CmoCh06G015030 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh06G015030
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransmembrane protein, putative
LocationCmo_Chr06 : 10764570 .. 10764926 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAAGAACGGCAAGGCGGAGCTCCCCACGGTGTTTTACTGGCGGTGGTCGTCGCCATCGTCATCGTTGGCCCCTTCCTCCTCGGCGACGGGGAGGCTCTTACCGAAGCCATTTCCGACCTCCTCAGCCCCTTCGGCCTCCTCCTCCTCCCCATCCTCCTCCTTCTCGCCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAGCCTGACTCCATCCACCGAGTCACTGGTTCCCCCGTCGGCGTCGCTCTCTTCCTCGTCCTCATTCTCTTCCTCCTCTACAATCGGATTTCGATCTTCGGCGGCGACGATGATTCCGGCGACTGA

mRNA sequence

ATGATTGAAGAACGGCAAGGCGGAGCTCCCCACGGTGTTTTACTGGCGGTGGTCGTCGCCATCGTCATCGTTGGCCCCTTCCTCCTCGGCGACGGGGAGGCTCTTACCGAAGCCATTTCCGACCTCCTCAGCCCCTTCGGCCTCCTCCTCCTCCCCATCCTCCTCCTTCTCGCCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAGCCTGACTCCATCCACCGAGTCACTGGTTCCCCCGTCGGCGTCGCTCTCTTCCTCGTCCTCATTCTCTTCCTCCTCTACAATCGGATTTCGATCTTCGGCGGCGACGATGATTCCGGCGACTGA

Coding sequence (CDS)

ATGATTGAAGAACGGCAAGGCGGAGCTCCCCACGGTGTTTTACTGGCGGTGGTCGTCGCCATCGTCATCGTTGGCCCCTTCCTCCTCGGCGACGGGGAGGCTCTTACCGAAGCCATTTCCGACCTCCTCAGCCCCTTCGGCCTCCTCCTCCTCCCCATCCTCCTCCTTCTCGCCATCCAGTTCCTCTCCTCCGATCGCGGCTCCTTCGTCTCCGCCATCTTCTCCTCCGGCGAGCCTGACTCCATCCACCGAGTCACTGGTTCCCCCGTCGGCGTCGCTCTCTTCCTCGTCCTCATTCTCTTCCTCCTCTACAATCGGATTTCGATCTTCGGCGGCGACGATGATTCCGGCGACTGA
Homology
[Close]
BLAST of CmoCh06G015030 vs. TrEMBL
Match: A0A0A0L5U0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G154405 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.8e-51
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 1 

Query: 1   MIEERQGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLAI 60
           MIEERQGGAPH +LLAVVVAIVIV PFLLGD GEALT+AISDLLSPFGLLLLPILLLL I
Sbjct: 1   MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLLPILLLLTI 60

Query: 61  QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSGD 119
           QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSGD
Sbjct: 61  QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSGD 119

[Close]
BLAST of CmoCh06G015030 vs. TrEMBL
Match: A0A061EPD5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021224 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 6.8e-45
Identity = 97/117 (82.91%), Postives = 109/117 (93.16%), Query Frame = 1 

Query: 1   MIEERQGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLAI 60
           M+ ERQGGAPHGV+LAVVV IV++ PFL GD GEA+TEAI++LLSP GLLLLPI+LLL I
Sbjct: 1   MLPERQGGAPHGVILAVVVGIVVLAPFLFGDQGEAITEAITELLSPVGLLLLPIILLLTI 60

Query: 61  QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDS 117
           QFLSSDRGSFVS+IFS+GEPDSIHRV+GSP GVALFLVLILFLLYNR+SIFGGDDDS
Sbjct: 61  QFLSSDRGSFVSSIFSTGEPDSIHRVSGSPFGVALFLVLILFLLYNRVSIFGGDDDS 117

[Close]
BLAST of CmoCh06G015030 vs. TrEMBL
Match: A0A067JYF5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18888 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.6e-44
Identity = 98/121 (80.99%), Postives = 110/121 (90.91%), Query Frame = 1 

Query: 1   MIEER--QGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLL 60
           M EER  QGGAPHG++LAVVV  V++ PFLLGD GEA+TEAI++LLSP GLLLLPI+LLL
Sbjct: 1   MFEERPQQGGAPHGIILAVVVCTVVLAPFLLGDQGEAITEAITELLSPVGLLLLPIILLL 60

