CmoCh06G015680 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G015680
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	ER membrane protein complex subunit 6
Location	Cmo_Chr06 : 11042625 .. 11047194 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAACCCAGAAATTATTTTGTAGGCTAACGGGAGAGCTCAACTCGACAAGAACAAGACTCACAGCTGCCGCTGTTCGTAGACAAAGCCTTACCTTCCTCCCCTTGGATCGATCGCAATCAACTGGTAATTTACTGTTATTATTCTTCTGAAATTCAGATCATACAAACAATCCGCTACTGCATTTTGGTACTTTTCTCTCTGTTTCATAGATTTGGATCCATTAGTTGCAGAAGATCCGGTAGGTTTTCTGTTGCTTTTCACTCATCGTGTTGTCTTTCAATTGCCGAGAAGATTCATGTCTAAATTTATTATGGTTTTTCAATTTCCTGGCATTTTTGAACTTCAGATCAGACGCCGTTCGAAGCTATGGCTGGATATTCCTCCAATGCTTCCGAGAAGAAATCGTCTGACGCGGTCGACGATATACCGATCTTGAATGCTGAAAATTTGCAAAACAACTTGAAGATTATATACTACAGGTTTTTTGATGCATCAACTAACTTTACTTGTTTGCAAAATCGTCTGACCGTAGTTGACTACTATGAATCTTTATAGTTAGAATCCTTCATTGATAGGCCTCTTCTTTCCCAAATCTTTGAGAAGGATTGTTTGTTTCTTTTTAATTAGCAGCTTATGTAACTGTAAATTGAATTGGCTGACCTAAAATTTCAATGGGCCCTGATCACTGTGCGACGGAGACTGATTCAATTCAATTTCTCAGGAGTGTCTGCATTTAAATTGAGTTGCTACCGAAACGGAAAAGATGATCATTATCCTCTTATAATTCTTTTGAGTTTTGTGAACTAGATTGTAAATTTCGTATCATCTTTTGCAGCCGGACGTTTTTGTCTATTATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTAGCCTGACTGGATTTATATTCTATTTCCTAGTCATGGCAATTACTTCAATTGGACTTGCAGCTAAGGCTGGATTCTCCTTTCATTCGTATTTTGAAAGCTGGAACCAGATTCTACTTGATGGCTTTCTGAGTGGCCTTATGGTATGCATTCTCTGCTCTTATTTTTTTAGATTGGAAAAAAGTTAGAAGACACAATAGAGGAGGAAATAAGTGAATTAGATCAATTTGTTTACTTCAAACTGACCTCTGTTGAATTCTGTCTTAAATGTATGAATATTCAGATTTAATGGTTCTAGGTTTTTTAAGTTAGAAGCCCTTTCATGTTAGTTGCATACGTCTGTTCTAGATTGTGAAGAAATTAGTTGCATACCTTTTAGGGTGATTTCTTATTCTGGTTAGGCTTTTATACCTTGCTGATTTTTGTAAAATTTTCTCATTTCCTCTTAAGGAAAATAATGGAAAATGCAATTCAAATGAGGGTTTATTCGGTGAGATTGTAATTGAAGGATATTTTGAATTAGAGATGCCTTGTTAAACAAAGAGTTCAAATCTAAATAGATAGAAAAAGGGATTACAATTTGAGGTCGTTTGATCATACTGATGGGTTAAGGATATAAAAATAGAGGAACAAGTTGATTTCAGGAGACTATCAATATGGGAAGTGGAAACGTTAAGGGATTTAACTTCTTTTCCTATTCACTGTACACCTCCAATTATCCAATTCCTACAGTGAACCTTGAATGGCCTGAAAGACTGAGTTGGATATAACTGGAAAAAAATAGGACTAAATCCCGGAGCTCCCAAAATCCAATGGGCGTTTCTTGGCTTTGAATCAAGATTATGGCCTACTAAACAATGAATGATTAGATGGAGGTTTTCTAGGAATTGAAATTCTGTGGTAGGGGGTTGTTAACGGATGCCTCTACTTTCTTAGAACTCAAAGGGCACAATTGTACGACCCATAGAATAGATAATGGTATGAAATTCTTGAGTATTTGATCTGACAACCTCGCTGGAAAACAAGACCTTTAGAACTAAAATATCCAATGTGAGATCCCACATCGGTTGGAGAGGGAATGAAACATTTCTTATATATAAGGGTGTGGAAACCTCTCATTAGTAGACACATTTTAAAAACCTTGAGAGGAAGTCCGAAAGGGAAAGCCAAAAGAGGATAGTATATGCTAGCGGTGAGTTTGAGATGTTACATCCAAGAACCCCAAAACGATAAGCAATCAACCTAAGGGTAAGTTTCGAATCGGATTACCTTGATGATCAAGATTAAGAGTAAGGAAAACTTGTTTCTAAACTCGTGATTCATCACGAATCACTCCACAAGATAGCTTGATCAAGGCTATTTGAATGACTATAGCATGCAAATCTAAACACCAGAAATGCAAAGGAACAAGCTCATGGCTTAAGAAGCATAACATCCGACTTTCATTTTAATCTCCAAAATCTTCATATTAAAGGAGTAACTTGAATGACTATTTATAGCCTAAAAAATAAACCTTAGAGTAACCTATGGTCATTGTAATTTTCTTGTCCATAAATACCATAATGGCCCCTAGCTAACTATAACTTATAACCTTAAAAATAATTCTCTAAAATGTAGAATATTGTCAACAAATTCTGGGACTTGAAGATTGGTAGAAATTTGAAAGATATTGAAGCAACAAAATGGGTTGAATTAAGCCTTGACCTTGCCCCAGTGGTATTGTCGAACAAAGTAAATTTACTAACTTGGCTCTCTAGTGTTGATGGGGTCTTCTCTACAAAATTCTTGATCATGAACATGGGGAAAATGTAGAAGAAAGGACATCACCCTGAAAAGGTGAGGTTCTTTAATTGGAAAATAATGCATAACACAAGCAAAAGTCTTAAAAAAAAGAATGTCTTACGTTACTCTTTCTCCAAAGCATTATGCAAGAAGGGAAACGAATCACAAAGTCACTTATTTATGTTATGTACATGCGCTCAGAATTTCTGGACGACGATTCTTAATATATTCGAATGATATCTCACATTTCCTAAGGAGGTAAAGGGTCTATTGGACATGGCCTTAACATACCACCCATTCAAGAATGCAAAAGCCCTACTATGGAAAAACCTCATCATGGCTTTCTTTTGGAATCTGTGGAAAGAAAGAAATAAAAAAATAAAAAAATATTTGTGGAAAAAACACATACTTATACAAAACTCTTCGACAATGTTGTTTACCAAGCTATATCTTGGTGTAAGCTCTTTAATATTTTTACTTCCTATAGTTATACCTACCTCACTGTAATTTGTGAAGGTCTTTTGTAATCATCATGGATATTATATCTCCTTTATAAATTTCTATTATCAATGAGATTGCCTCTTATAAAAAAAAAAAAAAAAAAACTCTAAAAAGTAAAAAATACAATAAACCTCCTTAAATCCTAGAATTAATATTATAACAAGCTAAATTAATATTATAACAAGGTAACCTAAAGTTTGTAATCTATCCGAGAGTAATTGAAAGGTCACTTGATATAGTTTGAAGTAGCTTGCTTTATACCGTACCAGATGTTCTTGATATAGTACTGAACCTAATTTTATTTGTTCATGATTTCCATAGTTTATTTAAATTACGAATACCGTTCGGAATATTGTAAACAACATCCCCCTTTTTTCATTGTTAAAACAAAGCCCCTTTCCTGCAATAATATTACTGTAACATAGTCTAAAATGAGGGAGTAAATGACCTATCCTGAATGGGTTTGAAAGAATTCCAGAATACTAGACTTTCGAAACGGCCGGTAATAACCTCTGATAATCTTTCAGTAGAAACTAGAGAGCATACTTTTCTGTTAGACAAAAGAAATGTTTGATCATTGTCTCGGCACATTATGGGTGCTTGAGTGAAGAAATTGTTTTACATTCACCATGTTATTTGTCTTTTCGTTGTTTTCATGTGTTTTGGCATGCACCTATCGACACTAACCTTTTGTTTTAACTTTGCAGTCCTTCGTGCTCTTCTGGACGTATCCTTTCTATAACTTTATTGTTTATGCATGATCTTTGATAAGTATGCCAATTGTGTGTGTTTGGTACAATCTTTCAATATGATAAAAGTGTTTTTCTTTTGCCGAAAATTTCGAACTTGCACTAGAAAAAATTTCGAAAGTATTATTTTTCCCAGAGAAAACGCTTGATTAGCATTGCTTTAAAAGCTTGGTCTCACACTGAATTGCTTACTTCTAGAAATTGTACGTTGACACGACCTACTCGAACAGGATATGTTCTAACGGTTGTACAACTATAGACTTGAGTTCTAAGAAACTTTTTGTCGACTATGTTTTTCTTGACATGAAAAAGATTTGCCTACGATATCGTTCATATATTCTGAGTCAAGAATGCTGGTAGGAATTCGAATTCGAAAGTAGCTGCAGGTTCCAGTACACTTCTACCGAAGACTCGGAGTTAACGACTTTTGTCCTTGGAAATAATTATTAGATTGAGTTATGTCTTTTGGTTCCATTTCGATTCCTAATGAAATCGTGACACATTCATTTATAATCCTTCATTACTATGTTAGAATCTGTTAAGGTTTGTAAGATTAGAATGGGAATAGATTTTGTTTATTCCTTTTAGTTTTACCAGTTCTTGAGATTCATCAGAAAATGTGAAATTGCACGGATTGTAGGGGTGTGA

