CmaCh06G015740 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G015740
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ER membrane protein complex subunit 6
Location	Cma_Chr06 : 9846779 .. 9851433 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAGATTATATTTTTTTAATTTAACCCAGAAATTATTTTGTAGGCTAACGGGAGAGCTCAACTCGACAAGAACAAGACTCATAGCTGCCGCTGTTCGTAGACAAAGGCTTACCTTCCTCCCCTTGGATCGATCGCAAACAACTGGTAATTTACTGTTATTATTCTTCTGAGATTCAGATCATACAAACAATCCGCTTCTGCATTTTGCAATTCTTCTCTCTGTTTCATAGATTTGGATCCATTAGTTGCAGAAGATCCGGTAGGTTTTCTGTCGCTATTCACTCATCGTGTTGTCTTTCAATTGCCGAGAAGATTCATGTCTAAATTTATTATGGTTTTTCAATTTCCTGCCATTTTTGAACTTCAGATCATACGACGTTAGAAGCTATGGCTGGATATTCCTCCAATGCTTCCGAGAAGAAATCGTCTGACGCGGTCGACGATTTACCGATCTTGAATGCTGAAAATTTGCAAAACAACTTGAAGATTATATACTACAGGTTTTTTGATGCATCAACTAACTTTACTTGTTTGCAAAATCGTCTGACCGTAGTTGACTACTATGAATCTTTATAGAGTTAGAATCCTTCATTGATTGGCCTTTTCTTTCCCAAATCTTTGAGAAGGATTATTTGTTTCTTTTTAATTAGCAGCTTATGTAACTGTAAATTGAGTTGGCTGACCTAAAATTTCAATGGGCCCTGATCACTGTGCAACGGAGGCTGATTCAATTCAATTTCTCAGGAGTGTCTGCATTTAAATTGAGTTGCTACCGAAACGGAAAAAAAGATTATTATCTTCTTATAATTCTTTTGAGTTATGTGAACTAGATTGTAAATTTCGTATCATCTTTTGCAGCCGGACGTTTTTGTCTATTATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTAGCCTGACTGGATTTATATTCTATTTCCTAGTCATGGCAATTACTTCAATTGGACTTGCAGCTAAGGCTGGATTCTCCTTTCATTCGTATTTTGAAAGCTGGAACCAGATTCTACTTGATGGCTTTCTGAGTGGCCTTATGGTATGCATTCTCTGCTCTTATTTTTTTAGATTGGAAAAAAGTTAGAAGACGTAATAGAGAAGAGGAAATAAGTGAATTAGATCAATTTGTTTACTTCAAACTGACCTCTGTTGAATTCTGTCTTAAATATATGAATATTCAGATTTAATGCTTCTAGGTTTTTTAAGTTAGAAACCCTTTCATGTTAGTTGCATACGTTTGTTTTAGATTGTGAAGAAATTAGTTGCATACCTTTTAGGGTGATTTCTTATCCTGGTTAGGCTTTTATACCTTGCTGATTTTTGTAAAATTTTCTCATTTCCTGTTAAGGAAAATAAAGGAAAATGCATTTCAAATGAGGGTTTATTCGGTGAGATTGTAATTGAAGGATATTTTGAAAACCTTGTCTGAATTAGAGATGCCTTGTTAATCAAGGAGTTTAAATCTAAATCGATAAAAAAAGGGATAACAATTTGAGGTCGTTTGATAATACTGATGGGTTAAGGATATAAAAATAGAGGAACAAGTTGATTTCAGCAGACTATCAATATGGGAAAGGGATTTATCTTTTTTTCCTATTCACTGTACACCTCCAATTATCCAATTCCTACAGTGAACCTTGAATGGCCTGAAAGACTGAGTTGGTGGATATAACTGGAAAAAAATAGGACTAAATCCCGGAGCTCCCAAAATCCAATGGGCGTTTCTTGGCTTTGTCTCAAGATTACGGCCTACTAAACAATGAATGATTAGATGGAGGTTTTCTAGGAATTGAGATTCTATGGTAGGGGGGTTGTTAACGGATGCCTCTACTTTCTTAGAACTCAAGGGCACAATTGTACAACCCATAGAATAGAGAATGATATGAAATTCTTGAGAATTTGATCTAACAACCTCGCTGGAAAACAAGACCTTTAGAACTAAATTATCCAATGTAAGATCCCACCTCGGTTGGAAAGGGAACGAAACATTTCTATATATAAGGGTGTGGAAACCTCTCCTTAGTAGACGCGTTTTAAAAACCTTGAGGAGAAGCCCGAAAGGAAAAGCCGAAAGAGGACAATATATGCTAGCGGTGAGTTTGAGATGTTACATCCAAGAACCCCAAAACGATATGCAATCAACCTAAAGGTAAGTTTTGAGTCGGATTACCTTGATGATCAAGATCAAGAGTATGGAAAACTTGTTTCTAAACTCATGATTTGAATGACTCCACAAGATAGCATGGTCAAGGCTACTTGAATGACTATAGCATGCAAATCTAAACACCAGAAATGCAAAGGAACAAACTCATGGCTTAAGAAGCATAATATCCGACTTTCATTTTAATCTCCAAAATCTTCATACTAAAGTAGTAACTTGAATGACTATTTATAGCCTATAAAATAAACCTTAGAGTAACCTATGGTCAATTGAAAGGTTGTAATTTTCTTGTCCATAAATATCATATTGGCCATTAGCTAACGATAACTTGTGATCTTAAAAATAATTCTCTAAGACGTGGAATGTTGTCAACAAATTATGGGACTTGAAGATTGGTAGAAATTTAAAAGATATTGAAGCAACAAAATGGGTTGAATTAAGCCTTGACCTTGCCCCAATGGTATTGTCAAACAAAGCAAATTTACTGACTTGGCTCTCTTGTGTTGATGGGGTCTTCTGTACAAAATTCTTGATCAGGAACATGGGGAAAAAGTAGAAGAAAGGACCTCACCTGAAAAGGTGAAAGTTCTTTAATTGGAAAATAATGCATAACACAAGCAAAAATCTTAAAAAAAAAAGAATGCCTTACATAACTCTTTCTCCAAAGCAGTACATGTGCTCAGAATTTCTGGACGACAATTCTTAATATATTCGAATGATATCTCACATTTCCCAAGGAGGTAAAGGGTCTATTGGACATGACCTTAACGTATCACCCATTCAAGAATGCAGTAGCCTACTAAGGAAAAACCTCATCATGGCTTTCTTTTGGAATCTGTGGAAAGAAAGAAATAAAAAAAATATTTGCGGAAAAGACACATACTTATACAAAACTCTTTGACAATATTGTTTACCAAGCTATATCTTGGTGTAAGCTGTCTAATATTTTTACTTCCTATAGTTATACCTCCCTCATTGTAATTTGGGAAGGTCTTTTGTAATCATCATGGATATTACATCCCATTTGTAAATTTCAATTATCAATGAAATTGTCTCGTATAAAAGAAAAAAAAAAAAACTCTAAAAAGTAAAAAAAATACAATAAACCTCCTTAAATCCTAGAATTAATATTATAACAAGCTAAATTAATATTATAACAAGGTAACCTAAAGTTTGTAATCTATCCAAGAGTAATTGAAAGGTCACTTGATATAGTTTGAAGTAGCTTGCTTTATACCGTATCAGATACTCTTGATATAGTTCTGAACCTAATTTTATTTTATTCATGATCTCCATAGTTTATTTAAATTACGAATACCGTTCGGATTGTTAAAACAAAGCCCCTTTCCTGCAATAATATTACTGTAACATAGTCTAAAATGAGGGAGTAAATGACCTATCCTGAATGGGTTTGAGAGAATTCCAGAATTCTAGACTTTTGAAAAGGCCCGTAATAACCTCTGATAATCTTTCAGTAGAGACTAGAGAGCATACTTTTCTGTTAGACAAAAGAAATGTTTGATCATTGTCTCAGCACATTATGGGTGCTTGAGTGAAGAAATTGTTTTACACCTTCACCATGTTATGTCTTTTCGTTGTTTTCATGTGTTTTGGCATGCACCTATCGACACTAACCTTTTGTTTTAACTTTGCAGTCCTTCGTGCTCTTCTGGACGTATCCTTTCTATAACTTTATAGTTATAAATGATGTTTGATAAGTATGCCATTTGTGTGTTTGGGACAATCTTTCAATATGATAAAAGTGTTTTTCTTTTGCCTAATTTGAAATACTTTCTGAAAATTTCGAACTTGCACTAGAAAAAATTTCGAAAGTATTATTTTTCCAAGAGAAAACGCTTGATTAGCGTTTTTTTTTTTTAATTTAAGAAAAAGCTTCTTTAAAACCTTGTTCTCACACCGAATTGCTTGCTTCTAGAAATTGTACGTTGACACGACCTACTTGAACCGGATATGTTCTAACGGTTGTACAACTATAGACTTGAGTTCTAAGAAACTTTTTGTCGACTATGTTTTTCTTGACATGAAAAAGATTTGCCTACGATATCGTTCATATATTCTGAGTTGAGAATGCTGGTAGGAACTCGAAATCGAAAGTAGCTGCAGCTTCCAGTACAATTCTACCGAAGACTCGGAGTTGATGACTTTTGTCCTTGGAAATAATTATTAGATTGAGTTATGTCTTTTGGTTCCATTTCATTTCCTAATGACATCGTGACAAGGTCATTTATAATCCTTCATTACTATGTTAGAATCTGTCAAGGTTTGTAAGATTAGAATGGGCATAGATTTTGTTTATTCCTTTTAGTTTTACCAGTTCTTGAGATCCATCAGAAAATGTGAAATTGCACGAATTTGTTATAAGTTAAATTACGAGTTTAGCTACTGAAATTTCAAATTTATATTTATTTGTATGAACAAAACTTTTAATTTTATTATGTTTAGAGAGCTATGCATTGA

