CmoCh06G006640 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G006640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Mitochondrial import inner membrane translocase subunit tim22
Location	Cmo_Chr06 : 3363258 .. 3367318 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGACAGGTGTGAAAAAAGGCTAAATAATCGCTATCCGTTCGTCAAAGAAGAACAGAGAGCTTCGAATTCTGCACTCGGAAGATTGAGATTGAAAAAGGTGTTTAGCAGAGCAGAGTGAGGAAGATAGTGAATCGCAGCCATGGCGGATTCTTCAAGGGACGAGTCATCTGACGCTGAGTTCGAAACCAATCCTTCAGACAGCCCTAATTCCTCCGACGCCATAGTTCCCTCCTCTTTTGGTGGCCCTGCTCTTTGTCTTTTCCGGTTTGCTGGCGACTCCGCTGCCGGAGCCTTCATGGGCTCCATTTTCGGCTACGGTCTCTTTCTTTCTCTTTGTGTTAAGAATGTCTCCTTTGTTTTTCGTTTTACATGTTTGATTGCTGGTTTAGTTTTTGAAATTGGGATTAGCTATGAGAATAAACGAGTTAGTAACCATTGATAGCTAATGCGGTTTAGTATTCTGCTTTAACAGACTAATTATAGCAATAGATGGAGAATAAACGCCTAATTTGCTTAACATAGGAAGCCAAGCTGGAGCAGTAAGGGTTTAGTAATCATATTAGCAAGTTGAAACTGGCTCCAAACTGGATAGAGCTTAATAAAATCATTCAAAGTAAGAGCACTAAAACAGGACGAGATCAAGGTAAGTTAAGATCACCTAGTAGTATCAGTATGCGTACGATTGGACTTCCAAGAAACCATGGAATTCCAATCATTGGATTGCAAGACTAGAGCCAATCAACATCCACAAAAGCTTTTATGAACAACCATTAGATGAGTTGTGAGTGGACGAGCAGTAATACAATGAACAGGGGAAGATATATTTGGCACAAATGTGTGCATATGGTTGTTGATTAGAGAATAATGAATTGAAGAATCATCAACACTTAGGATCATCGTTGGGTACATCGAACTTCAAATTTTTATTACTAGGTATAAAAATTGGGTTAGATCTGCCGGACGAAGCATAACTCAATTGGTTAAGGCATATATTGTTTACTAATAAGTCATAGGTTTGAATCGTTGAGACACAAGGAAAAACAAAAGGGAAAAAAATTAACTTAAGTTGAAGAAGCCAATATTCTCCAATAGTTGCAAACAGTAGTTTCCTCAAAGAAAGGAAGATGCGACGAGTCTTAAACAACTCCGAGCTGAGAAAATAACCGAAAAAACCAATATCTTTAAGCTGAAACTAACTATGGAGCAAAAGTTTAACCATATAATAGTATCTTGACGAGGACCGCTTACGGTAATATCATCAGTGTACACCGACAATGCTACATAGGAGCAAACTGAACCATGAGTTAGCAAGGACTAATCGGCCGTGGACTAATAAAAAACAAGGGAAAGTAGTACATGAGAAAGAGGCGTATATACCTCCTCAAACATGACTAACTTCGAGTTGTCCAGGTTTCACTAACGAAATTGATTGGAAAACGTGTTCAGGAAGAGCAACAAGCATGTTTAGAATGGTTCTCTAAGATTGAAAAAGTGTTATAGAATACCTGATATGGCTATTTGCACAAGAATCAATTATCGATGTACTAATCGAGTCTCATTTAGAAACACAGTTAAAAATATGATCTGCTATATGAGATATAGAAGAACTAACCATATCTTCATTATTGAAGGAAGATAATGATAGATGAGTCTGAAACGGGTGAGTTCCAGTTTATCGAATAGGAAATATGAGTAAATCGGGGAAGATTTGCGAGCTTCCTTCTCTCCCGAGACTCACCCTAGTCCAATACTACCAAAAAAAATGTACTAATGGTGTTTCCTACTCCTAATATGTCAGCTGTCCAAATAACTCACATTCCATGGGACTCACACTACATTATGCATAATACTAGTCAGGAGGGCCACCCCTCACTTCATTACTGAAAAACATTTTCAGAATTGGGGTCTATCAGAAACATACTTATTAGCTGATGATCTTGAATAAGAGTAAGACAACAAAAAAACACAAGCTCTGGATTCTTTTCAGGAGCCATCCCGATCACATGATTAGTGTAAACCTTCTACGTATTTAGTAGATTAGGTGAATAAGAATTTTGTTTATGGTTATCACCTGATAGATAATGTGAATCTTGTTACAACGGTCTACTTGAAAACCTTTGATCCCATAATTTGTACAAATCAGTCTTCTTTCTTAGGTGGTTTATCAAAATTAGAAGGTTGCTGTTTCTTAATAATCTAAAAATTAAGAAAGCAAGGGGCTCTAAATTGATCGTTTAACGAACAACTTGTTGCTTCTCTCGTGTAACCAGCAAAAAAGCCTTATTTGTTGGCAGTCCGATTGTTAGCATAGGTATCATTGAATCATAAGAAAAATTATGATACCAATTTTTATTTTCAGTTTTTCTAGTTAGCCATGTACTAATAAAACTTAATGCATTCTGAGTATCCTTTAGGTTCGGGATTGATTAAGAAGAAGGGCTTCAAAGGATCATTTGCAGAGGCTGGATCTTGTGCCAAGGTGTGATTATTGAAAAAGAATACTGGAGTGTTTCACAATGAATAAATTTCATTACTGGTTACTGCTCTTTGAGGCTTTTTAAGGACTAATTTTGTTCGCTAATCTTTTGTTAATTGCAATTTATGAATCAGACATTTGCAGTTTTGTCTGGAGTACACAGTTTGGTTGTTTGCATGTTAAAGAGATTGAGAGGAAAGGATGATGGTGTGGTAACTTCACTTCGGAAATATTCGTATTTGGCTGTTTCGATCCCCTTTCTAATGATGTTAACTCATTTTTGTAGTTATTAATGCTGGGGTAGCCGGATGCTGCACTGGTTTAGCTCTAAGTTTTCCAGGTAGTAACCTTTTCAACTGGCATCTCACTTCATTCTGTGATTACGTTTTTGGTGGCATCTGGCCTCTTTGTATGTTTTAATTCCATTCGAACACGTAAAGAAGTAGACAACACCTTATATGCCTCAGTTTCCACCATGGTAGCTCGTCGGCTCGAGCGACTCTTCAATTAATTTATTACGACTTGATTGATATTGCATTACTCCGAATTTTGATTTGGGTTAAAGAAGCTGAGTGTGAGTTCCCACATTGGTTGGAGAGAGGAACGAAGAATCCCTTATAAGAATGTGAAAACCTCTCCCTAGTGAGTGCGTTAAATCTTTAGGGGAAACCTGGAAGAGAAAGCCCAAAGAGAACAATATCTACTAACATTAGACTTGGGCGGTTACAAATGGTATCAAATCTAGACATCGAGCAGTGTGCCAACGAGGGCGCTGGTCCCCAAGGGGGTGAATTGTGAGTTCCCACATTGGTTGGAGAGGAGAACGAAGCATTCCTTATAAGGATGTGGAAACCTCTCCTAAGTGGACGCGTTTTAAAATCTAGAGGGGAAGCCCAGAAGGGACTAGTGGTGGGCTTGGACTTGGGCTGTTACATTGAGACGTACATCACTGCTACTTCGAATTCCTATATGTAAATGGAGGCTTTTGTTTCACAGGTGCTCCACAGGCTCTTCTTCAGAGTTGCATCACTTTTGGAGCGTTTTCGTTTATACTCGAGGGCCTTAACAAGCAGCAGCCAGCGTTGGCTCATCCCGCTTTCTCGAGAAAGAGACGTAATATGGAGAGAAATCATCCTCCCTTAGTTTTGCCGCTTCAATTTGCGCTTCCAGCTGAACTTAAAGGTGCATTTTCTGCATTCTGCAAGTCCTTGGAGAAGAGCAGGAGGAGCAGCTGGTAAGACCTCATCCAGCTCTCTTTTAACATCTTTTGCACAAGACAGTCGTATTAATGCAAATTTGTAGCTAATGTTTAAAAGAGTTTGTTGCAATTTGAATGTAATTGTGCACTTTTGGATGGCTTATTTGAAGCAATGTTTTGCTATCTTCTTGTTCGTCAATGCGGTCTAGTTTCTGGCTAAGTTACAGATACTTGTTATGCGTTCGTACTTATATATATATATTTTGTGTGTATACACATATATGTTTGGATGTATGTTATGTTATGTATGATGTATAATATGTACATAGATGAATAGACATTTTGGCGACTTCGGTGCATATGTTACATACAAAGCTACTTCGAGT

