CmoCh06G009270 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G009270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	50S ribosomal L25
Location	Cmo_Chr06 : 6740690 .. 6743549 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGGAAAGAAGGAGTACATCTTAACCAGCAGGTTCAGTCGACAACTCCAGCCGCCTCACCTCAAGCTCTCGCTCTTATTTCACTCCAACGGCGACGGCACCAGCAGCCTGCGGCGAAGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTTCAACCTCTACGGCCGTCTCAACGGAACTCACCTTCTACGAATTGACCTAAATCGGTACAATACCCCTTCAGATTTCTCCACTAAAACCCTCCCTTAAGCCCTTCCGTTCATCCTTCTCCGCCCAATGCTACGCTTCTACCACTCTCCTACTCTCTCAAGAGTCCTCCTCCTCCGGAGGTTTTCCTCCGCTGCCACCGCCACCGCTCCACCCCTTGATTCCGATCCCGAACCTTCATTTTCGTACTTGGAGGGTTTTCCGAAGCCAGATCCGAAGTACGCCGAGACAATCCTCGCCATTCCGCGCTCCATCTCCGGAAAGAACATTTCCGCTAAAGAGCGCAAGGTTGGCCGCGTTCCAAGCATCGTGTTCGAGCAAGAGGACGGTCAGCATGGCGGAAATAAGCGTCTCATATCTGTACGGACTAATCAAATTAGGAAGCTTGTAAATCATCTAGGTCGCTCTTTCTTCCTCTCCAGGCTTTTTGATCTCGAAGTTCGGTCCGAGTTCGAATCCGGGGATATTGTTGAGAAGGTTCGGGTCTTACCTCGGAAGGTACTCTATTATCTTGTCTGTAAGGACTAAATTTCGCTTAGGAACTTTCATGAAATTTCCAACTTATTGAGTTTATGAGATGATTTATGAGGAGGATTAGAATAATTGATTGTTTCATGGTCGTAAAGGAGCTGAGAGCATTGTGCACACTGTAGTTTCAATGATCATTATATTTCATGTATATGTTTTGATTAATCAGAAGATAAGAAGATGGGTTTAGTTCAATTTTGATCATAAGTTAGTGTAAGATCTTGTGAGAATATATATAATATAATACCCATTCTGAACTTGCACCATTCATGTTTGTTCAGATTCATCTTCATGCGGGAACAGATGCACCACTTAATGTTACTTTCATAAGGGCACCTTCACACGCTTTATTAAAAGTTGATGTACCTCTTGTTTTCCGAGGGGAAGATGTATGCCCTGGATTGAGGAAAGGTACTGCTGCAAGACTAAGTTCCTTTTATTTGATTTTCTTTAAAGTCTATAAATGTTATGCAGTAATTTATAAGATTTGAAGATATAACAGCTTTTTGTTTGGGTGGGATTTCGTGAGATCCCACATCAGTTGGGGAGGAGAACAAAACATCCTTTATAAGAGTGTGGAAACCTCTCCCTAACAGACGCGTTTTAAAAACCTTGCGGGGAAGCCCGAAAGAGAAGCCTAAAGAGGATAATATTTGCTTGTGGTGGGCTTCGGTTGTTATAAATGGTATTAGAGCCAGACACCGGGCGATGTGCTAGTGAGAAGGTTGAGCTCCCCGAAGGGGGTGGACACGGGGCGGTGTGCCAACAAGAATGCTGGATCCCAAAGGGGGGTGGATTTGGGGGTCCCACCTCAATTGGAGAAGGAATGAGTGCTAGCGAGAAAGTTGGGCTCCGAAGGGGGGTGAATTGTGAGATCCCATATCAGTTGGGGAGGAGAACGAAATACCCTTTATAAGGGTGTGGAAATAGCAGTTTATAAGGGTATGGAAATAGCAGTCGCGTTTTAAAAACATTTAAGGGAAAACCAGAATGGGAAAGCTCAAAGAGGACCATATCTGCCAGCTGTGGGCTTGGACGGTTACAGATTTACTTTGAAACTATCATTGACATGGGATTCTTGAATTCTCCAGCTAGATGGGGATATGGATCTAAATATGTTAATATTACCAGAATTTAGCTTCTGTTAAATTGAAACATCAGGTTTGTTTTCTGATAGATCGGGTCTAAAGGATCTAGTTTCTGTTTCTGCATTGTTCTTGCATCTTGTTTCTGATTTTGTAGGGCATTTTTGTTTGTACTCCTTTTCTCATTACAAAAAATTCAGAAAAGGAAGTACTTGCATCTTGTTTCTGCATTCGTACTTTCTGCAAAGTTTCTGGTTTACTTAAAAATGTTCTGGCATTCCTACGAAAAAATTATTGCGGGCGTCGATCCTGATTATGTTATCTTCAAAGGAGAGAACAATTATATTCTTACTCCTTTAGTGAACAGTTTTCTAATGTTTGAAAAATTCTACAGGATCTTATTTGAATACGATTAAGAGGACAGTTAAATACCTTTGCCCTGCTGATATTGTTCCTCCATATATCGATGTTGATCTTAGCGAGTTAGATGTTGGGCAAAAGTTGGTTACGGGTGACCTCAAGGTTCATCCTGCGTTAAAGCTTCTTCGGTCAAAGGACGAGCCTGTTTGTAAGATTGCAGGAGCCCGAGCTTCCGATCAACAAAGGAAATCAAAGTAACTCTGGACTATCAATATCTTAGTTGCTTCGACATTAAAGCTTCTTCTGTTAAAGAAGACAATGTTTGTAAGATTATGGGATCCAGGATTTCCTGATCAGCCAAGAAATCTTAATAATCCCTCCAGATTTTGATCACCGTGGGTTTTAAATTTTTTCTCCCAATACTTTAGAAAGCAAAGTACGTTGTTTGTTGTTGGTTCACTAGCATTTATTTGATCTCTCTGTTCATGGAATGGCTTGAACTCTGATGAGCAAGAATATTGTGGTAACTTTTTAGAGGGAGTTTTTAGCTTAATTGGAGGAGGCATTTGTAACATATTATACAATATTTCCTTGAAATTGGTTTCCCATTGCATTGGTTAATGTTATTCAAGGGGCAAATGCTATTGGTTCCTAAATTTTAAAGAGCACTTGGCTGGG