Query: 61  AIQFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSG 119
            IQFLSSDRGSFVS IFS+GEPD+IHRV+GSP GVALFLVLILFLLYNR+SIFGGDDDSG
Sbjct: 61  TIQFLSSDRGSFVSTIFSTGEPDTIHRVSGSPFGVALFLVLILFLLYNRMSIFGGDDDSG 120

[Close]
BLAST of CmoCh06G015030 vs. TrEMBL
Match: W9RVE3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023507 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.4e-44
Identity = 96/117 (82.05%), Postives = 110/117 (94.02%), Query Frame = 1 

Query: 3   EERQGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLAIQF 62
           +ER GGAPHGVLLAVVVAIV++ PFLLGD GEA+TEAIS+LLSP GLLLLPI LLL IQF
Sbjct: 4   QERHGGAPHGVLLAVVVAIVVLVPFLLGDRGEAVTEAISELLSPVGLLLLPIGLLLTIQF 63

Query: 63  LSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSGD 119
           LSS+RGSFV+AIFS+GEPDSIHR++GS +GVALFL+L+LFLLYNR+SIFGGDDDSGD
Sbjct: 64  LSSERGSFVAAIFSTGEPDSIHRISGSSLGVALFLILLLFLLYNRVSIFGGDDDSGD 120

[Close]
BLAST of CmoCh06G015030 vs. TrEMBL
Match: A0A0D2UV89_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G191100 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-43
Identity = 95/120 (79.17%), Postives = 110/120 (91.67%), Query Frame = 1 

Query: 1   MIEERQGG-APHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLA 60
           M+ ERQGG APHG++LAVVV IV++ PFL GD GEA+TEAIS+LL+P GLLLLPI+LLL 
Sbjct: 1   MLPERQGGGAPHGIILAVVVGIVVLAPFLFGDQGEAITEAISELLTPLGLLLLPIILLLT 60

Query: 61  IQFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSGD 119
           IQFLSSDRGSFVSA+FS+GEPD+IHRV+GSP GVALFL+LILFLLYNR+SIFGGDDDS D
Sbjct: 61  IQFLSSDRGSFVSAVFSTGEPDTIHRVSGSPFGVALFLLLILFLLYNRVSIFGGDDDSDD 120

[Close]
BLAST of CmoCh06G015030 vs. TAIR10
Match: AT3G06890.1 (AT3G06890.1 unknown protein)

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-42
Identity = 88/113 (77.88%), Postives = 103/113 (91.15%), Query Frame = 1 

Query: 7   GGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLAIQFLSSD 66
           G APHG++LAVVVA+V++ PF +GD GEA+T+AI++LLSP GLLLLPI+LLL IQFLSS+
Sbjct: 16  GSAPHGIILAVVVALVVLVPFFIGDSGEAITDAIAELLSPVGLLLLPIILLLTIQFLSSE 75

Query: 67  RGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSGD 119
           RGSFVSAIFS+GEP+SIHRV+GSPVGVALFLVLILFLLY R SIFGGDD S D
Sbjct: 76  RGSFVSAIFSTGEPESIHRVSGSPVGVALFLVLILFLLYYRFSIFGGDDGSDD 128

[Close]
BLAST of CmoCh06G015030 vs. NCBI nr
Match: gi|449432860|ref|XP_004134216.1| (PREDICTED: uncharacterized protein LOC101205160 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 4.1e-51
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 1 

Query: 1   MIEERQGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLAI 60
           MIEERQGGAPH +LLAVVVAIVIV PFLLGD GEALT+AISDLLSPFGLLLLPILLLL I
Sbjct: 1   MIEERQGGAPHAILLAVVVAIVIVVPFLLGDQGEALTDAISDLLSPFGLLLLPILLLLTI 60

Query: 61  QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSGD 119
           QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSGD
Sbjct: 61  QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSGD 119

[Close]
BLAST of CmoCh06G015030 vs. NCBI nr
Match: gi|590661219|ref|XP_007035612.1| (Uncharacterized protein TCM_021224 [Theobroma cacao])

HSP 1 Score: 188.0 bits (476), Expect = 9.7e-45
Identity = 97/117 (82.91%), Postives = 109/117 (93.16%), Query Frame = 1 

