CmoCh06G008240 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G008240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING/U-box superfamily protein, putative isoform 3
Location	Cmo_Chr06 : 4472926 .. 4475123 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCAAAGACTCTCCCTTTCTCTTTACCTCTCCACCATGGAAATCTCAGCCCTCTTCTTCATCATCTTCTTCCTCCTCTCACCCATCTCCATTAAAGCTCAAACAACAACAACTCATTGCAGCCATGGCAGCCCATCAATCCATCTCCCTTTCACCTTCAACCTTTCATGTTCATCAAACACAACAAGAATCCACTTCAAATCCTACGATTCTCTATCAATCAAATCCATTTCCTACGACCAAAAGCGGCTCGATCTTATAGACCTCAATGGTTGCGTTCACGGCGCGTTTCTCAAACTAAACCTCACCCTCACTCCATTTCGATACTTCTACGTCGTTCGAGATTACAAATACCTCAATTGCACGTCGAAATTGTCGTCGCCGTCGCCCCCGATACCGTGCTTGAGCCGACCTCGAGATTACTATGTATATGTGGTGAGGGAAATGGAAGAAACACCAAGGTTTTGCAAGGAAGTGAAGAAAGTGAAGATCCCATTTGAGTATAGCCCTTATCTTGATGATGGGTCTTTTGGACTCTCATTAAGTTGGGGAGCTAATGATGATGAAGGAAGAACAGAGTCTGAAAGAGGGTGTCTTTATAAAGCACCTAATTATGAAGGTAACATTCCATTCTTTCCTTCTTTAGGTCACTAACTAAAAAGAACAAAAAGGAAAAGAATCTTTTTTTTTTCTTTTCTTTTCTTTATGTTTAATTCAATTAACTTTTGATTTTTTTTTCATTAATTGCTTGTATTTTGGGTTCTTTTGCTTAATACTCTTTTAAAAAAATTTAAACTTTGGGTTATTTGCATTTTAGTCCTTTAAATTTTCGAAATTATTTTATTTTGGTTCGTAAATTTTTTAGTTTGTTTCGTGTAGGTTCATATTTTTCATTATATCTATTTTTTTCTAAAATATTAAAAAAATTAATCATTTTGAATTATTAAGTTATATTAAATGATAAAATAATAGAAAAAAAATAAATCAATTTTTTAAATTAAAGAGTTAAATTAAGAAACGACTTTTTATATATATATATATATATATATATATATATATATATATAGATTAAATGATAAAATAATAGAAAAATAAATAATCAATTTTTAAATTTAAAGAGTTAAATTAAAATAGATATTTTAAAATTAAGAAACCTCTTATATATATATATAGATATAGATATAGATATATTAAATGATAAAATAATAGAAAAAATAAATAATCAATTTTTTAAAATTAAAGAGTTAAATTAAAATAGATATTTTGAAATTAAGAAACGACTTTTATAAAAATTTGTAGACTTAAATAGACATTTTAAAATAATTCAAAGCTTTAAAAAAATTGTTTTTTTTTTCTTTTCTGTTAATGAATATAAGAATAATTTCTAATTAATTTATAAATTATTGTGAGGTCCTAAATAAAAATTATTTCTTAGAAACCCCTTTACTAAAATAAATTGACCAAGTAGTCCCCAGAGAATAATTTCAAATGACCCCTACAAATTTCTTTTTTTAAAATAAATACCCACTTTTTGTAAAAAAAAATAAAAACTGTGTTTGAATATTCAAAGTTGTTTAATGCAATATCATTAATTGGGTCAAAGGTTCATTGATTTTAACCTTTAAACTTCATTTTCTAGAATAATTATATATACATAAATAAATAAATATTTTTAGTCCATCATTTAAATGTTATTGAGTCACCAAATTAAAATAATAATAATAATACTTTATATCTACAAAGAATGTTTTGCTTCAATTTTAAATAAACTTAGGTTTATCCCAAGTTTATATAACCTGTTTTTAAAATAATTATAATATTATGAAAAAGGAAATTAAGTTTATTTTAATTTGTATTTGTATTTTTATTTTTGTGCAGTACTCGGTGTTATCTTACTTGCAGCTATGGTGGTAATATCATCGATGGTGATCATAAAGATTTGCCACTCAAAAAAACATAAAATTTTGAAGGAAGAAGTTCAGAAAAAGGTGTTTGAGCATCCGTATGAAGCACTAAAGCCTGGATCAGATGAAGTTTCCGTTTGAATTTTTGATCGAAAATATACACGAGTTGAACTGTGTTTAAATTAAATAAATACTAATTTTGTTTAATTTTAATTATGAAATTTTTTTAGCAAAGAGTGTTCCTTTGTTTAATTAATCTTTGATGATCATTTTATGTCTTTTTTTTTTTTTTTG