mRNA sequence

CCGGAAAGAAGGAGTACATCTTAACCAGCAGGTTCAGTCGACAACTCCAGCCGCCTCACCTCAAGCTCTCGCTCTTATTTCACTCCAACGGCGACGGCACCAGCAGCCTGCGGCGAAGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTTCAACCTCTACGGCCGTCTCAACGGAACTCACCTTCTACGAATTGACCTAAATCGGTACAATACCCCTTCAGATTTCTCCACTAAAACCCTCCCTTAAGCCCTTCCGTTCATCCTTCTCCGCCCAATGCTACGCTTCTACCACTCTCCTACTCTCTCAAGAGTCCTCCTCCTCCGGAGGTTTTCCTCCGCTGCCACCGCCACCGCTCCACCCCTTGATTCCGATCCCGAACCTTCATTTTCGTACTTGGAGGGTTTTCCGAAGCCAGATCCGAAGTACGCCGAGACAATCCTCGCCATTCCGCGCTCCATCTCCGGAAAGAACATTTCCGCTAAAGAGCGCAAGGTTGGCCGCGTTCCAAGCATCGTGTTCGAGCAAGAGGACGGTCAGCATGGCGGAAATAAGCGTCTCATATCTGTACGGACTAATCAAATTAGGAAGCTTGTAAATCATCTAGGTCGCTCTTTCTTCCTCTCCAGGCTTTTTGATCTCGAAGTTCGGTCCGAGTTCGAATCCGGGGATATTGTTGAGAAGGTTCGGGTCTTACCTCGGAAGATTCATCTTCATGCGGGAACAGATGCACCACTTAATGTTACTTTCATAAGGGCACCTTCACACGCTTTATTAAAAGTTGATGTACCTCTTGTTTTCCGAGGGGAAGATGTATGCCCTGGATTGAGGAAAGGTACTGCTGCAAGACTAAGATCTTATTTGAATACGATTAAGAGGACAGTTAAATACCTTTGCCCTGCTGATATTGTTCCTCCATATATCGATGTTGATCTTAGCGAGTTAGATGTTGGGCAAAAGTTGGTTACGGGTGACCTCAAGGTTCATCCTGCGTTAAAGCTTCTTCGGTCAAAGGACGAGCCTGTTTGTAAGATTGCAGGAGCCCGAGCTTCCGATCAACAAAGGAAATCAAAGTAACTCTGGACTATCAATATCTTAGTTGCTTCGACATTAAAGCTTCTTCTGTTAAAGAAGACAATGTTTGTAAGATTATGGGATCCAGGATTTCCTGATCAGCCAAGAAATCTTAATAATCCCTCCAGATTTTGATCACCGTGGGTTTTAAATTTTTTCTCCCAATACTTTAGAAAGCAAAGTACGTTGTTTGTTGTTGGTTCACTAGCATTTATTTGATCTCTCTGTTCATGGAATGGCTTGAACTCTGATGAGCAAGAATATTGTGGTAACTTTTTAGAGGGAGTTTTTAGCTTAATTGGAGGAGGCATTTGTAACATATTATACAATATTTCCTTGAAATTGGTTTCCCATTGCATTGGTTAATGTTATTCAAGGGGCAAATGCTATTGGTTCCTAAATTTTAAAGAGCACTTGGCTGGG

Coding sequence (CDS)

ATGCTACGCTTCTACCACTCTCCTACTCTCTCAAGAGTCCTCCTCCTCCGGAGGTTTTCCTCCGCTGCCACCGCCACCGCTCCACCCCTTGATTCCGATCCCGAACCTTCATTTTCGTACTTGGAGGGTTTTCCGAAGCCAGATCCGAAGTACGCCGAGACAATCCTCGCCATTCCGCGCTCCATCTCCGGAAAGAACATTTCCGCTAAAGAGCGCAAGGTTGGCCGCGTTCCAAGCATCGTGTTCGAGCAAGAGGACGGTCAGCATGGCGGAAATAAGCGTCTCATATCTGTACGGACTAATCAAATTAGGAAGCTTGTAAATCATCTAGGTCGCTCTTTCTTCCTCTCCAGGCTTTTTGATCTCGAAGTTCGGTCCGAGTTCGAATCCGGGGATATTGTTGAGAAGGTTCGGGTCTTACCTCGGAAGATTCATCTTCATGCGGGAACAGATGCACCACTTAATGTTACTTTCATAAGGGCACCTTCACACGCTTTATTAAAAGTTGATGTACCTCTTGTTTTCCGAGGGGAAGATGTATGCCCTGGATTGAGGAAAGGTACTGCTGCAAGACTAAGATCTTATTTGAATACGATTAAGAGGACAGTTAAATACCTTTGCCCTGCTGATATTGTTCCTCCATATATCGATGTTGATCTTAGCGAGTTAGATGTTGGGCAAAAGTTGGTTACGGGTGACCTCAAGGTTCATCCTGCGTTAAAGCTTCTTCGGTCAAAGGACGAGCCTGTTTGTAAGATTGCAGGAGCCCGAGCTTCCGATCAACAAAGGAAATCAAAGTAA

