Carg23317 (gene) Silver-seed gourd

Overview
NameCarg23317
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranscription elongation factor
LocationCucurbita_argyrosperma_scaffold_188 : 315192 .. 315785 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACAAGGCGTCCCTTCTGTTGAAGAAAATCACTTCCATTTTGGGTGCCATAGCTAAGGCCAAGTCCATGGCCATCAACTCCAAATTCAGCCCCACCAAACCTCGTCTCCTCATGCTCTCCATGCTCAAGACCAAAAAACTTCTCGTCACTTCCCTCTCTAACAAGATCCACACCATTCTCGGCCAACACCACGGCGACCGCGACGACGACGACGAAACCCAAGACAACCACAGCATGGCCATTGTCCTCTATGACGCCGCTGCCGCACATGCAAGCCAGTATCAATCCAGTGCGAGCTTGGCGATGGCAGCCAAGGCTGAGGAAGAGGATGACAAGTATCCTGACCTGACACACTCTCTTTTCGACGAAGAGGATGACTATGACATCGACGATGCGAAGCTACAGGCTGCCGGTGGCTCGATTATCGACATGATGAGGAACTCCAAGGAAGAAGGAGAGGAGTTCAAGCTGGAGGAAGAGATCGATGAGGCGGCAGACTTGTTCATAAAGAGGTTCCGGAAACAAATACGCATGCAAAAGCTTGAATCTTTCAAGAGGCTTCAAGAGATGCTGGCAAGAGGAACTTGA

mRNA sequence

ATGAAGAACAAGGCGTCCCTTCTGTTGAAGAAAATCACTTCCATTTTGGGTGCCATAGCTAAGGCCAAGTCCATGGCCATCAACTCCAAATTCAGCCCCACCAAACCTCGTCTCCTCATGCTCTCCATGCTCAAGACCAAAAAACTTCTCGTCACTTCCCTCTCTAACAAGATCCACACCATTCTCGGCCAACACCACGGCGACCGCGACGACGACGACGAAACCCAAGACAACCACAGCATGGCCATTGTCCTCTATGACGCCGCTGCCGCACATGCAAGCCAGTATCAATCCAGTGCGAGCTTGGCGATGGCAGCCAAGGCTGAGGAAGAGGATGACAAGTATCCTGACCTGACACACTCTCTTTTCGACGAAGAGGATGACTATGACATCGACGATGCGAAGCTACAGGCTGCCGGTGGCTCGATTATCGACATGATGAGGAACTCCAAGGAAGAAGGAGAGGAGTTCAAGCTGGAGGAAGAGATCGATGAGGCGGCAGACTTGTTCATAAAGAGGTTCCGGAAACAAATACGCATGCAAAAGCTTGAATCTTTCAAGAGGCTTCAAGAGATGCTGGCAAGAGGAACTTGA

Coding sequence (CDS)

ATGAAGAACAAGGCGTCCCTTCTGTTGAAGAAAATCACTTCCATTTTGGGTGCCATAGCTAAGGCCAAGTCCATGGCCATCAACTCCAAATTCAGCCCCACCAAACCTCGTCTCCTCATGCTCTCCATGCTCAAGACCAAAAAACTTCTCGTCACTTCCCTCTCTAACAAGATCCACACCATTCTCGGCCAACACCACGGCGACCGCGACGACGACGACGAAACCCAAGACAACCACAGCATGGCCATTGTCCTCTATGACGCCGCTGCCGCACATGCAAGCCAGTATCAATCCAGTGCGAGCTTGGCGATGGCAGCCAAGGCTGAGGAAGAGGATGACAAGTATCCTGACCTGACACACTCTCTTTTCGACGAAGAGGATGACTATGACATCGACGATGCGAAGCTACAGGCTGCCGGTGGCTCGATTATCGACATGATGAGGAACTCCAAGGAAGAAGGAGAGGAGTTCAAGCTGGAGGAAGAGATCGATGAGGCGGCAGACTTGTTCATAAAGAGGTTCCGGAAACAAATACGCATGCAAAAGCTTGAATCTTTCAAGAGGCTTCAAGAGATGCTGGCAAGAGGAACTTGA