mRNA sequence

TCCCAAAGACTCTCCCTTTCTCTTTACCTCTCCACCATGGAAATCTCAGCCCTCTTCTTCATCATCTTCTTCCTCCTCTCACCCATCTCCATTAAAGCTCAAACAACAACAACTCATTGCAGCCATGGCAGCCCATCAATCCATCTCCCTTTCACCTTCAACCTTTCATGTTCATCAAACACAACAAGAATCCACTTCAAATCCTACGATTCTCTATCAATCAAATCCATTTCCTACGACCAAAAGCGGCTCGATCTTATAGACCTCAATGGTTGCGTTCACGGCGCGTTTCTCAAACTAAACCTCACCCTCACTCCATTTCGATACTTCTACGTCGTTCGAGATTACAAATACCTCAATTGCACGTCGAAATTGTCGTCGCCGTCGCCCCCGATACCGTGCTTGAGCCGACCTCGAGATTACTATGTATATGTGGTGAGGGAAATGGAAGAAACACCAAGGTTTTGCAAGGAAGTGAAGAAAGTGAAGATCCCATTTGAGTATAGCCCTTATCTTGATGATGGGTCTTTTGGACTCTCATTAAGTTGGGGAGCTAATGATGATGAAGGAAGAACAGAGTCTGAAAGAGGGTGTCTTTATAAAGCACCTAATTATGAAGTACTCGGTGTTATCTTACTTGCAGCTATGGTGGTAATATCATCGATGGTGATCATAAAGATTTGCCACTCAAAAAAACATAAAATTTTGAAGGAAGAAGTTCAGAAAAAGGTGTTTGAGCATCCGTATGAAGCACTAAAGCCTGGATCAGATGAAGTTTCCGTTTGAATTTTTGATCGAAAATATACACGAGTTGAACTGTGTTTAAATTAAATAAATACTAATTTTGTTTAATTTTAATTATGAAATTTTTTTAGCAAAGAGTGTTCCTTTGTTTAATTAATCTTTGATGATCATTTTATGTCTTTTTTTTTTTTTTTG

Coding sequence (CDS)

ATGGAAATCTCAGCCCTCTTCTTCATCATCTTCTTCCTCCTCTCACCCATCTCCATTAAAGCTCAAACAACAACAACTCATTGCAGCCATGGCAGCCCATCAATCCATCTCCCTTTCACCTTCAACCTTTCATGTTCATCAAACACAACAAGAATCCACTTCAAATCCTACGATTCTCTATCAATCAAATCCATTTCCTACGACCAAAAGCGGCTCGATCTTATAGACCTCAATGGTTGCGTTCACGGCGCGTTTCTCAAACTAAACCTCACCCTCACTCCATTTCGATACTTCTACGTCGTTCGAGATTACAAATACCTCAATTGCACGTCGAAATTGTCGTCGCCGTCGCCCCCGATACCGTGCTTGAGCCGACCTCGAGATTACTATGTATATGTGGTGAGGGAAATGGAAGAAACACCAAGGTTTTGCAAGGAAGTGAAGAAAGTGAAGATCCCATTTGAGTATAGCCCTTATCTTGATGATGGGTCTTTTGGACTCTCATTAAGTTGGGGAGCTAATGATGATGAAGGAAGAACAGAGTCTGAAAGAGGGTGTCTTTATAAAGCACCTAATTATGAAGTACTCGGTGTTATCTTACTTGCAGCTATGGTGGTAATATCATCGATGGTGATCATAAAGATTTGCCACTCAAAAAAACATAAAATTTTGAAGGAAGAAGTTCAGAAAAAGGTGTTTGAGCATCCGTATGAAGCACTAAAGCCTGGATCAGATGAAGTTTCCGTTTGA

