CmoCh06G017410 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G017410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Sarcoplasmic reticulum histidine-rich calcium-binding protein, putative
Location	Cmo_Chr06 : 11935655 .. 11936245 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACAAGGCGTCCCTTCTGTTGAAGAAAATCACTTCCATTTTGGGTGCCATAGCTAAGGCCAAGTCCATGGCCATCAACTCCAAATTCAGCCCCACCAAACCTCGTCTCCTCATGCTCTCCATGCTCAAGACCAAAAAACTTCTCGTCACTTCCCTCTCTAACAAGATCCACACCATTCTCGGCCAACACCACGGCGACTGCGACGACGACGACACCCAAGACAACCACAGCATGGCCATTGTCCTCTATGACGCCGCTGCCGCACAAGCAAGCCAGTATCAATCCAGTGCGAGCTTGGCGATGGCAGCCAAGGCTGAGGAAGAGGATGACAAGTATCCTGACCTGACACACTCTCTGTTTGACGAAGAGGATGACTATGACATCGACGATGCGAAGCTGCAGGCTGCTGGTGGCTCGATTATTGACATGATGAGGAACTCCAAGGAAGAAGGAGAGGAGTTCAAGCTGGAGGAAGAGATCGATGAGGCGGCAGACTTGTTCATAAAGAGGTTCCGGAAACAAATACGCATGCAAAAGCTTGAATCTTTCAAGAGGCTTCAAGAGATGCTGGCAAGAGGAACTTGA

mRNA sequence

ATGAAGAACAAGGCGTCCCTTCTGTTGAAGAAAATCACTTCCATTTTGGGTGCCATAGCTAAGGCCAAGTCCATGGCCATCAACTCCAAATTCAGCCCCACCAAACCTCGTCTCCTCATGCTCTCCATGCTCAAGACCAAAAAACTTCTCGTCACTTCCCTCTCTAACAAGATCCACACCATTCTCGGCCAACACCACGGCGACTGCGACGACGACGACACCCAAGACAACCACAGCATGGCCATTGTCCTCTATGACGCCGCTGCCGCACAAGCAAGCCAGTATCAATCCAGTGCGAGCTTGGCGATGGCAGCCAAGGCTGAGGAAGAGGATGACAAGTATCCTGACCTGACACACTCTCTGTTTGACGAAGAGGATGACTATGACATCGACGATGCGAAGCTGCAGGCTGCTGGTGGCTCGATTATTGACATGATGAGGAACTCCAAGGAAGAAGGAGAGGAGTTCAAGCTGGAGGAAGAGATCGATGAGGCGGCAGACTTGTTCATAAAGAGGTTCCGGAAACAAATACGCATGCAAAAGCTTGAATCTTTCAAGAGGCTTCAAGAGATGCTGGCAAGAGGAACTTGA

Coding sequence (CDS)

ATGAAGAACAAGGCGTCCCTTCTGTTGAAGAAAATCACTTCCATTTTGGGTGCCATAGCTAAGGCCAAGTCCATGGCCATCAACTCCAAATTCAGCCCCACCAAACCTCGTCTCCTCATGCTCTCCATGCTCAAGACCAAAAAACTTCTCGTCACTTCCCTCTCTAACAAGATCCACACCATTCTCGGCCAACACCACGGCGACTGCGACGACGACGACACCCAAGACAACCACAGCATGGCCATTGTCCTCTATGACGCCGCTGCCGCACAAGCAAGCCAGTATCAATCCAGTGCGAGCTTGGCGATGGCAGCCAAGGCTGAGGAAGAGGATGACAAGTATCCTGACCTGACACACTCTCTGTTTGACGAAGAGGATGACTATGACATCGACGATGCGAAGCTGCAGGCTGCTGGTGGCTCGATTATTGACATGATGAGGAACTCCAAGGAAGAAGGAGAGGAGTTCAAGCTGGAGGAAGAGATCGATGAGGCGGCAGACTTGTTCATAAAGAGGTTCCGGAAACAAATACGCATGCAAAAGCTTGAATCTTTCAAGAGGCTTCAAGAGATGCTGGCAAGAGGAACTTGA

Homology

[Close]

BLAST of CmoCh06G017410 vs. TrEMBL
Match: A0A059D8X1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03568 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.3e-42
Identity = 111/196 (56.63%), Postives = 146/196 (74.49%), Query Frame = 1


Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKAS  +K++ S+L ++AK+KS AI SK S  K RL++ S++ ++K+L  S+SNKIH+
Sbjct: 1   MKNKASAFVKRMVSVLTSVAKSKSAAIKSKTSAVKGRLMLFSLMNSRKVLFCSISNKIHS 60

Query: 61  ILGQHHGDCDDDDTQD-NHSMAIVLYDAAAAQASQYQSSASLAMAAKAE-EEDDKYPDLT 120
           +LG  HGD D DD  D + S A+VLY+A A +A    SS ++      E ++DDKYPDL 
Sbjct: 61  LLG--HGDEDSDDEDDVDQSRALVLYEAKANEARPSTSSTAIYGGYGDESDDDDKYPDLR 120

Query: 121 HSLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIR 180
           HSLFDEEDD D+DDA     GGS+ID+++N+KEEG EF LE+EID  ADLFI+RF KQ+R
Sbjct: 121 HSLFDEEDD-DLDDAD---PGGSVIDLVKNAKEEGGEFCLEDEIDHVADLFIRRFHKQMR 180

Query: 181 MQKLESFKRLQEMLAR 195
           +QKLESFKRLQEML R
Sbjct: 181 LQKLESFKRLQEMLGR 190

[Close]

BLAST of CmoCh06G017410 vs. TrEMBL
Match: B9GYU3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s15860g PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.5e-41
Identity = 113/202 (55.94%), Postives = 142/202 (70.30%), Query Frame = 1


Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKAS+ LKKI S+L ++ KAKS+AI SK S  K R +MLS++++K++LV S+SNKIH 
Sbjct: 1   MKNKASVFLKKIMSLLSSVTKAKSLAIKSKTSALKTRAIMLSLMRSKRVLVGSISNKIHR 60

Query: 61  ILGQHHGDCDDDDTQDNHSMAIVLYDAAAAQASQYQSSASLAMAAKAEEE--------DD 120
           IL Q   D +DDD +D  S AIVLY    A A++  SS S  MA   +++        DD
Sbjct: 61  ILNQPEKDSEDDDNED-QSRAIVLY--CNAMANESLSSCS-QMAGTGDDQANNHYYCYDD 120

Query: 121 KYPDLTHSLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKR 180
           KYPDLTHSLFDE+D  D         GGSIID+++NSKE+GE+F LE+EID  ADLFI R
Sbjct: 121 KYPDLTHSLFDEDDFED--------PGGSIIDLVKNSKEDGEDFSLEDEIDHVADLFIMR 180

Query: 181 FRKQIRMQKLESFKRLQEMLAR 195
           F KQ+R+QKLESFKR QEML R
Sbjct: 181 FHKQMRLQKLESFKRNQEMLMR 190

[Close]

BLAST of CmoCh06G017410 vs. TrEMBL
Match: M5XP33_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021881mg PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 107/199 (53.77%), Postives = 147/199 (73.87%), Query Frame = 1


Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKAS+ LK+I ++L  IAK+KS+AI SK S  K RL+M S++K KK+L+ ++S+KIH+
Sbjct: 1   MKNKASVFLKQIMTLLSTIAKSKSLAIKSKTSAVKARLIMFSLMKNKKVLMDTVSHKIHS 60

Query: 61  ILG---QHHGDCDDDDTQDNHSMAIVLYDAAAAQASQYQSSASL--AMAAKAEEEDDKYP 120
           +LG   +H    ++DD   + S A+VL +  A + S+   + S   AMA + E+ED+KYP
Sbjct: 61  LLGHDHRHKQSDEEDDEGSDRSKALVLNNTIANEYSRSAGACSSYNAMAEEDEDEDNKYP 120

Query: 121 DLTHSLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRK 180
           DL HS+FDE++++D  D K    GGS+ID++RNSKEEGE+FKLE+EID+ ADLFI RF K
Sbjct: 121 DLRHSMFDEDENFD--DVK---DGGSVIDIVRNSKEEGEDFKLEDEIDQVADLFINRFHK 180

Query: 181 QIRMQKLESFKRLQEMLAR 195
           QIR+QKL SFKR QEML R
Sbjct: 181 QIRLQKLLSFKRYQEMLER 194

[Close]