mRNA sequence

ACGACAGGTGTGAAAAAAGGCTAAATAATCGCTATCCGTTCGTCAAAGAAGAACAGAGAGCTTCGAATTCTGCACTCGGAAGATTGAGATTGAAAAAGGTGTTTAGCAGAGCAGAGTGAGGAAGATAGTGAATCGCAGCCATGGCGGATTCTTCAAGGGACGAGTCATCTGACGCTGAGTTCGAAACCAATCCTTCAGACAGCCCTAATTCCTCCGACGCCATAGTTCCCTCCTCTTTTGGTGGCCCTGCTCTTTGTCTTTTCCGGTTTGCTGGCGACTCCGCTGCCGGAGCCTTCATGGGCTCCATTTTCGGCTACGGTTCGGGATTGATTAAGAAGAAGGGCTTCAAAGGATCATTTGCAGAGGCTGGATCTTGTGCCAAGACATTTGCAGTTTTGTCTGGAGTACACAGTTTGGTTGTTTGCATGTTAAAGAGATTGAGAGGAAAGGATGATGTTATTAATGCTGGGGTAGCCGGATGCTGCACTGGTTTAGCTCTAAGTTTTCCAGGTGCTCCACAGGCTCTTCTTCAGAGTTGCATCACTTTTGGAGCGTTTTCGTTTATACTCGAGGGCCTTAACAAGCAGCAGCCAGCGTTGGCTCATCCCGCTTTCTCGAGAAAGAGACGTAATATGGAGAGAAATCATCCTCCCTTAGTTTTGCCGCTTCAATTTGCGCTTCCAGCTGAACTTAAAGGTGCATTTTCTGCATTCTGCAAGTCCTTGGAGAAGAGCAGGAGGAGCAGCTGGTAAGACCTCATCCAGCTCTCTTTTAACATCTTTTGCACAAGACAGTCGTATTAATGCAAATTTGTAGCTAATGTTTAAAAGAGTTTGTTGCAATTTGAATGTAATTGTGCACTTTTGGATGGCTTATTTGAAGCAATGTTTTGCTATCTTCTTGTTCGTCAATGCGGTCTAGTTTCTGGCTAAGTTACAGATACTTGTTATGCGTTCGTACTTATATATATATATTTTGTGTGTATACACATATATGTTTGGATGTATGTTATGTTATGTATGATGTATAATATGTACATAGATGAATAGACATTTTGGCGACTTCGGTGCATATGTTACATACAAAGCTACTTCGAGT