Homology

[Close]

BLAST of CmoCh06G008240 vs. TrEMBL
Match: A0A0A0L6T1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G019320 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.1e-76
Identity = 161/257 (62.65%), Postives = 195/257 (75.88%), Query Frame = 1


Query: 3   ISALFFIIFFLLSPISIKAQ---TTTTHCSHGSPSIHLPFTFNLSCSSNTTRIHFKSYDS 62
           IS L F  FFL+SPIS  +Q   ++TTHC+HG P I  PF FNLSCSSNTTRIHFK+YDS
Sbjct: 4   ISILSFFFFFLISPISTNSQFPSSSTTHCNHGCPKIQFPFDFNLSCSSNTTRIHFKTYDS 63

Query: 63  LSIKSISYDQKRLDLIDLNGCVHGAFLKLNLTLTPFRYFYVVRDYKYLNCTSKL-SSPSP 122
           LSIKSISYDQKRLDL+DLN CVH AFL L+L+LTPFRYFYVV+DY YLNCT++L SS S 
Sbjct: 64  LSIKSISYDQKRLDLLDLNRCVHAAFLNLDLSLTPFRYFYVVKDYLYLNCTTRLVSSSST 123

Query: 123 PIPCLSRPRDYYVYVVREM---EETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGAND 182
            IPCLSR  +YYVYVV+        PRFCKEVK+VKIPFEYSPYLDDGSFGL+L+WG  D
Sbjct: 124 SIPCLSRDGEYYVYVVKPPLMGSGIPRFCKEVKRVKIPFEYSPYLDDGSFGLALTWGF-D 183

Query: 183 DEGRTESERGCLYKAPNYEVLGVILL---AAMVVISSMVII--KICHSKKHKILKEEVQK 242
           D+ +T+S+  C +KA +++V+G+ LL    AMV I +MV++  K   SK     KEE +K
Sbjct: 184 DQTKTKSQIECFFKATSFQVVGISLLVAMVAMVAILTMVMMKKKYYESKNKNYSKEEGEK 243

Query: 243 KVFEH-PYEALKPGSDE 247
           K+FEH  YE LK  S++
Sbjct: 244 KMFEHYSYEPLKTASND 259

[Close]

BLAST of CmoCh06G008240 vs. TrEMBL
Match: A0A067L729_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03445 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.9e-39
Identity = 97/233 (41.63%), Postives = 136/233 (58.37%), Query Frame = 1


Query: 4   SALFFIIFFLLSPISIKAQTTTTHCSHGSPSIHLPF--------------TFNLSCSSNT 63
           +++F+I+FF  S I +   +   +CS  +P IH PF               F LSC  NT
Sbjct: 3   TSVFYILFF--SSIFLSIDSFQVNCSDSAPDIHFPFWISNQHPQHCNNHPAFELSCKENT 62

Query: 64  TRIHFKSYDSLSIKSISYDQKRLDLIDLNGCVHGAFLKLNLTLTPFRYFYVVRDYKYLNC 123
           T I+F  Y  L +KSISYD K++DL D   CVH  FL LNL+ TPFRY+Y+V+DY YLNC
Sbjct: 63  TMIYFPCYGDLGVKSISYDIKKIDLFDPKNCVHQVFLNLNLSQTPFRYYYLVKDYTYLNC 122

