CmoCh06G017010 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G017010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING finger protein, putative
Location	Cmo_Chr06 : 11726751 .. 11727856 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGTGATTATGATGATCTACTTCTCCAATCCCATGGACTCATGAATATGATCACTCAAGCACCACAGCCCCTACAACCAACAACCCTAATCTTTTTCTTAATGGCTCTCTCTTCTTCTTTTCTCCCTTCATACAAACCCCTACTCTTCCATGGCCCCCAAAATTAGCCACCTTTCTCCACCTATTTCCCTCCCTCCATGGCGCCCTCCCCTCACCAAAACATCCCCTTACTTCTCCAACCCCTCGCCTCTCCGGGTCGCCGCCCATGACAATGCTTCCTGCCCATACCCCTCTCTCCCAACTCCGTCCATCCGCCGGCTGCGGCGCCGACCATCTCATGAATGCTGCTCCTCCGCCTATTTCTGAAAATTATTACTATTACTATTCTCATCCTTATCTAATTCCTCTTCCTCCTCCCATGGCGGATGATGACTCCACAACTAACAGTTTTAATGAAGAACCCCCTTTTAATAGAGATGATGGGTGGCTTCAATTAAGTATCGGCCGCGGGAGACCTCCAACAACCTCCAATTTGGTCGAGCTAGATCTATTACCCGGCGGAGGAGGTGACAACCCCGCCGCCACCGCCACCGCCACCGCCACCACCAGCCGGGATTTCTTAACCCCTGAAGCTGCTACGACAGCTCGGTCGGAGACGGGAATGCAGTTGTTTTTTGGAACTCCTACCTCTTCCAACTTTGTACAGCAAGAGATCAATTGGGCATTCAGGCCGATATCGGCTGCGTCGTCGTCTTCTTCCTTTCTACCGGTTGGCGGTCGGCGGAGTTCTTACTTAGGTGGGCCGTTTATCCAATTCCAAAGCTCCGGGGTTCAGGCCGGCGGTGCCGGGCCGAGCTCCGACGTCAGAATCATAAATCCTCCCCGGCGGCCCCATTCTGGTATTTGGTTTACATTAAAAGCCTTAGAAAATCAGTAAGTAAAAAAAATAAAAATAAAAAACAAAAAGATTTCTCCTTAATCTTGTTCTTAATTACATATCATAATCAAATTGTTCTCTAAGCCTTTGAATTTCTGGGTTTTGTTAATGCAGATCAAAACAACCATTCTTGCCTCAGATTTCAAAAAATTATCTCAGAATCAAGTGA

mRNA sequence

GGTGTGATTATGATGATCTACTTCTCCAATCCCATGGACTCATGAATATGATCACTCAAGCACCACAGCCCCTACAACCAACAACCCTAATCTTTTTCTTAATGGCTCTCTCTTCTTCTTTTCTCCCTTCATACAAACCCCTACTCTTCCATGGCCCCCAAAATTAGCCACCTTTCTCCACCTATTTCCCTCCCTCCATGGCGCCCTCCCCTCACCAAAACATCCCCTTACTTCTCCAACCCCTCGCCTCTCCGGGTCGCCGCCCATGACAATGCTTCCTGCCCATACCCCTCTCTCCCAACTCCGTCCATCCGCCGGCTGCGGCGCCGACCATCTCATGAATGCTGCTCCTCCGCCTATTTCTGAAAATTATTACTATTACTATTCTCATCCTTATCTAATTCCTCTTCCTCCTCCCATGGCGGATGATGACTCCACAACTAACAGTTTTAATGAAGAACCCCCTTTTAATAGAGATGATGGGTGGCTTCAATTAAGTATCGGCCGCGGGAGACCTCCAACAACCTCCAATTTGGTCGAGCTAGATCTATTACCCGGCGGAGGAGGTGACAACCCCGCCGCCACCGCCACCGCCACCGCCACCACCAGCCGGGATTTCTTAACCCCTGAAGCTGCTACGACAGCTCGGTCGGAGACGGGAATGCAGTTGTTTTTTGGAACTCCTACCTCTTCCAACTTTGTACAGCAAGAGATCAATTGGGCATTCAGGCCGATATCGGCTGCGTCGTCGTCTTCTTCCTTTCTACCGGTTGGCGGTCGGCGGAGTTCTTACTTAGGTGGGCCGTTTATCCAATTCCAAAGCTCCGGGGTTCAGGCCGGCGGTGCCGGGCCGAGCTCCGACGTCAGAATCATAAATCCTCCCCGGCGGCCCCATTCTGGTATTTGGTTTACATTAAAAGCCTTAGAAAATCAATCAAAACAACCATTCTTGCCTCAGATTTCAAAAAATTATCTCAGAATCAAGTGA

Coding sequence (CDS)

ATGACAATGCTTCCTGCCCATACCCCTCTCTCCCAACTCCGTCCATCCGCCGGCTGCGGCGCCGACCATCTCATGAATGCTGCTCCTCCGCCTATTTCTGAAAATTATTACTATTACTATTCTCATCCTTATCTAATTCCTCTTCCTCCTCCCATGGCGGATGATGACTCCACAACTAACAGTTTTAATGAAGAACCCCCTTTTAATAGAGATGATGGGTGGCTTCAATTAAGTATCGGCCGCGGGAGACCTCCAACAACCTCCAATTTGGTCGAGCTAGATCTATTACCCGGCGGAGGAGGTGACAACCCCGCCGCCACCGCCACCGCCACCGCCACCACCAGCCGGGATTTCTTAACCCCTGAAGCTGCTACGACAGCTCGGTCGGAGACGGGAATGCAGTTGTTTTTTGGAACTCCTACCTCTTCCAACTTTGTACAGCAAGAGATCAATTGGGCATTCAGGCCGATATCGGCTGCGTCGTCGTCTTCTTCCTTTCTACCGGTTGGCGGTCGGCGGAGTTCTTACTTAGGTGGGCCGTTTATCCAATTCCAAAGCTCCGGGGTTCAGGCCGGCGGTGCCGGGCCGAGCTCCGACGTCAGAATCATAAATCCTCCCCGGCGGCCCCATTCTGGTATTTGGTTTACATTAAAAGCCTTAGAAAATCAATCAAAACAACCATTCTTGCCTCAGATTTCAAAAAATTATCTCAGAATCAAGTGA

Homology

[Close]

BLAST of CmoCh06G017010 vs. TrEMBL
Match: A0A0A0KYQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G008840 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 8.6e-63
Identity = 149/264 (56.44%), Postives = 169/264 (64.02%), Query Frame = 1


Query: 20  GADHLMNAAPPPISENYYYYY---SHPYLIPLPPPMADDDSTTNSFN-EEPPFNRDDGWL 79
           GADHLMN   P  ++ YYYYY    +PYLI   PPMA+ DSTTNS N ++ P NRDDGWL
Sbjct: 17  GADHLMNGGAPLCNQYYYYYYLGSDNPYLISPDPPMAEGDSTTNSLNHDQAPSNRDDGWL 76

Query: 80  QLSIGRG-----------------RPPTTSNLVELDLLPGGGGDNPAATATATATTSRDF 139
           QLSIG                       +S LVELDLLPG G D     +   +    DF
Sbjct: 77  QLSIGGSGSGGNVTGLKRDQRESMTSERSSGLVELDLLPGSGRD----ISMNYSRWVSDF 136

Query: 140 LTPEAATTARSETGMQ------LFFGTPTSSNFVQQEINWAFRPIS-------------- 199
            +PE  TT+++ETG +      LFFGT +SSNFVQQEINWAFRP++              
Sbjct: 137 SSPETTTTSKTETGAETGIGLPLFFGTSSSSNFVQQEINWAFRPVTGIGTGVPSSSSPST 196

