTAIAALVVLLAFIAP----------AQAADLAHGGQVFSANCAACHLGGRNVVNPA 62

Query: 95  ATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKF 154
            TL  +DL++ G  S E I      GKG MP FG             +L  ++I  +A +
Sbjct: 63  KTLQKADLDQYGMASIEAITTQVTNGKGAMPAFGS------------KLSADDIADVASY 109

Query: 155 VKIQADRGW 164
           V  Q+++GW
Sbjct: 123 VLDQSEKGW 109

[Close]

BLAST of CmoCh07G000160 vs. Swiss-Prot
Match: CYC6_MICAE (Cytochrome c6 OS=Microcystis aeruginosa GN=petJ PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 7.1e-09
Identity = 33/92 (35.87%), Postives = 43/92 (46.74%), Query Frame = 1


Query: 72  GGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENC 131
           G ++FS  C  CH  G N++    TL   DL + G DS E I      G G MP FG   
Sbjct: 2   GASIFSANCASCHMGGKNVVNAAKTLKKEDLVKYGKDSVEAIVTQVTKGMGAMPAFGG-- 61

Query: 132 KPRGQCTFGPRLQEEEIRVLAKFVKIQADRGW 164
                     RL  E+I  +A +V  QA++GW
Sbjct: 62  ----------RLSAEDIEAVANYVLAQAEKGW 81

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BLAST of CmoCh07G000160 vs. Swiss-Prot
Match: CYC6_APHFL (Cytochrome c6 OS=Aphanizomenon flos-aquae GN=petJ PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 35/97 (36.08%), Postives = 45/97 (46.39%), Query Frame = 1


Query: 67  AEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPG 126
           A+   G ALF   C  CH  GGN++    TL    LE+    S + I     +GKG MP 
Sbjct: 1   ADTVSGAALFKANCAQCHVGGGNLVNRAKTLKKEALEKYNMYSAKAIIAQVTHGKGAMP- 60

Query: 127 FGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGW 164
                       FG RL+ E+I  +A +V  QAD GW
Sbjct: 61  -----------AFGIRLKAEQIENVAAYVLEQADNGW 85

[Close]

BLAST of CmoCh07G000160 vs. TrEMBL
Match: A0A0A0KPD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G538600 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.4e-66
Identity = 122/148 (82.43%), Postives = 133/148 (89.86%), Query Frame = 1


Query: 19  LKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSH 78
           L  +RRT VCQ+R QVKILK L PPLIA+L+ L PLNKT GC  LA++ EIERGGALF+ 
Sbjct: 7   LSGKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKTSGCLVLAETIEIERGGALFNQ 66

Query: 79  ACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCT 138
           +CIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+ITY GKGRMPGFGENCKPRGQCT
Sbjct: 67  SCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYDGKGRMPGFGENCKPRGQCT 126

Query: 139 FGPRLQEEEIRVLAKFVKIQADRGWPNP 167
           FGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 127 FGPRLQEEEIRLLAKFVKIQADRGWPNP 154

[Close]

BLAST of CmoCh07G000160 vs. TrEMBL
Match: D7T9J4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01850 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.9e-53
Identity = 100/142 (70.42%), Postives = 121/142 (85.21%), Query Frame = 1


Query: 24  RTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGC 83
           +T V + ++QVK LK LAPPL+A ++AL P+  TP   +LAQ+ +I+RG ALF  ACIGC
Sbjct: 28  KTPVHEKQKQVKFLKGLAPPLMAAVVALSPICNTP--VSLAQTTDIQRGAALFGRACIGC 87

Query: 84  HDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRL 143
           HDAGGNIIQPGATLF  DL+RNG D+EEEIY++TYYGKGRMPGFGENC PRGQCTFG RL
Sbjct: 88  HDAGGNIIQPGATLFLKDLQRNGVDTEEEIYRVTYYGKGRMPGFGENCTPRGQCTFGARL 147

Query: 144 QEEEIRVLAKFVKIQADRGWPN 166
           QEEEI++LA+FVK+QAD+GWPN
Sbjct: 148 QEEEIKLLAEFVKLQADQGWPN 167

[Close]

BLAST of CmoCh07G000160 vs. TrEMBL
Match: A0A061GDA8_THECC (Cytochrome c OS=Theobroma cacao GN=TCM_029387 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.3e-51
Identity = 100/169 (59.17%), Postives = 126/169 (74.56%), Query Frame = 1


Query: 1   MRFLSVTSDFSLSPHCFPLKVQRRTAVCQMRRQ----VKILKTLAPPLIAVLIALYPLNK 60
           M  +S  S  S +  CF +K         ++ +    VK+ K LAPPLIA  +AL P+  
Sbjct: 1   MEIVSAVSGCSNTARCFLVKGNANQGGPPLKLKQVGRVKLFKNLAPPLIAAFVALSPICS 60

