Carg12032 (gene) Silver-seed gourd

NameCarg12032
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRING-H2 finger protein
LocationCucurbita_argyrosperma_scaffold_037 : 581523 .. 583585 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCCATCTCCATTAAAGCTCAAACAACAACAACTCATTGCAGCCATGGCAGCCCATCAATCCATCTCCCTTTCACCTTCAACCTTTCATGTTCATCAAACACAACAAGAATCCACTTCAAATCCTACGATTCTCTATCAATCAAATCCATTTCCTACGACCAAAAGCGACTCGATCTTATAGACCTCAATGGTTGCGTTCACGGCGCGTTTCTCAAACTAAACCTCACCCTCACTCCATTTCGATACTTCTACATCGTTCGAGATTACAAATACCTCAATTGCACGTCGAAATTGTCGTCGCCATCGCCCCGATACCGTGCTTGAGCCGACCTCGAGATTACTATGTATATGTGGTGAGGGAAATGGAAGAAACACCAAGGTTTTGCAAGGAAGTGAAGAAAGTGAAGATCCCATTTGAGTATAGCCCTTATCTTGATGATGGTTCTTTTGGACTTTCATTAAGTTGGGGACCTAATGAAAGAGGGTGTCTTTATAAAGCACCTAATTATGAAGGTAACATTCCATTCTTTCCTTCTTTTGGTCACTAACTAAAAAGAACAAAAAGGAAAAGAATCTTTTTTTTTTTTTTTTCTTTTCTTTTCTTTATGTTTAATTCAATTAACTTTTGATTTTTTTTCATTAATTGCTTGTATTTTGGGTTCTTTTTCTTAATACCCTTTTAAAAAAAATTTAAACTTTGGGTTATTTGCATTTTAGTCCTTTAAATTTTCGAAATTATTTTATTTTTGTTCGTAAATTTTTTAGTTCATATTTTTCATTATATCTATTTTTTTTTCTAAAATATTAAAAAAATTAATCATTTTGAATTATTAAGTTCGGATAAATTATTAACCATATATATATTAAATGATAAAATAATAGAAAAAAAATAAATCAATTTTTTAAATTAAAGAGTTAAATTAAGAAACGACTTTATATATATATATATATAGATTAAATGATAAAATAATAGAAAAATAAATAATCAATTTTTAAATTTAAAGAGTTAAATTAAAATAGATATTTTAAAATTAAGAAACCTCTTTTATATATATAGATATAGATATATTAAATGATAAAATAATAGAAAAAATAAATAATCAATTTTTTAAAATTAAAGAGTTAAATTAAAATAGATATTTTGAAATTAAGAAACGACTTTTATAAAAATTTGTAGACTTAAATAGACATTTTAAAATAATTCAAAGCTTTAAAAAAACAAAAAATTATTTTTCCCTTAATTTATTCTGTCTTTTTTTTTTTTTCTGTTAATGAATATAAGAATAATTTCTAATTAATTTATAAATTATTGTGAGGTCCTATATAAAAATTATTTCTTAAAAACCCCTTTACTAAAATAAATTGACCAAGTAGTTCCCAGAGAATAATTACAAAATGACCCCTACAAATATATTTTTTTAAAATAAATACCCACTTTTTGTAAAGTAAACTGTTAAACAGTCCCTTGATGATGTCACTTGCAATCATATCCCTGTGGAGCTTTGCTAATTGTTTTATTTATTTATTAAAATGTTATAAAAAAAAAATAAAAACTGTGTTTGAATATTCAAAGTCATTGTTGTTTAATGCATTATTATTAATTGGGTCAAAGGTTCATTGATTTTAGCCTTTAAACTTCATTTTCTAGAATAATTATATAAAAATAAATAAATAAATATTTTGTGTCCATCATTTAAATGTTCGTATTGAGTCACCAAATTAAAATAATAATAATAATAATAATTTATATCTACAAAGAATGTTTTGCTTCAATTTTAAATAAACTTAGGTTTATCCTAAGTTTATATAACCTGTTTTTAAAATAATTATAATATTATGAAAAAGGAAATTAAGTTTATTTTAATTTGTATTTTTTTTTTAATTTTTTGTGCAGTACTCGGTGTTATCTTACTTGTAGCTATGGTGGTAATATCATCGACGGTGATCATAAAGATTTGTCAGTCAAAAAAACAAAAATTTTTGAAGGAAGAAGTTCAGAAAAAGGTGTTTGAGCATCCGTATGAAGTACTAAAGCCTGGATCAGATGAAGTTTCCGTTTGA