Coding sequence (CDS)

ATGGCGGATTCTTCAAGGGACGAGTCATCTGACGCTGAGTTCGAAACCAATCCTTCAGACAGCCCTAATTCCTCCGACGCCATAGTTCCCTCCTCTTTTGGTGGCCCTGCTCTTTGTCTTTTCCGGTTTGCTGGCGACTCCGCTGCCGGAGCCTTCATGGGCTCCATTTTCGGCTACGGTTCGGGATTGATTAAGAAGAAGGGCTTCAAAGGATCATTTGCAGAGGCTGGATCTTGTGCCAAGACATTTGCAGTTTTGTCTGGAGTACACAGTTTGGTTGTTTGCATGTTAAAGAGATTGAGAGGAAAGGATGATGTTATTAATGCTGGGGTAGCCGGATGCTGCACTGGTTTAGCTCTAAGTTTTCCAGGTGCTCCACAGGCTCTTCTTCAGAGTTGCATCACTTTTGGAGCGTTTTCGTTTATACTCGAGGGCCTTAACAAGCAGCAGCCAGCGTTGGCTCATCCCGCTTTCTCGAGAAAGAGACGTAATATGGAGAGAAATCATCCTCCCTTAGTTTTGCCGCTTCAATTTGCGCTTCCAGCTGAACTTAAAGGTGCATTTTCTGCATTCTGCAAGTCCTTGGAGAAGAGCAGGAGGAGCAGCTGGTAA

Homology

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BLAST of CmoCh06G006640 vs. Swiss-Prot
Match: TI222_ARATH (Mitochondrial import inner membrane translocase subunit TIM22-2 OS=Arabidopsis thaliana GN=TIM22-2 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.7e-63
Identity = 130/199 (65.33%), Postives = 154/199 (77.39%), Query Frame = 1


Query: 3   DSSRDESSDAEFETNPSDSPNSSDAIVPSSFGGPALCLFRFAGDSAAGAFMGSIFGYGSG 62
           D + D  S+   + + +   +SS A+V  +   PA+CLFRFAGD+A GA MGSIFGYGSG
Sbjct: 13  DGNLDSDSNLNTDGDEATDNDSSKALV--TIPAPAVCLFRFAGDAAGGAVMGSIFGYGSG 72

Query: 63  LIKKKGFKGSFAEAGSCAKTFAVLSGVHSLVVCMLKRLRGKDDVINAGVAGCCTGLALSF 122
           L KKKGFKGSFA+AG  AKTFAVLSGVHSLVVC+LK++RGKDD IN GVAGCCTGLALSF
Sbjct: 73  LFKKKGFKGSFADAGQSAKTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSF 132

Query: 123 PGAPQALLQSCITFGAFSFILEGLNKQQPALAHPAFSRKRRNM-ERNHPPLVLPLQFALP 182
           PGAPQALLQSC+TFGAFSFILEGLNK+Q ALAH    R +  + + +H  L L L   +P
Sbjct: 133 PGAPQALLQSCLTFGAFSFILEGLNKRQTALAHSVSLRHQTGLFQDHHRALPLSLALPIP 192

Query: 183 AELKGAFSAFCKSLEKSRR 201
            E+KGAFS+FCKSL K R+
Sbjct: 193 EEIKGAFSSFCKSLAKPRK 209

[Close]

BLAST of CmoCh06G006640 vs. Swiss-Prot
Match: TI223_ARATH (Mitochondrial import inner membrane translocase subunit TIM22-3 OS=Arabidopsis thaliana GN=TIM22-3 PE=2 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.2e-60
Identity = 127/199 (63.82%), Postives = 152/199 (76.38%), Query Frame = 1


Query: 3   DSSRDESSDAEFETNP-SDSPNSSDAIVPSSFGGPALCLFRFAGDSAAGAFMGSIFGYGS 62
           D+S D  S    + N  +D  +SS A+V      PA+CL RFAGD+A+GAFMGS+FGYGS
Sbjct: 13  DTSLDSDSKPNRDANDMTDHDSSSKALV---IPAPAVCLVRFAGDAASGAFMGSVFGYGS 72

Query: 63  GLIKKKGFKGSFAEAGSCAKTFAVLSGVHSLVVCMLKRLRGKDDVINAGVAGCCTGLALS 122
           GL KKKGFKGSF +AG  AKTFAVLSGVHSLVVC+LK++RGKDD IN GVAGCCTGLALS
Sbjct: 73  GLFKKKGFKGSFVDAGQSAKTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALS 132

Query: 123 FPGAPQALLQSCITFGAFSFILEGLNKQQPALAHPAFSRKRRNMERNHPPLVLPLQFALP 182
           FPGAPQA+LQSC+TFGAFSFILEGLNK+Q ALAH    R++    ++  PL L L   + 
Sbjct: 133 FPGAPQAMLQSCLTFGAFSFILEGLNKRQTALAHSVSFRQQTRSPQHDLPL-LSLAIPIH 192

Query: 183 AELKGAFSAFCKSLEKSRR 201
            E+KGAFS+FC SL K ++
Sbjct: 193 DEIKGAFSSFCNSLTKPKK 207

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BLAST of CmoCh06G006640 vs. Swiss-Prot
Match: TIM22_ASPOR (Mitochondrial import inner membrane translocase subunit tim22 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=tim22 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.2e-07
Identity = 27/79 (34.18%), Postives = 44/79 (55.70%), Query Frame = 1