Query: 61  TPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQI 120
           TP   ALAQ+ +I+RG  LF  ACIGCHD GGNIIQPGATLF+ DL+RNG D+EEEIY++
Sbjct: 61  TP---ALAQTVDIQRGATLFRQACIGCHDGGGNIIQPGATLFTKDLQRNGVDTEEEIYRV 120

Query: 121 TYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPN 166
           TY+GKGRMPGFGE+C PRGQCTFGPRL+E+EI++LA+FVK+QAD+GWPN
Sbjct: 121 TYFGKGRMPGFGESCTPRGQCTFGPRLKEDEIKLLAEFVKLQADQGWPN 166

[Close]

BLAST of CmoCh07G000160 vs. TrEMBL
Match: A0A0D2UG51_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G168700 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.8e-51
Identity = 101/169 (59.76%), Postives = 125/169 (73.96%), Query Frame = 1


Query: 1   MRFLSVTSDFSLSPHCFPLKVQRRTAVCQMRR--QVKI--LKTLAPPLIAVLIALYPLNK 60
           M  LS  S  S  P C  +K     A  +++   QVKI   K + PPL+A  +AL P+  
Sbjct: 1   MEILSAVSPCSYVPRCLLVKGNANQAPSKLKHVEQVKIPHFKNMFPPLVAAFVALSPICN 60

Query: 61  TPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQI 120
           TP   A+AQS +I+RG  LF  ACIGCHD GGNIIQPGATLF+ DLERNG  +E++IY+I
Sbjct: 61  TP---AIAQSVDIQRGATLFGQACIGCHDGGGNIIQPGATLFTKDLERNGVVTEDDIYRI 120

Query: 121 TYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPN 166
           TYYGKGRMPGFGE+C PRGQCTFGPRL+E+EI++LA+FVK+QAD+GWPN
Sbjct: 121 TYYGKGRMPGFGESCTPRGQCTFGPRLKEDEIKLLAEFVKLQADQGWPN 166

[Close]

BLAST of CmoCh07G000160 vs. TrEMBL
Match: U5FN68_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s15410g PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.4e-50
Identity = 92/144 (63.89%), Postives = 121/144 (84.03%), Query Frame = 1


Query: 22  QRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACI 81
           + +  V   +++VK++K+LA PL+A L+AL P+  TP   +L Q+ +++RG +LFS  CI
Sbjct: 62  ESQNPVVLKQKEVKLVKSLALPLMAALVALSPIGNTP--VSLGQTLDVQRGASLFSRTCI 121

Query: 82  GCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGP 141
           GCHDAGGNIIQPGATLF+ DL+RNG D+EEEIY++TY+GKGRMPGFGE+C PRGQCTFGP
Sbjct: 122 GCHDAGGNIIQPGATLFTKDLQRNGVDTEEEIYRMTYFGKGRMPGFGESCTPRGQCTFGP 181

Query: 142 RLQEEEIRVLAKFVKIQADRGWPN 166
           RLQ+EEI++LA+FVK QAD+GWPN
Sbjct: 182 RLQDEEIKLLAQFVKSQADQGWPN 203

[Close]

BLAST of CmoCh07G000160 vs. TAIR10
Match: AT5G45040.1 (AT5G45040.1 Cytochrome c)

HSP 1 Score: 198.0 bits (502), Expect = 4.7e-51
Identity = 90/129 (69.77%), Postives = 109/129 (84.50%), Query Frame = 1


Query: 36  ILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGA 95
           +LK LAPPL AVL+A+ P+   P   +L Q+ +I+RG  LF+ ACIGCHD GGNIIQPGA
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPPE--SLGQTLDIQRGATLFNRACIGCHDTGGNIIQPGA 103

Query: 96  TLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFV 155
           TLF+ DLERNG D+EEEIY++TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI++LA+FV
Sbjct: 104 TLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFV 163

Query: 156 KIQADRGWP 165
           K QAD+GWP
Sbjct: 164 KFQADQGWP 170

[Close]

BLAST of CmoCh07G000160 vs. NCBI nr
Match: gi|659077886|ref|XP_008439440.1| (PREDICTED: cytochrome c6, chloroplastic [Cucumis melo])

HSP 1 Score: 287.7 bits (735), Expect = 1.3e-74
Identity = 138/169 (81.66%), Postives = 149/169 (88.17%), Query Frame = 1