mRNA sequence

CACCCATCTCCATTAAAGCTCAAACAACAACAACTCATTGCAGCCATGGCAGCCCATCAATCCATCTCCCTTTCACCTTCAACCTTTCATGTTCATCAAACACAACAAGAATCCACTTCAAATCCTACGATTCTCTATCAATCAAATCCATTTCCTACGACCAAAAGCGACTCGATCTTATAGACCTCAATGGTTGCGTTCACGGCGCGTTTCTCAAACTAAACCTCACCCTCACTCCATTTCGATACTTCTACATCGTTCGAGATTACAAATACCTCAATTGCACGTCGAAATTGTCGTCGCCATCGCCCCGATACCGTGCTTGAGCCGACCTCGAGATTACTATGTATATGTGGTGAGGGAAATGGAAGAAACACCAAGGTTTTGCAAGGAAGTGAAGAAAGTGAAGATCCCATTTGAGTATAGCCCTTATCTTGATGATGGTTCTTTTGGACTTTCATTAAGTTGGGGACCTAATGAAAGAGGGTGTCTTTATAAAGCACCTAATTATGAAGTACTCGGTGTTATCTTACTTGTAGCTATGGTGGTAATATCATCGACGGTGATCATAAAGATTTGTCAGTCAAAAAAACAAAAATTTTTGAAGGAAGAAGTTCAGAAAAAGGTGTTTGAGCATCCGTATGAAGTACTAAAGCCTGGATCAGATGAAGTTTCCGTTTGA

Coding sequence (CDS)

ATGTTCATCAAACACAACAAGAATCCACTTCAAATCCTACGATTCTCTATCAATCAAATCCATTTCCTACGACCAAAAGCGACTCGATCTTATAGACCTCAATGGTTGCGTTCACGGCGCGTTTCTCAAACTAAACCTCACCCTCACTCCATTTCGATACTTCTACATCGTTCGAGATTACAAATACCTCAATTGCACGTCGAAATTGTCGTCGCCATCGCCCCGATACCGTGCTTGAGCCGACCTCGAGATTACTATGTATATGTGGTGAGGGAAATGGAAGAAACACCAAGGTTTTGCAAGGAAGTGAAGAAAGTGAAGATCCCATTTGAGTATAGCCCTTATCTTGATGATGGTTCTTTTGGACTTTCATTAAGTTGGGGACCTAATGAAAGAGGGTGTCTTTATAAAGCACCTAATTATGAAGTACTCGGTGTTATCTTACTTGTAGCTATGGTGGTAATATCATCGACGGTGATCATAAAGATTTGTCAGTCAAAAAAACAAAAATTTTTGAAGGAAGAAGTTCAGAAAAAGGTGTTTGAGCATCCGTATGAAGTACTAAAGCCTGGATCAGATGAAGTTTCCGTTTGA

Protein sequence

MFIKHNKNPLQILRFSINQIHFLRPKATRSYRPQWLRSRRVSQTKPHPHSISILLHRSRLQIPQLHVEIVVAIAPIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGPNERGCLYKAPNYEVLGVILLVAMVVISSTVIIKICQSKKQKFLKEEVQKKVFEHPYEVLKPGSDEVSV
BLAST of Carg12032 vs. NCBI nr
Match: XP_023540101.1 (uncharacterized protein LOC111800580 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.3 bits (599), Expect = 1.7e-58
Identity = 115/123 (93.50%), Postives = 117/123 (95.12%), Query Frame = 0

Query: 75  PIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGPNERGC 134
           PIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGPNERGC
Sbjct: 120 PIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGPNERGC 179

Query: 135 LYKAPNYEVLGVILLVAMVVISSTVIIKICQSKKQKFLKEEVQKKVFEHPYEVLKPGSDE 194
           LYKAPNYEVLGVILLVA+VVISS VIIKIC SKKQK LKEE QKKVFEH YE L+PGSDE
Sbjct: 180 LYKAPNYEVLGVILLVAIVVISSMVIIKICHSKKQKILKEEAQKKVFEHSYEALRPGSDE 239

Query: 195 VSV 198
           VSV
Sbjct: 240 VSV 242

BLAST of Carg12032 vs. NCBI nr
Match: XP_022938488.1 (uncharacterized protein LOC111444707 isoform X1 [Cucurbita moschata])

HSP 1 Score: 228.8 bits (582), Expect = 1.6e-56
Identity = 116/131 (88.55%), Postives = 116/131 (88.55%), Query Frame = 0

Query: 75  PIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGPN---- 134
           PIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWG N    
Sbjct: 119 PIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGANDDEG 178