Query: 124 TSKLSSPSPPIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSL 183
           ++ LS     IPCLS  + ++VY V      P  C+ VK V +PF YSP+L D SFGL L
Sbjct: 123 STTLSPSFVEIPCLSGSK-HHVYTVDSSFSVPVSCRVVKTVAVPFAYSPFLADNSFGLGL 182

Query: 184 SWGANDDEGRTESERGCLYKAPNYEVLGVILLAAMVVISSMVI--IKICHSKK 221
           +W    D+ +  S    + K+   ++ G +L   + ++++MV+  IKI HSKK
Sbjct: 183 TWSLPGDDYKGFS----IKKSILGDIYGQLLQILLCILAAMVLVGIKIYHSKK 228

[Close]

BLAST of CmoCh06G008240 vs. TrEMBL
Match: W9RPY6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024052 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.8e-37
Identity = 104/254 (40.94%), Postives = 137/254 (53.94%), Query Frame = 1


Query: 6   LFFIIFFLLSPISIKAQTTTTHCSHGSPSIHLPF----------------TFNLSCSSNT 65
           + FI  F  + +   +Q  T  CS+G P IH PF                 F L C  N 
Sbjct: 23  IIFIFTFSFTSLFPHSQAYTK-CSNGGPDIHSPFHIKGQRRVQHPKNDTVNFQLLCKDNP 82

Query: 66  TRIHFKSYDSLSIKSISYDQKRLDLIDLNGCVHGAFLKLNLTLTPFRYFYVVRDYKYLNC 125
           T IHF SY  L +KSISYD K+LDL+D   CVH  FL LNL+ TPF+Y+YVV++Y Y++C
Sbjct: 83  TTIHFPSYGDLVVKSISYDAKKLDLVDPKSCVHEVFLNLNLSNTPFKYYYVVKNYTYISC 142

Query: 126 TSKLSSPSPPIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSL 185
           ++KL      IPCL R  D+YVY V    + P  CK +K V IPF+YSPYL D SFGL L
Sbjct: 143 SAKLKPGFAEIPCL-RGYDHYVYTVEPSMDLPLSCKPIKTVAIPFKYSPYLSDNSFGLGL 202

Query: 186 SW---GANDDEGR-----TESERGCLYKAPNYEVLGVILLAAMVVISSMVIIKICHSKKH 236
           +W   G ND +G+      +SE    ++    +VL    + A  V S+   IK+ +  K 
Sbjct: 203 TWGFLGDNDCDGQQGPCDLQSENVGGFRVGLVQVLINSGILAFAVASAFFAIKMMYYSK- 262

[Close]

BLAST of CmoCh06G008240 vs. TrEMBL
Match: M5WBS7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016300mg PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.1e-35
Identity = 80/181 (44.20%), Postives = 109/181 (60.22%), Query Frame = 1


Query: 4   SALFFIIFFLLSPISIKAQTTTTHCSHGSPSIHLPFT-------------FNLSCSSNTT 63
           +++FFI+FF  + + +  + +  +C+ G+P I  PF              + L C + TT
Sbjct: 3   ASIFFILFF--TSVFLDIEASHGNCTDGTPDIRFPFQLRGHQRQHCGHTGYELDCKNGTT 62

Query: 64  RIHFKSYDSLSIKSISYDQKRLDLIDLNGCVHGAFLKLNLTLTPFRYFYVVRDYKYLNCT 123
            IHF SY  L +KSISYD K+LDLID   CVH  +L LNL+LTPF+Y++ V++Y YLNC+
Sbjct: 63  IIHFPSYGDLVVKSISYDIKKLDLIDPKNCVHEVYLNLNLSLTPFQYYHAVKEYSYLNCS 122

Query: 124 SKLSSPSPPIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLS 172
            + S P   +PCLS   DY+VY V      P  C  VK + IPF YSPYL D SF L L+
Sbjct: 123 VRSSPPLTEVPCLS-GSDYHVYTVDPSLAVPDSCSVVKTIPIPFMYSPYLSDNSFSLGLT 180

[Close]