mRNA sequence

TTTAACCCAGAAATTATTTTGTAGGCTAACGGGAGAGCTCAACTCGACAAGAACAAGACTCACAGCTGCCGCTGTTCGTAGACAAAGCCTTACCTTCCTCCCCTTGGATCGATCGCAATCAACTGGTAATTTACTGTTATTATTCTTCTGAAATTCAGATCATACAAACAATCCGCTACTGCATTTTGGTACTTTTCTCTCTGTTTCATAGATTTGGATCCATTAGTTGCAGAAGATCCGATCAGACGCCGTTCGAAGCTATGGCTGGATATTCCTCCAATGCTTCCGAGAAGAAATCGTCTGACGCGGTCGACGATATACCGATCTTGAATGCTGAAAATTTGCAAAACAACTTGAAGATTATATACTACAGCCGGACGTTTTTGTCTATTATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTAGCCTGACTGGATTTATATTCTATTTCCTAGTCATGGCAATTACTTCAATTGGACTTGCAGCTAAGGCTGGATTCTCCTTTCATTCGTATTTTGAAAGCTGGAACCAGATTCTACTTGATGGCTTTCTGAGTGGCCTTATGTTCTTGAGATTCATCAGAAAATGTGAAATTGCACGGATTGTAGGGGTGTGA

Coding sequence (CDS)

ATGGCTGGATATTCCTCCAATGCTTCCGAGAAGAAATCGTCTGACGCGGTCGACGATATACCGATCTTGAATGCTGAAAATTTGCAAAACAACTTGAAGATTATATACTACAGCCGGACGTTTTTGTCTATTATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTAGCCTGACTGGATTTATATTCTATTTCCTAGTCATGGCAATTACTTCAATTGGACTTGCAGCTAAGGCTGGATTCTCCTTTCATTCGTATTTTGAAAGCTGGAACCAGATTCTACTTGATGGCTTTCTGAGTGGCCTTATGTTCTTGAGATTCATCAGAAAATGTGAAATTGCACGGATTGTAGGGGTGTGA

Homology

[Close]

BLAST of CmoCh06G015680 vs. Swiss-Prot
Match: EMC6_HUMAN (ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.3e-08
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1


Query: 21  PILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAG 80
           P ++   ++ N  ++ Y RT +S + G  AGILG T L GFIFY L   + S+ L  KAG
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSFHSYFESWNQILLDGFLSGL 103
             ++ YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]

BLAST of CmoCh06G015680 vs. Swiss-Prot
Match: EMC6_MOUSE (ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.3e-08
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1


Query: 21  PILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAG 80
           P ++   ++ N  ++ Y RT +S + G  AGILG T L GFIFY L   + S+ L  KAG
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSFHSYFESWNQILLDGFLSGL 103
             ++ YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]