Query: 66  KKGFKGSFAEAGSCAKTFAVLSGVHSLVVCMLKRLRGKDDVINAGVAGCCTGLALSFPGA 125
           ++GFK   + + S AK F ++  ++S   C ++ LR K+D+ N+ ++GC TG  L     
Sbjct: 97  RRGFKDMGSRSWSSAKNFGIVGALYSGTECCVEGLRAKNDLSNSVISGCITGGILGAKAG 156

Query: 126 PQALLQSCITFGAFSFILE 145
           PQA    C  F AFS  ++
Sbjct: 157 PQAAAAGCAGFAAFSAAID 175

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BLAST of CmoCh06G006640 vs. Swiss-Prot
Match: TIM22_NEUCR (Mitochondrial import inner membrane translocase subunit tim22 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tim22 PE=3 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 8.1e-07
Identity = 31/79 (39.24%), Postives = 42/79 (53.16%), Query Frame = 1


Query: 66  KKGFKGSFAEAGSCAKTFAVLSGVHSLVVCMLKRLRGKDDVINAGVAGCCTGLALSFPGA 125
           K GFK     + S AK FA +  + S + C ++ LR K+D+ N   AGC TG  L+  G 
Sbjct: 106 KHGFKDMGQRSYSTAKNFAKVGALFSGIECGIEGLRAKNDLGNGVAAGCLTGAILAKNGG 165

Query: 126 PQALLQSCITFGAFSFILE 145
           PQA    C  F AFS  ++
Sbjct: 166 PQAAAVGCAGFAAFSAAID 184

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BLAST of CmoCh06G006640 vs. TrEMBL
Match: A0A0A0L4X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G062610 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.2e-89
Identity = 179/205 (87.32%), Postives = 183/205 (89.27%), Query Frame = 1


Query: 1   MADSSRDESSDAE-FETNPSDSPNSSDAIVPSS-FGGPALCLFRFAGDSAAGAFMGSIFG 60
           MADSS+D S DA+   TN SDSPNSSDAIVPS  F GPALCLFRFAGDS AGAFMGSIFG
Sbjct: 1   MADSSKDVSPDADNLLTNSSDSPNSSDAIVPSPPFTGPALCLFRFAGDSVAGAFMGSIFG 60

Query: 61  YGSGLIKKKGFKGSFAEAGSCAKTFAVLSGVHSLVVCMLKRLRGKDDVINAGVAGCCTGL 120
           YGSGLIKK GFKGSFAEAGSCAKTFAVLSGVHSLV CMLK LRGKDDVIN GVAGCCTGL
Sbjct: 61  YGSGLIKKNGFKGSFAEAGSCAKTFAVLSGVHSLVACMLKTLRGKDDVINHGVAGCCTGL 120

Query: 121 ALSFPGAPQALLQSCITFGAFSFILEGLNKQQPALAHPAFSRKRRNMERNHPPLVLPLQF 180
           ALSFPGAPQALLQSCITFGAFSFILE LNK+QPALAHP FSR R  MERN PPLVLPLQF
Sbjct: 121 ALSFPGAPQALLQSCITFGAFSFILESLNKRQPALAHPIFSRTRSEMERNRPPLVLPLQF 180

Query: 181 ALPAELKGAFSAFCKSLEKSRRSSW 204
           ALP ELKGAFS+FCKSLEKSRR SW
Sbjct: 181 ALPVELKGAFSSFCKSLEKSRRCSW 205

[Close]

BLAST of CmoCh06G006640 vs. TrEMBL
Match: W9RCA8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009525 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.2e-75
Identity = 148/190 (77.89%), Postives = 166/190 (87.37%), Query Frame = 1


Query: 10  SDAEFET--NPSDSPNSSDAIVPSSFGGPALCLFRFAGDSAAGAFMGSIFGYGSGLIKKK 69
           SD +F+T  NP  + N S+A+VPS   GPA+CL RFAGDSAAGAFMGSIFGYG+GL+KKK
Sbjct: 12  SDTDFDTFPNPKPTSNPSNALVPS---GPAVCLLRFAGDSAAGAFMGSIFGYGAGLVKKK 71

Query: 70  GFKGSFAEAGSCAKTFAVLSGVHSLVVCMLKRLRGKDDVINAGVAGCCTGLALSFPGAPQ 129
           GFKGSF+EAGS AKTFAVLSGVHSLVVC+LKR+RGKDDVINAGVAGCCTGLALSFPGAPQ
Sbjct: 72  GFKGSFSEAGSSAKTFAVLSGVHSLVVCILKRIRGKDDVINAGVAGCCTGLALSFPGAPQ 131

Query: 130 ALLQSCITFGAFSFILEGLNKQQPALAHPAFSRKRRNMERNHPPLVLPLQFALPAELKGA 189
           ALLQSC+TFGAFSFI+EGLNKQQPALAHP  +R +      HPP+ LPLQF LP ELKGA
Sbjct: 132 ALLQSCLTFGAFSFIIEGLNKQQPALAHPFSARTKSQRHDIHPPMALPLQFPLPNELKGA 191

Query: 190 FSAFCKSLEK 198
           FS+FCKSL+K
Sbjct: 192 FSSFCKSLQK 198

[Close]

BLAST of CmoCh06G006640 vs. TrEMBL
Match: M5WV89_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011495mg PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 9.1e-74
Identity = 146/198 (73.74%), Postives = 168/198 (84.85%), Query Frame = 1


Query: 7   DESSDAEFETNPS--DSPNSSDAIVPSSFGGPALCLFRFAGDSAAGAFMGSIFGYGSGLI 66
           D  +D E +TNP+   +PNSS+++VP+S  GPA+CL RFAGDSA GAFMGS+FGYG+GL+
Sbjct: 11  DTDTDTELDTNPNLNPNPNSSNSLVPASSNGPAVCLLRFAGDSAGGAFMGSVFGYGAGLV 70