Homology

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BLAST of CmoCh06G009270 vs. Swiss-Prot
Match: RL25_RHOPB (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplY PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.6e-18
Identity = 58/192 (30.21%), Postives = 97/192 (50.52%), Query Frame = 1


Query: 57  AIPRSISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHL-GRSFF 116
           A  R   GK  +  ER+ GRVP +++       G NK  +++  +        L GR  F
Sbjct: 9   ATARPAGGKGAARAERRAGRVPGVIY-------GDNKPPVTISVDDTELRARILAGR--F 68

Query: 117 LSRLFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVF 176
           L+ +FD+E+  +        K RV+PR  HL    D P++V F+R    AL++V VPL  
Sbjct: 69  LTTIFDVELDGQ--------KHRVIPRDFHLDPVRDFPIHVDFLRLGEGALIRVSVPLHL 128

Query: 177 RGEDVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLK 236
           +  +  PG+++G        +N +  TV+    A+ +P +I+ D+S+LD+G  L   D+ 
Sbjct: 129 KNAEGAPGVKRG------GTVNIVTHTVELEAEAESIPQFIEADVSQLDIGSSLHLSDVV 177

Query: 237 VHPALKLLRSKD 248
           +   +K L  +D
Sbjct: 189 LPKGVKTLSRED 177

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BLAST of CmoCh06G009270 vs. Swiss-Prot
Match: RL25_RHOP2 (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplY PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-17
Identity = 61/193 (31.61%), Postives = 96/193 (49.74%), Query Frame = 1


Query: 57  AIPRSISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRL--ISVRTNQIRKLVNHLGRSF 116
           A  R  SGK  +  ER+ GRVP +++       G NK    ISV    +R  +   GR  
Sbjct: 9   ATARPKSGKGAARAERRAGRVPGVIY-------GDNKPPLPISVEDKDLRLRIQ-AGR-- 68

Query: 117 FLSRLFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLV 176
           FL+ +FD+ +  +        K RV+PR  HL    D P++V F+R    A +++ VPL 
Sbjct: 69  FLTTIFDVVLDGQ--------KHRVIPRDYHLDPVKDFPVHVDFLRLGEGATIRISVPLH 128

Query: 177 FRGEDVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDL 236
            +G +  PG+++G         N +  TV    PAD +P +I+ D+S LD+G  L   D+
Sbjct: 129 LKGLESAPGVKRG------GTFNIVTHTVDLEAPADAIPQFIEADVSTLDIGVSLHLSDI 177

Query: 237 KVHPALKLLRSKD 248
            +   +K +  +D
Sbjct: 189 ALPKGVKSVSRED 177

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BLAST of CmoCh06G009270 vs. Swiss-Prot
Match: RL25_RHOPT (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplY PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-17
Identity = 59/191 (30.89%), Postives = 97/191 (50.79%), Query Frame = 1


Query: 57  AIPRSISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFL 116
           A  R  SGK  +  ER+ GRVP +++         +   ISV   ++R  +   GR  FL
Sbjct: 9   ATARPKSGKGAARAERRAGRVPGVIYGDNQ-----SPLPISVEEKELRLRIL-AGR--FL 68

Query: 117 SRLFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFR 176
           + +FD+ +  +        K RV+PR  HL    D P++V F+R  + A ++V VPL  +
Sbjct: 69  TTVFDVVLDGK--------KHRVIPRDYHLDPVRDFPIHVDFLRLGAGATIRVSVPLHLK 128

Query: 177 GEDVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKV 236
           G +V PG+++G         N +  TV+   PA+ +P +I+ D+S LD+G  L   D+ +
Sbjct: 129 GLEVAPGVKRG------GTFNIVTHTVELEAPAENIPQFIEADVSTLDIGVSLHLSDIAL 177

Query: 237 HPALKLLRSKD 248
              +K +   D
Sbjct: 189 PTGVKSVSRDD 177

[Close]

BLAST of CmoCh06G009270 vs. Swiss-Prot
Match: RL25_RHOPA (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=rplY PE=1 SV=3)

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-17
Identity = 59/191 (30.89%), Postives = 97/191 (50.79%), Query Frame = 1


Query: 57  AIPRSISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFL 116
           A  R  SGK  +  ER+ GRVP +++         +   ISV   ++R  +   GR  FL
Sbjct: 9   ATARPKSGKGAARAERRAGRVPGVIYGDNQ-----SPLPISVEEKELRLRIL-AGR--FL 68

Query: 117 SRLFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFR 176
           + +FD+ +  +        K RV+PR  HL    D P++V F+R  + A ++V VPL  +
Sbjct: 69  TTVFDVVLDGK--------KHRVIPRDYHLDPVRDFPIHVDFLRLGAGATIRVSVPLHLK 128

Query: 177 GEDVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKV 236
           G +V PG+++G         N +  TV+   PA+ +P +I+ D+S LD+G  L   D+ +
Sbjct: 129 GLEVAPGVKRG------GTFNIVTHTVELEAPAENIPQFIEADVSTLDIGVSLHLSDIAL 177

Query: 237 HPALKLLRSKD 248
              +K +   D
Sbjct: 189 PTGVKSVSRDD 177

[Close]

BLAST of CmoCh06G009270 vs. Swiss-Prot
Match: RL25_RHOPS (50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplY PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-16
Identity = 62/211 (29.38%), Postives = 106/211 (50.24%), Query Frame = 1


