CmoCh06G005020 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G005020
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	40S ribosomal protein S17
Location	Cmo_Chr06 : 2414116 .. 2414535 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACGCGTTCGCACCAAAACAGTGAAGAAATCTTCCCGTCAAGTCATTGAGCGCTACTACTCGCGCATGACTCTGGACTTCCATACGAACAAGAAGATTCTGGAAGAGGTCGCCATTATCCCTTCCAAGAGACTCCGAAACAAGATAGCCGGATTCTCCACTCACCTCATGAAGCGGATCCAAAAGGGACCTGTTCGCGGCATTTCTCTGAAGCTTCAAGAGGAAGAGCGCGAGCGCCGAATGGACTTCGTCCCTGATGTCTCCGCCATTAAAACTGATCAAATCGAGGTCGATAGGGAGACTCTCGATATGCTTTCTGCTCTTGGAATGACCGATATTCCGGGGATAGTTCAGGTCGATCCGACTGTGCCACAGCAGGTTGCGTTCGGATTGGGCGGTCGCGGTAGGAGGTACTGA

mRNA sequence

ATGGGACGCGTTCGCACCAAAACAGTGAAGAAATCTTCCCGTCAAGTCATTGAGCGCTACTACTCGCGCATGACTCTGGACTTCCATACGAACAAGAAGATTCTGGAAGAGGTCGCCATTATCCCTTCCAAGAGACTCCGAAACAAGATAGCCGGATTCTCCACTCACCTCATGAAGCGGATCCAAAAGGGACCTGTTCGCGGCATTTCTCTGAAGCTTCAAGAGGAAGAGCGCGAGCGCCGAATGGACTTCGTCCCTGATGTCTCCGCCATTAAAACTGATCAAATCGAGGTCGATAGGGAGACTCTCGATATGCTTTCTGCTCTTGGAATGACCGATATTCCGGGGATAGTTCAGGTCGATCCGACTGTGCCACAGCAGGTTGCGTTCGGATTGGGCGGTCGCGGTAGGAGGTACTGA

Coding sequence (CDS)

ATGGGACGCGTTCGCACCAAAACAGTGAAGAAATCTTCCCGTCAAGTCATTGAGCGCTACTACTCGCGCATGACTCTGGACTTCCATACGAACAAGAAGATTCTGGAAGAGGTCGCCATTATCCCTTCCAAGAGACTCCGAAACAAGATAGCCGGATTCTCCACTCACCTCATGAAGCGGATCCAAAAGGGACCTGTTCGCGGCATTTCTCTGAAGCTTCAAGAGGAAGAGCGCGAGCGCCGAATGGACTTCGTCCCTGATGTCTCCGCCATTAAAACTGATCAAATCGAGGTCGATAGGGAGACTCTCGATATGCTTTCTGCTCTTGGAATGACCGATATTCCGGGGATAGTTCAGGTCGATCCGACTGTGCCACAGCAGGTTGCGTTCGGATTGGGCGGTCGCGGTAGGAGGTACTGA

Homology

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BLAST of CmoCh06G005020 vs. Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-57
Identity = 121/145 (83.45%), Postives = 128/145 (88.28%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD IEVD+ETLDMLSALGM+D+PG+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVK- 120

Query: 121 DPTVPQQVAF------GLGGRGRRY 140
               PQ VA       G GG GR+Y
Sbjct: 121 QAAEPQAVAALPSYGRGGGGFGRKY 144

[Close]

BLAST of CmoCh06G005020 vs. Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-56
Identity = 116/141 (82.27%), Postives = 126/141 (89.36%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D PGI  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--TVPQQVAFGLGGRGRRY 140
           +P   +    AFG G   RRY
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY 141

[Close]

BLAST of CmoCh06G005020 vs. Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=2 SV=3)

HSP 1 Score: 216.9 bits (551), Expect = 1.4e-55
Identity = 116/141 (82.27%), Postives = 125/141 (88.65%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D  GI  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 DP--TVPQQVAFGLGGRGRRY 140
           DP   +    AFG G   RRY
Sbjct: 121 DPQQAMAPIPAFGGGRAPRRY 141

[Close]