Query: 200 AASSSSSFLPVGGRRSSYLGGPFIQFQSSGVQ--AGGAGPSSDVRIINPPRRPHSGIWFT 241
           +A SSS  LP+ GRRSSYLG P IQFQS GV      AGPSSDVRIINPPRRPHSGIWFT
Sbjct: 197 SAVSSSYSLPMSGRRSSYLGRPLIQFQSLGVDMATATAGPSSDVRIINPPRRPHSGIWFT 256

[Close]

BLAST of CmoCh06G017010 vs. TrEMBL
Match: A0A061E508_THECC (RING finger protein, putative OS=Theobroma cacao GN=TCM_008415 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.5e-30
Identity = 99/219 (45.21%), Postives = 120/219 (54.79%), Query Frame = 1


Query: 52  MADDDSTTNSFNEEPPFNRD-------DGWLQLSIG------------RGRPPTT-SNLV 111
           MA+D+S TNS NEE   ++D       +GWLQL IG            +G P      L+
Sbjct: 61  MAEDESRTNSLNEERSSSKDNNQEEKDEGWLQLGIGGQATRYDSSKHDQGDPTARRGGLI 120

Query: 112 ELDLLPGGGGDNPAATATATATTSRDFLTPEAATTARSETGMQLFFGTPTSSNFVQQEIN 171
           ELDLLPGG      A   A      +F  P         T +       +SS F Q EIN
Sbjct: 121 ELDLLPGGSSQQ--ARPLAPTFNMPEFRAPRPPVMHSFSTSLFFQHQQGSSSTFPQGEIN 180

Query: 172 WAFRPIS--------AASSSSSFLPVGGRRSSYLGGPFIQFQSSGVQAGG--AGPSSDVR 231
           WAFRPIS        ++SSSSS +P+G    S+   PF       VQ G   AGPSSDVR
Sbjct: 181 WAFRPISQNIAAAPSSSSSSSSLVPLG----SHFARPF------QVQLGMDVAGPSSDVR 240

Query: 232 IINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRIK 241
           II+PPRRPHSGIWF L+A +NQ+K+PFLPQI K+YLRIK
Sbjct: 241 IIDPPRRPHSGIWFMLQASQNQAKEPFLPQIPKSYLRIK 267

[Close]

BLAST of CmoCh06G017010 vs. TrEMBL
Match: B9GMR4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13220g PE=4 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 103/249 (41.37%), Postives = 128/249 (51.41%), Query Frame = 1


Query: 51  PMADDDSTTNSFNEEPPFN-------RDDGWLQLSIGRGRPPTTS--------------- 110
           PMA+D+S TNS N E   +       RD+GWLQLSIG     TT+               
Sbjct: 63  PMAEDESRTNSVNNEAGSSSKDVQEERDEGWLQLSIGGQTTTTTTPTSHESKHYHHHHHH 122

Query: 111 --------------NLVELDLLPGGGGD--NPAATATATATTSRDFLTPE------AATT 170
                          L+ELDLLPG      + A   +       DF TP       AA+ 
Sbjct: 123 QQQQLVLDPTTRRGGLIELDLLPGSISSISHQARPLSTPMFHVPDFRTPPRPVMNIAASH 182

Query: 171 ARSETGMQLFFG---TPTSSNF-VQQEINWAFRPI-----------SAASSSSSFLPVGG 230
           A +     LFF      TSS + + QEINW FRP+           S +SSSSS +P+G 
Sbjct: 183 ATNFGTTSLFFQHHPAATSSTYPLHQEINWPFRPMLHNIATASSSYSPSSSSSSLMPLG- 242

Query: 231 RRSSYLGGPFIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQ 241
              SY   PF    +SG+    AGPSSD R+I+PPRRPHSGIWF L+A +NQ+K+PFLPQ
Sbjct: 243 ---SYFSRPFQV--NSGMDV--AGPSSDFRVIDPPRRPHSGIWFLLQASQNQTKEPFLPQ 302

[Close]

BLAST of CmoCh06G017010 vs. TrEMBL
Match: A0A067JUS7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23112 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.4e-26
Identity = 92/235 (39.15%), Postives = 119/235 (50.64%), Query Frame = 1