Query: 57  AIPRSISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRL--ISVRTNQIRKLVNHLGRSF 116
           A  R  SGK  +  ER+ GRVP +++       G N+    ISV   ++R  +   GR  
Sbjct: 9   ATARPKSGKGAARAERRAGRVPGVIY-------GDNQPPLPISVEDKELRLRIL-AGR-- 68

Query: 117 FLSRLFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLV 176
           FL+ +FD+ +  +        K RV+PR  HL    D P++V F+R  + A ++V VPL 
Sbjct: 69  FLTTVFDVVLDGK--------KHRVIPRDYHLDPVKDFPIHVDFLRLGAGATIRVSVPLH 128

Query: 177 FRGEDVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDL 236
            +G +  PG+++G         N +  TV    PA+ +P +I+ D+S LD+G  L   D+
Sbjct: 129 LKGLESAPGVKRG------GTFNIVTHTVDLEAPAESIPQFIEADVSTLDIGVSLHLSDI 188

Query: 237 KVHPALKLLRSKDEPVCKIAGARASDQQRKS 266
            +   +K +  +D  +  I      ++++K+
Sbjct: 189 ALPNGVKSVSREDVTLVTIVPPSGFNEEQKA 195

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BLAST of CmoCh06G009270 vs. TrEMBL
Match: A0A0A0LFM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822380 PE=4 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 2.5e-124
Identity = 233/266 (87.59%), Postives = 243/266 (91.35%), Query Frame = 1


Query: 1   MLRFYHSPTLSRVLLLRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPR 60
           MLRFY SPTLSRVLL R  ++ A ATAP  DS  EP FSYLEGFPKPDPKYAETILAIPR
Sbjct: 1   MLRFYRSPTLSRVLLRRYSAATAPATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPR 60

Query: 61  SISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLF 120
           SISGK+ISAKERK GRVPSIVFEQEDGQHGGNKRLISVRTNQI KLV +LGRSFFLSRLF
Sbjct: 61  SISGKSISAKERKAGRVPSIVFEQEDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLF 120

Query: 121 DLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDV 180
           DLEV S+FESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHA+LKVDVPLVFRGEDV
Sbjct: 121 DLEVLSDFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDV 180

Query: 181 CPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPAL 240
           CPGLRKG      SYLNTIKRTVKYLCPADI+PPYIDVDLSELDVGQKLV GDLKVHPAL
Sbjct: 181 CPGLRKG------SYLNTIKRTVKYLCPADIIPPYIDVDLSELDVGQKLVMGDLKVHPAL 240

Query: 241 KLLRSKDEPVCKIAGARASDQQRKSK 267
           KL++SKDEPVCKIAGAR SDQQ+KSK
Sbjct: 241 KLVKSKDEPVCKIAGARVSDQQKKSK 260

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BLAST of CmoCh06G009270 vs. TrEMBL
Match: A0A0D2RPU3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G184300 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 3.9e-109
Identity = 207/254 (81.50%), Postives = 222/254 (87.40%), Query Frame = 1


Query: 12  RVLLLRRFSSAATATAPPLDSDPEPS-FSYLEGFPKPDPKYAETILAIPRSISGKNISAK 71
           + L LR FS AA A    LD    PS  +YLEGFPKPDPKYAETILAIPRS SGKNISAK
Sbjct: 14  KTLHLRFFSQAALA----LDQSSSPSPLTYLEGFPKPDPKYAETILAIPRSTSGKNISAK 73

Query: 72  ERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLFDLEVRSEFES 131
           ERKVGRVPSIVFEQEDGQHGGNKRLISV+TNQIRKLV HLG+SFFLSRLFDLEVRSEF +
Sbjct: 74  ERKVGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVKHLGQSFFLSRLFDLEVRSEFGT 133

Query: 132 GDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDVCPGLRKGTAA 191
           GD++EKVRVLPR +HLHAGTDAPLNVTFIRAPS+ALLKVD+PLVFRGEDVCPG+RKG   
Sbjct: 134 GDLIEKVRVLPRMLHLHAGTDAPLNVTFIRAPSNALLKVDIPLVFRGEDVCPGIRKGL-- 193

Query: 192 RLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPALKLLRSKDEPV 251
               +LNTIKRTVK+LCP DI+PPYIDVDLSELD GQKL+ GDLKVHPALK LRSKDEPV
Sbjct: 194 ----FLNTIKRTVKFLCPPDIIPPYIDVDLSELDGGQKLLVGDLKVHPALKFLRSKDEPV 253

Query: 252 CKIAGARASDQQRK 265
           CKI GAR SDQQRK
Sbjct: 254 CKIMGARVSDQQRK 257

[Close]

BLAST of CmoCh06G009270 vs. TrEMBL
Match: A0A0B0MKD0_GOSAR (50S ribosomal L25 OS=Gossypium arboreum GN=F383_18910 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 3.9e-109
Identity = 207/254 (81.50%), Postives = 222/254 (87.40%), Query Frame = 1


Query: 12  RVLLLRRFSSAATATAPPLDSDPEPS-FSYLEGFPKPDPKYAETILAIPRSISGKNISAK 71
           + L LR FS AA A    LD    PS  +YLEGFPKPDPKYAETILAIPRS SGKNISAK
Sbjct: 14  KTLHLRFFSQAALA----LDQSSSPSPLTYLEGFPKPDPKYAETILAIPRSTSGKNISAK 73

Query: 72  ERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLFDLEVRSEFES 131
           ERKVGRVPSIVFEQEDGQHGGNKRLISV+TNQIRKLV HLG+SFFLSRLFDLEVRSEF +
Sbjct: 74  ERKVGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVKHLGQSFFLSRLFDLEVRSEFGT 133