Query: 67  KKKGFKGSFAEAGSCAKTFAVLSGVHSLVVCMLKRLRGKDDVINAGVAGCCTGLALSFPG 126
           KKKGFKGSFAEAGS AKTFAVLSGVHSLVVC+LKRLRGKDDVINAGVAGCCTGLALSFPG
Sbjct: 71  KKKGFKGSFAEAGSYAKTFAVLSGVHSLVVCILKRLRGKDDVINAGVAGCCTGLALSFPG 130

Query: 127 APQALLQSCITFGAFSFILEGLNKQQPALAHPAFSRKRRNMERNHPPLVLPLQFALPAEL 186
           APQALLQSC+TFGAFSFI+EGLNKQQPALAHP   RK+       PPLVLPLQ +LP EL
Sbjct: 131 APQALLQSCLTFGAFSFIIEGLNKQQPALAHPLSVRKK---SEQLPPLVLPLQLSLPGEL 190

Query: 187 KGAFSAFCKSLEKSRRSS 203
           K  F++FC SL+  + +S
Sbjct: 191 KAGFTSFCNSLKNHKGTS 205

[Close]

BLAST of CmoCh06G006640 vs. TrEMBL
Match: A0A0B0NT47_GOSAR (Mitochondrial import inner membrane translocase subunit tim22 OS=Gossypium arboreum GN=F383_19253 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.9e-71
Identity = 147/198 (74.24%), Postives = 164/198 (82.83%), Query Frame = 1


Query: 5   SRDESSDAEFETNPSDSPNSSDAIVP--SSFGGPALCLFRFAGDSAAGAFMGSIFGYGSG 64
           S + S++++ ETNP+  PNSS AI+P  S+   PA+CLF+FAGDSAAGAFMGSIFGYGSG
Sbjct: 6   SPNTSAESDIETNPN--PNSSKAIIPTPSNSNSPAVCLFQFAGDSAAGAFMGSIFGYGSG 65

Query: 65  LIKKKGFKGSFAEAGSCAKTFAVLSGVHSLVVCMLKRLRGKDDVINAGVAGCCTGLALSF 124
           LIKKKGFKGSF EAGS AKTFAVLSGVHSLVVC LKRLRGKDDVINAGVAGCCTGLALSF
Sbjct: 66  LIKKKGFKGSFVEAGSYAKTFAVLSGVHSLVVCFLKRLRGKDDVINAGVAGCCTGLALSF 125

Query: 125 PGAPQALLQSCITFGAFSFILEGLNKQQPALAHPAFSRKRRNMERNHPPLVLPLQFALPA 184
           PGAPQALLQSC+TFGAFSFI+EGLNKQQPALAH   +R      +   PL LPL   +P 
Sbjct: 126 PGAPQALLQSCLTFGAFSFIIEGLNKQQPALAHSFSARNESAHHKGPHPLALPLSIPIPD 185

Query: 185 ELKGAFSAFCKSLEKSRR 201
           ELKGAFS+FCKSL K  +
Sbjct: 186 ELKGAFSSFCKSLVKPNK 201

[Close]

BLAST of CmoCh06G006640 vs. TrEMBL
Match: A0A0D2SEU7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G156500 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.5e-71
Identity = 147/198 (74.24%), Postives = 164/198 (82.83%), Query Frame = 1


Query: 5   SRDESSDAEFETNPSDSPNSSDAIV--PSSFGGPALCLFRFAGDSAAGAFMGSIFGYGSG 64
           S + S+ ++ ETNP+  PNSS AI+  PS+   PA+CLF+FAGDSAAGAFMGSIFGYGSG
Sbjct: 31  SPNTSAGSDIETNPN--PNSSKAIILTPSNSNSPAVCLFQFAGDSAAGAFMGSIFGYGSG 90

Query: 65  LIKKKGFKGSFAEAGSCAKTFAVLSGVHSLVVCMLKRLRGKDDVINAGVAGCCTGLALSF 124
           LIKKKGFKGSF EAGS AKTFAVLSGVHSLVVC LKRLRGKDDVINAGVAGCCTGLALSF
Sbjct: 91  LIKKKGFKGSFVEAGSYAKTFAVLSGVHSLVVCFLKRLRGKDDVINAGVAGCCTGLALSF 150

Query: 125 PGAPQALLQSCITFGAFSFILEGLNKQQPALAHPAFSRKRRNMERNHPPLVLPLQFALPA 184
           PGAPQALLQSC+TFGAFSFI+EGLNKQQPALAH   +R +    +   PL LPL   +P 
Sbjct: 151 PGAPQALLQSCLTFGAFSFIIEGLNKQQPALAHSFSARNKSAHHKGPRPLALPLSIPIPD 210

Query: 185 ELKGAFSAFCKSLEKSRR 201
           ELKGAFS+FCKSL K  +
Sbjct: 211 ELKGAFSSFCKSLVKPNK 226

[Close]

BLAST of CmoCh06G006640 vs. TAIR10
Match: AT4G26670.1 (AT4G26670.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein)

HSP 1 Score: 242.3 bits (617), Expect = 2.6e-64
Identity = 130/199 (65.33%), Postives = 154/199 (77.39%), Query Frame = 1


Query: 3   DSSRDESSDAEFETNPSDSPNSSDAIVPSSFGGPALCLFRFAGDSAAGAFMGSIFGYGSG 62
           D + D  S+   + + +   +SS A+V  +   PA+CLFRFAGD+A GA MGSIFGYGSG
Sbjct: 13  DGNLDSDSNLNTDGDEATDNDSSKALV--TIPAPAVCLFRFAGDAAGGAVMGSIFGYGSG 72