BLAST of CmoCh06G008240 vs. TrEMBL
Match: V4VL52_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022153mg PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.6e-35
Identity = 82/185 (44.32%), Postives = 108/185 (58.38%), Query Frame = 1


Query: 9   IIFFLLSPISIKAQT-------TTTHCSHGSPSIHLPFT-------------FNLSCSSN 68
           ++FF+L   SI  +T        T  C H +P IH PF              F L C  N
Sbjct: 4   LLFFILFATSIHVKTHASSENCPTVRCGHNTPDIHFPFWVKGQQSQRCGSAGFELVCKEN 63

Query: 69  TTRIHFKSYDSLSIKSISYDQKRLDLIDLNGCVHGAFLKLNLTLTPFRYFYVVRDYKYLN 128
           TT IH  SY +L +KSISY  K+LDLID   CVHG FL LNL+L+ FRY+YVV++Y +LN
Sbjct: 64  TTMIHLPSYGNLIVKSISYKTKKLDLIDPGNCVHGVFLNLNLSLSRFRYYYVVKNYTFLN 123

Query: 129 CTSKLSSPSPPIPCLSRPRDYYVYVVR--EMEETPRFCKEVKKVKIPFEYSPYLDDGSFG 172
           C+++L      +PCLS  R +++Y V+       P  C+ VK + IPF YSPY+ D SFG
Sbjct: 124 CSARLPPSFAEVPCLSGSR-HHIYTVKYSSAVPVPSSCRAVKTLAIPFAYSPYISDNSFG 183

[Close]

BLAST of CmoCh06G008240 vs. NCBI nr
Match: gi|449459050|ref|XP_004147259.1| (PREDICTED: uncharacterized protein LOC101212248 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 1.6e-76
Identity = 161/257 (62.65%), Postives = 195/257 (75.88%), Query Frame = 1


Query: 3   ISALFFIIFFLLSPISIKAQ---TTTTHCSHGSPSIHLPFTFNLSCSSNTTRIHFKSYDS 62
           IS L F  FFL+SPIS  +Q   ++TTHC+HG P I  PF FNLSCSSNTTRIHFK+YDS
Sbjct: 4   ISILSFFFFFLISPISTNSQFPSSSTTHCNHGCPKIQFPFDFNLSCSSNTTRIHFKTYDS 63

Query: 63  LSIKSISYDQKRLDLIDLNGCVHGAFLKLNLTLTPFRYFYVVRDYKYLNCTSKL-SSPSP 122
           LSIKSISYDQKRLDL+DLN CVH AFL L+L+LTPFRYFYVV+DY YLNCT++L SS S 
Sbjct: 64  LSIKSISYDQKRLDLLDLNRCVHAAFLNLDLSLTPFRYFYVVKDYLYLNCTTRLVSSSST 123

Query: 123 PIPCLSRPRDYYVYVVREM---EETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGAND 182
            IPCLSR  +YYVYVV+        PRFCKEVK+VKIPFEYSPYLDDGSFGL+L+WG  D
Sbjct: 124 SIPCLSRDGEYYVYVVKPPLMGSGIPRFCKEVKRVKIPFEYSPYLDDGSFGLALTWGF-D 183

Query: 183 DEGRTESERGCLYKAPNYEVLGVILL---AAMVVISSMVII--KICHSKKHKILKEEVQK 242
           D+ +T+S+  C +KA +++V+G+ LL    AMV I +MV++  K   SK     KEE +K
Sbjct: 184 DQTKTKSQIECFFKATSFQVVGISLLVAMVAMVAILTMVMMKKKYYESKNKNYSKEEGEK 243

Query: 243 KVFEH-PYEALKPGSDE 247
           K+FEH  YE LK  S++
Sbjct: 244 KMFEHYSYEPLKTASND 259

[Close]

BLAST of CmoCh06G008240 vs. NCBI nr
Match: gi|657964366|ref|XP_008373804.1| (PREDICTED: uncharacterized protein LOC103437129 [Malus domestica])