Query: 132 GDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDVCPGLRKGTAA 191
           GD++EKVRVLPR +HLHAGTDAPLNVTFIRAPS+ALLKVD+PLVFRGEDVCPG+RKG   
Sbjct: 134 GDLIEKVRVLPRMLHLHAGTDAPLNVTFIRAPSNALLKVDIPLVFRGEDVCPGIRKGL-- 193

Query: 192 RLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPALKLLRSKDEPV 251
               +LNTIKRTVK+LCP DI+PPYIDVDLSELD GQKL+ GDLKVHPALK LRSKDEPV
Sbjct: 194 ----FLNTIKRTVKFLCPPDIIPPYIDVDLSELDGGQKLLVGDLKVHPALKFLRSKDEPV 253

Query: 252 CKIAGARASDQQRK 265
           CKI GAR SDQQRK
Sbjct: 254 CKIMGARVSDQQRK 257

[Close]

BLAST of CmoCh06G009270 vs. TrEMBL
Match: D7SPM3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00850 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 2.6e-108
Identity = 209/266 (78.57%), Postives = 225/266 (84.59%), Query Frame = 1


Query: 1   MLRFYHSPTLSRVLLLRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPR 60
           ML   H   L+  L LR FS +A A       +P P  +YLEGFP+PDPK+AE I AIPR
Sbjct: 1   MLIHRHRQILTNALHLRHFSQSAAAAVLQDPLEPPP-LTYLEGFPRPDPKFAEIIRAIPR 60

Query: 61  SISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLF 120
           +ISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLF
Sbjct: 61  TISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLF 120

Query: 121 DLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDV 180
           DLEV  +FES +++EKVRVLPRK+HLHAGTDA LNVTFIRAPSHALLKVDVPLVFRGEDV
Sbjct: 121 DLEVGPDFESNEVIEKVRVLPRKLHLHAGTDAVLNVTFIRAPSHALLKVDVPLVFRGEDV 180

Query: 181 CPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPAL 240
            PGL+KG      +YLNTIKRTVKYLCPADI+PPYIDVDLSELD GQK+V GDLKVHPAL
Sbjct: 181 SPGLKKG------AYLNTIKRTVKYLCPADIIPPYIDVDLSELDAGQKIVMGDLKVHPAL 240

Query: 241 KLLRSKDEPVCKIAGARASDQQRKSK 267
           KLLRSKDEPVCKI G R SD QRKSK
Sbjct: 241 KLLRSKDEPVCKIMGTRVSD-QRKSK 258

[Close]

BLAST of CmoCh06G009270 vs. TrEMBL
Match: D7TV83_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g00620 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 9.7e-108
Identity = 208/266 (78.20%), Postives = 224/266 (84.21%), Query Frame = 1


Query: 1   MLRFYHSPTLSRVLLLRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPR 60
           ML   H   L+  L LR FS +A A       +P P  +YLEGFP+PDPK+AE I AIPR
Sbjct: 1   MLIHRHRQILTNALHLRHFSQSAAAAVLQDPLEPPP-LTYLEGFPRPDPKFAEIIRAIPR 60

Query: 61  SISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLF 120
           +ISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISV+TNQIRKLVNHLGRSFFLSRLF
Sbjct: 61  TISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVKTNQIRKLVNHLGRSFFLSRLF 120

Query: 121 DLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDV 180
           DLEV   FES +++EKVRVLPRK+HLHAGTDA LNVTFIRAPSHALLKVDVPLVFRGEDV
Sbjct: 121 DLEVGPHFESNEVIEKVRVLPRKLHLHAGTDAVLNVTFIRAPSHALLKVDVPLVFRGEDV 180

Query: 181 CPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPAL 240
            PGL+KG      +YLNTIKRTVKYLCPADI+PPYIDVDLSELD GQK+V GDLKVHPAL
Sbjct: 181 SPGLKKG------AYLNTIKRTVKYLCPADIIPPYIDVDLSELDAGQKIVMGDLKVHPAL 240

Query: 241 KLLRSKDEPVCKIAGARASDQQRKSK 267
           KLLRSKDEPVCKI G R SD QRKSK
Sbjct: 241 KLLRSKDEPVCKIMGTRVSD-QRKSK 258

[Close]

BLAST of CmoCh06G009270 vs. TAIR10
Match: AT4G23620.2 (AT4G23620.2 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain)

HSP 1 Score: 360.5 bits (924), Expect = 8.7e-100
Identity = 185/263 (70.34%), Postives = 215/263 (81.75%), Query Frame = 1


Query: 16  LRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPRSISGKNISAKERKVG 75
           LR FS AA A A  LD   E   +YL GFP+PDPK+AETILA+PRS+SGK+ISAKERK G
Sbjct: 16  LRLFSPAANA-ALSLDHIQETQLTYLPGFPRPDPKHAETILAVPRSVSGKSISAKERKAG 75

Query: 76  RVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLFDLEVRSEFESGDIVE 135
           RVPSI+FEQEDGQHGGNKRLISV+TNQIRKLVNHLG SFFLSRLFD+EVR+E  S +++E
Sbjct: 76  RVPSIIFEQEDGQHGGNKRLISVQTNQIRKLVNHLGYSFFLSRLFDVEVRAEIGSDEVIE 135

Query: 136 KVRVLPR-------------KIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDVCP 195
           KVR LPR             KIHLH+GTDAPLNVTFIRAP  ALLKVD+PLVF G+DV P
Sbjct: 136 KVRALPRAVKSPFLSLMKLIKIHLHSGTDAPLNVTFIRAPPGALLKVDIPLVFIGDDVSP 195