Query: 1   MRFLSVTSDFS---LSPHCFPLKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKT 60
           M+ LSVTSDF     SPH FPL   RRT VCQ+R  VKIL+TLAPPLIA+L+ L PLNKT
Sbjct: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60

Query: 61  PGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQIT 120
           PGC  LA++ EIERGGALF+ ACIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+IT
Sbjct: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120

Query: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 167
           YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 169

[Close]

BLAST of CmoCh07G000160 vs. NCBI nr
Match: gi|449433475|ref|XP_004134523.1| (PREDICTED: cytochrome c6, chloroplastic [Cucumis sativus])

HSP 1 Score: 274.2 bits (700), Expect = 1.5e-70
Identity = 134/169 (79.29%), Postives = 146/169 (86.39%), Query Frame = 1


Query: 1   MRFLSVTSDF---SLSPHCFPLKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKT 60
           M  LSVTS F   + SP+CFP K  RRT VCQ+R QVKILK L PPLIA+L+ L PLNKT
Sbjct: 4   MHLLSVTSHFVAPNTSPYCFPGK--RRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63

Query: 61  PGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQIT 120
            GC  LA++ EIERGGALF+ +CIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+IT
Sbjct: 64  SGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123

Query: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 167
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 124 YDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 170

[Close]

BLAST of CmoCh07G000160 vs. NCBI nr
Match: gi|700194327|gb|KGN49531.1| (hypothetical protein Csa_6G538600 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 6.3e-66
Identity = 122/148 (82.43%), Postives = 133/148 (89.86%), Query Frame = 1


Query: 19  LKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSH 78
           L  +RRT VCQ+R QVKILK L PPLIA+L+ L PLNKT GC  LA++ EIERGGALF+ 
Sbjct: 7   LSGKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKTSGCLVLAETIEIERGGALFNQ 66

Query: 79  ACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCT 138
           +CIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+ITY GKGRMPGFGENCKPRGQCT
Sbjct: 67  SCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYDGKGRMPGFGENCKPRGQCT 126

Query: 139 FGPRLQEEEIRVLAKFVKIQADRGWPNP 167
           FGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 127 FGPRLQEEEIRLLAKFVKIQADRGWPNP 154

[Close]

BLAST of CmoCh07G000160 vs. NCBI nr
Match: gi|731371253|ref|XP_002277599.3| (PREDICTED: cytochrome c6, chloroplastic [Vitis vinifera])

HSP 1 Score: 216.9 bits (551), Expect = 2.7e-53
Identity = 100/142 (70.42%), Postives = 121/142 (85.21%), Query Frame = 1


Query: 24  RTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGC 83
           +T V + ++QVK LK LAPPL+A ++AL P+  TP   +LAQ+ +I+RG ALF  ACIGC
Sbjct: 28  KTPVHEKQKQVKFLKGLAPPLMAAVVALSPICNTP--VSLAQTTDIQRGAALFGRACIGC 87

Query: 84  HDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTFGPRL 143
           HDAGGNIIQPGATLF  DL+RNG D+EEEIY++TYYGKGRMPGFGENC PRGQCTFG RL
Sbjct: 88  HDAGGNIIQPGATLFLKDLQRNGVDTEEEIYRVTYYGKGRMPGFGENCTPRGQCTFGARL 147

Query: 144 QEEEIRVLAKFVKIQADRGWPN 166
           QEEEI++LA+FVK+QAD+GWPN
Sbjct: 148 QEEEIKLLAEFVKLQADQGWPN 167

[Close]

BLAST of CmoCh07G000160 vs. NCBI nr
Match: gi|747097645|ref|XP_011096794.1| (PREDICTED: cytochrome c6, chloroplastic isoform X2 [Sesamum indicum])

HSP 1 Score: 210.7 bits (535), Expect = 2.0e-51
Identity = 100/170 (58.82%), Postives = 131/170 (77.06%), Query Frame = 1


Query: 1   MRFLSVTSDFSLSPHCFPLKVQRRTAVCQ-----MRRQVKILKTLAPPLIAVLIALYPLN 60
           MR LSVT     S +C P   ++R  +        + +VK+LK L PPL+A ++AL P++
Sbjct: 1   MRPLSVTPS---SNYCSPATQRKRMRILGDYGNWRKEEVKLLKLLGPPLVAAVVALSPIS 60

Query: 61  KTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQ 120
             P   ++ ++ ++++GG+LFS ACIGCH AGGNIIQPGATLFS DL+RNG ++EEEIY+
Sbjct: 61  NPP--VSMGETVDVDKGGSLFSRACIGCHAAGGNIIQPGATLFSKDLQRNGVETEEEIYR 120