Protein sequence

MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHTILGQHHGDRDDDDETQDNHSMAIVLYDAAAAHASQYQSSASLAMAAKAEEEDDKYPDLTHSLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRMQKLESFKRLQEMLARGT
Homology
[Close]
BLAST of Carg23317 vs. NCBI nr
Match: XP_022932646.1 (uncharacterized protein LOC111439137 [Cucurbita moschata])

HSP 1 Score: 261.2 bits (666), Expect = 2.9e-66
Identity = 194/197 (98.48%), Postives = 194/197 (98.48%), Query Frame = 0 

Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT
Sbjct: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60

Query: 61  ILGQHHGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPDLTH 120
           ILGQHHGD   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPDLTH
Sbjct: 61  ILGQHHGD-CDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPDLTH 120

Query: 121 SLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRM 180
           SLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRM
Sbjct: 121 SLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRM 180

Query: 181 QKLESFKRLQEMLARGT 198
           QKLESFKRLQEMLARGT
Sbjct: 181 QKLESFKRLQEMLARGT 196

[Close]
BLAST of Carg23317 vs. NCBI nr
Match: XP_023539704.1 (uncharacterized protein LOC111800308 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.4 bits (664), Expect = 5.0e-66
Identity = 195/197 (98.98%), Postives = 195/197 (98.98%), Query Frame = 0 

Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT
Sbjct: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60

Query: 61  ILGQHHGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPDLTH 120
           ILGQHHG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YPDLTH
Sbjct: 61  ILGQHHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPDLTH 120

Query: 121 SLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRM 180
           SLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRM
Sbjct: 121 SLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRM 180

Query: 181 QKLESFKRLQEMLARGT 198
           QKLESFKRLQEMLARGT
Sbjct: 181 QKLESFKRLQEMLARGT 197

[Close]
BLAST of Carg23317 vs. NCBI nr
Match: XP_022972291.1 (uncharacterized protein LOC111470872 [Cucurbita maxima])

HSP 1 Score: 257.3 bits (656), Expect = 4.2e-65
Identity = 183/198 (92.42%), Postives = 183/198 (92.42%), Query Frame = 0 

Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT
Sbjct: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60

Query: 61  ILGQHHGD-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPDLT 120
           ILGQHHGD              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPDLT
Sbjct: 61  ILGQHHGDCDDNDDTQDNHSMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPDLT 120

Query: 121 HSLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIR 180
           HSLFDEE DYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIR
Sbjct: 121 HSLFDEEYDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIR 180

Query: 181 MQKLESFKRLQEMLARGT 198
           MQKLESFKRLQEMLARGT
Sbjct: 181 MQKLESFKRLQEMLARGT 198

[Close]
BLAST of Carg23317 vs. NCBI nr
Match: XP_022158413.1 (uncharacterized protein LOC111024902 [Momordica charantia])

HSP 1 Score: 226.9 bits (577), Expect = 6.1e-56
Identity = 135/197 (68.53%), Postives = 143/197 (72.59%), Query Frame = 0 

Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKAS LLKKITS+   IAKAKSMA+NSKFSPTK RLL+LSMLKTKKL++ SLSNKIHT
Sbjct: 1   MKNKASNLLKKITSVFSVIAKAKSMAVNSKFSPTKARLLVLSMLKTKKLVMDSLSNKIHT 60

Query: 61  ILGQHHGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPDLTH 120
           +LGQH  +                                             KYPDLTH
Sbjct: 61  VLGQHDRN-----------NNDDDRNKAIVLYDHNQYRASRGVVMVAEGEEEDKYPDLTH 120

Query: 121 SLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRM 180
           SLFDEEDDYDIDDAKLQAAGGSIIDMMRNSK EGEEFKLEEEIDEAADLFIKRFRKQIR+
Sbjct: 121 SLFDEEDDYDIDDAKLQAAGGSIIDMMRNSK-EGEEFKLEEEIDEAADLFIKRFRKQIRL 180

Query: 181 QKLESFKRLQEMLARGT 198
           QKLESFKRLQEMLARGT
Sbjct: 181 QKLESFKRLQEMLARGT 185

[Close]
BLAST of Carg23317 vs. NCBI nr
Match: XP_008465158.1 (PREDICTED: uncharacterized protein LOC103502825 [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 1.8e-55
Identity = 132/197 (67.01%), Postives = 144/197 (73.10%), Query Frame = 0 

Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKAS+LLKKITS+L AIAKAKSMAIN+KFS TK RLLMLSM+K+KK+L+ SLS+KIHT
Sbjct: 1   MKNKASILLKKITSVLSAIAKAKSMAINTKFSATKARLLMLSMVKSKKILLDSLSHKIHT 60

Query: 61  ILGQHHGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPDLTH 120
           ILG    D                                             KYPDLTH
Sbjct: 61  ILGH---DDIRDDDDADNHSKAIVLYDAANAHSSQYQASGSVAMAAEVEEEDDKYPDLTH 120

Query: 121 SLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRM 180
           S+F+EEDDYD+DDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIR+
Sbjct: 121 SMFNEEDDYDMDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRL 180

Query: 181 QKLESFKRLQEMLARGT 198
           QKLESFKRLQEMLARGT
Sbjct: 181 QKLESFKRLQEMLARGT 194

[Close]
BLAST of Carg23317 vs. TAIR10
Match: AT5G47920.1 (unknown protein)

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-30
Identity = 103/195 (52.82%), Postives = 128/195 (65.64%), Query Frame = 0 

Query: 4   KASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHTILG 63
           KA+ L+K I ++L ++AKAKS+AI +K S  K R+LMLS++K KKL   S+SNKIH +LG
Sbjct: 3   KATALMKHIVALLSSMAKAKSIAIKNKTSAFKTRVLMLSLVKHKKLGFRSISNKIHHLLG 62

Query: 64  QHHGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPDLTHSLF 123
             H D      XXXXXXXXXXXXXX                         KYPDL H+LF
Sbjct: 63  --HAD------XXXXXXXXXXXXXXIVLYNSKASTMAHHEEYDVHEEESDKYPDLRHTLF 122

Query: 124 DEEDDYDIDDAKLQAAGGSIIDMMRNSK-EEGEEFKLEEEIDEAADLFIKRFRKQIRMQK 183
           + E+D+   D + +  G S+IDM+R SK EEGE FKLE+EID  ADLFI RF KQ+++QK
Sbjct: 123 EGEEDF--GDLEEEGQGSSVIDMVRTSKEEEGENFKLEDEIDHVADLFISRFHKQMKLQK 182

Query: 184 LESFKRLQEMLARGT 198
           L SFKR QEMLARGT
Sbjct: 183 LLSFKRYQEMLARGT 187

[Close]
BLAST of Carg23317 vs. TAIR10
Match: AT5G13880.1 (unknown protein)

HSP 1 Score: 68.6 bits (166), Expect = 5.1e-12
Identity = 67/185 (36.22%), Postives = 98/185 (52.97%), Query Frame = 0 

Query: 4   KASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT--- 63
           KAS  +K+I ++L  +AK K+  +  K    K RL++ S+L  + ++V SLS+K+ +   
Sbjct: 3   KASDFVKQIINMLTCLAKDKTKELKRKTRAFKTRLVIFSLLHNRHMVVGSLSHKLKSNQT 62

Query: 64  --ILGQHHGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPDL 123
              +   + D                                   XXXXXXXXXXKYPDL
Sbjct: 63  SKKIDHDNKDVQDYHDKNMVVVYSQNVNAMSSTPVSPHVQYQYTEXXXXXXXXXXKYPDL 122

Query: 124 THSLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEE-GEEFKLEEEIDEAADLFIKRFRKQ 183
            HSLF+ E              GS+I+M+++SKE+ GEEF+LE+EID+ ADLFI RF +Q
Sbjct: 123 RHSLFEAE--------------GSVIEMVKHSKEDNGEEFRLEDEIDKVADLFITRFHRQ 173

[Close]
BLAST of Carg23317 vs. TrEMBL
Match: tr|A0A1S3CN57|A0A1S3CN57_CUCME (uncharacterized protein LOC103502825 OS=Cucumis melo OX=3656 GN=LOC103502825 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.2e-55
Identity = 132/197 (67.01%), Postives = 144/197 (73.10%), Query Frame = 0 

Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKAS+LLKKITS+L AIAKAKSMAIN+KFS TK RLLMLSM+K+KK+L+ SLS+KIHT
Sbjct: 1   MKNKASILLKKITSVLSAIAKAKSMAINTKFSATKARLLMLSMVKSKKILLDSLSHKIHT 60