mRNA sequence

TTGAGATTATATTTTTTTAATTTAACCCAGAAATTATTTTGTAGGCTAACGGGAGAGCTCAACTCGACAAGAACAAGACTCATAGCTGCCGCTGTTCGTAGACAAAGGCTTACCTTCCTCCCCTTGGATCGATCGCAAACAACTGGTAATTTACTGTTATTATTCTTCTGAGATTCAGATCATACAAACAATCCGCTTCTGCATTTTGCAATTCTTCTCTCTGTTTCATAGATTTGGATCCATTAGTTGCAGAAGATCCGATCATACGACGTTAGAAGCTATGGCTGGATATTCCTCCAATGCTTCCGAGAAGAAATCGTCTGACGCGGTCGACGATTTACCGATCTTGAATGCTGAAAATTTGCAAAACAACTTGAAGATTATATACTACAGCCGGACGTTTTTGTCTATTATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTAGCCTGACTGGATTTATATTCTATTTCCTAGTCATGGCAATTACTTCAATTGGACTTGCAGCTAAGGCTGGATTCTCCTTTCATTCGTATTTTGAAAGCTGGAACCAGATTCTACTTGATGGCTTTCTGAGTGGCCTTATGAGAGCTATGCATTGA

Coding sequence (CDS)

ATGGCTGGATATTCCTCCAATGCTTCCGAGAAGAAATCGTCTGACGCGGTCGACGATTTACCGATCTTGAATGCTGAAAATTTGCAAAACAACTTGAAGATTATATACTACAGCCGGACGTTTTTGTCTATTATTGGTGGAGTAATTGCTGGAATTTTGGGATTCACTAGCCTGACTGGATTTATATTCTATTTCCTAGTCATGGCAATTACTTCAATTGGACTTGCAGCTAAGGCTGGATTCTCCTTTCATTCGTATTTTGAAAGCTGGAACCAGATTCTACTTGATGGCTTTCTGAGTGGCCTTATGAGAGCTATGCATTGA

Protein sequence

MAGYSSNASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLMRAMH

Homology

[Close]

BLAST of CmaCh06G015740 vs. Swiss-Prot
Match: EMC6_HUMAN (ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.6e-08
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1