Query: 196 GLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPALKL 255
           GL+KG +      LNTIKRTVK+LCPA+I+PPYI+VDLS+LD+GQKLV GDLKVHPALKL
Sbjct: 196 GLKKGAS------LNTIKRTVKFLCPAEIIPPYIEVDLSQLDIGQKLVMGDLKVHPALKL 255

Query: 256 LRSKDEPVCKIAGARASDQQRKS 266
           ++SKDEP+ K+AG R +D Q+KS
Sbjct: 256 IKSKDEPIVKVAGGRVTDTQKKS 271

[Close]

BLAST of CmoCh06G009270 vs. TAIR10
Match: AT5G66860.1 (AT5G66860.1 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain)

HSP 1 Score: 158.7 bits (400), Expect = 5.0e-39
Identity = 90/209 (43.06%), Postives = 130/209 (62.20%), Query Frame = 1


Query: 53  ETILAIPRSISGKNISAKERKVGRVPSIVFEQE----DGQHGG--NKRLISVRTNQIRKL 112
           +TI AIPR  +G+ +SA++R +GR+P++VF Q     D    G   K+L++    QI+ +
Sbjct: 34  QTIQAIPREATGRGVSARDRTIGRIPAVVFPQSLLDTDASKRGVSRKQLLTADKKQIKSI 93

Query: 113 VNHLGRSFFLSRLFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHAL 172
           ++ +G  FF S  F L++R+   S  +VE  RVLP K+H    T   LN+ F+ A     
Sbjct: 94  IDSVGLPFFCSTTFQLQIRAGQGSSTLVESGRVLPLKVHRDEETGKILNLVFVWADDGEK 153

Query: 173 LKVDVPLVFRGEDVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVG 232
           LKVDVP+VF+G D CPGL+KG        L TI+ T+K L PA+ +P  I+VD+S LD+ 
Sbjct: 154 LKVDVPVVFKGLDHCPGLQKG------GNLRTIRSTLKLLGPAEHIPSKIEVDVSNLDIE 213

Query: 233 QKLVTGDLKVHPALKLLRSKDE--PVCKI 254
            K++  D+  HP+LKLL SK+E  PVCKI
Sbjct: 214 DKVLLQDVVFHPSLKLL-SKNETMPVCKI 235

[Close]

BLAST of CmoCh06G009270 vs. NCBI nr
Match: gi|659085215|ref|XP_008443303.1| (PREDICTED: uncharacterized protein LOC103486925 [Cucumis melo])

HSP 1 Score: 456.4 bits (1173), Expect = 3.3e-125
Identity = 237/268 (88.43%), Postives = 246/268 (91.79%), Query Frame = 1


Query: 1   MLRFYHSPTLSRVLLLRRFSSAATATA--PPLDSDPEPSFSYLEGFPKPDPKYAETILAI 60
           MLRFYHSPTLSRVLL RRFSSAATA A  P LDS  EP FSYLEGFPKPDPKYAETILAI
Sbjct: 1   MLRFYHSPTLSRVLLHRRFSSAATAIATDPALDSVSEPLFSYLEGFPKPDPKYAETILAI 60

Query: 61  PRSISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSR 120
           PRS SGK I AKERKVGRVPSI+FEQEDGQHGGNKRLISVRTNQI KLV +LGRSFFLSR
Sbjct: 61  PRSTSGKTICAKERKVGRVPSILFEQEDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSR 120

Query: 121 LFDLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGE 180
           LFDLEV S+FESGDIVEKVRVLPR+IHLHAGTDAPLNVTFIRAPSHA+LKVDVPLVFRGE
Sbjct: 121 LFDLEVLSDFESGDIVEKVRVLPRQIHLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGE 180

Query: 181 DVCPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHP 240
           DVCPGLRKG      SYLNTIKRTVKYLCPADI+PPYIDVDLSELDVGQKLV GDLKVHP
Sbjct: 181 DVCPGLRKG------SYLNTIKRTVKYLCPADIIPPYIDVDLSELDVGQKLVMGDLKVHP 240

Query: 241 ALKLLRSKDEPVCKIAGARASDQQRKSK 267
           ALKL++SKDEPVCKIAGAR SDQQ+KSK
Sbjct: 241 ALKLVKSKDEPVCKIAGARVSDQQKKSK 262

[Close]

BLAST of CmoCh06G009270 vs. NCBI nr
Match: gi|449437765|ref|XP_004136661.1| (PREDICTED: uncharacterized protein LOC101205251 [Cucumis sativus])

HSP 1 Score: 453.0 bits (1164), Expect = 3.7e-124
Identity = 233/266 (87.59%), Postives = 243/266 (91.35%), Query Frame = 1


Query: 1   MLRFYHSPTLSRVLLLRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPR 60
           MLRFY SPTLSRVLL R  ++ A ATAP  DS  EP FSYLEGFPKPDPKYAETILAIPR
Sbjct: 1   MLRFYRSPTLSRVLLRRYSAATAPATAPAFDSVSEPLFSYLEGFPKPDPKYAETILAIPR 60

Query: 61  SISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLF 120
           SISGK+ISAKERK GRVPSIVFEQEDGQHGGNKRLISVRTNQI KLV +LGRSFFLSRLF
Sbjct: 61  SISGKSISAKERKAGRVPSIVFEQEDGQHGGNKRLISVRTNQIVKLVKNLGRSFFLSRLF 120

Query: 121 DLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDV 180
           DLEV S+FESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHA+LKVDVPLVFRGEDV
Sbjct: 121 DLEVLSDFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHAVLKVDVPLVFRGEDV 180

Query: 181 CPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPAL 240
           CPGLRKG      SYLNTIKRTVKYLCPADI+PPYIDVDLSELDVGQKLV GDLKVHPAL
Sbjct: 181 CPGLRKG------SYLNTIKRTVKYLCPADIIPPYIDVDLSELDVGQKLVMGDLKVHPAL 240