Query: 1   MIEERQGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLAI 60
           M+ ERQGGAPHGV+LAVVV IV++ PFL GD GEA+TEAI++LLSP GLLLLPI+LLL I
Sbjct: 1   MLPERQGGAPHGVILAVVVGIVVLAPFLFGDQGEAITEAITELLSPVGLLLLPIILLLTI 60

Query: 61  QFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDS 117
           QFLSSDRGSFVS+IFS+GEPDSIHRV+GSP GVALFLVLILFLLYNR+SIFGGDDDS
Sbjct: 61  QFLSSDRGSFVSSIFSTGEPDSIHRVSGSPFGVALFLVLILFLLYNRVSIFGGDDDS 117

[Close]
BLAST of CmoCh06G015030 vs. NCBI nr
Match: gi|802701504|ref|XP_012083955.1| (PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas])

HSP 1 Score: 186.0 bits (471), Expect = 3.7e-44
Identity = 98/121 (80.99%), Postives = 110/121 (90.91%), Query Frame = 1 

Query: 1   MIEER--QGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLL 60
           M EER  QGGAPHG++LAVVV  V++ PFLLGD GEA+TEAI++LLSP GLLLLPI+LLL
Sbjct: 1   MFEERPQQGGAPHGIILAVVVCTVVLAPFLLGDQGEAITEAITELLSPVGLLLLPIILLL 60

Query: 61  AIQFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSG 119
            IQFLSSDRGSFVS IFS+GEPD+IHRV+GSP GVALFLVLILFLLYNR+SIFGGDDDSG
Sbjct: 61  TIQFLSSDRGSFVSTIFSTGEPDTIHRVSGSPFGVALFLVLILFLLYNRMSIFGGDDDSG 120

[Close]
BLAST of CmoCh06G015030 vs. NCBI nr
Match: gi|703105502|ref|XP_010098261.1| (hypothetical protein L484_023507 [Morus notabilis])

HSP 1 Score: 185.3 bits (469), Expect = 6.3e-44
Identity = 96/117 (82.05%), Postives = 110/117 (94.02%), Query Frame = 1 

Query: 3   EERQGGAPHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPILLLLAIQF 62
           +ER GGAPHGVLLAVVVAIV++ PFLLGD GEA+TEAIS+LLSP GLLLLPI LLL IQF
Sbjct: 4   QERHGGAPHGVLLAVVVAIVVLVPFLLGDRGEAVTEAISELLSPVGLLLLPIGLLLTIQF 63

Query: 63  LSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGDDDSGD 119
           LSS+RGSFV+AIFS+GEPDSIHR++GS +GVALFL+L+LFLLYNR+SIFGGDDDSGD
Sbjct: 64  LSSERGSFVAAIFSTGEPDSIHRISGSSLGVALFLILLLFLLYNRVSIFGGDDDSGD 120

[Close]
BLAST of CmoCh06G015030 vs. NCBI nr
Match: gi|1009163267|ref|XP_015899873.1| (PREDICTED: uncharacterized protein LOC107433134 [Ziziphus jujuba])

HSP 1 Score: 185.3 bits (469), Expect = 6.3e-44
Identity = 100/125 (80.00%), Postives = 113/125 (90.40%), Query Frame = 1 

Query: 1   MIEERQGG------APHGVLLAVVVAIVIVGPFLLGD-GEALTEAISDLLSPFGLLLLPI 60
           MI ERQGG      APHGVLLAVVVAIV+V PFL+GD GEA+TEAIS+LLSP GLLLLPI
Sbjct: 1   MIGERQGGYGGGNRAPHGVLLAVVVAIVVVVPFLVGDQGEAITEAISELLSPVGLLLLPI 60

Query: 61  LLLLAIQFLSSDRGSFVSAIFSSGEPDSIHRVTGSPVGVALFLVLILFLLYNRISIFGGD 119
           +LLL IQFLSSDRGSFVS++FS+GEPD+IHRV+GSPVGVALFL+LILFLLYNR+SIFGGD
Sbjct: 61  ILLLTIQFLSSDRGSFVSSMFSTGEPDTIHRVSGSPVGVALFLILILFLLYNRVSIFGGD 120