Query: 63  LIKKKGFKGSFAEAGSCAKTFAVLSGVHSLVVCMLKRLRGKDDVINAGVAGCCTGLALSF 122
           L KKKGFKGSFA+AG  AKTFAVLSGVHSLVVC+LK++RGKDD IN GVAGCCTGLALSF
Sbjct: 73  LFKKKGFKGSFADAGQSAKTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALSF 132

Query: 123 PGAPQALLQSCITFGAFSFILEGLNKQQPALAHPAFSRKRRNM-ERNHPPLVLPLQFALP 182
           PGAPQALLQSC+TFGAFSFILEGLNK+Q ALAH    R +  + + +H  L L L   +P
Sbjct: 133 PGAPQALLQSCLTFGAFSFILEGLNKRQTALAHSVSLRHQTGLFQDHHRALPLSLALPIP 192

Query: 183 AELKGAFSAFCKSLEKSRR 201
            E+KGAFS+FCKSL K R+
Sbjct: 193 EEIKGAFSSFCKSLAKPRK 209

[Close]

BLAST of CmoCh06G006640 vs. TAIR10
Match: AT5G55510.1 (AT5G55510.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein)

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-61
Identity = 127/199 (63.82%), Postives = 152/199 (76.38%), Query Frame = 1


Query: 3   DSSRDESSDAEFETNP-SDSPNSSDAIVPSSFGGPALCLFRFAGDSAAGAFMGSIFGYGS 62
           D+S D  S    + N  +D  +SS A+V      PA+CL RFAGD+A+GAFMGS+FGYGS
Sbjct: 13  DTSLDSDSKPNRDANDMTDHDSSSKALV---IPAPAVCLVRFAGDAASGAFMGSVFGYGS 72

Query: 63  GLIKKKGFKGSFAEAGSCAKTFAVLSGVHSLVVCMLKRLRGKDDVINAGVAGCCTGLALS 122
           GL KKKGFKGSF +AG  AKTFAVLSGVHSLVVC+LK++RGKDD IN GVAGCCTGLALS
Sbjct: 73  GLFKKKGFKGSFVDAGQSAKTFAVLSGVHSLVVCLLKQIRGKDDAINVGVAGCCTGLALS 132

Query: 123 FPGAPQALLQSCITFGAFSFILEGLNKQQPALAHPAFSRKRRNMERNHPPLVLPLQFALP 182
           FPGAPQA+LQSC+TFGAFSFILEGLNK+Q ALAH    R++    ++  PL L L   + 
Sbjct: 133 FPGAPQAMLQSCLTFGAFSFILEGLNKRQTALAHSVSFRQQTRSPQHDLPL-LSLAIPIH 192

Query: 183 AELKGAFSAFCKSLEKSRR 201
            E+KGAFS+FC SL K ++
Sbjct: 193 DEIKGAFSSFCNSLTKPKK 207

[Close]

BLAST of CmoCh06G006640 vs. NCBI nr
Match: gi|778675921|ref|XP_011650497.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like [Cucumis sativus])

HSP 1 Score: 337.4 bits (864), Expect = 1.7e-89
Identity = 179/205 (87.32%), Postives = 183/205 (89.27%), Query Frame = 1


Query: 1   MADSSRDESSDAE-FETNPSDSPNSSDAIVPSS-FGGPALCLFRFAGDSAAGAFMGSIFG 60
           MADSS+D S DA+   TN SDSPNSSDAIVPS  F GPALCLFRFAGDS AGAFMGSIFG
Sbjct: 1   MADSSKDVSPDADNLLTNSSDSPNSSDAIVPSPPFTGPALCLFRFAGDSVAGAFMGSIFG 60

Query: 61  YGSGLIKKKGFKGSFAEAGSCAKTFAVLSGVHSLVVCMLKRLRGKDDVINAGVAGCCTGL 120
           YGSGLIKK GFKGSFAEAGSCAKTFAVLSGVHSLV CMLK LRGKDDVIN GVAGCCTGL
Sbjct: 61  YGSGLIKKNGFKGSFAEAGSCAKTFAVLSGVHSLVACMLKTLRGKDDVINHGVAGCCTGL 120

Query: 121 ALSFPGAPQALLQSCITFGAFSFILEGLNKQQPALAHPAFSRKRRNMERNHPPLVLPLQF 180
           ALSFPGAPQALLQSCITFGAFSFILE LNK+QPALAHP FSR R  MERN PPLVLPLQF
Sbjct: 121 ALSFPGAPQALLQSCITFGAFSFILESLNKRQPALAHPIFSRTRSEMERNRPPLVLPLQF 180

Query: 181 ALPAELKGAFSAFCKSLEKSRRSSW 204
           ALP ELKGAFS+FCKSLEKSRR SW
Sbjct: 181 ALPVELKGAFSSFCKSLEKSRRCSW 205

[Close]

BLAST of CmoCh06G006640 vs. NCBI nr
Match: gi|659096622|ref|XP_008449195.1| (PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2, partial [Cucumis melo])

HSP 1 Score: 324.3 bits (830), Expect = 1.5e-85
Identity = 162/171 (94.74%), Postives = 165/171 (96.49%), Query Frame = 1


Query: 33  FGGPALCLFRFAGDSAAGAFMGSIFGYGSGLIKKKGFKGSFAEAGSCAKTFAVLSGVHSL 92
           F GPALCLFRFAGDSAAGAFMGS+FGYGSGLIKKKGFKGSFAEAGSCAKTFAVLSGVHSL
Sbjct: 11  FTGPALCLFRFAGDSAAGAFMGSVFGYGSGLIKKKGFKGSFAEAGSCAKTFAVLSGVHSL 70

