Carg12032 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CACCCATCTCCATTAAAGCTCAAACAACAACAACTCATTGCAGCCATGGCAGCCCATCAATCCATCTCCCTTTCACCTTCAACCTTTCATGTTCATCAAACACAACAAGAATCCACTTCAAATCCTACGATTCTCTATCAATCAAATCCATTTCCTACGACCAAAAGCGACTCGATCTTATAGACCTCAATGGTTGCGTTCACGGCGCGTTTCTCAAACTAAACCTCACCCTCACTCCATTTCGATACTTCTACATCGTTCGAGATTACAAATACCTCAATTGCACGTCGAAATTGTCGTCGCCATCGCCCCGATACCGTGCTTGAGCCGACCTCGAGATTACTATGTATATGTGGTGAGGGAAATGGAAGAAACACCAAGGTTTTGCAAGGAAGTGAAGAAAGTGAAGATCCCATTTGAGTATAGCCCTTATCTTGATGATGGTTCTTTTGGACTTTCATTAAGTTGGGGACCTAATGAAAGAGGGTGTCTTTATAAAGCACCTAATTATGAAGGTAACATTCCATTCTTTCCTTCTTTTGGTCACTAACTAAAAAGAACAAAAAGGAAAAGAATCTTTTTTTTTTTTTTTTCTTTTCTTTTCTTTATGTTTAATTCAATTAACTTTTGATTTTTTTTCATTAATTGCTTGTATTTTGGGTTCTTTTTCTTAATACCCTTTTAAAAAAAATTTAAACTTTGGGTTATTTGCATTTTAGTCCTTTAAATTTTCGAAATTATTTTATTTTTGTTCGTAAATTTTTTAGTTCATATTTTTCATTATATCTATTTTTTTTTCTAAAATATTAAAAAAATTAATCATTTTGAATTATTAAGTTCGGATAAATTATTAACCATATATATATTAAATGATAAAATAATAGAAAAAAAATAAATCAATTTTTTAAATTAAAGAGTTAAATTAAGAAACGACTTTATATATATATATATATAGATTAAATGATAAAATAATAGAAAAATAAATAATCAATTTTTAAATTTAAAGAGTTAAATTAAAATAGATATTTTAAAATTAAGAAACCTCTTTTATATATATAGATATAGATATATTAAATGATAAAATAATAGAAAAAATAAATAATCAATTTTTTAAAATTAAAGAGTTAAATTAAAATAGATATTTTGAAATTAAGAAACGACTTTTATAAAAATTTGTAGACTTAAATAGACATTTTAAAATAATTCAAAGCTTTAAAAAAACAAAAAATTATTTTTCCCTTAATTTATTCTGTCTTTTTTTTTTTTTCTGTTAATGAATATAAGAATAATTTCTAATTAATTTATAAATTATTGTGAGGTCCTATATAAAAATTATTTCTTAAAAACCCCTTTACTAAAATAAATTGACCAAGTAGTTCCCAGAGAATAATTACAAAATGACCCCTACAAATATATTTTTTTAAAATAAATACCCACTTTTTGTAAAGTAAACTGTTAAACAGTCCCTTGATGATGTCACTTGCAATCATATCCCTGTGGAGCTTTGCTAATTGTTTTATTTATTTATTAAAATGTTATAAAAAAAAAATAAAAACTGTGTTTGAATATTCAAAGTCATTGTTGTTTAATGCATTATTATTAATTGGGTCAAAGGTTCATTGATTTTAGCCTTTAAACTTCATTTTCTAGAATAATTATATAAAAATAAATAAATAAATATTTTGTGTCCATCATTTAAATGTTCGTATTGAGTCACCAAATTAAAATAATAATAATAATAATAATTTATATCTACAAAGAATGTTTTGCTTCAATTTTAAATAAACTTAGGTTTATCCTAAGTTTATATAACCTGTTTTTAAAATAATTATAATATTATGAAAAAGGAAATTAAGTTTATTTTAATTTGTATTTTTTTTTTAATTTTTTGTGCAGTACTCGGTGTTATCTTACTTGTAGCTATGGTGGTAATATCATCGACGGTGATCATAAAGATTTGTCAGTCAAAAAAACAAAAATTTTTGAAGGAAGAAGTTCAGAAAAAGGTGTTTGAGCATCCGTATGAAGTACTAAAGCCTGGATCAGATGAAGTTTCCGTTTGA CACCCATCTCCATTAAAGCTCAAACAACAACAACTCATTGCAGCCATGGCAGCCCATCAATCCATCTCCCTTTCACCTTCAACCTTTCATGTTCATCAAACACAACAAGAATCCACTTCAAATCCTACGATTCTCTATCAATCAAATCCATTTCCTACGACCAAAAGCGACTCGATCTTATAGACCTCAATGGTTGCGTTCACGGCGCGTTTCTCAAACTAAACCTCACCCTCACTCCATTTCGATACTTCTACATCGTTCGAGATTACAAATACCTCAATTGCACGTCGAAATTGTCGTCGCCATCGCCCCGATACCGTGCTTGAGCCGACCTCGAGATTACTATGTATATGTGGTGAGGGAAATGGAAGAAACACCAAGGTTTTGCAAGGAAGTGAAGAAAGTGAAGATCCCATTTGAGTATAGCCCTTATCTTGATGATGGTTCTTTTGGACTTTCATTAAGTTGGGGACCTAATGAAAGAGGGTGTCTTTATAAAGCACCTAATTATGAAGTACTCGGTGTTATCTTACTTGTAGCTATGGTGGTAATATCATCGACGGTGATCATAAAGATTTGTCAGTCAAAAAAACAAAAATTTTTGAAGGAAGAAGTTCAGAAAAAGGTGTTTGAGCATCCGTATGAAGTACTAAAGCCTGGATCAGATGAAGTTTCCGTTTGA ATGTTCATCAAACACAACAAGAATCCACTTCAAATCCTACGATTCTCTATCAATCAAATCCATTTCCTACGACCAAAAGCGACTCGATCTTATAGACCTCAATGGTTGCGTTCACGGCGCGTTTCTCAAACTAAACCTCACCCTCACTCCATTTCGATACTTCTACATCGTTCGAGATTACAAATACCTCAATTGCACGTCGAAATTGTCGTCGCCATCGCCCCGATACCGTGCTTGAGCCGACCTCGAGATTACTATGTATATGTGGTGAGGGAAATGGAAGAAACACCAAGGTTTTGCAAGGAAGTGAAGAAAGTGAAGATCCCATTTGAGTATAGCCCTTATCTTGATGATGGTTCTTTTGGACTTTCATTAAGTTGGGGACCTAATGAAAGAGGGTGTCTTTATAAAGCACCTAATTATGAAGTACTCGGTGTTATCTTACTTGTAGCTATGGTGGTAATATCATCGACGGTGATCATAAAGATTTGTCAGTCAAAAAAACAAAAATTTTTGAAGGAAGAAGTTCAGAAAAAGGTGTTTGAGCATCCGTATGAAGTACTAAAGCCTGGATCAGATGAAGTTTCCGTTTGA MFIKHNKNPLQILRFSINQIHFLRPKATRSYRPQWLRSRRVSQTKPHPHSISILLHRSRLQIPQLHVEIVVAIAPIPCLSRPRDYYVYVVREMEETPRFCKEVKKVKIPFEYSPYLDDGSFGLSLSWGPNERGCLYKAPNYEVLGVILLVAMVVISSTVIIKICQSKKQKFLKEEVQKKVFEHPYEVLKPGSDEVSV
BLAST of Carg12032 vs. NCBI nr
Match: XP_023540101.1 (uncharacterized protein LOC111800580 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 235.3 bits (599), Expect = 1.7e-58 Identity = 115/123 (93.50%), Postives = 117/123 (95.12%), Query Frame = 0
BLAST of Carg12032 vs. NCBI nr
Match: XP_022938488.1 (uncharacterized protein LOC111444707 isoform X1 [Cucurbita moschata]) HSP 1 Score: 228.8 bits (582), Expect = 1.6e-56 Identity = 116/131 (88.55%), Postives = 116/131 (88.55%), Query Frame = 0
BLAST of Carg12032 vs. NCBI nr
Match: XP_023540102.1 (uncharacterized protein LOC111800580 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 228.0 bits (580), Expect = 2.8e-56 Identity = 113/123 (91.87%), Postives = 115/123 (93.50%), Query Frame = 0
BLAST of Carg12032 vs. NCBI nr
Match: XP_023005514.1 (uncharacterized protein LOC111498479 isoform X1 [Cucurbita maxima]) HSP 1 Score: 222.2 bits (565), Expect = 1.5e-54 Identity = 112/131 (85.50%), Postives = 115/131 (87.79%), Query Frame = 0
BLAST of Carg12032 vs. NCBI nr
Match: XP_022938496.1 (uncharacterized protein LOC111444707 isoform X2 [Cucurbita moschata] >XP_022938501.1 uncharacterized protein LOC111444707 isoform X3 [Cucurbita moschata]) HSP 1 Score: 221.5 bits (563), Expect = 2.6e-54 Identity = 114/131 (87.02%), Postives = 114/131 (87.02%), Query Frame = 0
BLAST of Carg12032 vs. TrEMBL
Match: tr|A0A0A0L6T1|A0A0A0L6T1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019320 PE=4 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 4.5e-23 Identity = 67/135 (49.63%), Postives = 88/135 (65.19%), Query Frame = 0
BLAST of Carg12032 vs. TrEMBL
Match: tr|W9RPY6|W9RPY6_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_024052 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08 Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 0
BLAST of Carg12032 vs. TrEMBL
Match: tr|A0A251P610|A0A251P610_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G063400 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08 Identity = 51/131 (38.93%), Postives = 65/131 (49.62%), Query Frame = 0
BLAST of Carg12032 vs. TrEMBL
Match: tr|A0A2P4K678|A0A2P4K678_QUESU (Ring-h2 finger protein atl22 OS=Quercus suber OX=58331 GN=CFP56_58601 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07 Identity = 48/138 (34.78%), Postives = 67/138 (48.55%), Query Frame = 0
BLAST of Carg12032 vs. TrEMBL
Match: tr|A0A2P5CVN2|A0A2P5CVN2_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_271530 PE=4 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 4.5e-07 Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |