ClCG01G025800 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G025800
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Cytochrome c LENGTH=175
Location	CG_Chr01 : 38851995 .. 38855167 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGGAGCGGAGCACTGTTTGTCCGACCCGCTTATCACTTTGGATTGGACAGCCACAGCCTAATTGGAGTTTGGGGCAGCAGGCACGGCAGCCACAGGCACATCCAAGAGTCCAAGACCCGCCAAAGCGCAGAGAGCCCGCCCGCGTCACGGCGTCAGAGACGAAGGAGATCCAGATGCATCTTCTCTCCGTAACTTCAAATTTTTGCCCTACTCCCCATTGCTTCCCTGTTAAGGTCTCTCTCTCTTCCCTCTCTTTTCTCTGTATGTATTTCTCGCTGGAAACTCAGAGTTCCGAAGTTGTTAGTCAACCAGGGAAAGCGACGGATTGCAGTTTGTCAAATTCGTACACAAGTTAAGATTCTCAAGACCCTGCCTCCCCCTCTCATTGCGGTGCTTATAGCATTATCTCCCCTCAACAACACCCCAGGTGAACCCATACCCATGCGTAACCATTGTATTCACTACTTATCTTTGTTTTTCTTTTAATTTCTTCATCGCTGTGAACGCACATTGTGAAATCTATTACACAAACGTATTCTGTTTTTTAATTAAGCGGCATGATCAAATTTTTTCCGAGAACTAGACGCAATTTGACTGTCTGGATTTTGTCAAATCCTCACTACCCTCAAATTTGGGGCCAATCTTTGAATTTTTGTCATCTTGTTTCAACAATTATCTCGCCATACCGATGCTTTTGAATGTATAGTCGGTTCGTGGATTTACAATTGGAAGCGTAAATACTGTTTCGTCGTGTTCCTAAAAGCTGAAATGATTTGAATGTTGTGGTCTTCGTTCTTGGTATACTGTCAAAGTTAATACATATTAAGCGAAAATCACTCCACATTACTTATGTAATTAGGAAACAAATGCATGTTAATACAAATTTCTTTATAGGAAAACTTTTAAAACCATGAAAATTTTAGAAGATTGTTTACTTTGATCAATTTCCTTAAACAATAATGTTTCCATAATTGGTTTTTTTTTCTTACCTCTGAGATGTCAATTTTCTTTTCTTTCGAGGAAATCTCTTTCTATTCTATTTGTATTTGAAATTTAAAAGACAGGTGTTGGAAGGCCATAAAAAATATCCTCAATATACATCCCCTTTCTCTTTACACAAATCAAAGATCTTATTGATATGCAGTTGTATCATGTATGTACTATGGTCCTGATTTGGCTTCGTCCTTGGAATTCATGTAAAAGGATGTCTTGGTCTTGCACTTGCCCAAACGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGTTAGTGCTACTGTCTATCCTTACACTACTCTAGATAAGCATCTTAGTACATGCTAATATTAGCATGCTCATCTGGCTGTCTGTTTTAATTATAATCGTTTGCTGTTTGTTTGTTTTGAACTACCAACATCAGTGTCTTTCTTGATTTGTTTTATTCTGAATTTTTATTGACGATTCTATGGTCTTACATGTATCTTCCAAATGTTGAACTTGAAGTGTGATGGTTTCAGGTTTTTAGTTTTTCCTTTTTCCGTTCTTTCTGTGGAACATTTCTGCTATTTCTGTAGCTGACTTTTTGTTTTCTTCTCTCCTAGGGTGCAACACTCTTTTCAAGTGATCTTGAAAGGTATTCTCCTACAACTTGAGAAAACAATGAAGTTTATTATCAGTTTATGATTTCAGTCCAACGTGCATGCAACACTGCCTAGTAGTATCATGAGTTATTAGAACATGGACCTACTTTCTCTCTTCTATTCTATGTTCGATTTTAATATTAAAAGAATTATGTACTTTTCTATATTGTATGAGTGTGACCGTAGTTCTATATCGCTTAGATTATAGATGAGCGAAGATTGTAGATGCATCGATAAGGGCAATAGCTCTATTGTTATATGGACTTTTTGCTAGGGTCCGAAAAATCTACATGGTCTGAACCTAAAATGGGGAAGATCAGGCAAATATGTTTAACTGATTTTTTTCACCCTTCTTTAACTGTACAAGGAAAACTAGCTTTTTGAACATCCTGAAAGCTTGCCATAATAACAATGCTCACCTAAAGTTGTTTCAGCTTCTCTCCAGAGACGTGCGTGCCTTAAACAATTTTATTTAAAAAAGAAAAATCACCACAGTTTTATGGAGAGTCCAGATCAAATAACAGAGCTTTCAAAATTTCTCCATTTCCAGCATGCTGAAATCGATTTACCAATTGTGTTTGTGAGGTGATTGAATAAAACTGGACGATAGTGAATGGTTGTTGTCTTAGTTCTAGAGTCCAAAAGGCATCTTCTATTAATTAAAAAAGAAGGAAAAGCATCTAGAACTCTATAATTTTGTCTAATTGTTCTTTGTATAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATTACATATTATGGGAAAGGAAGAATGCCTGTAAGTTATTATTTGTTAATATTCTTCTATAAGCGGTGAAATATTTATATATATCAATGGTTGATGATGGCTTTCAGGGTTTTGGTGAGAACTGTAAGCCAAGGGGTCAATGCACATTTGGTCCCCGTTTGCAGGAGGAAGAAATTAGGCTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCTAACCCATAGACGGGTATTGATTTTTTGGGTCAGACTATTATTGCCTTGTATACCAAGTACTAATGTATGTTTACTTTGTATTAAATTGAACTCTTACCTGTCAATATTTTCCAAAGTCTCATCTGAATCAATGGCCTCACATATATATATAGATGCCTCATCTATAGCTATCATGACAACTGAAAAGCTAGGATGGACAGTTGCTATCATCCTATTGATAACTAGCAACATTCAAACACTGTAATCATGCATCTTTCTAAAAGCGATATCCATACTGCTATTGCACATGAATTGATCATAAAACAAAGGACAAAAGTAAACTTAATCTCAAATATAACTGAAGTACAGGAATATATATATACACACACATGCCAATTTGAAGAGTAGAATGTATATTTATGATGCACTTTTGAATTGTTCGTCAACATTCTCCTTTGAAGATTAAATTTGTTGGATTGGTTCCTAGAGAAGATGGTTGAAGATTAGGAAAATGATGAAGGAACATTGCATGAACATAATATGAG