Query: 51  PMADDDSTTNSFNEEPPFN-----------------RDDGWLQLSIGRGRPPTTSN---- 110
           PMA+D+S TNS NE    +                 RD+GWLQLSIG       S     
Sbjct: 64  PMAEDESRTNSLNEGAGSSSKDNNNTTTDNNNIQDDRDEGWLQLSIGGHSISHESKQDHQ 123

Query: 111 ---------LVELDLLPGGGGDNPAATATATATTSRDFLTPEAATTARSETGMQLFF--- 170
                    L+ELDLLPG   +     +        +F  P       + +  Q      
Sbjct: 124 VDSTARRGGLIELDLLPGSSSNQARPLSAPIFHVPAEFRIPSRPAIMSNSSFFQHQHQHQ 183

Query: 171 -GTPTSSNFVQQEINWAFR-----------PISAASSSSSFLPVGGRRSSYLGGPFIQFQ 230
            G+ +++    QEINWAFR           P S +SSSS  +P+GG   SY   PF  + 
Sbjct: 184 QGSSSTTYPHHQEINWAFRHMPHIASSSPSPNSQSSSSSLIVPMGG---SYFSRPFQVY- 243

Query: 231 SSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRIK 241
            SG+    AGPSSD R+I+PPRRPHSGIWF L+A +NQ+++PFLPQISK+YLRIK
Sbjct: 244 -SGIDV--AGPSSDFRVIDPPRRPHSGIWFVLQASQNQAQEPFLPQISKSYLRIK 291

[Close]

BLAST of CmoCh06G017010 vs. TrEMBL
Match: V4TFH3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033818mg PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.4e-26
Identity = 106/259 (40.93%), Postives = 123/259 (47.49%), Query Frame = 1


Query: 49  PPPMADDDSTTNSFNE--------EPPFNRDDGWLQLSIG-------------------- 108
           P PMA+D+S TNS +E        +    RD+GWLQLSIG                    
Sbjct: 81  PIPMAEDESRTNSLSEAEAGSSSKDNQEERDEGWLQLSIGSHTKTSHGLKHHDDEVEVDP 140

Query: 109 ---RGRPPTTSNLVELDLLPGGGGDNPAATA-----------TATATTSRDFLTPEAAT- 168
              RGR      L+ELDLLPGGG    A+                    R  L   AA  
Sbjct: 141 TARRGRG--RGGLIELDLLPGGGSSQEASALLGTASTAFHHHAPEFRGQRPLLMNMAAAA 200

Query: 169 --TARSETGMQLFF-----GTPTSSNFV------QQEINWAFRPI-----------SAAS 228
             T  S +   LFF     G   SS+F        QEINWAFRPI           S++S
Sbjct: 201 GATTSSFSSSSLFFQQQQQGGGGSSSFSTFPHYHHQEINWAFRPIPIPQNIALASSSSSS 260

Query: 229 SSSSFLPVGGRRSSYLGGPFIQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALE 241
           SSSS +P G    SY   PF       V    AGPSSD RII+PPRRPHSGIWF L A +
Sbjct: 261 SSSSLMPFG----SYFARPFQVHTGLDV----AGPSSDFRIIDPPRRPHSGIWFMLLASQ 320

[Close]

BLAST of CmoCh06G017010 vs. TAIR10
Match: AT5G13250.1 (AT5G13250.1 RING finger protein)

HSP 1 Score: 81.3 bits (199), Expect = 9.2e-16
Identity = 76/230 (33.04%), Postives = 102/230 (44.35%), Query Frame = 1


Query: 54  DDDSTTNSFNE------EPPFNRDDGWLQLSIGRGRP--------------PTT--SNLV 113
           D++S  N+ N       E    R  GWL+LS+G                  PT    + +
Sbjct: 95  DNNSNNNNINNNNNNEAEDHEMRQQGWLRLSLGHEEDVKPDLDHRQQHQTDPTARRDSFL 154