Query: 121 ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPN 166
           ITYYGKGRMPGFGENC PRGQCTFGPRL+E+EIR+LA+FVK QA++GWPN
Sbjct: 121 ITYYGKGRMPGFGENCTPRGQCTFGPRLREDEIRLLAEFVKSQAEQGWPN 165

The following BLAST results are available for this feature:

BLAST of CmoCh07G000160 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CYC6_ARATH	8.3e-50	69.77	Cytochrome c6, chloroplastic OS=Arabidopsis thaliana GN=PETJ PE=1 SV=1	[more]
CYC6_SYNE7	1.3e-10	31.78	Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942) GN=petJ PE=3 SV=1	[more]
CYC6_SYNP6	1.3e-10	31.78	Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) ...	[more]
CYC6_MICAE	7.1e-09	35.87	Cytochrome c6 OS=Microcystis aeruginosa GN=petJ PE=1 SV=2	[more]
CYC6_APHFL	1.2e-08	36.08	Cytochrome c6 OS=Aphanizomenon flos-aquae GN=petJ PE=1 SV=1	[more]

BLAST of CmoCh07G000160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPD1_CUCSA	4.4e-66	82.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G538600 PE=4 SV=1	[more]
D7T9J4_VITVI	1.9e-53	70.42	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01850 PE=4 SV=...	[more]
A0A061GDA8_THECC	2.3e-51	59.17	Cytochrome c OS=Theobroma cacao GN=TCM_029387 PE=4 SV=1	[more]
A0A0D2UG51_GOSRA	6.8e-51	59.76	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G168700 PE=4 SV=1	[more]
U5FN68_POPTR	3.4e-50	63.89	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s15410g PE=4 SV=1	[more]

BLAST of CmoCh07G000160 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45040.1	4.7e-51	69.77	Cytochrome c	[more]

BLAST of CmoCh07G000160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077886\|ref\|XP_008439440.1\|	1.3e-74	81.66	PREDICTED: cytochrome c6, chloroplastic [Cucumis melo]	[more]
gi\|449433475\|ref\|XP_004134523.1\|	1.5e-70	79.29	PREDICTED: cytochrome c6, chloroplastic [Cucumis sativus]	[more]
gi\|700194327\|gb\|KGN49531.1\|	6.3e-66	82.43	hypothetical protein Csa_6G538600 [Cucumis sativus]	[more]
gi\|731371253\|ref\|XP_002277599.3\|	2.7e-53	70.42	PREDICTED: cytochrome c6, chloroplastic [Vitis vinifera]	[more]
gi\|747097645\|ref\|XP_011096794.1\|	2.0e-51	58.82	PREDICTED: cytochrome c6, chloroplastic isoform X2 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009056	Cyt_c-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0020037	heme binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G000160.1	CmoCh07G000160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009056	Cytochrome c-like domain	GENE3D	G3DSA:1.10.760.10		coord: 66..164 score: 7.7
IPR009056	Cytochrome c-like domain	PFAM	PF13442	Cytochrome_CBB3	coord: 68..133 score: 1.
IPR009056	Cytochrome c-like domain	PROFILE	PS51007	CYTC	coord: 67..159 score: 10
IPR009056	Cytochrome c-like domain	unknown	SSF46626	Cytochrome c	coord: 49..165 score: 1.51
None	No IPR available	PANTHER	PTHR34688	FAMILY NOT NAMED	coord: 29..165 score: 4.4
None	No IPR available	PANTHER	PTHR34688:SF1	CYTOCHROME C6, CHLOROPLASTIC	coord: 29..165 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G000160	Cucsa.048900	Cucumber (Gy14) v1	cgycmoB0043
CmoCh07G000160	CmaCh07G000120	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G000160	Cla009895	Watermelon (97103) v1	cmowmB816
CmoCh07G000160	Csa6G538600	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G000160	MELO3C007008	Melon (DHL92) v3.5.1	cmomeB782
CmoCh07G000160	ClCG01G025800	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G000160	CSPI06G37530	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G000160	Lsi01G000170	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G000160	Cp4.1LG19g05390	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G000160	MELO3C007008.2	Melon (DHL92) v3.6.1	cmomedB886
CmoCh07G000160	CsaV3_6G053010	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G000160	Cla97C01G025970	Watermelon (97103) v2	cmowmbB849
CmoCh07G000160	CsGy6G036910	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G000160	Carg14925	Silver-seed gourd	carcmoB0996

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G000160	Cucurbita pepo (Zucchini)	cmocpeB801
CmoCh07G000160	Silver-seed gourd	carcmoB1439
CmoCh07G000160	Cucurbita moschata (Rifu)	cmocmoB459
CmoCh07G000160	Cucurbita maxima (Rimu)	cmacmoB672