mRNA sequence

ATGAATTGGAGCGGAGCACTGTTTGTCCGACCCGCTTATCACTTTGGATTGGACAGCCACAGCCTAATTGGAGTTTGGGGCAGCAGGCACGGCAGCCACAGGCACATCCAAGAGTCCAAGACCCGCCAAAGCGCAGAGAGCCCGCCCGCGTCACGGCGTCAGAGACGAAGGAGATCCAGATGCATCTTCTCTCCAGTTCCGAAGTTGTTAGTCAACCAGGGAAAGCGACGGATTGCAGTTTGTCAAATTCGTACACAAGTTAAGATTCTCAAGACCCTGCCTCCCCCTCTCATTGCGGTGCTTATAGCATTATCTCCCCTCAACAACACCCCAGGATGTCTTGGTCTTGCACTTGCCCAAACGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGGTGCAACACTCTTTTCAAGTGATCTTGAAAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATTACATATTATGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGTAAGCCAAGGGGTCAATGCACATTTGGTCCCCGTTTGCAGGAGGAAGAAATTAGGCTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCTAACCCATAGACGGGTATTGATTTTTTGGGTCAGACTATTATTGCCTTGTATACCAAGTACTAATGTATGTTTACTTTGTATTAAATTGAACTCTTACCTGTCAATATTTTCCAAAGTCTCATCTGAATCAATGGCCTCACATATATATATAGATGCCTCATCTATAGCTATCATGACAACTGAAAAGCTAGGATGGACAGTTGCTATCATCCTATTGATAACTAGCAACATTCAAACACTGTAATCATGCATCTTTCTAAAAGCGATATCCATACTGCTATTGCACATGAATTGATCATAAAACAAAGGACAAAAGTAAACTTAATCTCAAATATAACTGAAGTACAGGAATATATATATACACACACATGCCAATTTGAAGAGTAGAATGTATATTTATGATGCACTTTTGAATTGTTCGTCAACATTCTCCTTTGAAGATTAAATTTGTTGGATTGGTTCCTAGAGAAGATGGTTGAAGATTAGGAAAATGATGAAGGAACATTGCATGAACATAATATGAG