Query: 21  PILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAG 80
           P ++   ++ N  ++ Y RT +S + G  AGILG T L GFIFY L   + S+ L  KAG
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSFHSYFESWNQILLDGFLSGL 103
             ++ YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]

BLAST of CmaCh06G015740 vs. Swiss-Prot
Match: EMC6_MOUSE (ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.6e-08
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1


Query: 21  PILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAG 80
           P ++   ++ N  ++ Y RT +S + G  AGILG T L GFIFY L   + S+ L  KAG
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASVLLSLLLILKAG 71

Query: 81  FSFHSYFESWNQILLDGFLSGL 103
             ++ YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]

BLAST of CmaCh06G015740 vs. Swiss-Prot
Match: EMC6_XENLA (ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.6e-08
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYF 87
           ++ N  ++ Y RT +S + G  AGILG TSL GFIFYFL   + S+ L  K+G  ++ YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTSLYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESWNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLVGGL 93

[Close]

BLAST of CmaCh06G015740 vs. Swiss-Prot
Match: EMC6_XENTR (ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 28  LQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAGFSFHSYF 87
           ++ N  ++ Y RT +S + G  AGILG T+L GFIFYFL   + S+ L  K+G  ++ YF
Sbjct: 19  VRGNAAVLDYCRTSVSALSGATAGILGLTALYGFIFYFLASFLLSLLLVLKSGRKWNKYF 78

Query: 88  ESWNQILLDGFLSGL 103
           +S   +   G + GL
Sbjct: 79  KSRKPLFTGGLIGGL 93

[Close]

BLAST of CmaCh06G015740 vs. Swiss-Prot
Match: EMC6_BOVIN (ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.3e-07
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 1


Query: 21  PILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLVMAITSIGLAAKAG 80
           P ++   ++ N  ++ Y RT +S + G  AGILG T L GFIFY L   + S+ L  KA 
Sbjct: 12  PFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLTGLYGFIFYLLASILLSLLLILKAR 71

Query: 81  FSFHSYFESWNQILLDGFLSGL 103
             ++ YF+S   +   G + GL
Sbjct: 72  RRWNKYFKSRRPLFTGGLIGGL 93

[Close]

BLAST of CmaCh06G015740 vs. TrEMBL
Match: A0A0A0LZ06_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569390 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.8e-41
Identity = 91/103 (88.35%), Postives = 95/103 (92.23%), Query Frame = 1


Query: 1   MAGYSSNASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60
           MAGYSS AS+KKSSD  DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFT LTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ LAAKAGFSFHSYFES NQIL DGFLSGLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLM 103

[Close]

BLAST of CmaCh06G015740 vs. TrEMBL
Match: D7SYI1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00610 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-35
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 1


Query: 1   MAGYS-SNASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLT 60
           MAG + S ASEKKS++A +D+P  NAENLQ+N+KIIYYSRTFLSIIGGVIAGILGFT  T
Sbjct: 355 MAGRNDSGASEKKSNEATNDMPTFNAENLQSNMKIIYYSRTFLSIIGGVIAGILGFTGFT 414

Query: 61  GFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           GFIFYFLVMAITS+GL AKA FS HSYF+SWN+I+LDGFL GLM
Sbjct: 415 GFIFYFLVMAITSVGLMAKAKFSVHSYFDSWNRIILDGFLGGLM 458

[Close]

BLAST of CmaCh06G015740 vs. TrEMBL
Match: M5XSX3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013479mg PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.4e-35
Identity = 78/104 (75.00%), Postives = 94/104 (90.38%), Query Frame = 1


Query: 1   MAGYS-SNASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLT 60
           M G++ S+ASEKK S+A + +P LNAENLQ+N+K+IYYSRTF+SIIGGVIAGILGFT LT
Sbjct: 1   MGGHNDSSASEKKLSEAANVVPTLNAENLQSNMKVIYYSRTFMSIIGGVIAGILGFTGLT 60