Query: 114 ELDLLPGGGGDNPAATATATA-------------------TTSRDFLTPEAATTARSETG 173
           EL+L  GG           ++                   T  +D + P AA        
Sbjct: 155 ELNLSSGGSNREEEVGLPLSSLFHHQHQAGGMMINPLMFHTRPQDMIGPWAAAA------ 214

Query: 174 MQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYLGGPFIQFQSSGVQA- 233
               F TP    FV Q +       S++SS S  +P+ G+   Y G    Q Q  G    
Sbjct: 215 ----FRTP----FVPQNLTQP----SSSSSGSLMMPLMGQ---YFGRSSFQPQLIGNDNP 274

Query: 234 -GGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRIK 241
            G AGPSS +R+I+PPRRPHSGIWF L+A +NQ+ +PFLPQI K+YLRIK
Sbjct: 275 DGVAGPSSSLRVIDPPRRPHSGIWFLLQASQNQTVEPFLPQIPKSYLRIK 303

[Close]

BLAST of CmoCh06G017010 vs. TAIR10
Match: AT1G28080.1 (AT1G28080.1 RING finger protein)

HSP 1 Score: 72.8 bits (177), Expect = 3.3e-13
Identity = 72/239 (30.13%), Postives = 106/239 (44.35%), Query Frame = 1


Query: 29  PPPISENYYYYYSHPYLIPLPPPMADDDSTTNSFNEEPPFNRDDGWLQLSIGRGRPPTTS 88
           P P S +YY   S P       P  D   + N  +     N+D  WL+L IG       S
Sbjct: 45  PAPGSTDYYNISSSPVKDDGTAPKNDVVCSINVDD-----NKDKSWLRLGIGPEENTDGS 104

Query: 89  NLVELDLLPGGGGDNPAA-----TATATATTSR----------------DFLTPEAATTA 148
             ++      G G   +      ++++TA +S                   LT    +  
Sbjct: 105 YKLQRCCSKNGSGRENSLELSLFSSSSTAVSSSIDHLPTQPLQLPYHHDQLLTMRGPSLV 164

Query: 149 ------RSETGMQLFFGTPTSSNFVQQEINWAFRPISAASSSSSFLPVGGRRSSYLGGPF 208
                 + +T +   F  P+S  ++ Q +   FRP     SS S   V    S       
Sbjct: 165 YNHQLMKPQTLLNRGFSFPSSKPWIPQYMA-PFRP-----SSLSDRDVTNNNSLS----- 224

Query: 209 IQFQSSGVQAGGAGPSSDVRIINPPRRPHSGIWFTLKALENQSKQPFLPQISKNYLRIK 241
              +S  V  GGAGPSS+ R+++PPRRPHSG+WF L+A + Q ++PFLPQ++K+YLRIK
Sbjct: 225 ---RSCCVDEGGAGPSSEFRVLDPPRRPHSGLWFLLQASQFQEREPFLPQVNKSYLRIK 264

[Close]

BLAST of CmoCh06G017010 vs. NCBI nr
Match: gi|659108297|ref|XP_008454123.1| (PREDICTED: uncharacterized protein LOC103494623 isoform X1 [Cucumis melo])

HSP 1 Score: 254.6 bits (649), Expect = 1.7e-64
Identity = 157/288 (54.51%), Postives = 180/288 (62.50%), Query Frame = 1


Query: 1   MTMLPAHTPLSQLRPSAGCGADHLMNAAPPPISENYYYYY--------SHPYLIPLPPPM 60
           MTM+ A    S+ +     GADHLMN   P  ++ YYYYY        S+PYLI L PPM
Sbjct: 1   MTMVAALNHFSKHQHG---GADHLMNGGAPLCNQYYYYYYYYYNYLGSSNPYLISLDPPM 60

Query: 61  ADDDSTTNSFN-EEPPFNRDDGWLQLSIGRG-----------------RPPTTSNLVELD 120
           A+DDSTTNS N ++ P N DDGWLQLSIG                    P  +S LVELD
Sbjct: 61  AEDDSTTNSLNHDQAPSNTDDGWLQLSIGGSGGSGNVTGLKHDERESMTPGRSSGLVELD 120