Coding sequence (CDS)

ATGAATTGGAGCGGAGCACTGTTTGTCCGACCCGCTTATCACTTTGGATTGGACAGCCACAGCCTAATTGGAGTTTGGGGCAGCAGGCACGGCAGCCACAGGCACATCCAAGAGTCCAAGACCCGCCAAAGCGCAGAGAGCCCGCCCGCGTCACGGCGTCAGAGACGAAGGAGATCCAGATGCATCTTCTCTCCAGTTCCGAAGTTGTTAGTCAACCAGGGAAAGCGACGGATTGCAGTTTGTCAAATTCGTACACAAGTTAAGATTCTCAAGACCCTGCCTCCCCCTCTCATTGCGGTGCTTATAGCATTATCTCCCCTCAACAACACCCCAGGATGTCTTGGTCTTGCACTTGCCCAAACGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGGTGCAACACTCTTTTCAAGTGATCTTGAAAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATTACATATTATGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGTAAGCCAAGGGGTCAATGCACATTTGGTCCCCGTTTGCAGGAGGAAGAAATTAGGCTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCTAACCCATAG

Protein sequence

MNWSGALFVRPAYHFGLDSHSLIGVWGSRHGSHRHIQESKTRQSAESPPASRRQRRRRSRCIFSPVPKLLVNQGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP

Homology

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BLAST of ClCG01G025800 vs. Swiss-Prot
Match: CYC6_ARATH (Cytochrome c6, chloroplastic OS=Arabidopsis thaliana GN=PETJ PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.4e-51
Identity = 95/131 (72.52%), Postives = 107/131 (81.68%), Query Frame = 1


Query: 89  ILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQP 148
           +LK L PPL AVL+A+SP+   P  LG    QT +I+RG  LFN+ACIGCHD GGNIIQP
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPPESLG----QTLDIQRGATLFNRACIGCHDTGGNIIQP 103

Query: 149 GATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAK 208
           GATLF+ DLERNG D EEEIYR+TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI+LLA+
Sbjct: 104 GATLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAE 163

Query: 209 FVKIQADRGWP 220
           FVK QAD+GWP
Sbjct: 164 FVKFQADQGWP 170

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BLAST of ClCG01G025800 vs. Swiss-Prot
Match: CYC6_SYNP6 (Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petJ PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 5.0e-10
Identity = 35/103 (33.98%), Postives = 52/103 (50.49%), Query Frame = 1


Query: 116 LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYG 175
           +A AQ A++  GG +F+  C  CH GG N++ P  TL  +DL++ G  + E I      G
Sbjct: 19  IAPAQAADLAHGGQVFSANCAACHLGGRNVVNPAKTLQKADLDQYGMASIEAITTQVTNG 78

Query: 176 KGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGW 219
           KG MP FG             +L  ++I  +A +V  Q+++GW
Sbjct: 79  KGAMPAFGS------------KLSADDIADVASYVLDQSEKGW 109

