Bhi11G002030 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G002030
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	40S ribosomal protein S17-like
Location	chr11 : 65716362 .. 65716781 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGCGTTCGAACCAAAACAGTGAAAAAATCTTCCCGTCAAGTTATTGAGCGTTACTACTCGCGCATGACCCTAGACTTCCATACGAACAAGAAGATCCTCGAAGAAGTCGCCATTATTCCCTCTAAGAGGCTACGAAATAAGATCGCCGGATTCTCCACTCACCTAATGAAGCGGATCCAGAAGGGACCTGTTCGCGGCATCTCTCTGAAACTTCAAGAGGAAGAGCGCGAGCGCCGTATGGACTTCGTCCCCGACATCTCCGCCGTTAAAACCGATCAAATCGAGGTCGACAAGGAGACTCTCGATATGCTTTCTGCGCTGGGAATGAACGATATTCCTGGGCTTGTCCAGGTCGATCCGACTGTTCCGCAGCAGGTTGGATTTGGATTGGGAGGTCGCGGTAGGAGGTACTGA

mRNA sequence

ATGGGTCGCGTTCGAACCAAAACAGTGAAAAAATCTTCCCGTCAAGTTATTGAGCGTTACTACTCGCGCATGACCCTAGACTTCCATACGAACAAGAAGATCCTCGAAGAAGTCGCCATTATTCCCTCTAAGAGGCTACGAAATAAGATCGCCGGATTCTCCACTCACCTAATGAAGCGGATCCAGAAGGGACCTGTTCGCGGCATCTCTCTGAAACTTCAAGAGGAAGAGCGCGAGCGCCGTATGGACTTCGTCCCCGACATCTCCGCCGTTAAAACCGATCAAATCGAGGTCGACAAGGAGACTCTCGATATGCTTTCTGCGCTGGGAATGAACGATATTCCTGGGCTTGTCCAGGTCGATCCGACTGTTCCGCAGCAGGTTGGATTTGGATTGGGAGGTCGCGGTAGGAGGTACTGA

Coding sequence (CDS)

ATGGGTCGCGTTCGAACCAAAACAGTGAAAAAATCTTCCCGTCAAGTTATTGAGCGTTACTACTCGCGCATGACCCTAGACTTCCATACGAACAAGAAGATCCTCGAAGAAGTCGCCATTATTCCCTCTAAGAGGCTACGAAATAAGATCGCCGGATTCTCCACTCACCTAATGAAGCGGATCCAGAAGGGACCTGTTCGCGGCATCTCTCTGAAACTTCAAGAGGAAGAGCGCGAGCGCCGTATGGACTTCGTCCCCGACATCTCCGCCGTTAAAACCGATCAAATCGAGGTCGACAAGGAGACTCTCGATATGCTTTCTGCGCTGGGAATGAACGATATTCCTGGGCTTGTCCAGGTCGATCCGACTGTTCCGCAGCAGGTTGGATTTGGATTGGGAGGTCGCGGTAGGAGGTACTGA

Protein sequence

MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQVDPTVPQQVGFGLGGRGRRY

Homology

[Close]

BLAST of Bhi11G002030 vs. Swiss-Prot
Match: sp|P49215|RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3)

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-57
Identity = 121/145 (83.45%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SA+KTD IEVDKETLDMLSALGM+D+PG+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVK- 120

Query: 121 DPTVPQQV------GFGLGGRGRRY 140
               PQ V      G G GG GR+Y
Sbjct: 121 QAAEPQAVAALPSYGRGGGGFGRKY 144

[Close]

BLAST of Bhi11G002030 vs. Swiss-Prot
Match: sp|Q9LZ17|RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3)

HSP 1 Score: 217.6 bits (553), Expect = 8.6e-56
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SA+KTD+I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--TVPQQVGFGLGGRGRRY 140
           +P   +     FG G   RRY
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY 141

[Close]

BLAST of Bhi11G002030 vs. Swiss-Prot
Match: sp|P49205|RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3)

HSP 1 Score: 214.5 bits (545), Expect = 7.3e-55
Identity = 114/141 (80.85%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SA+KTD+I+VDKETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 DP--TVPQQVGFGLGGRGRRY 140
           DP   +     FG G   RRY
Sbjct: 121 DPQQAMAPIPAFGGGRAPRRY 141

[Close]

BLAST of Bhi11G002030 vs. Swiss-Prot
Match: sp|Q9SJ36|RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3)

HSP 1 Score: 214.5 bits (545), Expect = 7.3e-55
Identity = 113/140 (80.71%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SA+KTD+I+VDKETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 DPTVPQQVGFGLGGRG-RRY 140
           +P          GGR  RRY
Sbjct: 121 EPQQAMAPIAAFGGRAPRRY 140

[Close]

BLAST of Bhi11G002030 vs. Swiss-Prot
Match: sp|Q9SQZ1|RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3)

HSP 1 Score: 209.1 bits (531), Expect = 3.1e-53
Identity = 106/121 (87.60%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SA+K D ++VDKETL+ML++LGM+DI G+ QV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 D 122
           +
Sbjct: 121 E 121