Query: 241 KLLRSKDEPVCKIAGARASDQQRKSK 267
           KL++SKDEPVCKIAGAR SDQQ+KSK
Sbjct: 241 KLVKSKDEPVCKIAGARVSDQQKKSK 260

[Close]

BLAST of CmoCh06G009270 vs. NCBI nr
Match: gi|720061089|ref|XP_010275063.1| (PREDICTED: uncharacterized protein LOC104610237 [Nelumbo nucifera])

HSP 1 Score: 402.5 bits (1033), Expect = 5.7e-109
Identity = 207/261 (79.31%), Postives = 228/261 (87.36%), Query Frame = 1


Query: 6   HSPTLSRVLLLRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPRSISGK 65
           H P LSR  +  RF S A A A  +  +PE   +YLE FPKPDPKYAETILAIPRS SGK
Sbjct: 4   HRPLLSRASIQLRFFSQAAAAA--ILHEPEVPLTYLEEFPKPDPKYAETILAIPRSTSGK 63

Query: 66  NISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLFDLEVR 125
           NISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLFDLEVR
Sbjct: 64  NISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLFDLEVR 123

Query: 126 SEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDVCPGLR 185
           SEF+S +I+EKVRVLPR++HLH+GTDA LNVTF+RAPS ALLK++VPLVFRGEDVCPGLR
Sbjct: 124 SEFDSDEIIEKVRVLPRRLHLHSGTDAVLNVTFLRAPSSALLKIEVPLVFRGEDVCPGLR 183

Query: 186 KGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPALKLLRS 245
           KG      +YLNTI+RTV+YLCPADIVPPYIDVDLSELDVGQKLV GDLKVHPAL+L++S
Sbjct: 184 KG------AYLNTIRRTVRYLCPADIVPPYIDVDLSELDVGQKLVMGDLKVHPALRLIQS 243

Query: 246 KDEPVCKIAGARASDQQRKSK 267
           KDEPVCKI GAR  +Q +KSK
Sbjct: 244 KDEPVCKIMGARV-EQPKKSK 255

[Close]

BLAST of CmoCh06G009270 vs. NCBI nr
Match: gi|823144728|ref|XP_012472193.1| (PREDICTED: uncharacterized protein LOC105789373 [Gossypium raimondii])

HSP 1 Score: 402.5 bits (1033), Expect = 5.7e-109
Identity = 207/254 (81.50%), Postives = 222/254 (87.40%), Query Frame = 1


Query: 12  RVLLLRRFSSAATATAPPLDSDPEPS-FSYLEGFPKPDPKYAETILAIPRSISGKNISAK 71
           + L LR FS AA A    LD    PS  +YLEGFPKPDPKYAETILAIPRS SGKNISAK
Sbjct: 14  KTLHLRFFSQAALA----LDQSSSPSPLTYLEGFPKPDPKYAETILAIPRSTSGKNISAK 73

Query: 72  ERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLFDLEVRSEFES 131
           ERKVGRVPSIVFEQEDGQHGGNKRLISV+TNQIRKLV HLG+SFFLSRLFDLEVRSEF +
Sbjct: 74  ERKVGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVKHLGQSFFLSRLFDLEVRSEFGT 133

Query: 132 GDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDVCPGLRKGTAA 191
           GD++EKVRVLPR +HLHAGTDAPLNVTFIRAPS+ALLKVD+PLVFRGEDVCPG+RKG   
Sbjct: 134 GDLIEKVRVLPRMLHLHAGTDAPLNVTFIRAPSNALLKVDIPLVFRGEDVCPGIRKGL-- 193

Query: 192 RLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPALKLLRSKDEPV 251
               +LNTIKRTVK+LCP DI+PPYIDVDLSELD GQKL+ GDLKVHPALK LRSKDEPV
Sbjct: 194 ----FLNTIKRTVKFLCPPDIIPPYIDVDLSELDGGQKLLVGDLKVHPALKFLRSKDEPV 253

Query: 252 CKIAGARASDQQRK 265
           CKI GAR SDQQRK
Sbjct: 254 CKIMGARVSDQQRK 257

[Close]

BLAST of CmoCh06G009270 vs. NCBI nr
Match: gi|359476745|ref|XP_002276349.2| (PREDICTED: uncharacterized protein LOC100242725 [Vitis vinifera])

HSP 1 Score: 399.8 bits (1026), Expect = 3.7e-108
Identity = 209/266 (78.57%), Postives = 225/266 (84.59%), Query Frame = 1


Query: 1   MLRFYHSPTLSRVLLLRRFSSAATATAPPLDSDPEPSFSYLEGFPKPDPKYAETILAIPR 60
           ML   H   L+  L LR FS +A A       +P P  +YLEGFP+PDPK+AE I AIPR
Sbjct: 1   MLIHRHRQILTNALHLRHFSQSAAAAVLQDPLEPPP-LTYLEGFPRPDPKFAEIIRAIPR 60

Query: 61  SISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLF 120
           +ISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLF
Sbjct: 61  TISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRLF 120

Query: 121 DLEVRSEFESGDIVEKVRVLPRKIHLHAGTDAPLNVTFIRAPSHALLKVDVPLVFRGEDV 180
           DLEV  +FES +++EKVRVLPRK+HLHAGTDA LNVTFIRAPSHALLKVDVPLVFRGEDV
Sbjct: 121 DLEVGPDFESNEVIEKVRVLPRKLHLHAGTDAVLNVTFIRAPSHALLKVDVPLVFRGEDV 180