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BLAST of ClCG01G025800 vs. Swiss-Prot
Match: CYC6_SYNE7 (Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942) GN=petJ PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.0e-10
Identity = 35/103 (33.98%), Postives = 52/103 (50.49%), Query Frame = 1


Query: 116 LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYG 175
           +A AQ A++  GG +F+  C  CH GG N++ P  TL  +DL++ G  + E I      G
Sbjct: 19  IAPAQAADLAHGGQVFSANCAACHLGGRNVVNPAKTLQKADLDQYGMASIEAITTQVTNG 78

Query: 176 KGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGW 219
           KG MP FG             +L  ++I  +A +V  Q+++GW
Sbjct: 79  KGAMPAFGS------------KLSADDIADVASYVLDQSEKGW 109

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BLAST of ClCG01G025800 vs. Swiss-Prot
Match: CYC6_THEEB (Cytochrome c6 OS=Thermosynechococcus elongatus (strain BP-1) GN=petJ PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.4e-09
Identity = 44/144 (30.56%), Postives = 64/144 (44.44%), Query Frame = 1


Query: 75  KRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQA 134
           KR I+VC I              IA+L++L+P            A  A++  G  +F+  
Sbjct: 3   KRFISVCAIA-------------IALLVSLTPA-----------ALAADLANGAKVFSGN 62

Query: 135 CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTF 194
           C  CH GGGN++    TL    LE+ G  +E+ I     +GK  MP             F
Sbjct: 63  CAACHMGGGNVVMANKTLKKEALEQFGMYSEDAIIYQVQHGKNAMP------------AF 110

Query: 195 GPRLQEEEIRLLAKFVKIQADRGW 219
             RL +E+I+ +A +V  QA +GW
Sbjct: 123 AGRLTDEQIQDVAAYVLDQAAKGW 110

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BLAST of ClCG01G025800 vs. Swiss-Prot
Match: CYC6_SYNY3 (Cytochrome c6 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=petJ PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-08
Identity = 40/123 (32.52%), Postives = 56/123 (45.53%), Query Frame = 1


Query: 96  PLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSS 155
           P +  L  +  L NT        A  A++  G A+F   C  CH+GG N I P  TL  +
Sbjct: 18  PCLIFLGGIFSLGNT--------ALAADLAHGKAIFAGNCAACHNGGLNAINPSKTLKMA 77

Query: 156 DLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQAD 215
           DLE NG ++   I      G G MPGF      +G      R+ + ++  +A +V  QA+
Sbjct: 78  DLEANGKNSVAAIVAQITNGNGAMPGF------KG------RISDSDMEDVAAYVLDQAE 120

Query: 216 RGW 219
           +GW
Sbjct: 138 KGW 120

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BLAST of ClCG01G025800 vs. TrEMBL
Match: A0A0A0KPD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G538600 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.5e-69
Identity = 132/148 (89.19%), Postives = 136/148 (91.89%), Query Frame = 1


Query: 74  GKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQ 133
           GKRR  VCQIRTQVKILK L PPLIA+L+ LSPLN T GCL   LA+T EIERGGALFNQ
Sbjct: 9   GKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKTSGCL--VLAETIEIERGGALFNQ 68

Query: 134 ACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCT 193
           +CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITY GKGRMPGFGENCKPRGQCT
Sbjct: 69  SCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYDGKGRMPGFGENCKPRGQCT 128

Query: 194 FGPRLQEEEIRLLAKFVKIQADRGWPNP 222
           FGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 129 FGPRLQEEEIRLLAKFVKIQADRGWPNP 154

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BLAST of ClCG01G025800 vs. TrEMBL
Match: D7T9J4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01850 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 6.7e-54
Identity = 106/156 (67.95%), Postives = 126/156 (80.77%), Query Frame = 1


Query: 65  PVPKLLVNQGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEI 124
           PV  ++  +GK    V + + QVK LK L PPL+A ++ALSP+ NTP    ++LAQT +I
Sbjct: 18  PVKGMVGERGKT--PVHEKQKQVKFLKGLAPPLMAAVVALSPICNTP----VSLAQTTDI 77