Query: 61  ILGQHHGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPDLTH 120
           ILG    D                                             KYPDLTH
Sbjct: 61  ILGH---DDIRDDDDADNHSKAIVLYDAANAHSSQYQASGSVAMAAEVEEEDDKYPDLTH 120

Query: 121 SLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRM 180
           S+F+EEDDYD+DDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIR+
Sbjct: 121 SMFNEEDDYDMDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRL 180

Query: 181 QKLESFKRLQEMLARGT 198
           QKLESFKRLQEMLARGT
Sbjct: 181 QKLESFKRLQEMLARGT 194

[Close]
BLAST of Carg23317 vs. TrEMBL
Match: tr|A0A2C9VF00|A0A2C9VF00_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G099400 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.2e-35
Identity = 98/195 (50.26%), Postives = 121/195 (62.05%), Query Frame = 0 

Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKAS++LKKI S+L  IAKA++MAI SK S  K RL+M S++K+KK+L+ S+SNKIH 
Sbjct: 1   MKNKASVVLKKIVSLLSCIAKARAMAIKSKTSEVKARLIMFSLVKSKKVLLGSISNKIHD 60

Query: 61  ILGQHHGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPDLTH 120
           ILG    D                                             KYPDLTH
Sbjct: 61  ILGHCDRD----------EDESKAIVLYNNGLPEDSQSSFAHLADEIDDGDDDKYPDLTH 120

Query: 121 SLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRM 180
           SLFD+E+D++         GGSIID+++NSKE+GE+FKLE+EID  ADLFI RF KQIR+
Sbjct: 121 SLFDDEEDFN-------DPGGSIIDLVKNSKEKGEDFKLEDEIDHVADLFIMRFHKQIRL 178

Query: 181 QKLESFKRLQEMLAR 196
           QKLESFKR QEMLAR
Sbjct: 181 QKLESFKRFQEMLAR 178

[Close]
BLAST of Carg23317 vs. TrEMBL
Match: tr|B9RG28|B9RG28_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1438750 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.8e-33
Identity = 91/195 (46.67%), Postives = 121/195 (62.05%), Query Frame = 0 

Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MK KAS++LK+I +++ ++AKAKS+AI SK S  K RL+M SM+K+KK+L+ S+S+KIHT
Sbjct: 1   MKKKASVILKQIVALVSSVAKAKSLAIKSKTSAVKARLIMFSMMKSKKVLLGSISDKIHT 60

Query: 61  ILGQHHGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPDLTH 120
           ILGQ   D                                             KYPDL H
Sbjct: 61  ILGQDEKD--------------------RQYENGEEQSKAIVLYNNALADEDDKYPDLRH 120

Query: 121 SLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRM 180
           +LFDEE++++         GGS+ID+++NSK+EGE+F LE+EID  ADLFI RF KQ+R+
Sbjct: 121 TLFDEEEEFN-------DPGGSVIDLVKNSKDEGEDFSLEDEIDHVADLFIMRFHKQMRL 168

Query: 181 QKLESFKRLQEMLAR 196
           QKLESFKR QEMLAR
Sbjct: 181 QKLESFKRFQEMLAR 168

[Close]
BLAST of Carg23317 vs. TrEMBL
Match: tr|M5XP33|M5XP33_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G211600 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 93/199 (46.73%), Postives = 121/199 (60.80%), Query Frame = 0 

Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKAS+ LK+I ++L  IAK+KS+AI SK S  K RL+M S++K KK+L+ ++S+KIH+
Sbjct: 1   MKNKASVFLKQIMTLLSTIAKSKSLAIKSKTSAVKARLIMFSLMKNKKVLMDTVSHKIHS 60

Query: 61  ILGQHH----GDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYP 120
           +LG  H     D                                             KYP
Sbjct: 61  LLGHDHRHKQSDEEDDEGSDRSKALVLNNTIANEYSRSAGACSSYNAMAEEDEDEDNKYP 120

Query: 121 DLTHSLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRK 180
           DL HS+FDE++++  DD K    GGS+ID++RNSKEEGE+FKLE+EID+ ADLFI RF K
Sbjct: 121 DLRHSMFDEDENF--DDVK---DGGSVIDIVRNSKEEGEDFKLEDEIDQVADLFINRFHK 180