Query: 135 ----ERGCLYKAPNYEVLGVILLVAMVVISSTVIIKICQSKKQKFLKEEVQKKVFEHPYE 194
               ERGCLYKAPNYEVLGVILL AMVVISS VIIKIC SKK K LKEEVQKKVFEHPYE
Sbjct: 179 RTESERGCLYKAPNYEVLGVILLAAMVVISSMVIIKICHSKKHKILKEEVQKKVFEHPYE 238

Query: 195 VLKPGSDEVSV 198
            LKPGSDEVSV
Sbjct: 239 ALKPGSDEVSV 249

BLAST of Carg12032 vs. NCBI nr
Match: XP_023540102.1 (uncharacterized protein LOC111800580 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.0 bits (580), Expect = 2.8e-56
Identity = 113/123 (91.87%), Postives = 115/123 (93.50%), Query Frame = 0

Query: 75  PIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGPNERGC 134
           PIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGPNERGC
Sbjct: 120 PIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGPNERGC 179

Query: 135 LYKAPNYEVLGVILLVAMVVISSTVIIKICQSKKQKFLKEEVQKKVFEHPYEVLKPGSDE 194
           LYKAPNYE  GVILLVA+VVISS VIIKIC SKKQK LKEE QKKVFEH YE L+PGSDE
Sbjct: 180 LYKAPNYE--GVILLVAIVVISSMVIIKICHSKKQKILKEEAQKKVFEHSYEALRPGSDE 239

Query: 195 VSV 198
           VSV
Sbjct: 240 VSV 240

BLAST of Carg12032 vs. NCBI nr
Match: XP_023005514.1 (uncharacterized protein LOC111498479 isoform X1 [Cucurbita maxima])

HSP 1 Score: 222.2 bits (565), Expect = 1.5e-54
Identity = 112/131 (85.50%), Postives = 115/131 (87.79%), Query Frame = 0

Query: 75  PIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGPN---- 134
           PIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSL+WGPN    
Sbjct: 122 PIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLTWGPNDDEG 181

Query: 135 ----ERGCLYKAPNYEVLGVILLVAMVVISSTVIIKICQSKKQKFLKEEVQKKVFEHPYE 194
               +RGCLYKAPNYEVLGV LLVAMVVIS  VIIKIC SKKQKFLKEE QKKVFEH YE
Sbjct: 182 RTESQRGCLYKAPNYEVLGVSLLVAMVVISLMVIIKICHSKKQKFLKEEAQKKVFEHSYE 241

Query: 195 VLKPGSDEVSV 198
            +KP SDEVSV
Sbjct: 242 AIKPRSDEVSV 252

BLAST of Carg12032 vs. NCBI nr
Match: XP_022938496.1 (uncharacterized protein LOC111444707 isoform X2 [Cucurbita moschata] >XP_022938501.1 uncharacterized protein LOC111444707 isoform X3 [Cucurbita moschata])

HSP 1 Score: 221.5 bits (563), Expect = 2.6e-54
Identity = 114/131 (87.02%), Postives = 114/131 (87.02%), Query Frame = 0

Query: 75  PIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGPN---- 134
           PIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWG N    
Sbjct: 119 PIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGANDDEG 178

Query: 135 ----ERGCLYKAPNYEVLGVILLVAMVVISSTVIIKICQSKKQKFLKEEVQKKVFEHPYE 194
               ERGCLYKAPNYE  GVILL AMVVISS VIIKIC SKK K LKEEVQKKVFEHPYE
Sbjct: 179 RTESERGCLYKAPNYE--GVILLAAMVVISSMVIIKICHSKKHKILKEEVQKKVFEHPYE 238

Query: 195 VLKPGSDEVSV 198
            LKPGSDEVSV
Sbjct: 239 ALKPGSDEVSV 247

BLAST of Carg12032 vs. TrEMBL
Match: tr|A0A0A0L6T1|A0A0A0L6T1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019320 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.5e-23
Identity = 67/135 (49.63%), Postives = 88/135 (65.19%), Query Frame = 0

Query: 76  IPCLSRPRDYYVYVVREM---EETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGPNER 135
           IPCLSR  +YYVYVV+        PRFCKEVK+VKIPFEYSPYLDDGSFGL+L+WG +++
Sbjct: 125 IPCLSRDGEYYVYVVKPPLMGSGIPRFCKEVKRVKIPFEYSPYLDDGSFGLALTWGFDDQ 184

Query: 136 -------GCLYKAPNYEVLGVILLVAMVVISSTVII-----KICQSKKQKFLKEEVQKKV 195
                   C +KA +++V+G+ LLVAM              K  +SK + + KEE +KK+
Sbjct: 185 TKTKSQIECFFKATSFQVVGISLLVAMXXXXXXXXXXXXKKKYYESKNKNYSKEEGEKKM 244