Query: 125 ERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGE 184
           +RG ALF +ACIGCHD GGNIIQPGATLF  DL+RNG D EEEIYR+TYYGKGRMPGFGE
Sbjct: 78  QRGAALFGRACIGCHDAGGNIIQPGATLFLKDLQRNGVDTEEEIYRVTYYGKGRMPGFGE 137

Query: 185 NCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPN 221
           NC PRGQCTFG RLQEEEI+LLA+FVK+QAD+GWPN
Sbjct: 138 NCTPRGQCTFGARLQEEEIKLLAEFVKLQADQGWPN 167

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BLAST of ClCG01G025800 vs. TrEMBL
Match: A0A061GDA8_THECC (Cytochrome c OS=Theobroma cacao GN=TCM_029387 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.3e-53
Identity = 102/149 (68.46%), Postives = 123/149 (82.55%), Query Frame = 1


Query: 72  NQGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALF 131
           NQG   + + Q+  +VK+ K L PPLIA  +ALSP+ +TP     ALAQT +I+RG  LF
Sbjct: 24  NQGGPPLKLKQVG-RVKLFKNLAPPLIAAFVALSPICSTP-----ALAQTVDIQRGATLF 83

Query: 132 NQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQ 191
            QACIGCHDGGGNIIQPGATLF+ DL+RNG D EEEIYR+TY+GKGRMPGFGE+C PRGQ
Sbjct: 84  RQACIGCHDGGGNIIQPGATLFTKDLQRNGVDTEEEIYRVTYFGKGRMPGFGESCTPRGQ 143

Query: 192 CTFGPRLQEEEIRLLAKFVKIQADRGWPN 221
           CTFGPRL+E+EI+LLA+FVK+QAD+GWPN
Sbjct: 144 CTFGPRLKEDEIKLLAEFVKLQADQGWPN 166

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BLAST of ClCG01G025800 vs. TrEMBL
Match: U5FN68_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s15410g PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 8.2e-52
Identity = 102/166 (61.45%), Postives = 128/166 (77.11%), Query Frame = 1


Query: 59  SRCIFSPVPKLLVN----QGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCL 118
           S C   P   LL+     QG+ +  V   + +VK++K+L  PL+A L+ALSP+ NTP  L
Sbjct: 42  SCCSHGPYNSLLMKGNEKQGESQNPVVLKQKEVKLVKSLALPLMAALVALSPIGNTPVSL 101

Query: 119 GLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYY 178
           G    QT +++RG +LF++ CIGCHD GGNIIQPGATLF+ DL+RNG D EEEIYR+TY+
Sbjct: 102 G----QTLDVQRGASLFSRTCIGCHDAGGNIIQPGATLFTKDLQRNGVDTEEEIYRMTYF 161

Query: 179 GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPN 221
           GKGRMPGFGE+C PRGQCTFGPRLQ+EEI+LLA+FVK QAD+GWPN
Sbjct: 162 GKGRMPGFGESCTPRGQCTFGPRLQDEEIKLLAQFVKSQADQGWPN 203

[Close]

BLAST of ClCG01G025800 vs. TrEMBL
Match: A0A0D2UG51_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G168700 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-51
Identity = 103/161 (63.98%), Postives = 127/161 (78.88%), Query Frame = 1


Query: 64  SPVPKLLVNQGKRRIAVCQIR--TQVKI--LKTLPPPLIAVLIALSPLNNTPGCLGLALA 123
           S VP+ L+ +G    A  +++   QVKI   K + PPL+A  +ALSP+ NTP     A+A
Sbjct: 11  SYVPRCLLVKGNANQAPSKLKHVEQVKIPHFKNMFPPLVAAFVALSPICNTP-----AIA 70

Query: 124 QTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRM 183
           Q+ +I+RG  LF QACIGCHDGGGNIIQPGATLF+ DLERNG   E++IYRITYYGKGRM
Sbjct: 71  QSVDIQRGATLFGQACIGCHDGGGNIIQPGATLFTKDLERNGVVTEDDIYRITYYGKGRM 130