HSP 1 Score: 182.6 bits (462), Expect = 8.6e-43
Identity = 105/252 (41.67%), Postives = 143/252 (56.75%), Query Frame = 1


Query: 6   LFFIIFFLLSPISIKAQT---TTTHCSHGSPSIHLPFT-------------FNLSCSSNT 65
           +FFI+F     +  +A T   TTT CSHG P I  PF              F + CS+N 
Sbjct: 5   IFFILFSTAIFLDTQASTENCTTTKCSHGKPDIRFPFQVRGRHPHHCGLPGFEIDCSNNA 64

Query: 66  TRIHFKSYDSLSIKSISYDQKRLDLIDLNGCVHGAFLKLNLTLTPFRYFYVVRDYKYLNC 125
           + IHF+SY  L IKSISYD +RLDL+D  GCVH  FL LNL+LTPFRY+YV+++Y YLNC
Sbjct: 65  STIHFRSYGELGIKSISYDARRLDLLDPKGCVHEVFLNLNLSLTPFRYYYVLKEYSYLNC 124

Query: 126 TSKLSSPSPPIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSL 185
           +  LS     +PCLS    Y+VY V      P FC+ VK V IPFEYSPYL D SFGL L
Sbjct: 125 SVTLSPSFSQVPCLS-GSGYHVYTVEPSMAVPNFCRVVKTVPIPFEYSPYLSDNSFGLGL 184

Query: 186 SWGANDDEGRTESERGCLYKAPNYEVLGVILLAAMVVISSMVIIKICHSKKHKILKEEVQ 242
           +WG+  ++     E GC   A        IL+  + V++ + + +   ++  +   + +Q
Sbjct: 185 TWGSVGNQ-----ETGCFTMAHVKVACIAILILVLAVLARISMHRSNKTQCRREGDDRIQ 244

[Close]

BLAST of CmoCh06G008240 vs. NCBI nr
Match: gi|694313958|ref|XP_009369044.1| (PREDICTED: RING-H2 finger protein ATL22-like [Pyrus x bretschneideri])

HSP 1 Score: 178.3 bits (451), Expect = 1.6e-41
Identity = 102/252 (40.48%), Postives = 143/252 (56.75%), Query Frame = 1


Query: 6   LFFIIFFLLSPISIKAQT---TTTHCSHGSPSIHLPFT-------------FNLSCSSNT 65
           +FFI+F     +  +A T   TTT C HG P I  PF              F++ CS+N 
Sbjct: 5   IFFILFSTAIFLETQASTENCTTTKCFHGEPDIRFPFQVRGRRPHHCGLPGFDIDCSNNA 64

Query: 66  TRIHFKSYDSLSIKSISYDQKRLDLIDLNGCVHGAFLKLNLTLTPFRYFYVVRDYKYLNC 125
           ++IHF SY  L IKSISYD +RLDL+D  GCVH  FL LNL+LTPFRY+YV+++Y YLNC
Sbjct: 65  SKIHFPSYGELGIKSISYDARRLDLLDPKGCVHEVFLNLNLSLTPFRYYYVLKEYSYLNC 124

Query: 126 TSKLSSPSPPIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSL 185
           +  LS     +PCLS    ++VY V      P FC+ VK V IPFEYSPYL D SFGL L
Sbjct: 125 SVTLSPSFSQVPCLS-GSGFHVYTVEPSMAVPNFCRVVKTVPIPFEYSPYLSDNSFGLGL 184

Query: 186 SWGANDDEGRTESERGCLYKAPNYEVLGVILLAAMVVISSMVIIKICHSKKHKILKEEVQ 242
           +WG+  ++G      GC   A        IL+  + +++ + + +   ++  +   + +Q
Sbjct: 185 TWGSVGNQG-----TGCFTMAHVKVACIAILILVLALLARISMHRSNRTQCRREGDDRIQ 244

[Close]

BLAST of CmoCh06G008240 vs. NCBI nr
Match: gi|645266010|ref|XP_008238425.1| (PREDICTED: putative RING-H2 finger protein ATL21A [Prunus mume])