BLAST of CmoCh06G017410 vs. TrEMBL
Match: V4SG94_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030001mg PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 112/201 (55.72%), Postives = 142/201 (70.65%), Query Frame = 1


Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKAS  LK++   L ++AK+KSMAI +K S  K RL+M S++K+KK+LV S+S KIH 
Sbjct: 1   MKNKASAFLKQVLCFLTSVAKSKSMAIKNKTSAAKARLIMFSLMKSKKVLVGSISKKIHG 60

Query: 61  ILGQHHGDCDDDDTQD-NHSMAIVLYDAAAAQAS-----QYQSSASLAMAAKAEEEDDKY 120
           +LG H  D D D+  D + S AIV Y+AAAA  +     Q  S  S  +   AE++DDKY
Sbjct: 61  LLG-HPTDKDADNIHDGDQSKAIVPYNAAAAVGALVTEPQSSSICSQLLLQDAEDDDDKY 120

Query: 121 PDLTHSLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFR 180
           PDL HSLFD+E+ ++ +D       GSIIDM+RNSKEEGE+F LEEEID  ADLFIKRF 
Sbjct: 121 PDLRHSLFDDEE-FEFEDE----GNGSIIDMVRNSKEEGEDFSLEEEIDHVADLFIKRFH 180

Query: 181 KQIRMQKLESFKRLQEMLARG 196
           +Q+ +QKL SFKR QEMLARG
Sbjct: 181 RQMHLQKLASFKRFQEMLARG 195

[Close]

BLAST of CmoCh06G017410 vs. TrEMBL
Match: A0A067ERV7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039527mg PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.7e-40
Identity = 116/207 (56.04%), Postives = 143/207 (69.08%), Query Frame = 1


Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKAS  LKK+  +L ++AK+KSMAI +K S  K RL+M S++K+KK+LV S+S KIH 
Sbjct: 1   MKNKASAFLKKVLCLLTSVAKSKSMAIKNKTSAAKARLIMFSLMKSKKVLVGSISKKIHG 60

Query: 61  ILGQHHGDCDDDDTQD-NHSMAIVLYDAAAAQA-------SQYQSSASLAMAAKAEE--- 120
           +LG H  D D D+  D + S AIV Y+AAAA A        Q  S  S  +   AEE   
Sbjct: 61  LLG-HPTDKDTDNIHDGDQSKAIVPYNAAAAAAVGALVTEPQSSSICSQLLLQDAEEKDD 120

Query: 121 -EDDKYPDLTHSLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADL 180
            +DDKYPDL HSLFDEE+ ++ +D       GSIIDM+RNSKEEGE+F LEEEID  ADL
Sbjct: 121 DDDDKYPDLRHSLFDEEE-FEFEDE----GNGSIIDMVRNSKEEGEDFSLEEEIDHVADL 180

Query: 181 FIKRFRKQIRMQKLESFKRLQEMLARG 196
           FIKRF +Q+ +QKL SFKR QEMLARG
Sbjct: 181 FIKRFHRQMHLQKLASFKRFQEMLARG 201

[Close]

BLAST of CmoCh06G017410 vs. TAIR10
Match: AT5G47920.1 (AT5G47920.1 unknown protein)

HSP 1 Score: 160.6 bits (405), Expect = 9.7e-40
Identity = 104/195 (53.33%), Postives = 138/195 (70.77%), Query Frame = 1


Query: 4   KASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHTILG 63
           KA+ L+K I ++L ++AKAKS+AI +K S  K R+LMLS++K KKL   S+SNKIH +LG
Sbjct: 3   KATALMKHIVALLSSMAKAKSIAIKNKTSAFKTRVLMLSLVKHKKLGFRSISNKIHHLLG 62

Query: 64  QHHGDCDDDDTQD-NHSMAIVLYDAAAAQASQYQSSASLAMAAKAEEEDDKYPDLTHSLF 123
             H D DDD+ QD + + AIVLY++ A+  + ++           EEE DKYPDL H+LF
Sbjct: 63  --HADQDDDNDQDQDKNKAIVLYNSKASTMAHHEE------YDVHEEESDKYPDLRHTLF 122

Query: 124 DEEDDYDIDDAKLQAAGGSIIDMMRNSK-EEGEEFKLEEEIDEAADLFIKRFRKQIRMQK 183
           + E+D+   D + +  G S+IDM+R SK EEGE FKLE+EID  ADLFI RF KQ+++QK
Sbjct: 123 EGEEDF--GDLEEEGQGSSVIDMVRTSKEEEGENFKLEDEIDHVADLFISRFHKQMKLQK 182

Query: 184 LESFKRLQEMLARGT 197
           L SFKR QEMLARGT
Sbjct: 183 LLSFKRYQEMLARGT 187

[Close]

BLAST of CmoCh06G017410 vs. TAIR10
Match: AT5G13880.1 (AT5G13880.1 unknown protein)

HSP 1 Score: 89.0 bits (219), Expect = 3.6e-18
Identity = 69/185 (37.30%), Postives = 103/185 (55.68%), Query Frame = 1


Query: 4   KASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHTILG 63
           KAS  +K+I ++L  +AK K+  +  K    K RL++ S+L  + ++V SLS+K+ +   
Sbjct: 3   KASDFVKQIINMLTCLAKDKTKELKRKTRAFKTRLVIFSLLHNRHMVVGSLSHKLKSNQT 62

Query: 64  QHHGDCDDDDTQDNHSMAIVLYDAAAAQASQYQSSASLAMAAKAEEEDD------KYPDL 123
               D D+ D QD H   +V+  +    A      +        EEEDD      KYPDL
Sbjct: 63  SKKIDHDNKDVQDYHDKNMVVVYSQNVNAMSSTPVSPHVQYQYTEEEDDEEGEEEKYPDL 122

Query: 124 THSLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEE-GEEFKLEEEIDEAADLFIKRFRKQ 182
            HSLF+ E              GS+I+M+++SKE+ GEEF+LE+EID+ ADLFI RF +Q
Sbjct: 123 RHSLFEAE--------------GSVIEMVKHSKEDNGEEFRLEDEIDKVADLFITRFHRQ 173

[Close]

BLAST of CmoCh06G017410 vs. NCBI nr
Match: gi|659130413|ref|XP_008465158.1| (PREDICTED: uncharacterized protein LOC103502825 [Cucumis melo])

HSP 1 Score: 295.0 bits (754), Expect = 9.4e-77
Identity = 164/196 (83.67%), Postives = 180/196 (91.84%), Query Frame = 1


Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKAS+LLKKITS+L AIAKAKSMAIN+KFS TK RLLMLSM+K+KK+L+ SLS+KIHT
Sbjct: 1   MKNKASILLKKITSVLSAIAKAKSMAINTKFSATKARLLMLSMVKSKKILLDSLSHKIHT 60

Query: 61  ILGQHHGDCDDDDTQDNHSMAIVLYDAAAAQASQYQSSASLAMAAKAEEEDDKYPDLTHS 120
           ILG  H D  DDD  DNHS AIVLYDAA A +SQYQ+S S+AMAA+ EEEDDKYPDLTHS
Sbjct: 61  ILG--HDDIRDDDDADNHSKAIVLYDAANAHSSQYQASGSVAMAAEVEEEDDKYPDLTHS 120

Query: 121 LFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRMQ 180
           +F+EEDDYD+DDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIR+Q
Sbjct: 121 MFNEEDDYDMDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRLQ 180

Query: 181 KLESFKRLQEMLARGT 197
           KLESFKRLQEMLARGT
Sbjct: 181 KLESFKRLQEMLARGT 194

[Close]

BLAST of CmoCh06G017410 vs. NCBI nr
Match: gi|702278483|ref|XP_010044900.1| (PREDICTED: voltage-dependent calcium channel type D subunit alpha-1 [Eucalyptus grandis])

HSP 1 Score: 180.3 bits (456), Expect = 3.4e-42
Identity = 111/196 (56.63%), Postives = 146/196 (74.49%), Query Frame = 1


Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKAS  +K++ S+L ++AK+KS AI SK S  K RL++ S++ ++K+L  S+SNKIH+
Sbjct: 1   MKNKASAFVKRMVSVLTSVAKSKSAAIKSKTSAVKGRLMLFSLMNSRKVLFCSISNKIHS 60