Query: 184 PGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPN 221
           PGFGE+C PRGQCTFGPRL+E+EI+LLA+FVK+QAD+GWPN
Sbjct: 131 PGFGESCTPRGQCTFGPRLKEDEIKLLAEFVKLQADQGWPN 166

[Close]

BLAST of ClCG01G025800 vs. TAIR10
Match: AT5G45040.1 (AT5G45040.1 Cytochrome c)

HSP 1 Score: 203.0 bits (515), Expect = 1.9e-52
Identity = 95/131 (72.52%), Postives = 107/131 (81.68%), Query Frame = 1


Query: 89  ILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQP 148
           +LK L PPL AVL+A+SP+   P  LG    QT +I+RG  LFN+ACIGCHD GGNIIQP
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPPESLG----QTLDIQRGATLFNRACIGCHDTGGNIIQP 103

Query: 149 GATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAK 208
           GATLF+ DLERNG D EEEIYR+TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI+LLA+
Sbjct: 104 GATLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAE 163

Query: 209 FVKIQADRGWP 220
           FVK QAD+GWP
Sbjct: 164 FVKFQADQGWP 170

[Close]

BLAST of ClCG01G025800 vs. NCBI nr
Match: gi|659077886|ref|XP_008439440.1| (PREDICTED: cytochrome c6, chloroplastic [Cucumis melo])

HSP 1 Score: 276.2 bits (705), Expect = 5.1e-71
Identity = 133/148 (89.86%), Postives = 137/148 (92.57%), Query Frame = 1


Query: 74  GKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQ 133
           G RR  VCQIRT VKIL+TL PPLIA+L+ LSPLN TPGCL   LA+T EIERGGALFNQ
Sbjct: 24  GNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKTPGCL--VLAETTEIERGGALFNQ 83

Query: 134 ACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCT 193
           ACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCT
Sbjct: 84  ACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCT 143

Query: 194 FGPRLQEEEIRLLAKFVKIQADRGWPNP 222
           FGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 144 FGPRLQEEEIRLLAKFVKIQADRGWPNP 169

[Close]

BLAST of ClCG01G025800 vs. NCBI nr
Match: gi|449433475|ref|XP_004134523.1| (PREDICTED: cytochrome c6, chloroplastic [Cucumis sativus])

HSP 1 Score: 270.8 bits (691), Expect = 2.1e-69
Identity = 132/148 (89.19%), Postives = 136/148 (91.89%), Query Frame = 1


Query: 74  GKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQ 133
           GKRR  VCQIRTQVKILK L PPLIA+L+ LSPLN T GCL   LA+T EIERGGALFNQ
Sbjct: 25  GKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKTSGCL--VLAETIEIERGGALFNQ 84

Query: 134 ACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCT 193
           +CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITY GKGRMPGFGENCKPRGQCT
Sbjct: 85  SCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYDGKGRMPGFGENCKPRGQCT 144

Query: 194 FGPRLQEEEIRLLAKFVKIQADRGWPNP 222
           FGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 145 FGPRLQEEEIRLLAKFVKIQADRGWPNP 170

[Close]

BLAST of ClCG01G025800 vs. NCBI nr
Match: gi|700194327|gb|KGN49531.1| (hypothetical protein Csa_6G538600 [Cucumis sativus])

HSP 1 Score: 270.8 bits (691), Expect = 2.1e-69
Identity = 132/148 (89.19%), Postives = 136/148 (91.89%), Query Frame = 1


Query: 74  GKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQ 133
           GKRR  VCQIRTQVKILK L PPLIA+L+ LSPLN T GCL   LA+T EIERGGALFNQ
Sbjct: 9   GKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKTSGCL--VLAETIEIERGGALFNQ 68