BLAST of CmoCh06G015680 vs. Swiss-Prot
Match: EMC6_XENLA (ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.3e-08
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYF 87
           ++ N  ++ Y RT +S + G  AGILG TSL GFIFYFL   + S+ L  K+G  ++ YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTSLYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESWNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLVGGL 93

[Close]

BLAST of CmoCh06G015680 vs. Swiss-Prot
Match: EMC6_XENTR (ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYF 87
           ++ N  ++ Y RT +S + G  AGILG T+L GFIFYFL   + S+ L  K+G  ++ YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESWNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLIGGL 93

[Close]

BLAST of CmoCh06G015680 vs. Swiss-Prot
Match: EMC6_BOVIN (ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.1e-07
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 1


Query: 21  PILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAG 80
           P ++   ++ N  ++ Y RT +S + G  AGILG T L GFIFY L   + S+ L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKAR 71

Query: 81  FSFHSYFESWNQILLDGFLSGL 103
             ++ YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]

BLAST of CmoCh06G015680 vs. TrEMBL
Match: A0A0A0LZ06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569390 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.2e-41
Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = 1


Query: 1   MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60
           MAGYSS AS+KKSSD  DDIPI NAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFT LTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ LAAKAGFSFHSYFES NQIL DGFLSGLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLM 103

[Close]

BLAST of CmoCh06G015680 vs. TrEMBL
Match: M5XSX3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013479mg PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.9e-35
Identity = 78/104 (75.00%), Postives = 94/104 (90.38%), Query Frame = 1


Query: 1   MAGYS-SNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLT 60
           M G++ S+ASEKK S+A + +P LNAENLQ+N+K+IYYSRTF+SIIGGVIAGILGFT LT
Sbjct: 1   MGGHNDSSASEKKLSEAANVVPTLNAENLQSNMKVIYYSRTFMSIIGGVIAGILGFTGLT 60

Query: 61  GFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           GFIFYFLVMA+TS+GL AKAGF+ HSYF+SWNQI+LDGFL GL+
Sbjct: 61  GFIFYFLVMAVTSVGLIAKAGFTVHSYFDSWNQIILDGFLGGLL 104

[Close]

BLAST of CmoCh06G015680 vs. TrEMBL
Match: D7SYI1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00610 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.8e-35
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 1


Query: 1   MAGYS-SNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLT 60
           MAG + S ASEKKS++A +D+P  NAENLQ+N+KIIYYSRTFLSIIGGVIAGILGFT  T
Sbjct: 355 MAGRNDSGASEKKSNEATNDMPTFNAENLQSNMKIIYYSRTFLSIIGGVIAGILGFTGFT 414

Query: 61  GFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           GFIFYFLVMAITS+GL AKA FS HSYF+SWN+I+LDGFL GLM
Sbjct: 415 GFIFYFLVMAITSVGLMAKAKFSVHSYFDSWNRIILDGFLGGLM 458

[Close]

BLAST of CmoCh06G015680 vs. TrEMBL
Match: A0A061ER05_THECC (Rab5-interacting family protein OS=Theobroma cacao GN=TCM_021416 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-34
Identity = 76/104 (73.08%), Postives = 93/104 (89.42%), Query Frame = 1


Query: 1   MAGYS-SNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLT 60
           MAG+S SN+SEKKSS+A++D+P  +AENLQNN+K+IYYSRTF+SIIGGV+AGILGFT   
Sbjct: 1   MAGHSDSNSSEKKSSEAMNDVPTFSAENLQNNMKVIYYSRTFMSIIGGVLAGILGFTGFM 60

Query: 61  GFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           GF+ YFLVMAITSIGL AKA FS H+YF+SWN+I+LDGF+ GLM
Sbjct: 61  GFVLYFLVMAITSIGLIAKAKFSVHAYFDSWNRIILDGFMGGLM 104

[Close]

BLAST of CmoCh06G015680 vs. TrEMBL
Match: A0A0B0PFK3_GOSAR (Transmembrane 93 OS=Gossypium arboreum GN=F383_07192 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 7.1e-34
Identity = 76/104 (73.08%), Postives = 92/104 (88.46%), Query Frame = 1