Query: 61  ILGQHHGDCDDDDTQD-NHSMAIVLYDAAAAQASQYQSSASLAMAAKAE-EEDDKYPDLT 120
           +LG  HGD D DD  D + S A+VLY+A A +A    SS ++      E ++DDKYPDL 
Sbjct: 61  LLG--HGDEDSDDEDDVDQSRALVLYEAKANEARPSTSSTAIYGGYGDESDDDDKYPDLR 120

Query: 121 HSLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIR 180
           HSLFDEEDD D+DDA     GGS+ID+++N+KEEG EF LE+EID  ADLFI+RF KQ+R
Sbjct: 121 HSLFDEEDD-DLDDAD---PGGSVIDLVKNAKEEGGEFCLEDEIDHVADLFIRRFHKQMR 180

Query: 181 MQKLESFKRLQEMLAR 195
           +QKLESFKRLQEML R
Sbjct: 181 LQKLESFKRLQEMLGR 190

[Close]

BLAST of CmoCh06G017410 vs. NCBI nr
Match: gi|645231200|ref|XP_008222286.1| (PREDICTED: uncharacterized protein LOC103322174 [Prunus mume])

HSP 1 Score: 176.0 bits (445), Expect = 6.3e-41
Identity = 107/200 (53.50%), Postives = 146/200 (73.00%), Query Frame = 1


Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKAS+ LK+I ++L +I KAKS+AI SK S  K RL+M S++K KK+L+ ++S+KIH+
Sbjct: 1   MKNKASVFLKQIMTLLSSIVKAKSLAIKSKTSAVKARLIMFSLVKNKKVLMDTVSHKIHS 60

Query: 61  ILGQHH----GDCDDDDTQDNHSMAIVLYDAAAAQASQYQSSASL--AMAAKAEEEDDKY 120
           +LG  H       ++DD   + S A+VLY+    + S+   + S   AMA + E+ED+KY
Sbjct: 61  LLGHDHRHKQSSDEEDDEGSDRSKALVLYNTITNEYSRSAGACSSYNAMAEEDEDEDNKY 120

Query: 121 PDLTHSLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFR 180
           PDL HS+FDE++++D  D K    GGS+ID++RNSKEEGE+FKLE+EID+ ADLFI RF 
Sbjct: 121 PDLRHSMFDEDENFD--DVK---NGGSVIDIVRNSKEEGEDFKLEDEIDQVADLFINRFH 180

Query: 181 KQIRMQKLESFKRLQEMLAR 195
           KQIR+QKL SFKR QEML R
Sbjct: 181 KQIRLQKLLSFKRYQEMLER 195

[Close]

BLAST of CmoCh06G017410 vs. NCBI nr
Match: gi|1009144710|ref|XP_015889948.1| (PREDICTED: nonsense-mediated mRNA decay protein 2-like [Ziziphus jujuba])

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-40
Identity = 108/198 (54.55%), Postives = 137/198 (69.19%), Query Frame = 1


Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNK S L+K+I S+L +IAKAKSMAI SK +  K RL+M S++K KK+L+ SLS K+H 
Sbjct: 1   MKNKVSALVKRIVSVLSSIAKAKSMAIKSKTNAVKARLIMFSLMKNKKVLLGSLSKKVHN 60

Query: 61  ILGQHHGDCDDDDTQDNHSMAIVLYDAAAAQASQYQSSASLAMAAKAE----EEDDKYPD 120
           +L   HGD D+D    +   AI+LY+A     + +QS   L      +    E+D KYPD
Sbjct: 61  LLQGPHGDDDEDVIVGDQRKAIILYNAKPN--ASWQSHTHLLAVDDDDHHHHEDDAKYPD 120

Query: 121 LTHSLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQ 180
           L H LFD++ D D DD +    GGS+IDM+RNSKEEG++FKLE+EID  ADLFI RF KQ
Sbjct: 121 LRHRLFDQDQDDDDDDLQ---EGGSVIDMVRNSKEEGQDFKLEDEIDHVADLFINRFHKQ 180

Query: 181 IRMQKLESFKRLQEMLAR 195
           +RMQKLESFKR QEML R
Sbjct: 181 MRMQKLESFKRFQEMLER 193

[Close]

BLAST of CmoCh06G017410 vs. NCBI nr
Match: gi|224075421|ref|XP_002304626.1| (hypothetical protein POPTR_0003s15860g [Populus trichocarpa])