The following BLAST results are available for this feature:
BLAST of CmoCh06G015030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh06G015030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5U0_CUCSA2.8e-5194.96Uncharacterized protein OS=Cucumis sativus GN=Csa_3G154405 PE=4 SV=1[more]
A0A061EPD5_THECC6.8e-4582.91Uncharacterized protein OS=Theobroma cacao GN=TCM_021224 PE=4 SV=1[more]
A0A067JYF5_JATCU2.6e-4480.99Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18888 PE=4 SV=1[more]
W9RVE3_9ROSA4.4e-4482.05Uncharacterized protein OS=Morus notabilis GN=L484_023507 PE=4 SV=1[more]
A0A0D2UV89_GOSRA1.3e-4379.17Uncharacterized protein OS=Gossypium raimondii GN=B456_011G191100 PE=4 SV=1[more]
BLAST of CmoCh06G015030 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06890.11.6e-4277.88 unknown protein[more]
BLAST of CmoCh06G015030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432860|ref|XP_004134216.1|4.1e-5194.96PREDICTED: uncharacterized protein LOC101205160 [Cucumis sativus][more]
gi|590661219|ref|XP_007035612.1|9.7e-4582.91Uncharacterized protein TCM_021224 [Theobroma cacao][more]
gi|802701504|ref|XP_012083955.1|3.7e-4480.99PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas][more]
gi|703105502|ref|XP_010098261.1|6.3e-4482.05hypothetical protein L484_023507 [Morus notabilis][more]
gi|1009163267|ref|XP_015899873.1|6.3e-4480.00PREDICTED: uncharacterized protein LOC107433134 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G015030.1CmoCh06G015030.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306FAMILY NOT NAMEDcoord: 2..116
score: 2.4
NoneNo IPR availablePANTHERPTHR33306:SF1SUBFAMILY NOT NAMEDcoord: 2..116
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh06G015030Cucsa.253010Cucumber (Gy14) v1cgycmoB0718
CmoCh06G015030CmaCh14G016160Cucurbita maxima (Rimu)cmacmoB271
CmoCh06G015030CmaCh06G015050Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G015030Cla021748Watermelon (97103) v1cmowmB793
CmoCh06G015030CSPI03G14500Wild cucumber (PI 183967)cmocpiB814
CmoCh06G015030Cla97C05G087700Watermelon (97103) v2cmowmbB833
CmoCh06G015030Bhi01G000727Wax gourdcmowgoB1005
CmoCh06G015030Carg17337Silver-seed gourdcarcmoB0825
CmoCh06G015030Carg20103Silver-seed gourdcarcmoB1125
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G015030Cucurbita moschata (Rifu)cmocmoB224
CmoCh06G015030Cucurbita moschata (Rifu)cmocmoB308
CmoCh06G015030Cucurbita moschata (Rifu)cmocmoB484
CmoCh06G015030Cucurbita maxima (Rimu)cmacmoB362
CmoCh06G015030Cucurbita maxima (Rimu)cmacmoB910
CmoCh06G015030Cucumber (Chinese Long) v2cmocuB806
CmoCh06G015030Melon (DHL92) v3.5.1cmomeB738
CmoCh06G015030Melon (DHL92) v3.5.1cmomeB755
CmoCh06G015030Watermelon (Charleston Gray)cmowcgB743
CmoCh06G015030Watermelon (Charleston Gray)cmowcgB746
CmoCh06G015030Watermelon (97103) v1cmowmB802
CmoCh06G015030Cucurbita pepo (Zucchini)cmocpeB776
CmoCh06G015030Cucurbita pepo (Zucchini)cmocpeB787
CmoCh06G015030Cucurbita pepo (Zucchini)cmocpeB796
CmoCh06G015030Bottle gourd (USVL1VR-Ls)cmolsiB733
CmoCh06G015030Bottle gourd (USVL1VR-Ls)cmolsiB752
CmoCh06G015030Cucumber (Gy14) v2cgybcmoB401
CmoCh06G015030Melon (DHL92) v3.6.1cmomedB840
CmoCh06G015030Melon (DHL92) v3.6.1cmomedB857
CmoCh06G015030Silver-seed gourdcarcmoB0102
CmoCh06G015030Silver-seed gourdcarcmoB0959
CmoCh06G015030Cucumber (Chinese Long) v3cmocucB0953
CmoCh06G015030Watermelon (97103) v2cmowmbB837
CmoCh06G015030Wax gourdcmowgoB1000