Query: 121 LLPGGGGDNPAATATATATTSRDFLTPEAATTARSETGMQ------LFFGTPTSSNFVQQ 180
           LLPGGG D     +   +    DF +PE  TT+++ETG +      LFFGT +SSNFVQQ
Sbjct: 121 LLPGGGRD----ISMNYSRWVSDFSSPETTTTSKTETGAEIGIGLPLFFGTSSSSNFVQQ 180

Query: 181 EINWAFRPIS--------------AASSSSSFLPVGGRRSSYLGGPFIQFQSSGVQAGGA 240
           EINWAFRP++              +A SSS  LP+ GRRSSYLG P IQ QS GV    A
Sbjct: 181 EINWAFRPVAGIGTGVPSSSSPSTSAVSSSYSLPISGRRSSYLGRPLIQLQSVGVDTATA 240

[Close]

BLAST of CmoCh06G017010 vs. NCBI nr
Match: gi|659108301|ref|XP_008454125.1| (PREDICTED: uncharacterized protein LOC103494623 isoform X3 [Cucumis melo])

HSP 1 Score: 253.1 bits (645), Expect = 5.0e-64
Identity = 156/287 (54.36%), Postives = 179/287 (62.37%), Query Frame = 1


Query: 1   MTMLPAHTPLSQLRPSAGCGADHLMNAAPPPISENYYYYY--------SHPYLIPLPPPM 60
           MTM+ A    S+ +     GADHLMN   P  ++ YYYYY        S+PYLI L PPM
Sbjct: 1   MTMVAALNHFSKHQHG---GADHLMNGGAPLCNQYYYYYYYYYNYLGSSNPYLISLDPPM 60

Query: 61  ADDDSTTNSFN-EEPPFNRDDGWLQLSIGRG-----------------RPPTTSNLVELD 120
           A+DDSTTNS N ++ P N DDGWLQLSIG                    P  +S LVELD
Sbjct: 61  AEDDSTTNSLNHDQAPSNTDDGWLQLSIGGSGGSGNVTGLKHDERESMTPGRSSGLVELD 120

Query: 121 LLPGGGGDNPAATATATATTSRDFLTPEAATTARSETGMQ------LFFGTPTSSNFVQQ 180
           LLPGGG D     +   +    DF +PE  TT+++ETG +      LFFGT +SSNFVQQ
Sbjct: 121 LLPGGGRD----ISMNYSRWVSDFSSPETTTTSKTETGAEIGIGLPLFFGTSSSSNFVQQ 180

Query: 181 EINWAFRPIS--------------AASSSSSFLPVGGRRSSYLGGPFIQFQSSGVQAGGA 240
           EINWAFRP++              +A SSS  LP+ GRRSSYLG P IQ QS GV    A
Sbjct: 181 EINWAFRPVAGIGTGVPSSSSPSTSAVSSSYSLPISGRRSSYLGRPLIQLQSVGVDTATA 240

[Close]

BLAST of CmoCh06G017010 vs. NCBI nr
Match: gi|778689783|ref|XP_004152316.2| (PREDICTED: uncharacterized protein LOC101223230 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 1.2e-62
Identity = 149/264 (56.44%), Postives = 169/264 (64.02%), Query Frame = 1


Query: 20  GADHLMNAAPPPISENYYYYY---SHPYLIPLPPPMADDDSTTNSFN-EEPPFNRDDGWL 79
           GADHLMN   P  ++ YYYYY    +PYLI   PPMA+ DSTTNS N ++ P NRDDGWL
Sbjct: 17  GADHLMNGGAPLCNQYYYYYYLGSDNPYLISPDPPMAEGDSTTNSLNHDQAPSNRDDGWL 76

Query: 80  QLSIGRG-----------------RPPTTSNLVELDLLPGGGGDNPAATATATATTSRDF 139
           QLSIG                       +S LVELDLLPG G D     +   +    DF
Sbjct: 77  QLSIGGSGSGGNVTGLKRDQRESMTSERSSGLVELDLLPGSGRD----ISMNYSRWVSDF 136