Query: 181 QIRMQKLESFKRLQEMLAR 196
           QIR+QKL SFKR QEML R
Sbjct: 181 QIRLQKLLSFKRYQEMLER 194

[Close]
BLAST of Carg23317 vs. TrEMBL
Match: tr|A0A2P4IF46|A0A2P4IF46_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_60168 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 94/195 (48.21%), Postives = 119/195 (61.03%), Query Frame = 0 

Query: 1   MKNKASLLLKKITSILGAIAKAKSMAINSKFSPTKPRLLMLSMLKTKKLLVTSLSNKIHT 60
           MKNKAS+++K+I + L +IAKAKS+AI +K S  K RL+M S+LK KK+++ SLS+KIH 
Sbjct: 1   MKNKASVMIKQIMAALSSIAKAKSIAIKNKTSAFKARLIMFSLLKQKKVIMDSLSHKIHR 60

Query: 61  ILGQHHGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYPDLTH 120
           +LGQ+  +                                         XX  KYPDL H
Sbjct: 61  LLGQNDKENNDEIGEQSMAIVLYNAMRNKSQASSSHTQLIEKAEADDDDXXDDKYPDLRH 120

Query: 121 SLFDEEDDYDIDDAKLQAAGGSIIDMMRNSKEEGEEFKLEEEIDEAADLFIKRFRKQIRM 180
           SLFDEE      D + +  GGSIID++RN+KEEGE F LE+EID  ADLFI RF KQ+RM
Sbjct: 121 SLFDEE------DLEFEDQGGSIIDLVRNAKEEGENFNLEDEIDHVADLFILRFHKQMRM 180

Query: 181 QKLESFKRLQEMLAR 196
           QKL+SFKR QEML R
Sbjct: 181 QKLDSFKRYQEMLER 189

The following BLAST results are available for this feature:
BLAST of Carg23317 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022932646.12.9e-6698.48uncharacterized protein LOC111439137 [Cucurbita moschata][more]
XP_023539704.15.0e-6698.98uncharacterized protein LOC111800308 [Cucurbita pepo subsp. pepo][more]
XP_022972291.14.2e-6592.42uncharacterized protein LOC111470872 [Cucurbita maxima][more]
XP_022158413.16.1e-5668.53uncharacterized protein LOC111024902 [Momordica charantia][more]
XP_008465158.11.8e-5567.01PREDICTED: uncharacterized protein LOC103502825 [Cucumis melo][more]
BLAST of Carg23317 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G47920.11.1e-3052.82unknown protein[more]
AT5G13880.15.1e-1236.22unknown protein[more]
BLAST of Carg23317 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg23317 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CN57|A0A1S3CN57_CUCME1.2e-5567.01uncharacterized protein LOC103502825 OS=Cucumis melo OX=3656 GN=LOC103502825 PE=... [more]
tr|A0A2C9VF00|A0A2C9VF00_MANES5.2e-3550.26Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G099400 PE=4 SV=... [more]
tr|B9RG28|B9RG28_RICCO4.8e-3346.67Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1438750 PE=4 SV=1[more]
tr|M5XP33|M5XP33_PRUPE1.1e-3246.73Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G211600 PE=4 SV=1[more]
tr|A0A2P4IF46|A0A2P4IF46_QUESU1.1e-3248.21Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_60168 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008480DUF761_pln
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23317-RACarg23317-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008480Protein of unknown function DUF761, plantPFAMPF05553DUF761coord: 160..195
e-value: 2.1E-14
score: 52.7
NoneNo IPR availablePANTHERPTHR33450:SF12SUBFAMILY NOT NAMEDcoord: 1..196
NoneNo IPR availablePANTHERPTHR33450FAMILY NOT NAMEDcoord: 1..196

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg23317Cla017204Watermelon (97103) v1carwmB0267
Carg23317MELO3C026747Melon (DHL92) v3.5.1carmeB0277
Carg23317ClCG10G013010Watermelon (Charleston Gray)carwcgB0268
Carg23317CmaCh06G017550Cucurbita maxima (Rimu)carcmaB0385
Carg23317CmoCh06G017410Cucurbita moschata (Rifu)carcmoB0383
Carg23317MELO3C026747.2Melon (DHL92) v3.6.1carmedB0289
Carg23317Cla97C10G195880Watermelon (97103) v2carwmbB0283
Carg23317Bhi11G001264Wax gourdcarwgoB0359
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None