BLAST of CmoCh06G005020 vs. Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 216.5 bits (550), Expect = 1.9e-55
Identity = 114/140 (81.43%), Postives = 123/140 (87.86%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D  GI  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 DPTVPQQVAFGLGGRG-RRY 140
           +P          GGR  RRY
Sbjct: 121 EPQQAMAPIAAFGGRAPRRY 140

[Close]

BLAST of CmoCh06G005020 vs. Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 209.1 bits (531), Expect = 3.0e-53
Identity = 107/121 (88.43%), Postives = 116/121 (95.87%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIK D ++VD+ETL+ML++LGM+DI GI QV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 D 122
           +
Sbjct: 121 E 121

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BLAST of CmoCh06G005020 vs. TrEMBL
Match: A0A0A0LB02_CUCSA (40S ribosomal protein S17 OS=Cucumis sativus GN=Csa_3G778310 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.5e-67
Identity = 133/139 (95.68%), Postives = 137/139 (98.56%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVD+ETLDMLSALGM DIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVAFGLGGRGRRY 140
           DPTVPQQV FGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of CmoCh06G005020 vs. TrEMBL
Match: I1JGK9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G200300 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.1e-61
Identity = 124/140 (88.57%), Postives = 132/140 (94.29%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAI+TDQIEVD+ETLDML+ALGM+++PGIVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIRTDQIEVDKETLDMLAALGMSEVPGIVQV 120

Query: 121 DPTVPQ-QVAFGLGGRGRRY 140
           DP   Q  + FG GG GRRY
Sbjct: 121 DPVAVQAPLGFGRGGPGRRY 140

[Close]

BLAST of CmoCh06G005020 vs. TrEMBL
Match: I3SPL5_MEDTR (40S ribosomal protein S17 OS=Medicago truncatula GN=MTR_1g058250 PE=2 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-59
Identity = 123/144 (85.42%), Postives = 132/144 (91.67%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVA+IPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAI+TD IEVD+ETLDML+ALGM++IPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIRTDHIEVDKETLDMLAALGMSEIPGVVQV 120

Query: 121 DPTVPQQVAFGLG-----GRGRRY 140
           DP   QQV FG G     G GRR+
Sbjct: 121 DPVPVQQVPFGRGAGVAAGGGRRF 144

[Close]

BLAST of CmoCh06G005020 vs. TrEMBL
Match: B9SWH2_RICCO (40S ribosomal protein S17, putative OS=Ricinus communis GN=RCOM_0293410 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-59
Identity = 126/143 (88.11%), Postives = 132/143 (92.31%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQV+ERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVVERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVP+VSAIKTDQIEVD+ET+DMLSALGM+DIPGIVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEVSAIKTDQIEVDKETIDMLSALGMSDIPGIVQV 120

Query: 121 DPT---VPQ-QVAFGLGGRGRRY 140
           DP    VPQ     G GG GRR+
Sbjct: 121 DPVAVLVPQFGFGRGAGGPGRRF 143

[Close]

BLAST of CmoCh06G005020 vs. TrEMBL
Match: A0A0S3STE4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G299000 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.5e-59
Identity = 121/140 (86.43%), Postives = 131/140 (93.57%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVP+VSAI+TDQIEVD+ET+DML+ALGM+D+PG+V+V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEVSAIRTDQIEVDKETIDMLAALGMSDVPGVVKV 120

Query: 121 DPTVPQ-QVAFGLGGRGRRY 140
           DP   Q   AFG G  GRRY
Sbjct: 121 DPVAVQAPPAFGRGAGGRRY 140

[Close]

BLAST of CmoCh06G005020 vs. TAIR10
Match: AT5G04800.1 (AT5G04800.1 Ribosomal S17 family protein)

HSP 1 Score: 219.9 bits (559), Expect = 9.6e-58
Identity = 116/141 (82.27%), Postives = 126/141 (89.36%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D PGI  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--TVPQQVAFGLGGRGRRY 140
           +P   +    AFG G   RRY
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY 141

[Close]

BLAST of CmoCh06G005020 vs. TAIR10
Match: AT2G04390.1 (AT2G04390.1 Ribosomal S17 family protein)

HSP 1 Score: 216.9 bits (551), Expect = 8.1e-57
Identity = 116/141 (82.27%), Postives = 125/141 (88.65%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D  GI  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 DP--TVPQQVAFGLGGRGRRY 140
           DP   +    AFG G   RRY
Sbjct: 121 DPQQAMAPIPAFGGGRAPRRY 141