Query: 93  VVCMLKRLRGKDDVINAGVAGCCTGLALSFPGAPQALLQSCITFGAFSFILEGLNKQQPA 152
           VVCMLKRLRGKDDVINAGVAGCCTGLALSFPGAPQALLQSCITFGAFSFILEGLNKQQPA
Sbjct: 71  VVCMLKRLRGKDDVINAGVAGCCTGLALSFPGAPQALLQSCITFGAFSFILEGLNKQQPA 130

Query: 153 LAHPAFSRKRRNMERNHPPLVLPLQFALPAELKGAFSAFCKSLEKSRRSSW 204
           LAHP FSR R N+ERN PPLVLPLQFALP ELKGAFSAFCKSLEKSR+SSW
Sbjct: 131 LAHPVFSRTRSNIERNCPPLVLPLQFALPVELKGAFSAFCKSLEKSRKSSW 181

[Close]

BLAST of CmoCh06G006640 vs. NCBI nr
Match: gi|703101838|ref|XP_010097293.1| (hypothetical protein L484_009525 [Morus notabilis])

HSP 1 Score: 290.0 bits (741), Expect = 3.1e-75
Identity = 148/190 (77.89%), Postives = 166/190 (87.37%), Query Frame = 1


Query: 10  SDAEFET--NPSDSPNSSDAIVPSSFGGPALCLFRFAGDSAAGAFMGSIFGYGSGLIKKK 69
           SD +F+T  NP  + N S+A+VPS   GPA+CL RFAGDSAAGAFMGSIFGYG+GL+KKK
Sbjct: 12  SDTDFDTFPNPKPTSNPSNALVPS---GPAVCLLRFAGDSAAGAFMGSIFGYGAGLVKKK 71

Query: 70  GFKGSFAEAGSCAKTFAVLSGVHSLVVCMLKRLRGKDDVINAGVAGCCTGLALSFPGAPQ 129
           GFKGSF+EAGS AKTFAVLSGVHSLVVC+LKR+RGKDDVINAGVAGCCTGLALSFPGAPQ
Sbjct: 72  GFKGSFSEAGSSAKTFAVLSGVHSLVVCILKRIRGKDDVINAGVAGCCTGLALSFPGAPQ 131

Query: 130 ALLQSCITFGAFSFILEGLNKQQPALAHPAFSRKRRNMERNHPPLVLPLQFALPAELKGA 189
           ALLQSC+TFGAFSFI+EGLNKQQPALAHP  +R +      HPP+ LPLQF LP ELKGA
Sbjct: 132 ALLQSCLTFGAFSFIIEGLNKQQPALAHPFSARTKSQRHDIHPPMALPLQFPLPNELKGA 191

Query: 190 FSAFCKSLEK 198
           FS+FCKSL+K
Sbjct: 192 FSSFCKSLQK 198

[Close]

BLAST of CmoCh06G006640 vs. NCBI nr
Match: gi|595873886|ref|XP_007212059.1| (hypothetical protein PRUPE_ppa011495mg [Prunus persica])

HSP 1 Score: 284.6 bits (727), Expect = 1.3e-73
Identity = 146/198 (73.74%), Postives = 168/198 (84.85%), Query Frame = 1


Query: 7   DESSDAEFETNPS--DSPNSSDAIVPSSFGGPALCLFRFAGDSAAGAFMGSIFGYGSGLI 66
           D  +D E +TNP+   +PNSS+++VP+S  GPA+CL RFAGDSA GAFMGS+FGYG+GL+
Sbjct: 11  DTDTDTELDTNPNLNPNPNSSNSLVPASSNGPAVCLLRFAGDSAGGAFMGSVFGYGAGLV 70

Query: 67  KKKGFKGSFAEAGSCAKTFAVLSGVHSLVVCMLKRLRGKDDVINAGVAGCCTGLALSFPG 126
           KKKGFKGSFAEAGS AKTFAVLSGVHSLVVC+LKRLRGKDDVINAGVAGCCTGLALSFPG
Sbjct: 71  KKKGFKGSFAEAGSYAKTFAVLSGVHSLVVCILKRLRGKDDVINAGVAGCCTGLALSFPG 130

Query: 127 APQALLQSCITFGAFSFILEGLNKQQPALAHPAFSRKRRNMERNHPPLVLPLQFALPAEL 186
           APQALLQSC+TFGAFSFI+EGLNKQQPALAHP   RK+       PPLVLPLQ +LP EL
Sbjct: 131 APQALLQSCLTFGAFSFIIEGLNKQQPALAHPLSVRKK---SEQLPPLVLPLQLSLPGEL 190

Query: 187 KGAFSAFCKSLEKSRRSS 203
           K  F++FC SL+  + +S
Sbjct: 191 KAGFTSFCNSLKNHKGTS 205

[Close]

BLAST of CmoCh06G006640 vs. NCBI nr
Match: gi|728834813|gb|KHG14256.1| (mitochondrial import inner membrane translocase subunit tim22 [Gossypium arboreum])

HSP 1 Score: 276.9 bits (707), Expect = 2.7e-71
Identity = 147/198 (74.24%), Postives = 164/198 (82.83%), Query Frame = 1


Query: 5   SRDESSDAEFETNPSDSPNSSDAIVP--SSFGGPALCLFRFAGDSAAGAFMGSIFGYGSG 64
           S + S++++ ETNP+  PNSS AI+P  S+   PA+CLF+FAGDSAAGAFMGSIFGYGSG
Sbjct: 6   SPNTSAESDIETNPN--PNSSKAIIPTPSNSNSPAVCLFQFAGDSAAGAFMGSIFGYGSG 65