[Close]

BLAST of Bhi11G002030 vs. TAIR10
Match: AT5G04800.1 (Ribosomal S17 family protein)

HSP 1 Score: 217.6 bits (553), Expect = 4.8e-57
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SA+KTD+I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP--TVPQQVGFGLGGRGRRY 140
           +P   +     FG G   RRY
Sbjct: 121 EPQQAMAPIAAFGGGRAPRRY 141

[Close]

BLAST of Bhi11G002030 vs. TAIR10
Match: AT2G05220.1 (Ribosomal S17 family protein)

HSP 1 Score: 214.5 bits (545), Expect = 4.0e-56
Identity = 113/140 (80.71%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SA+KTD+I+VDKETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 DPTVPQQVGFGLGGRG-RRY 140
           +P          GGR  RRY
Sbjct: 121 EPQQAMAPIAAFGGRAPRRY 140

[Close]

BLAST of Bhi11G002030 vs. TAIR10
Match: AT2G04390.1 (Ribosomal S17 family protein)

HSP 1 Score: 214.5 bits (545), Expect = 4.0e-56
Identity = 114/141 (80.85%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SA+KTD+I+VDKETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 DP--TVPQQVGFGLGGRGRRY 140
           DP   +     FG G   RRY
Sbjct: 121 DPQQAMAPIPAFGGGRAPRRY 141

[Close]

BLAST of Bhi11G002030 vs. TAIR10
Match: AT3G10610.1 (Ribosomal S17 family protein)

HSP 1 Score: 209.1 bits (531), Expect = 1.7e-54
Identity = 106/121 (87.60%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SA+K D ++VDKETL+ML++LGM+DI G+ QV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 D 122
           +
Sbjct: 121 E 121

[Close]

BLAST of Bhi11G002030 vs. TrEMBL
Match: tr|A0A1S3B6R7|A0A1S3B6R7_CUCME (40S ribosomal protein S17-like OS=Cucumis melo OX=3656 GN=LOC103486651 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 6.6e-69
Identity = 136/139 (97.84%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD+SA+KT+QIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLGGRGRRY 140
           DPTVPQQVGFGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of Bhi11G002030 vs. TrEMBL
Match: tr|A0A0A0LB02|A0A0A0LB02_CUCSA (40S ribosomal protein S17 OS=Cucumis sativus OX=3659 GN=Csa_3G778310 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.1e-68
Identity = 135/139 (97.12%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD+SA+KT+QIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLGGRGRRY 140
           DPTVPQQVGFGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of Bhi11G002030 vs. TrEMBL
Match: tr|I1JGK9|I1JGK9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100819067 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.9e-61
Identity = 123/140 (87.86%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD+SA++TDQIEVDKETLDML+ALGM+++PG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIRTDQIEVDKETLDMLAALGMSEVPGIVQV 120

Query: 121 DPTVPQ-QVGFGLGGRGRRY 140
           DP   Q  +GFG GG GRRY
Sbjct: 121 DPVAVQAPLGFGRGGPGRRY 140

[Close]

BLAST of Bhi11G002030 vs. TrEMBL
Match: tr|A0A1S2YGS7|A0A1S2YGS7_CICAR (40S ribosomal protein S17-like OS=Cicer arietinum OX=3827 GN=LOC101514704 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 5.6e-60
Identity = 122/141 (86.52%), Postives = 133/141 (94.33%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVA+IPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVP++SA++TDQIEVDKETLDML+ALGM++IPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEVSAIRTDQIEVDKETLDMLAALGMSEIPGVVQV 120

Query: 121 DPTVPQQVGF--GLGGRGRRY 140
           DP   QQ+ F  G GG GRR+
Sbjct: 121 DPVPVQQIPFGRGAGGAGRRF 141

[Close]

BLAST of Bhi11G002030 vs. TrEMBL
Match: tr|B9SWH2|B9SWH2_RICCO (40S ribosomal protein S17, putative OS=Ricinus communis OX=3988 GN=RCOM_0293410 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 7.3e-60
Identity = 125/143 (87.41%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQV+ERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVVERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVP++SA+KTDQIEVDKET+DMLSALGM+DIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEVSAIKTDQIEVDKETIDMLSALGMSDIPGIVQV 120

Query: 121 DPT---VPQ-QVGFGLGGRGRRY 140
           DP    VPQ   G G GG GRR+
Sbjct: 121 DPVAVLVPQFGFGRGAGGPGRRF 143

[Close]

BLAST of Bhi11G002030 vs. NCBI nr
Match: XP_008442886.1 (PREDICTED: 40S ribosomal protein S17-like [Cucumis melo])