[Close]

BLAST of CmoCh06G005020 vs. TAIR10
Match: AT2G05220.1 (AT2G05220.1 Ribosomal S17 family protein)

HSP 1 Score: 216.5 bits (550), Expect = 1.1e-56
Identity = 114/140 (81.43%), Postives = 123/140 (87.86%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKTD+I+VD+ETL+ML++LGM+D  GI  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 DPTVPQQVAFGLGGRG-RRY 140
           +P          GGR  RRY
Sbjct: 121 EPQQAMAPIAAFGGRAPRRY 140

[Close]

BLAST of CmoCh06G005020 vs. TAIR10
Match: AT3G10610.1 (AT3G10610.1 Ribosomal S17 family protein)

HSP 1 Score: 209.1 bits (531), Expect = 1.7e-54
Identity = 107/121 (88.43%), Postives = 116/121 (95.87%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIK D ++VD+ETL+ML++LGM+DI GI QV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 D 122
           +
Sbjct: 121 E 121

[Close]

BLAST of CmoCh06G005020 vs. NCBI nr
Match: gi|659084436|ref|XP_008442886.1| (PREDICTED: 40S ribosomal protein S17-like [Cucumis melo])

HSP 1 Score: 263.5 bits (672), Expect = 2.1e-67
Identity = 134/139 (96.40%), Postives = 137/139 (98.56%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVD+ETLDMLSALGM DIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVAFGLGGRGRRY 140
           DPTVPQQV FGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of CmoCh06G005020 vs. NCBI nr
Match: gi|449437440|ref|XP_004136500.1| (PREDICTED: 40S ribosomal protein S17-like [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 3.7e-67
Identity = 133/139 (95.68%), Postives = 137/139 (98.56%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVD+ETLDMLSALGM DIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVAFGLGGRGRRY 140
           DPTVPQQV FGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of CmoCh06G005020 vs. NCBI nr
Match: gi|356500621|ref|XP_003519130.1| (PREDICTED: 40S ribosomal protein S17-like [Glycine max])

HSP 1 Score: 241.5 bits (615), Expect = 8.7e-61
Identity = 124/140 (88.57%), Postives = 132/140 (94.29%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAI+TDQIEVD+ETLDML+ALGM+++PGIVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIRTDQIEVDKETLDMLAALGMSEVPGIVQV 120

Query: 121 DPTVPQ-QVAFGLGGRGRRY 140
           DP   Q  + FG GG GRRY
Sbjct: 121 DPVAVQAPLGFGRGGPGRRY 140

[Close]

BLAST of CmoCh06G005020 vs. NCBI nr
Match: gi|502141674|ref|XP_004504587.1| (PREDICTED: 40S ribosomal protein S17-like [Cicer arietinum])

HSP 1 Score: 240.4 bits (612), Expect = 1.9e-60
Identity = 123/141 (87.23%), Postives = 133/141 (94.33%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVA+IPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVP+VSAI+TDQIEVD+ETLDML+ALGM++IPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEVSAIRTDQIEVDKETLDMLAALGMSEIPGVVQV 120

Query: 121 DPTVPQQVAF--GLGGRGRRY 140
           DP   QQ+ F  G GG GRR+
Sbjct: 121 DPVPVQQIPFGRGAGGAGRRF 141

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BLAST of CmoCh06G005020 vs. NCBI nr
Match: gi|255578977|ref|XP_002530341.1| (PREDICTED: 40S ribosomal protein S17 [Ricinus communis])

HSP 1 Score: 237.3 bits (604), Expect = 1.6e-59
Identity = 126/143 (88.11%), Postives = 132/143 (92.31%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQV+ERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVVERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120
           IQKGPVRGISLKLQEEERERRMDFVP+VSAIKTDQIEVD+ET+DMLSALGM+DIPGIVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEVSAIKTDQIEVDKETIDMLSALGMSDIPGIVQV 120

Query: 121 DPT---VPQ-QVAFGLGGRGRRY 140
           DP    VPQ     G GG GRR+
Sbjct: 121 DPVAVLVPQFGFGRGAGGPGRRF 143

The following BLAST results are available for this feature:

BLAST of CmoCh06G005020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS17_SOLLC	1.2e-57	83.45	40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3	[more]
RS174_ARATH	1.7e-56	82.27	40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3	[more]
RS171_ARATH	1.4e-55	82.27	40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=2 SV=3	[more]
RS172_ARATH	1.9e-55	81.43	40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3	[more]
RS173_ARATH	3.0e-53	88.43	40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3	[more]

BLAST of CmoCh06G005020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB02_CUCSA	2.5e-67	95.68	40S ribosomal protein S17 OS=Cucumis sativus GN=Csa_3G778310 PE=3 SV=1	[more]
I1JGK9_SOYBN	6.1e-61	88.57	Uncharacterized protein OS=Glycine max GN=GLYMA_02G200300 PE=3 SV=1	[more]
I3SPL5_MEDTR	1.1e-59	85.42	40S ribosomal protein S17 OS=Medicago truncatula GN=MTR_1g058250 PE=2 SV=1	[more]
B9SWH2_RICCO	1.1e-59	88.11	40S ribosomal protein S17, putative OS=Ricinus communis GN=RCOM_0293410 PE=3 SV=...	[more]
A0A0S3STE4_PHAAN	1.5e-59	86.43	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G299000 PE=...	[more]

BLAST of CmoCh06G005020 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04800.1	9.6e-58	82.27	Ribosomal S17 family protein	[more]
AT2G04390.1	8.1e-57	82.27	Ribosomal S17 family protein	[more]
AT2G05220.1	1.1e-56	81.43	Ribosomal S17 family protein	[more]
AT3G10610.1	1.7e-54	88.43	Ribosomal S17 family protein	[more]

BLAST of CmoCh06G005020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084436\|ref\|XP_008442886.1\|	2.1e-67	96.40	PREDICTED: 40S ribosomal protein S17-like [Cucumis melo]	[more]
gi\|449437440\|ref\|XP_004136500.1\|	3.7e-67	95.68	PREDICTED: 40S ribosomal protein S17-like [Cucumis sativus]	[more]
gi\|356500621\|ref\|XP_003519130.1\|	8.7e-61	88.57	PREDICTED: 40S ribosomal protein S17-like [Glycine max]	[more]
gi\|502141674\|ref\|XP_004504587.1\|	1.9e-60	87.23	PREDICTED: 40S ribosomal protein S17-like [Cicer arietinum]	[more]
gi\|255578977\|ref\|XP_002530341.1\|	1.6e-59	88.11	PREDICTED: 40S ribosomal protein S17 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001210	Ribosomal_S17e
IPR018273	Ribosomal_S17e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0000028	ribosomal small subunit assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G005020.1	CmoCh06G005020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001210	Ribosomal protein S17e	GENE3D	G3DSA:1.10.60.20		coord: 1..62 score: 4.3
IPR001210	Ribosomal protein S17e	HAMAP	MF_00511	Ribosomal_S17e	coord: 1..63 score: 19
IPR001210	Ribosomal protein S17e	PANTHER	PTHR10732	40S RIBOSOMAL PROTEIN S17	coord: 1..138 score: 4.1E
IPR001210	Ribosomal protein S17e	PFAM	PF00833	Ribosomal_S17e	coord: 1..115 score: 1.7
IPR001210	Ribosomal protein S17e	unknown	SSF116820	Rps17e-like	coord: 1..62 score: 1.57
IPR018273	Ribosomal protein S17e, conserved site	PROSITE	PS00712	RIBOSOMAL_S17E	coord: 41..56 scor
None	No IPR available	PANTHER	PTHR10732:SF2	SUBFAMILY NOT NAMED	coord: 1..138 score: 4.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G005020	Cucsa.241540	Cucumber (Gy14) v1	cgycmoB0681
CmoCh06G005020	CmaCh06G004990	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G005020	Cla017656	Watermelon (97103) v1	cmowmB782
CmoCh06G005020	Csa3G778310	Cucumber (Chinese Long) v2	cmocuB808
CmoCh06G005020	MELO3C009509	Melon (DHL92) v3.5.1	cmomeB747
CmoCh06G005020	ClCG10G018590	Watermelon (Charleston Gray)	cmowcgB729
CmoCh06G005020	CSPI03G35310	Wild cucumber (PI 183967)	cmocpiB816
CmoCh06G005020	Lsi03G018550	Bottle gourd (USVL1VR-Ls)	cmolsiB747
CmoCh06G005020	Cp4.1LG08g09790	Cucurbita pepo (Zucchini)	cmocpeB797
CmoCh06G005020	MELO3C009509.2	Melon (DHL92) v3.6.1	cmomedB849
CmoCh06G005020	Cla97C10G201590	Watermelon (97103) v2	cmowmbB818
CmoCh06G005020	Bhi11G002030	Wax gourd	cmowgoB0988
CmoCh06G005020	CsGy3G032790	Cucumber (Gy14) v2	cgybcmoB402
CmoCh06G005020	Carg25892	Silver-seed gourd	carcmoB0835