Query: 134 ACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCT 193
           +CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITY GKGRMPGFGENCKPRGQCT
Sbjct: 69  SCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYDGKGRMPGFGENCKPRGQCT 128

Query: 194 FGPRLQEEEIRLLAKFVKIQADRGWPNP 222
           FGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 129 FGPRLQEEEIRLLAKFVKIQADRGWPNP 154

[Close]

BLAST of ClCG01G025800 vs. NCBI nr
Match: gi|731371253|ref|XP_002277599.3| (PREDICTED: cytochrome c6, chloroplastic [Vitis vinifera])

HSP 1 Score: 218.8 bits (556), Expect = 9.6e-54
Identity = 106/156 (67.95%), Postives = 126/156 (80.77%), Query Frame = 1


Query: 65  PVPKLLVNQGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEI 124
           PV  ++  +GK    V + + QVK LK L PPL+A ++ALSP+ NTP    ++LAQT +I
Sbjct: 18  PVKGMVGERGKT--PVHEKQKQVKFLKGLAPPLMAAVVALSPICNTP----VSLAQTTDI 77

Query: 125 ERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGE 184
           +RG ALF +ACIGCHD GGNIIQPGATLF  DL+RNG D EEEIYR+TYYGKGRMPGFGE
Sbjct: 78  QRGAALFGRACIGCHDAGGNIIQPGATLFLKDLQRNGVDTEEEIYRVTYYGKGRMPGFGE 137

Query: 185 NCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPN 221
           NC PRGQCTFG RLQEEEI+LLA+FVK+QAD+GWPN
Sbjct: 138 NCTPRGQCTFGARLQEEEIKLLAEFVKLQADQGWPN 167

[Close]

BLAST of ClCG01G025800 vs. NCBI nr
Match: gi|590622007|ref|XP_007024929.1| (Cytochrome c [Theobroma cacao])

HSP 1 Score: 216.5 bits (550), Expect = 4.8e-53
Identity = 102/149 (68.46%), Postives = 123/149 (82.55%), Query Frame = 1


Query: 72  NQGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALF 131
           NQG   + + Q+  +VK+ K L PPLIA  +ALSP+ +TP     ALAQT +I+RG  LF
Sbjct: 24  NQGGPPLKLKQVG-RVKLFKNLAPPLIAAFVALSPICSTP-----ALAQTVDIQRGATLF 83

Query: 132 NQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQ 191
            QACIGCHDGGGNIIQPGATLF+ DL+RNG D EEEIYR+TY+GKGRMPGFGE+C PRGQ
Sbjct: 84  RQACIGCHDGGGNIIQPGATLFTKDLQRNGVDTEEEIYRVTYFGKGRMPGFGESCTPRGQ 143

Query: 192 CTFGPRLQEEEIRLLAKFVKIQADRGWPN 221
           CTFGPRL+E+EI+LLA+FVK+QAD+GWPN
Sbjct: 144 CTFGPRLKEDEIKLLAEFVKLQADQGWPN 166

The following BLAST results are available for this feature:

BLAST of ClCG01G025800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CYC6_ARATH	3.4e-51	72.52	Cytochrome c6, chloroplastic OS=Arabidopsis thaliana GN=PETJ PE=1 SV=1	[more]
CYC6_SYNP6	5.0e-10	33.98	Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) ...	[more]
CYC6_SYNE7	5.0e-10	33.98	Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942) GN=petJ PE=3 SV=1	[more]
CYC6_THEEB	9.4e-09	30.56	Cytochrome c6 OS=Thermosynechococcus elongatus (strain BP-1) GN=petJ PE=3 SV=1	[more]
CYC6_SYNY3	2.7e-08	32.52	Cytochrome c6 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=petJ PE=1 SV=1	[more]