Query: 61  GFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           GFIFYFLVMA+TS+GL AKAGF+ HSYF+SWNQI+LDGFL GL+
Sbjct: 61  GFIFYFLVMAVTSVGLIAKAGFTVHSYFDSWNQIILDGFLGGLL 104

[Close]

BLAST of CmaCh06G015740 vs. TrEMBL
Match: A0A061ER05_THECC (Rab5-interacting family protein OS=Theobroma cacao GN=TCM_021416 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.9e-34
Identity = 76/104 (73.08%), Postives = 93/104 (89.42%), Query Frame = 1


Query: 1   MAGYS-SNASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLT 60
           MAG+S SN+SEKKSS+A++D+P  +AENLQNN+K+IYYSRTF+SIIGGV+AGILGFT   
Sbjct: 1   MAGHSDSNSSEKKSSEAMNDVPTFSAENLQNNMKVIYYSRTFMSIIGGVLAGILGFTGFM 60

Query: 61  GFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           GF+ YFLVMAITSIGL AKA FS H+YF+SWN+I+LDGF+ GLM
Sbjct: 61  GFVLYFLVMAITSIGLIAKAKFSVHAYFDSWNRIILDGFMGGLM 104

[Close]

BLAST of CmaCh06G015740 vs. TrEMBL
Match: B9HIL0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s10180g PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 6.4e-34
Identity = 76/103 (73.79%), Postives = 89/103 (86.41%), Query Frame = 1


Query: 1   MAGYSSNASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60
           MAG+  N SEKKSSDA+DDL    AENLQ+N+K+IYYSRTFLSIIGGV+AGILGFT LTG
Sbjct: 1   MAGH--NESEKKSSDALDDLQTFRAENLQSNMKVIYYSRTFLSIIGGVVAGILGFTGLTG 60

Query: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           F+FYFLVMAITS+ L AKA FS H+YF+SWN+++ DGFL GLM
Sbjct: 61  FVFYFLVMAITSVALIAKAKFSIHTYFDSWNRVVFDGFLGGLM 101

[Close]

BLAST of CmaCh06G015740 vs. TAIR10
Match: AT5G49540.1 (AT5G49540.1 Rab5-interacting family protein)

HSP 1 Score: 130.6 bits (327), Expect = 5.9e-31
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 1


Query: 8   ASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTGFIFYFLV 67
           +SEK+S D + D+P  +AENLQNNLK+I  SRTFLSII GV+AGI+GF  L GF+FYF+V
Sbjct: 3   SSEKRSKDIMSDIPTFSAENLQNNLKVIQNSRTFLSIIAGVLAGIIGFNGLIGFVFYFVV 62

Query: 68  MAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           M ITS+GL AKAGFS   YF+SWN++L DGFL GLM
Sbjct: 63  MLITSVGLMAKAGFSADLYFDSWNRVLFDGFLGGLM 98

[Close]

BLAST of CmaCh06G015740 vs. NCBI nr
Match: gi|659099503|ref|XP_008450632.1| (PREDICTED: ER membrane protein complex subunit 6 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-41
Identity = 92/103 (89.32%), Postives = 96/103 (93.20%), Query Frame = 1


Query: 1   MAGYSSNASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60
           MAGYSS AS+KKSSD+ DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAGILGFT LTG
Sbjct: 1   MAGYSSTASDKKSSDSADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTGLTG 60

Query: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ LAAKAGFSFHSYFES NQILLDGFL GLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILLDGFLGGLM 103

[Close]

BLAST of CmaCh06G015740 vs. NCBI nr
Match: gi|449435645|ref|XP_004135605.1| (PREDICTED: ER membrane protein complex subunit 6 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.7e-41
Identity = 91/103 (88.35%), Postives = 95/103 (92.23%), Query Frame = 1


Query: 1   MAGYSSNASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60
           MAGYSS AS+KKSSD  DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFT LTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ LAAKAGFSFHSYFES NQIL DGFLSGLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLM 103

[Close]

BLAST of CmaCh06G015740 vs. NCBI nr
Match: gi|700210966|gb|KGN66062.1| (hypothetical protein Csa_1G569390 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.7e-41
Identity = 91/103 (88.35%), Postives = 95/103 (92.23%), Query Frame = 1