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-40
Identity = 113/202 (55.94%), Postives = 142/202 (70.30%), Query Frame = 1


Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKAS+ LKKI S+L ++ KAKS+AI SK S  K R +MLS++++K++LV S+SNKIH 
Sbjct: 1   MKNKASVFLKKIMSLLSSVTKAKSLAIKSKTSALKTRAIMLSLMRSKRVLVGSISNKIHR 60

Query: 61  ILGQHHGDCDDDDTQDNHSMAIVLYDAAAAQASQYQSSASLAMAAKAEEE--------DD 120
           IL Q   D +DDD +D  S AIVLY    A A++  SS S  MA   +++        DD
Sbjct: 61  ILNQPEKDSEDDDNED-QSRAIVLY--CNAMANESLSSCS-QMAGTGDDQANNHYYCYDD 120

Query: 121 KYPDLTHSLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKR 180
           KYPDLTHSLFDE+D  D         GGSIID+++NSKE+GE+F LE+EID  ADLFI R
Sbjct: 121 KYPDLTHSLFDEDDFED--------PGGSIIDLVKNSKEDGEDFSLEDEIDHVADLFIMR 180

Query: 181 FRKQIRMQKLESFKRLQEMLAR 195
           F KQ+R+QKLESFKR QEML R
Sbjct: 181 FHKQMRLQKLESFKRNQEMLMR 190

The following BLAST results are available for this feature:

BLAST of CmoCh06G017410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G017410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059D8X1_EUCGR	2.3e-42	56.63	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03568 PE=4 SV=1	[more]
B9GYU3_POPTR	7.5e-41	55.94	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s15860g PE=4 SV=1	[more]
M5XP33_PRUPE	1.3e-40	53.77	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021881mg PE=4 SV=1	[more]
V4SG94_9ROSI	1.3e-40	55.72	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030001mg PE=4 SV=1	[more]
A0A067ERV7_CITSI	1.7e-40	56.04	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039527mg PE=4 SV=1	[more]

BLAST of CmoCh06G017410 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47920.1	9.7e-40	53.33	unknown protein	[more]
AT5G13880.1	3.6e-18	37.30	unknown protein	[more]

BLAST of CmoCh06G017410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130413\|ref\|XP_008465158.1\|	9.4e-77	83.67	PREDICTED: uncharacterized protein LOC103502825 [Cucumis melo]	[more]
gi\|702278483\|ref\|XP_010044900.1\|	3.4e-42	56.63	PREDICTED: voltage-dependent calcium channel type D subunit alpha-1 [Eucalyptus ...	[more]
gi\|645231200\|ref\|XP_008222286.1\|	6.3e-41	53.50	PREDICTED: uncharacterized protein LOC103322174 [Prunus mume]	[more]
gi\|1009144710\|ref\|XP_015889948.1\|	1.1e-40	54.55	PREDICTED: nonsense-mediated mRNA decay protein 2-like [Ziziphus jujuba]	[more]
gi\|224075421\|ref\|XP_002304626.1\|	1.1e-40	55.94	hypothetical protein POPTR_0003s15860g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G017410.1	CmoCh06G017410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 159..194 score: 2.0
None	No IPR available	PANTHER	PTHR33450	FAMILY NOT NAMED	coord: 2..196 score: 3.6
None	No IPR available	PANTHER	PTHR33450:SF3	SUBFAMILY NOT NAMED	coord: 2..196 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G017410	Cla017204	Watermelon (97103) v1	cmowmB785
CmoCh06G017410	MELO3C026747	Melon (DHL92) v3.5.1	cmomeB748
CmoCh06G017410	ClCG10G013010	Watermelon (Charleston Gray)	cmowcgB732
CmoCh06G017410	MELO3C026747.2	Melon (DHL92) v3.6.1	cmomedB850
CmoCh06G017410	Cla97C10G195880	Watermelon (97103) v2	cmowmbB821
CmoCh06G017410	Bhi11G001264	Wax gourd	cmowgoB0989
CmoCh06G017410	Carg23317	Silver-seed gourd	carcmoB0383

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G017410	Cucurbita maxima (Rimu)	cmacmoB270
CmoCh06G017410	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G017410	Cucurbita pepo (Zucchini)	cmocpeB786
CmoCh06G017410	Cucurbita pepo (Zucchini)	cmocpeB796