BLAST of ClCG01G025800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPD1_CUCSA	1.5e-69	89.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G538600 PE=4 SV=1	[more]
D7T9J4_VITVI	6.7e-54	67.95	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g01850 PE=4 SV=...	[more]
A0A061GDA8_THECC	3.3e-53	68.46	Cytochrome c OS=Theobroma cacao GN=TCM_029387 PE=4 SV=1	[more]
U5FN68_POPTR	8.2e-52	61.45	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s15410g PE=4 SV=1	[more]
A0A0D2UG51_GOSRA	1.8e-51	63.98	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G168700 PE=4 SV=1	[more]

BLAST of ClCG01G025800 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45040.1	1.9e-52	72.52	Cytochrome c	[more]

BLAST of ClCG01G025800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077886\|ref\|XP_008439440.1\|	5.1e-71	89.86	PREDICTED: cytochrome c6, chloroplastic [Cucumis melo]	[more]
gi\|449433475\|ref\|XP_004134523.1\|	2.1e-69	89.19	PREDICTED: cytochrome c6, chloroplastic [Cucumis sativus]	[more]
gi\|700194327\|gb\|KGN49531.1\|	2.1e-69	89.19	hypothetical protein Csa_6G538600 [Cucumis sativus]	[more]
gi\|731371253\|ref\|XP_002277599.3\|	9.6e-54	67.95	PREDICTED: cytochrome c6, chloroplastic [Vitis vinifera]	[more]
gi\|590622007\|ref\|XP_007024929.1\|	4.8e-53	68.46	Cytochrome c [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009056	Cyt_c-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity
GO:0020037	heme binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G025800.1	ClCG01G025800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009056	Cytochrome c-like domain	GENE3D	G3DSA:1.10.760.10		coord: 121..219 score: 8.0
IPR009056	Cytochrome c-like domain	PFAM	PF13442	Cytochrome_CBB3	coord: 123..188 score: 1.4
IPR009056	Cytochrome c-like domain	PROFILE	PS51007	CYTC	coord: 122..214 score: 11
IPR009056	Cytochrome c-like domain	unknown	SSF46626	Cytochrome c	coord: 116..220 score: 4.87
None	No IPR available	PANTHER	PTHR34688	FAMILY NOT NAMED	coord: 71..220 score: 7.1
None	No IPR available	PANTHER	PTHR34688:SF1	CYTOCHROME C6, CHLOROPLASTIC	coord: 71..220 score: 7.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G025800	Csa6G538600	Cucumber (Chinese Long) v2	cuwcgB432
ClCG01G025800	MELO3C007008	Melon (DHL92) v3.5.1	mewcgB515
ClCG01G025800	Cla009895	Watermelon (97103) v1	wcgwmB141
ClCG01G025800	Cla97C01G025970	Watermelon (97103) v2	wcgwmbB089
ClCG01G025800	CSPI06G37530	Wild cucumber (PI 183967)	cpiwcgB453
ClCG01G025800	Cucsa.048900	Cucumber (Gy14) v1	cgywcgB022
ClCG01G025800	CmaCh07G000120	Cucurbita maxima (Rimu)	cmawcgB754
ClCG01G025800	CmoCh07G000160	Cucurbita moschata (Rifu)	cmowcgB755
ClCG01G025800	Lsi01G000170	Bottle gourd (USVL1VR-Ls)	lsiwcgB127
ClCG01G025800	Cp4.1LG19g05390	Cucurbita pepo (Zucchini)	cpewcgB425
ClCG01G025800	CsGy6G036910	Cucumber (Gy14) v2	cgybwcgB399
ClCG01G025800	MELO3C007008.2	Melon (DHL92) v3.6.1	medwcgB510
ClCG01G025800	Carg14925	Silver-seed gourd	carwcgB0707
ClCG01G025800	CsaV3_6G053010	Cucumber (Chinese Long) v3	cucwcgB455

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G025800	Cucurbita maxima (Rimu)	cmawcgB576
ClCG01G025800	Cucurbita moschata (Rifu)	cmowcgB573
ClCG01G025800	Cucurbita pepo (Zucchini)	cpewcgB062
ClCG01G025800	Silver-seed gourd	carwcgB1041