Query: 1   MAGYSSNASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLTG 60
           MAGYSS AS+KKSSD  DD+PI NAENLQNNLKIIYYSRTFLSIIGGVIAG+LGFT LTG
Sbjct: 1   MAGYSSTASDKKSSDLADDIPIFNAENLQNNLKIIYYSRTFLSIIGGVIAGVLGFTGLTG 60

Query: 61  FIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           FIFYFLVMAITS+ LAAKAGFSFHSYFES NQIL DGFLSGLM
Sbjct: 61  FIFYFLVMAITSVALAAKAGFSFHSYFESCNQILFDGFLSGLM 103

[Close]

BLAST of CmaCh06G015740 vs. NCBI nr
Match: gi|1009172447|ref|XP_015867276.1| (PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba])

HSP 1 Score: 166.4 bits (420), Expect = 2.7e-38
Identity = 85/104 (81.73%), Postives = 96/104 (92.31%), Query Frame = 1


Query: 1   MAGYS-SNASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLT 60
           MAG++ SNASEKKS++A +DLP  NAEN+Q+N+KIIYYSRTF+SIIGGVIAGILGFTSLT
Sbjct: 1   MAGHNDSNASEKKSNEATNDLPTFNAENMQSNMKIIYYSRTFMSIIGGVIAGILGFTSLT 60

Query: 61  GFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           GFIFYFLVMAITS+GL AKAGFS HSYF SWNQI+LDGFL GLM
Sbjct: 61  GFIFYFLVMAITSVGLTAKAGFSIHSYFSSWNQIVLDGFLGGLM 104

[Close]

BLAST of CmaCh06G015740 vs. NCBI nr
Match: gi|1009173454|ref|XP_015867822.1| (PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba])

HSP 1 Score: 162.2 bits (409), Expect = 5.2e-37
Identity = 83/104 (79.81%), Postives = 95/104 (91.35%), Query Frame = 1


Query: 1   MAGYS-SNASEKKSSDAVDDLPILNAENLQNNLKIIYYSRTFLSIIGGVIAGILGFTSLT 60
           MAG++ SNASEKKS++A +DLP  NAEN+Q+N+KIIYYSRTF+SIIGGVIAGILGFTSLT
Sbjct: 1   MAGHNDSNASEKKSNEATNDLPTFNAENMQSNMKIIYYSRTFMSIIGGVIAGILGFTSLT 60

Query: 61  GFIFYFLVMAITSIGLAAKAGFSFHSYFESWNQILLDGFLSGLM 104
           GFIFYFLVMA +S+GL AKAGFS HSYF SWNQI+LDGFL GLM
Sbjct: 61  GFIFYFLVMANSSVGLTAKAGFSIHSYFSSWNQIVLDGFLGGLM 104

The following BLAST results are available for this feature:

BLAST of CmaCh06G015740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EMC6_HUMAN	6.6e-08	37.80	ER membrane protein complex subunit 6 OS=Homo sapiens GN=EMC6 PE=1 SV=1	[more]
EMC6_MOUSE	6.6e-08	37.80	ER membrane protein complex subunit 6 OS=Mus musculus GN=Emc6 PE=1 SV=1	[more]
EMC6_XENLA	6.6e-08	41.33	ER membrane protein complex subunit 6 OS=Xenopus laevis GN=emc6 PE=3 SV=1	[more]
EMC6_XENTR	1.1e-07	40.00	ER membrane protein complex subunit 6 OS=Xenopus tropicalis GN=emc6 PE=3 SV=1	[more]
EMC6_BOVIN	7.3e-07	36.59	ER membrane protein complex subunit 6 OS=Bos taurus GN=EMC6 PE=3 SV=1	[more]

BLAST of CmaCh06G015740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZ06_CUCSA	1.8e-41	88.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569390 PE=4 SV=1	[more]
D7SYI1_VITVI	2.6e-35	77.88	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00610 PE=4 SV=...	[more]
M5XSX3_PRUPE	4.4e-35	75.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013479mg PE=4 SV=1	[more]
A0A061ER05_THECC	2.9e-34	73.08	Rab5-interacting family protein OS=Theobroma cacao GN=TCM_021416 PE=4 SV=1	[more]
B9HIL0_POPTR	6.4e-34	73.79	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s10180g PE=4 SV=1	[more]