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G005020	Cucumber (Gy14) v2	cgybcmoB130
CmoCh06G005020	Cucumber (Gy14) v2	cgybcmoB833
CmoCh06G005020	Cucumber (Gy14) v2	cgybcmoB837
CmoCh06G005020	Melon (DHL92) v3.6.1	cmomedB856
CmoCh06G005020	Melon (DHL92) v3.6.1	cmomedB867
CmoCh06G005020	Silver-seed gourd	carcmoB0337
CmoCh06G005020	Silver-seed gourd	carcmoB0351
CmoCh06G005020	Silver-seed gourd	carcmoB0562
CmoCh06G005020	Silver-seed gourd	carcmoB1099
CmoCh06G005020	Silver-seed gourd	carcmoB1239
CmoCh06G005020	Cucumber (Chinese Long) v3	cmocucB0951
CmoCh06G005020	Cucumber (Chinese Long) v3	cmocucB0954
CmoCh06G005020	Cucumber (Chinese Long) v3	cmocucB0979
CmoCh06G005020	Cucumber (Chinese Long) v3	cmocucB0982
CmoCh06G005020	Watermelon (97103) v2	cmowmbB811
CmoCh06G005020	Watermelon (97103) v2	cmowmbB827
CmoCh06G005020	Watermelon (97103) v2	cmowmbB832
CmoCh06G005020	Wax gourd	cmowgoB1025
CmoCh06G005020	Wax gourd	cmowgoB1032
CmoCh06G005020	Cucurbita moschata (Rifu)	cmocmoB222
CmoCh06G005020	Cucurbita moschata (Rifu)	cmocmoB423
CmoCh06G005020	Cucurbita moschata (Rifu)	cmocmoB454
CmoCh06G005020	Cucurbita moschata (Rifu)	cmocmoB483
CmoCh06G005020	Cucumber (Gy14) v1	cgycmoB0149
CmoCh06G005020	Cucumber (Gy14) v1	cgycmoB0536
CmoCh06G005020	Cucurbita maxima (Rimu)	cmacmoB268
CmoCh06G005020	Cucurbita maxima (Rimu)	cmacmoB570
CmoCh06G005020	Cucurbita maxima (Rimu)	cmacmoB665
CmoCh06G005020	Cucurbita maxima (Rimu)	cmacmoB874
CmoCh06G005020	Wild cucumber (PI 183967)	cmocpiB810
CmoCh06G005020	Wild cucumber (PI 183967)	cmocpiB838
CmoCh06G005020	Wild cucumber (PI 183967)	cmocpiB842
CmoCh06G005020	Cucumber (Chinese Long) v2	cmocuB828
CmoCh06G005020	Cucumber (Chinese Long) v2	cmocuB832
CmoCh06G005020	Melon (DHL92) v3.5.1	cmomeB754
CmoCh06G005020	Melon (DHL92) v3.5.1	cmomeB763
CmoCh06G005020	Watermelon (Charleston Gray)	cmowcgB739
CmoCh06G005020	Watermelon (Charleston Gray)	cmowcgB742
CmoCh06G005020	Watermelon (97103) v1	cmowmB797
CmoCh06G005020	Watermelon (97103) v1	cmowmB799
CmoCh06G005020	Cucurbita pepo (Zucchini)	cmocpeB761
CmoCh06G005020	Cucurbita pepo (Zucchini)	cmocpeB774
CmoCh06G005020	Cucurbita pepo (Zucchini)	cmocpeB782
CmoCh06G005020	Cucurbita pepo (Zucchini)	cmocpeB783
CmoCh06G005020	Bottle gourd (USVL1VR-Ls)	cmolsiB737
CmoCh06G005020	Bottle gourd (USVL1VR-Ls)	cmolsiB740