Query: 1   MAGYS-SNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLT 60
           MAG+S S++SEKKSS+A++D+P  + EN+QNN+K+IYYSRTF+SIIGGVIAGILGFT   
Sbjct: 1   MAGHSDSSSSEKKSSEAMNDVPTFSTENMQNNMKVIYYSRTFMSIIGGVIAGILGFTGFM 60

Query: 61  GFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           GFIFYFLVMAITSIGL AKA FS H YF+SWN+I+LDGF+ GLM
Sbjct: 61  GFIFYFLVMAITSIGLIAKAKFSVHLYFDSWNRIILDGFMGGLM 104

[Close]

BLAST of CmoCh06G015680 vs. TAIR10
Match: AT5G49540.1 (AT5G49540.1 Rab5-interacting family protein)

HSP 1 Score: 131.3 bits (329), Expect = 3.8e-31
Identity = 65/96 (67.71%), Postives = 78/96 (81.25%), Query Frame = 1


Query: 8   ASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLV 67
           +SEK+S D + DIP  +AENLQNNLK+I  SRTFLSII GV+AGI+GF  L GF+FYF+V
Sbjct: 3   SSEKRSKDIMSDIPTFSAENLQNNLKVIQNSRTFLSIIAGVLAGIIGFNGLIGFVFYFVV 62

Query: 68  MAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           M ITS+GL AKAGFS   YF+SWN++L DGFL GLM
Sbjct: 63  MLITSVGLMAKAGFSADLYFDSWNRVLFDGFLGGLM 98

[Close]

BLAST of CmoCh06G015680 vs. NCBI nr
Match: gi|659099503|ref|XP_008450632.1| (PREDICTED: ER membrane protein complex subunit 6 [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 7.8e-42
Identity = 93/103 (90.29%), Postives = 96/103 (93.20%), Query Frame = 1


Query: 1   MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60
           MAGYSS AS+KKSSD+ DDIPI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTG
Sbjct: 1   MAGYSSTASDKKSSDSADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60

Query: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ LAAKAGFSFHSYFES NQILLDGFL GLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLGGLM 103

[Close]

BLAST of CmoCh06G015680 vs. NCBI nr
Match: gi|449435645|ref|XP_004135605.1| (PREDICTED: ER membrane protein complex subunit 6 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-41
Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = 1


Query: 1   MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60
           MAGYSS AS+KKSSD  DDIPI NAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFT LTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ LAAKAGFSFHSYFES NQIL DGFLSGLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLM 103

[Close]

BLAST of CmoCh06G015680 vs. NCBI nr
Match: gi|700210966|gb|KGN66062.1| (hypothetical protein Csa_1G569390 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-41
Identity = 92/103 (89.32%), Postives = 95/103 (92.23%), Query Frame = 1


Query: 1   MAGYSSNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60
           MAGYSS AS+KKSSD  DDIPI NAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFT LTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ LAAKAGFSFHSYFES NQIL DGFLSGLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLM 103

[Close]

BLAST of CmoCh06G015680 vs. NCBI nr
Match: gi|1009172447|ref|XP_015867276.1| (PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba])

HSP 1 Score: 165.6 bits (418), Expect = 5.2e-38
Identity = 84/104 (80.77%), Postives = 96/104 (92.31%), Query Frame = 1


Query: 1   MAGYS-SNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLT 60
           MAG++ SNASEKKS++A +D+P  NAEN+Q+N+KIIYYSRTF+SIIGGVIAGILGFTSLT
Sbjct: 1   MAGHNDSNASEKKSNEATNDLPTFNAENMQSNMKIIYYSRTFMSIIGGVIAGILGFTSLT 60

Query: 61  GFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           GFIFYFLVMAITS+GL AKAGFS HSYF SWNQI+LDGFL GLM
Sbjct: 61  GFIFYFLVMAITSVGLTAKAGFSIHSYFSSWNQIVLDGFLGGLM 104

[Close]

BLAST of CmoCh06G015680 vs. NCBI nr
Match: gi|1009173454|ref|XP_015867822.1| (PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba])

HSP 1 Score: 161.4 bits (407), Expect = 9.8e-37
Identity = 82/104 (78.85%), Postives = 95/104 (91.35%), Query Frame = 1