BLAST of Carg12032 vs. TrEMBL
Match: tr|W9RPY6|W9RPY6_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024052 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 0

Query: 74  APIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWG 129
           A IPCL R  D+YVY V    + P  CK +K V IPF+YSPYL D SFGL L+WG
Sbjct: 150 AEIPCL-RGYDHYVYTVEPSMDLPLSCKPIKTVAIPFKYSPYLSDNSFGLGLTWG 203

BLAST of Carg12032 vs. TrEMBL
Match: tr|A0A251P610|A0A251P610_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G063400 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 51/131 (38.93%), Postives = 65/131 (49.62%), Query Frame = 0

Query: 67  VEIVVAIAPIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLS 126
           V +  + + IPCLS   DY+VY V      P  C+ VK V IPF YSPYL D SFGL L+
Sbjct: 126 VRLSPSFSEIPCLS-GSDYHVYTVPPSLAVPNSCRVVKTVPIPFGYSPYLSDNSFGLGLT 185

Query: 127 WG-----PNERGCLYKAPNYEVLGVILLVAMVVISSTVIIKICQSKKQKFL---KEEVQK 186
           WG       E  C   A    V   I + A   +     +KI QSKK + L   K++VQ 
Sbjct: 186 WGSVGDRQQETECFTMAHVKVVCIAIFIFAAAALRK---LKIYQSKKLQHLIEGKDQVQV 245

Query: 187 KVFEHPYEVLK 190
           +     Y+ LK
Sbjct: 246 EKLLGDYKPLK 252

BLAST of Carg12032 vs. TrEMBL
Match: tr|A0A2P4K678|A0A2P4K678_QUESU (Ring-h2 finger protein atl22 OS=Quercus suber OX=58331 GN=CFP56_58601 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 48/138 (34.78%), Postives = 67/138 (48.55%), Query Frame = 0

Query: 72  AIAPIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWG--- 131
           + + IPCLS  + Y+VY V      P  C+ VK V IPF+YSPYL D SFGL LSW    
Sbjct: 132 SFSEIPCLSGSK-YHVYTVEPSLAIPNSCRPVKTVAIPFQYSPYLADNSFGLGLSWDLPG 191

Query: 132 -------------PNERGCLYKAPNYEVLGVILLVAMVVISSTVIIKICQSKKQKFLKEE 191
                         ++ GC   A +  V  + + +  +V+++  II+I  SKK     EE
Sbjct: 192 SEDCEANGGHCGLKDKTGCFNLAHDI-VFSIGIFIFAMVVATVTIIRIYHSKKIHCQDEE 251

BLAST of Carg12032 vs. TrEMBL
Match: tr|A0A2P5CVN2|A0A2P5CVN2_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_271530 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.5e-07
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 76  IPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSW 128
           IPCLS    +YVY V      P+FC +VK + IPF YSPYL D SFGLSL+W
Sbjct: 135 IPCLS-GSGHYVYTVEPSMAVPKFCTKVKTIAIPFGYSPYLADNSFGLSLTW 185

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023540101.11.7e-5893.50uncharacterized protein LOC111800580 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022938488.11.6e-5688.55uncharacterized protein LOC111444707 isoform X1 [Cucurbita moschata][more]
XP_023540102.12.8e-5691.87uncharacterized protein LOC111800580 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023005514.11.5e-5485.50uncharacterized protein LOC111498479 isoform X1 [Cucurbita maxima][more]
XP_022938496.12.6e-5487.02uncharacterized protein LOC111444707 isoform X2 [Cucurbita moschata] >XP_0229385... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L6T1|A0A0A0L6T1_CUCSA4.5e-2349.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019320 PE=4 SV=1[more]
tr|W9RPY6|W9RPY6_9ROSA2.4e-0858.18Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024052 PE=4 SV=1[more]
tr|A0A251P610|A0A251P610_PRUPE2.4e-0838.93Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G063400 PE=4 SV=1[more]
tr|A0A2P4K678|A0A2P4K678_QUESU1.2e-0734.78Ring-h2 finger protein atl22 OS=Quercus suber OX=58331 GN=CFP56_58601 PE=4 SV=1[more]
tr|A0A2P5CVN2|A0A2P5CVN2_9ROSA4.5e-0757.69Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_271530 PE=4 S... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12032-RACarg12032-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR27009FAMILY NOT NAMEDcoord: 72..130
NoneNo IPR availablePANTHERPTHR27009:SF35SUBFAMILY NOT NAMEDcoord: 72..130

The following gene(s) are paralogous to this gene:

None