Query: 181 CPGLRKGTAARLRSYLNTIKRTVKYLCPADIVPPYIDVDLSELDVGQKLVTGDLKVHPAL 240
            PGL+KG      +YLNTIKRTVKYLCPADI+PPYIDVDLSELD GQK+V GDLKVHPAL
Sbjct: 181 SPGLKKG------AYLNTIKRTVKYLCPADIIPPYIDVDLSELDAGQKIVMGDLKVHPAL 240

Query: 241 KLLRSKDEPVCKIAGARASDQQRKSK 267
           KLLRSKDEPVCKI G R SD QRKSK
Sbjct: 241 KLLRSKDEPVCKIMGTRVSD-QRKSK 258

The following BLAST results are available for this feature:

BLAST of CmoCh06G009270 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL25_RHOPB	4.6e-18	30.21	50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplY ...	[more]
RL25_RHOP2	1.7e-17	31.61	50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplY PE...	[more]
RL25_RHOPT	3.9e-17	30.89	50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplY P...	[more]
RL25_RHOPA	3.9e-17	30.89	50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CG...	[more]
RL25_RHOPS	1.1e-16	29.38	50S ribosomal protein L25 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplY P...	[more]

BLAST of CmoCh06G009270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFM4_CUCSA	2.5e-124	87.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822380 PE=4 SV=1	[more]
A0A0D2RPU3_GOSRA	3.9e-109	81.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G184300 PE=4 SV=1	[more]
A0A0B0MKD0_GOSAR	3.9e-109	81.50	50S ribosomal L25 OS=Gossypium arboreum GN=F383_18910 PE=4 SV=1	[more]
D7SPM3_VITVI	2.6e-108	78.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00850 PE=4 SV=...	[more]
D7TV83_VITVI	9.7e-108	78.20	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g00620 PE=4 SV=...	[more]

BLAST of CmoCh06G009270 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23620.2	8.7e-100	70.34	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain	[more]
AT5G66860.1	5.0e-39	43.06	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain	[more]

BLAST of CmoCh06G009270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085215\|ref\|XP_008443303.1\|	3.3e-125	88.43	PREDICTED: uncharacterized protein LOC103486925 [Cucumis melo]	[more]
gi\|449437765\|ref\|XP_004136661.1\|	3.7e-124	87.59	PREDICTED: uncharacterized protein LOC101205251 [Cucumis sativus]	[more]
gi\|720061089\|ref\|XP_010275063.1\|	5.7e-109	79.31	PREDICTED: uncharacterized protein LOC104610237 [Nelumbo nucifera]	[more]
gi\|823144728\|ref\|XP_012472193.1\|	5.7e-109	81.50	PREDICTED: uncharacterized protein LOC105789373 [Gossypium raimondii]	[more]
gi\|359476745\|ref\|XP_002276349.2\|	3.7e-108	78.57	PREDICTED: uncharacterized protein LOC100242725 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011035	Ribosomal_L25/Gln-tRNA_synth
IPR020056	Rbsml_L25/Gln-tRNA_synth_N
IPR020057	Ribosomal_L25_b-dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0008097	5S rRNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006418	tRNA aminoacylation for protein translation
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G009270.1	CmoCh06G009270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011035	Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain	unknown	SSF50715	Ribosomal protein L25-like	coord: 60..255 score: 2.27
IPR020056	Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain	GENE3D	G3DSA:2.40.240.10		coord: 55..160 score: 9.9
IPR020057	Ribosomal protein L25, beta domain	GENE3D	G3DSA:2.170.120.20		coord: 167..261 score: 2.7
IPR020057	Ribosomal protein L25, beta domain	PFAM	PF14693	Ribosomal_TL5_C	coord: 168..256 score: 3.7
None	No IPR available	PANTHER	PTHR33284	FAMILY NOT NAMED	coord: 1..264 score: 7.4E
None	No IPR available	PANTHER	PTHR33284:SF1	RIBOSOMAL L25/TL5/CTC N-TERMINAL 5S RRNA BINDING DOMAIN-CONTAINING PROTEIN	coord: 1..264 score: 7.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G009270	Cucsa.338120	Cucumber (Gy14) v1	cgycmoB0944
CmoCh06G009270	CmaCh06G009030	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G009270	Cla002916	Watermelon (97103) v1	cmowmB780
CmoCh06G009270	Csa3G822380	Cucumber (Chinese Long) v2	cmocuB819
CmoCh06G009270	MELO3C009795	Melon (DHL92) v3.5.1	cmomeB745
CmoCh06G009270	ClCG10G015820	Watermelon (Charleston Gray)	cmowcgB726
CmoCh06G009270	CSPI03G38210	Wild cucumber (PI 183967)	cmocpiB827
CmoCh06G009270	Lsi03G015650	Bottle gourd (USVL1VR-Ls)	cmolsiB745
CmoCh06G009270	Cp4.1LG08g06880	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G009270	MELO3C009795.2	Melon (DHL92) v3.6.1	cmomedB847
CmoCh06G009270	CsaV3_3G040630	Cucumber (Chinese Long) v3	cmocucB0965
CmoCh06G009270	Cla97C10G198710	Watermelon (97103) v2	cmowmbB815
CmoCh06G009270	Bhi11G002381	Wax gourd	cmowgoB0991
CmoCh06G009270	Carg26087	Silver-seed gourd	carcmoB0438

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G009270	Cucurbita pepo (Zucchini)	cmocpeB789
CmoCh06G009270	Cucumber (Gy14) v2	cgybcmoB413
CmoCh06G009270	Cucurbita moschata (Rifu)	cmocmoB227
CmoCh06G009270	Cucurbita maxima (Rimu)	cmacmoB274