Query: 140 LTPEAATTARSETGMQ------LFFGTPTSSNFVQQEINWAFRPIS-------------- 199
            +PE  TT+++ETG +      LFFGT +SSNFVQQEINWAFRP++              
Sbjct: 137 SSPETTTTSKTETGAETGIGLPLFFGTSSSSNFVQQEINWAFRPVTGIGTGVPSSSSPST 196

Query: 200 AASSSSSFLPVGGRRSSYLGGPFIQFQSSGVQ--AGGAGPSSDVRIINPPRRPHSGIWFT 241
           +A SSS  LP+ GRRSSYLG P IQFQS GV      AGPSSDVRIINPPRRPHSGIWFT
Sbjct: 197 SAVSSSYSLPMSGRRSSYLGRPLIQFQSLGVDMATATAGPSSDVRIINPPRRPHSGIWFT 256

[Close]

BLAST of CmoCh06G017010 vs. NCBI nr
Match: gi|700197823|gb|KGN52981.1| (hypothetical protein Csa_4G008840 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 1.2e-62
Identity = 149/264 (56.44%), Postives = 169/264 (64.02%), Query Frame = 1


Query: 20  GADHLMNAAPPPISENYYYYY---SHPYLIPLPPPMADDDSTTNSFN-EEPPFNRDDGWL 79
           GADHLMN   P  ++ YYYYY    +PYLI   PPMA+ DSTTNS N ++ P NRDDGWL
Sbjct: 17  GADHLMNGGAPLCNQYYYYYYLGSDNPYLISPDPPMAEGDSTTNSLNHDQAPSNRDDGWL 76

Query: 80  QLSIGRG-----------------RPPTTSNLVELDLLPGGGGDNPAATATATATTSRDF 139
           QLSIG                       +S LVELDLLPG G D     +   +    DF
Sbjct: 77  QLSIGGSGSGGNVTGLKRDQRESMTSERSSGLVELDLLPGSGRD----ISMNYSRWVSDF 136

Query: 140 LTPEAATTARSETGMQ------LFFGTPTSSNFVQQEINWAFRPIS-------------- 199
            +PE  TT+++ETG +      LFFGT +SSNFVQQEINWAFRP++              
Sbjct: 137 SSPETTTTSKTETGAETGIGLPLFFGTSSSSNFVQQEINWAFRPVTGIGTGVPSSSSPST 196

Query: 200 AASSSSSFLPVGGRRSSYLGGPFIQFQSSGVQ--AGGAGPSSDVRIINPPRRPHSGIWFT 241
           +A SSS  LP+ GRRSSYLG P IQFQS GV      AGPSSDVRIINPPRRPHSGIWFT
Sbjct: 197 SAVSSSYSLPMSGRRSSYLGRPLIQFQSLGVDMATATAGPSSDVRIINPPRRPHSGIWFT 256

[Close]

BLAST of CmoCh06G017010 vs. NCBI nr
Match: gi|659108299|ref|XP_008454124.1| (PREDICTED: probable E3 ubiquitin protein ligase DRIPH isoform X2 [Cucumis melo])

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 119/209 (56.94%), Postives = 133/209 (63.64%), Query Frame = 1


Query: 71  DDGWLQLSIGRG-----------------RPPTTSNLVELDLLPGGGGDNPAATATATAT 130
           DDGWLQLSIG                    P  +S LVELDLLPGGG D     +   + 
Sbjct: 24  DDGWLQLSIGGSGGSGNVTGLKHDERESMTPGRSSGLVELDLLPGGGRD----ISMNYSR 83

Query: 131 TSRDFLTPEAATTARSETGMQ------LFFGTPTSSNFVQQEINWAFRPIS--------- 190
              DF +PE  TT+++ETG +      LFFGT +SSNFVQQEINWAFRP++         
Sbjct: 84  WVSDFSSPETTTTSKTETGAEIGIGLPLFFGTSSSSNFVQQEINWAFRPVAGIGTGVPSS 143