Query: 1   MAGYS-SNASEKKSSDAVDDIPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLT 60
           MAG++ SNASEKKS++A +D+P  NAEN+Q+N+KIIYYSRTF+SIIGGVIAGILGFTSLT
Sbjct: 1   MAGHNDSNASEKKSNEATNDLPTFNAENMQSNMKIIYYSRTFMSIIGGVIAGILGFTSLT 60

Query: 61  GFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           GFIFYFLVMA +S+GL AKAGFS HSYF SWNQI+LDGFL GLM
Sbjct: 61  GFIFYFLVMANSSVGLTAKAGFSIHSYFSSWNQIVLDGFLGGLM 104

The following BLAST results are available for this feature:

BLAST of CmoCh06G015680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EMC6_HUMAN	7.3e-08	37.80	ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1	[more]
EMC6_MOUSE	7.3e-08	37.80	ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=1 SV=1	[more]
EMC6_XENLA	7.3e-08	41.33	ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1	[more]
EMC6_XENTR	1.3e-07	40.00	ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1	[more]
EMC6_BOVIN	8.1e-07	36.59	ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1	[more]

BLAST of CmoCh06G015680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZ06_CUCSA	1.2e-41	89.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569390 PE=4 SV=1	[more]
M5XSX3_PRUPE	2.9e-35	75.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013479mg PE=4 SV=1	[more]
D7SYI1_VITVI	3.8e-35	77.88	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00610 PE=4 SV=...	[more]
A0A061ER05_THECC	1.9e-34	73.08	Rab5-interacting family protein OS=Theobroma cacao GN=TCM_021416 PE=4 SV=1	[more]
A0A0B0PFK3_GOSAR	7.1e-34	73.08	Transmembrane 93 OS=Gossypium arboreum GN=F383_07192 PE=4 SV=1	[more]

BLAST of CmoCh06G015680 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49540.1	3.8e-31	67.71	Rab5-interacting family protein	[more]

BLAST of CmoCh06G015680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099503\|ref\|XP_008450632.1\|	7.8e-42	90.29	PREDICTED: ER membrane protein complex subunit 6 [Cucumis melo]	[more]
gi\|449435645\|ref\|XP_004135605.1\|	1.7e-41	89.32	PREDICTED: ER membrane protein complex subunit 6 [Cucumis sativus]	[more]
gi\|700210966\|gb\|KGN66062.1\|	1.7e-41	89.32	hypothetical protein Csa_1G569390 [Cucumis sativus]	[more]
gi\|1009172447\|ref\|XP_015867276.1\|	5.2e-38	80.77	PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba]	[more]
gi\|1009173454\|ref\|XP_015867822.1\|	9.8e-37	78.85	PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008504	Emc6

Vocabulary: **Cellular Component**
Term	Definition
GO:0005783	endoplasmic reticulum
GO:0016021	integral component of membrane
GO:0072546	ER membrane protein complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0072546	ER membrane protein complex
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G015680.1	CmoCh06G015680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008504	ER membrane protein complex subunit 6	PANTHER	PTHR20994	UNCHARACTERIZED	coord: 8..103 score: 7.2
None	No IPR available	PANTHER	PTHR20994:SF0	ER MEMBRANE PROTEIN COMPLEX SUBUNIT 6	coord: 8..103 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G015680	CmaCh06G015740	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G015680	Cp4.1LG08g05390	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G015680	Carg25646	Silver-seed gourd	carcmoB1007

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G015680	Cucurbita pepo (Zucchini)	cmocpeB766
CmoCh06G015680	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G015680	Bottle gourd (USVL1VR-Ls)	cmolsiB759
CmoCh06G015680	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G015680	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G015680	Silver-seed gourd	carcmoB0103
CmoCh06G015680	Silver-seed gourd	carcmoB0390
CmoCh06G015680	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G015680	Watermelon (97103) v2	cmowmbB833
CmoCh06G015680	Watermelon (97103) v2	cmowmbB838
CmoCh06G015680	Wax gourd	cmowgoB1005
CmoCh06G015680	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh06G015680	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G015680	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G015680	Cucurbita maxima (Rimu)	cmacmoB363
CmoCh06G015680	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G015680	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G015680	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G015680	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G015680	Watermelon (Charleston Gray)	cmowcgB747
CmoCh06G015680	Watermelon (97103) v1	cmowmB793
CmoCh06G015680	Watermelon (97103) v1	cmowmB803