HSP 1 Score: 171.0 bits (432), Expect = 2.6e-39
Identity = 109/255 (42.75%), Postives = 143/255 (56.08%), Query Frame = 1


Query: 7   FFIIFFLLSPISIKA--QTTTTHCSHGSPSIHLPF-------------TFNLSCSSNT-- 66
           FFI+FF    +  +A  +   T C+HG+P I  PF              + L C++ T  
Sbjct: 6   FFILFFTSIFLETQASDENCATMCTHGTPHIQFPFHVRGQQPEHGGDLIYELDCNNTTKT 65

Query: 67  TRIHFKSYDSLSIKSISYDQKRLDLIDLNGCVHGAFLKLNLTLTPFRYFYVVRDYKYLNC 126
           T IHF SY  L +KSISYD K+LDL+D   CVH  FL LNL+LTPF+Y+YVV+++ YLNC
Sbjct: 66  TTIHFPSYGDLVVKSISYDMKKLDLLDPKSCVHEVFLNLNLSLTPFQYYYVVKEHSYLNC 125

Query: 127 TSKLSSPSPPIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSL 186
           + +LS     IPCLS   DY+VY V      P  C+ VK V IPF YSPYL D SFGL L
Sbjct: 126 SVRLSPSFSEIPCLS-GSDYHVYTVPPSLVVPNSCRVVKTVPIPFGYSPYLGDNSFGLGL 185

Query: 187 SWGANDDEGRTESERGCLYKAPNYEVLGVILLAAMVVISSMVIIKICHSKKHKIL---KE 242
           +WG +D +G  E+E  C   A    V   I + A   +     +KIC SKK + L   K 
Sbjct: 186 TWG-SDGDGEQETE--CFTMAHVKVVCIAIFIFAAAALRK---LKICRSKKLQHLIEGKN 245

[Close]

BLAST of CmoCh06G008240 vs. NCBI nr
Match: gi|802582383|ref|XP_012070050.1| (PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas])

HSP 1 Score: 169.1 bits (427), Expect = 9.9e-39
Identity = 97/233 (41.63%), Postives = 136/233 (58.37%), Query Frame = 1


Query: 4   SALFFIIFFLLSPISIKAQTTTTHCSHGSPSIHLPF--------------TFNLSCSSNT 63
           +++F+I+FF  S I +   +   +CS  +P IH PF               F LSC  NT
Sbjct: 3   TSVFYILFF--SSIFLSIDSFQVNCSDSAPDIHFPFWISNQHPQHCNNHPAFELSCKENT 62

Query: 64  TRIHFKSYDSLSIKSISYDQKRLDLIDLNGCVHGAFLKLNLTLTPFRYFYVVRDYKYLNC 123
           T I+F  Y  L +KSISYD K++DL D   CVH  FL LNL+ TPFRY+Y+V+DY YLNC
Sbjct: 63  TMIYFPCYGDLGVKSISYDIKKIDLFDPKNCVHQVFLNLNLSQTPFRYYYLVKDYTYLNC 122

Query: 124 TSKLSSPSPPIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSL 183
           ++ LS     IPCLS  + ++VY V      P  C+ VK V +PF YSP+L D SFGL L
Sbjct: 123 STTLSPSFVEIPCLSGSK-HHVYTVDSSFSVPVSCRVVKTVAVPFAYSPFLADNSFGLGL 182

Query: 184 SWGANDDEGRTESERGCLYKAPNYEVLGVILLAAMVVISSMVI--IKICHSKK 221
           +W    D+ +  S    + K+   ++ G +L   + ++++MV+  IKI HSKK
Sbjct: 183 TWSLPGDDYKGFS----IKKSILGDIYGQLLQILLCILAAMVLVGIKIYHSKK 228

The following BLAST results are available for this feature:

BLAST of CmoCh06G008240 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G008240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6T1_CUCSA	1.1e-76	62.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G019320 PE=4 SV=1	[more]
A0A067L729_JATCU	6.9e-39	41.63	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03445 PE=4 SV=1	[more]
W9RPY6_9ROSA	3.8e-37	40.94	Uncharacterized protein OS=Morus notabilis GN=L484_024052 PE=4 SV=1	[more]
M5WBS7_PRUPE	2.1e-35	44.20	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016300mg PE=4 S...	[more]
V4VL52_9ROSI	4.6e-35	44.32	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022153mg PE=4 SV=1	[more]

BLAST of CmoCh06G008240 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh06G008240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459050\|ref\|XP_004147259.1\|	1.6e-76	62.65	PREDICTED: uncharacterized protein LOC101212248 [Cucumis sativus]	[more]
gi\|657964366\|ref\|XP_008373804.1\|	8.6e-43	41.67	PREDICTED: uncharacterized protein LOC103437129 [Malus domestica]	[more]
gi\|694313958\|ref\|XP_009369044.1\|	1.6e-41	40.48	PREDICTED: RING-H2 finger protein ATL22-like [Pyrus x bretschneideri]	[more]
gi\|645266010\|ref\|XP_008238425.1\|	2.6e-39	42.75	PREDICTED: putative RING-H2 finger protein ATL21A [Prunus mume]	[more]
gi\|802582383\|ref\|XP_012070050.1\|	9.9e-39	41.63	PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G008240.1	CmoCh06G008240.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G008240	Cucsa.321130	Cucumber (Gy14) v1	cgycmoB0893
CmoCh06G008240	Cla005616	Watermelon (97103) v1	cmowmB784
CmoCh06G008240	Csa3G019320	Cucumber (Chinese Long) v2	cmocuB815
CmoCh06G008240	MELO3C013919	Melon (DHL92) v3.5.1	cmomeB756
CmoCh06G008240	ClCG10G002470	Watermelon (Charleston Gray)	cmowcgB730
CmoCh06G008240	CSPI03G02460	Wild cucumber (PI 183967)	cmocpiB823
CmoCh06G008240	MELO3C013919.2	Melon (DHL92) v3.6.1	cmomedB861
CmoCh06G008240	CsaV3_3G002490	Cucumber (Chinese Long) v3	cmocucB0961
CmoCh06G008240	Cla97C10G187040	Watermelon (97103) v2	cmowmbB819
CmoCh06G008240	Bhi11G000039	Wax gourd	cmowgoB0973
CmoCh06G008240	Carg12032	Silver-seed gourd	carcmoB0770

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G008240	Cucurbita maxima (Rimu)	cmacmoB343
CmoCh06G008240	Cucurbita maxima (Rimu)	cmacmoB623
CmoCh06G008240	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G008240	Wild cucumber (PI 183967)	cmocpiB836
CmoCh06G008240	Melon (DHL92) v3.5.1	cmomeB736
CmoCh06G008240	Watermelon (Charleston Gray)	cmowcgB737
CmoCh06G008240	Cucurbita pepo (Zucchini)	cmocpeB770
CmoCh06G008240	Cucurbita pepo (Zucchini)	cmocpeB792
CmoCh06G008240	Cucurbita pepo (Zucchini)	cmocpeB797
CmoCh06G008240	Bottle gourd (USVL1VR-Ls)	cmolsiB766
CmoCh06G008240	Cucumber (Gy14) v2	cgybcmoB409
CmoCh06G008240	Cucumber (Gy14) v2	cgybcmoB675
CmoCh06G008240	Melon (DHL92) v3.6.1	cmomedB834
CmoCh06G008240	Silver-seed gourd	carcmoB0564
CmoCh06G008240	Silver-seed gourd	carcmoB1059
CmoCh06G008240	Cucumber (Chinese Long) v3	cmocucB0974
CmoCh06G008240	Watermelon (97103) v2	cmowmbB808
CmoCh06G008240	Cucurbita moschata (Rifu)	cmocmoB294
CmoCh06G008240	Cucurbita moschata (Rifu)	cmocmoB438