Query: 191 -----AASSSSSFLPVGGRRSSYLGGPFIQFQSSGVQAGGA--GPSSDVRIINPPRRPHS 241
                +A SSS  LP+ GRRSSYLG P IQ QS GV    A  GPSSDVRIINPPRRPHS
Sbjct: 144 SSPSTSAVSSSYSLPISGRRSSYLGRPLIQLQSVGVDTATATAGPSSDVRIINPPRRPHS 203

The following BLAST results are available for this feature:

BLAST of CmoCh06G017010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G017010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYQ8_CUCSA	8.6e-63	56.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G008840 PE=4 SV=1	[more]
A0A061E508_THECC	2.5e-30	45.21	RING finger protein, putative OS=Theobroma cacao GN=TCM_008415 PE=4 SV=1	[more]
B9GMR4_POPTR	2.6e-27	41.37	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13220g PE=4 SV=2	[more]
A0A067JUS7_JATCU	6.4e-26	39.15	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23112 PE=4 SV=1	[more]
V4TFH3_9ROSI	6.4e-26	40.93	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033818mg PE=4 SV=1	[more]

BLAST of CmoCh06G017010 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13250.1	9.2e-16	33.04	RING finger protein	[more]
AT1G28080.1	3.3e-13	30.13	RING finger protein	[more]

BLAST of CmoCh06G017010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108297\|ref\|XP_008454123.1\|	1.7e-64	54.51	PREDICTED: uncharacterized protein LOC103494623 isoform X1 [Cucumis melo]	[more]
gi\|659108301\|ref\|XP_008454125.1\|	5.0e-64	54.36	PREDICTED: uncharacterized protein LOC103494623 isoform X3 [Cucumis melo]	[more]
gi\|778689783\|ref\|XP_004152316.2\|	1.2e-62	56.44	PREDICTED: uncharacterized protein LOC101223230 [Cucumis sativus]	[more]
gi\|700197823\|gb\|KGN52981.1\|	1.2e-62	56.44	hypothetical protein Csa_4G008840 [Cucumis sativus]	[more]
gi\|659108299\|ref\|XP_008454124.1\|	1.9e-47	56.94	PREDICTED: probable E3 ubiquitin protein ligase DRIPH isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G017010.1	CmoCh06G017010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10825	RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT	coord: 69..240 score: 1.8
None	No IPR available	PANTHER	PTHR10825:SF23	RING FINGER PROTEIN	coord: 69..240 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G017010	Cucsa.095630	Cucumber (Gy14) v1	cgycmoB0199
CmoCh06G017010	CmaCh14G014060	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G017010	CmaCh06G017090	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G017010	Cla012787	Watermelon (97103) v1	cmowmB792
CmoCh06G017010	Csa4G008840	Cucumber (Chinese Long) v2	cmocuB823
CmoCh06G017010	MELO3C017803	Melon (DHL92) v3.5.1	cmomeB761
CmoCh06G017010	ClCG07G011810	Watermelon (Charleston Gray)	cmowcgB748
CmoCh06G017010	CSPI04G02490	Wild cucumber (PI 183967)	cmocpiB833
CmoCh06G017010	Lsi07G003740	Bottle gourd (USVL1VR-Ls)	cmolsiB764
CmoCh06G017010	Cp4.1LG03g13190	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G017010	Cp4.1LG08g06320	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G017010	MELO3C017803.2	Melon (DHL92) v3.6.1	cmomedB865
CmoCh06G017010	CsaV3_4G002390	Cucumber (Chinese Long) v3	cmocucB0971
CmoCh06G017010	Cla97C07G138520	Watermelon (97103) v2	cmowmbB839
CmoCh06G017010	Bhi01G002902	Wax gourd	cmowgoB1011
CmoCh06G017010	CsGy4G002360	Cucumber (Gy14) v2	cgybcmoB535
CmoCh06G017010	Carg15427	Silver-seed gourd	carcmoB0947
CmoCh06G017010	Carg06559	Silver-seed gourd	carcmoB0167

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G017010	CmoCh14G014430	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G017010	Wax gourd	cmowgoB1015