Query: 65  LIKKKGFKGSFAEAGSCAKTFAVLSGVHSLVVCMLKRLRGKDDVINAGVAGCCTGLALSF 124
           LIKKKGFKGSF EAGS AKTFAVLSGVHSLVVC LKRLRGKDDVINAGVAGCCTGLALSF
Sbjct: 66  LIKKKGFKGSFVEAGSYAKTFAVLSGVHSLVVCFLKRLRGKDDVINAGVAGCCTGLALSF 125

Query: 125 PGAPQALLQSCITFGAFSFILEGLNKQQPALAHPAFSRKRRNMERNHPPLVLPLQFALPA 184
           PGAPQALLQSC+TFGAFSFI+EGLNKQQPALAH   +R      +   PL LPL   +P 
Sbjct: 126 PGAPQALLQSCLTFGAFSFIIEGLNKQQPALAHSFSARNESAHHKGPHPLALPLSIPIPD 185

Query: 185 ELKGAFSAFCKSLEKSRR 201
           ELKGAFS+FCKSL K  +
Sbjct: 186 ELKGAFSSFCKSLVKPNK 201

The following BLAST results are available for this feature:

BLAST of CmoCh06G006640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TI222_ARATH	4.7e-63	65.33	Mitochondrial import inner membrane translocase subunit TIM22-2 OS=Arabidopsis t...	[more]
TI223_ARATH	2.2e-60	63.82	Mitochondrial import inner membrane translocase subunit TIM22-3 OS=Arabidopsis t...	[more]
TIM22_ASPOR	6.2e-07	34.18	Mitochondrial import inner membrane translocase subunit tim22 OS=Aspergillus ory...	[more]
TIM22_NEUCR	8.1e-07	39.24	Mitochondrial import inner membrane translocase subunit tim22 OS=Neurospora cras...	[more]

BLAST of CmoCh06G006640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4X2_CUCSA	1.2e-89	87.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G062610 PE=4 SV=1	[more]
W9RCA8_9ROSA	2.2e-75	77.89	Uncharacterized protein OS=Morus notabilis GN=L484_009525 PE=4 SV=1	[more]
M5WV89_PRUPE	9.1e-74	73.74	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011495mg PE=4 SV=1	[more]
A0A0B0NT47_GOSAR	1.9e-71	74.24	Mitochondrial import inner membrane translocase subunit tim22 OS=Gossypium arbor...	[more]
A0A0D2SEU7_GOSRA	2.5e-71	74.24	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G156500 PE=4 SV=1	[more]

BLAST of CmoCh06G006640 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26670.1	2.6e-64	65.33	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/...	[more]
AT5G55510.1	1.2e-61	63.82	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/...	[more]

BLAST of CmoCh06G006640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778675921\|ref\|XP_011650497.1\|	1.7e-89	87.32	PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like ...	[more]
gi\|659096622\|ref\|XP_008449195.1\|	1.5e-85	94.74	PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2, part...	[more]
gi\|703101838\|ref\|XP_010097293.1\|	3.1e-75	77.89	hypothetical protein L484_009525 [Morus notabilis]	[more]
gi\|595873886\|ref\|XP_007212059.1\|	1.3e-73	73.74	hypothetical protein PRUPE_ppa011495mg [Prunus persica]	[more]
gi\|728834813\|gb\|KHG14256.1\|	2.7e-71	74.24	mitochondrial import inner membrane translocase subunit tim22 [Gossypium arboreu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003397	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045039	protein import into mitochondrial inner membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0042721	mitochondrial inner membrane protein insertion complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G006640.1	CmoCh06G006640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003397	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	PFAM	PF02466	Tim17	coord: 39..140 score: 1.3
None	No IPR available	PANTHER	PTHR14110	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22	coord: 11..203 score: 2.2
None	No IPR available	PANTHER	PTHR14110:SF1	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22-2-RELATED	coord: 11..203 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G006640	CmaCh06G006570	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G006640	ClCG10G004660	Watermelon (Charleston Gray)	cmowcgB733
CmoCh06G006640	Cp4.1LG08g08530	Cucurbita pepo (Zucchini)	cmocpeB797
CmoCh06G006640	MELO3C014143.2	Melon (DHL92) v3.6.1	cmomedB864
CmoCh06G006640	Cla97C10G189100	Watermelon (97103) v2	cmowmbB824
CmoCh06G006640	Bhi11G000399	Wax gourd	cmowgoB0993
CmoCh06G006640	Carg23561	Silver-seed gourd	carcmoB0013

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G006640	Cucurbita pepo (Zucchini)	cmocpeB768
CmoCh06G006640	Bottle gourd (USVL1VR-Ls)	cmolsiB760
CmoCh06G006640	Cucumber (Gy14) v2	cgybcmoB409
CmoCh06G006640	Melon (DHL92) v3.6.1	cmomedB861
CmoCh06G006640	Silver-seed gourd	carcmoB0798
CmoCh06G006640	Cucumber (Chinese Long) v3	cmocucB0961
CmoCh06G006640	Watermelon (97103) v2	cmowmbB819
CmoCh06G006640	Wax gourd	cmowgoB0985
CmoCh06G006640	Cucurbita moschata (Rifu)	cmocmoB291
CmoCh06G006640	Cucumber (Gy14) v1	cgycmoB0030
CmoCh06G006640	Cucurbita maxima (Rimu)	cmacmoB341
CmoCh06G006640	Wild cucumber (PI 183967)	cmocpiB823
CmoCh06G006640	Cucumber (Chinese Long) v2	cmocuB815
CmoCh06G006640	Melon (DHL92) v3.5.1	cmomeB756
CmoCh06G006640	Watermelon (Charleston Gray)	cmowcgB730
CmoCh06G006640	Watermelon (97103) v1	cmowmB776