BLAST of CmaCh06G015740 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49540.1	5.9e-31	66.67	Rab5-interacting family protein	[more]

BLAST of CmaCh06G015740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099503\|ref\|XP_008450632.1\|	1.2e-41	89.32	PREDICTED: ER membrane protein complex subunit 6 [Cucumis melo]	[more]
gi\|449435645\|ref\|XP_004135605.1\|	2.7e-41	88.35	PREDICTED: ER membrane protein complex subunit 6 [Cucumis sativus]	[more]
gi\|700210966\|gb\|KGN66062.1\|	2.7e-41	88.35	hypothetical protein Csa_1G569390 [Cucumis sativus]	[more]
gi\|1009172447\|ref\|XP_015867276.1\|	2.7e-38	81.73	PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba]	[more]
gi\|1009173454\|ref\|XP_015867822.1\|	5.2e-37	79.81	PREDICTED: ER membrane protein complex subunit 6-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008504	Emc6

Vocabulary: **Cellular Component**
Term	Definition
GO:0005783	endoplasmic reticulum
GO:0016021	integral component of membrane
GO:0072546	ER membrane protein complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0072546	ER membrane protein complex
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G015740.1	CmaCh06G015740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008504	ER membrane protein complex subunit 6	PANTHER	PTHR20994	UNCHARACTERIZED	coord: 8..103 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G015740	CmoCh06G015680	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G015740	Cp4.1LG08g05390	Cucurbita pepo (Zucchini)	cmacpeB853
CmaCh06G015740	Carg25646	Silver-seed gourd	carcmaB1036

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G015740	Cucumber (Gy14) v2	cgybcmaB427
CmaCh06G015740	Melon (DHL92) v3.6.1	cmamedB846
CmaCh06G015740	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G015740	Silver-seed gourd	carcmaB0095
CmaCh06G015740	Silver-seed gourd	carcmaB0393
CmaCh06G015740	Cucumber (Chinese Long) v3	cmacucB0965
CmaCh06G015740	Watermelon (97103) v2	cmawmbB856
CmaCh06G015740	Watermelon (97103) v2	cmawmbB865
CmaCh06G015740	Wax gourd	cmawgoB1001
CmaCh06G015740	Wax gourd	cmawgoB1006
CmaCh06G015740	Cucurbita maxima (Rimu)	cmacmaB284
CmaCh06G015740	Cucurbita maxima (Rimu)	cmacmaB369
CmaCh06G015740	Cucurbita maxima (Rimu)	cmacmaB554
CmaCh06G015740	Cucumber (Gy14) v1	cgycmaB0727
CmaCh06G015740	Cucurbita moschata (Rifu)	cmacmoB812
CmaCh06G015740	Cucurbita moschata (Rifu)	cmacmoB797
CmaCh06G015740	Cucurbita moschata (Rifu)	cmacmoB840
CmaCh06G015740	Wild cucumber (PI 183967)	cmacpiB826
CmaCh06G015740	Cucumber (Chinese Long) v2	cmacuB814
CmaCh06G015740	Melon (DHL92) v3.5.1	cmameB747
CmaCh06G015740	Melon (DHL92) v3.5.1	cmameB763
CmaCh06G015740	Watermelon (Charleston Gray)	cmawcgB737
CmaCh06G015740	Watermelon (Charleston Gray)	cmawcgB745
CmaCh06G015740	Watermelon (97103) v1	cmawmB798
CmaCh06G015740	Watermelon (97103) v1	cmawmB811
CmaCh06G015740	Cucurbita pepo (Zucchini)	cmacpeB837
CmaCh06G015740	Cucurbita pepo (Zucchini)	cmacpeB812
CmaCh06G015740	Bottle gourd (USVL1VR-Ls)	cmalsiB741
CmaCh06G015740	Bottle gourd (USVL1VR-Ls)	cmalsiB765