HSP 1 Score: 268.9 bits (686), Expect = 9.9e-69
Identity = 136/139 (97.84%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD+SA+KT+QIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLGGRGRRY 140
           DPTVPQQVGFGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of Bhi11G002030 vs. NCBI nr
Match: XP_004136500.1 (PREDICTED: 40S ribosomal protein S17-like [Cucumis sativus] >KGN59175.1 40S ribosomal protein S17 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 1.7e-68
Identity = 135/139 (97.12%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD+SA+KT+QIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLGGRGRRY 140
           DPTVPQQVGFGLGGRGRRY
Sbjct: 121 DPTVPQQVGFGLGGRGRRY 139

[Close]

BLAST of Bhi11G002030 vs. NCBI nr
Match: XP_023539023.1 (40S ribosomal protein S17-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.6 bits (675), Expect = 1.9e-67
Identity = 134/139 (96.40%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD+SA+KTDQIEVD+ETLDMLSALGM DIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGLVQV 120

Query: 121 DPTVPQQVGFGLGGRGRRY 140
           DPTVPQQV FGLGGRGRRY
Sbjct: 121 DPTVPQQVAFGLGGRGRRY 139

[Close]

BLAST of Bhi11G002030 vs. NCBI nr
Match: XP_022144698.1 (40S ribosomal protein S17-like [Momordica charantia])

HSP 1 Score: 264.2 bits (674), Expect = 2.4e-67
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD+SA+KTDQIEVDKETLDMLSALGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLGGR-GRRY 140
           DP+VPQQVGFGLGGR GRRY
Sbjct: 121 DPSVPQQVGFGLGGRGGRRY 140

[Close]

BLAST of Bhi11G002030 vs. NCBI nr
Match: XP_022938121.1 (40S ribosomal protein S17-like [Cucurbita moschata])

HSP 1 Score: 263.8 bits (673), Expect = 3.2e-67
Identity = 133/139 (95.68%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD+SA+KTDQIEVD+ETLDMLSALGM DIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120

Query: 121 DPTVPQQVGFGLGGRGRRY 140
           DPTVPQQV FGLGGRGRRY
Sbjct: 121 DPTVPQQVAFGLGGRGRRY 139

The following BLAST results are available for this feature:

BLAST of Bhi11G002030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P49215\|RS17_SOLLC	1.6e-57	83.45	40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3	[more]
sp\|Q9LZ17\|RS174_ARATH	8.6e-56	80.85	40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3	[more]
sp\|P49205\|RS171_ARATH	7.3e-55	80.85	40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3	[more]
sp\|Q9SJ36\|RS172_ARATH	7.3e-55	80.71	40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3	[more]
sp\|Q9SQZ1\|RS173_ARATH	3.1e-53	87.60	40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3	[more]

BLAST of Bhi11G002030 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04800.1	4.8e-57	80.85	Ribosomal S17 family protein	[more]
AT2G05220.1	4.0e-56	80.71	Ribosomal S17 family protein	[more]
AT2G04390.1	4.0e-56	80.85	Ribosomal S17 family protein	[more]
AT3G10610.1	1.7e-54	87.60	Ribosomal S17 family protein	[more]

BLAST of Bhi11G002030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B6R7\|A0A1S3B6R7_CUCME	6.6e-69	97.84	40S ribosomal protein S17-like OS=Cucumis melo OX=3656 GN=LOC103486651 PE=3 SV=1	[more]
tr\|A0A0A0LB02\|A0A0A0LB02_CUCSA	1.1e-68	97.12	40S ribosomal protein S17 OS=Cucumis sativus OX=3659 GN=Csa_3G778310 PE=3 SV=1	[more]
tr\|I1JGK9\|I1JGK9_SOYBN	3.9e-61	87.86	Uncharacterized protein OS=Glycine max OX=3847 GN=100819067 PE=3 SV=1	[more]
tr\|A0A1S2YGS7\|A0A1S2YGS7_CICAR	5.6e-60	86.52	40S ribosomal protein S17-like OS=Cicer arietinum OX=3827 GN=LOC101514704 PE=3 S...	[more]
tr\|B9SWH2\|B9SWH2_RICCO	7.3e-60	87.41	40S ribosomal protein S17, putative OS=Ricinus communis OX=3988 GN=RCOM_0293410 ...	[more]

BLAST of Bhi11G002030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442886.1	9.9e-69	97.84	PREDICTED: 40S ribosomal protein S17-like [Cucumis melo]	[more]
XP_004136500.1	1.7e-68	97.12	PREDICTED: 40S ribosomal protein S17-like [Cucumis sativus] >KGN59175.1 40S ribo...	[more]
XP_023539023.1	1.9e-67	96.40	40S ribosomal protein S17-like [Cucurbita pepo subsp. pepo]	[more]
XP_022144698.1	2.4e-67	97.14	40S ribosomal protein S17-like [Momordica charantia]	[more]
XP_022938121.1	3.2e-67	95.68	40S ribosomal protein S17-like [Cucurbita moschata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018273	Ribosomal_S17e_CS
IPR001210	Ribosomal_S17e
IPR036401	RPS17e-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006412	translation
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0030687	preribosome, large subunit precursor
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0043021	ribonucleoprotein complex binding
molecular_function	GO:0032549	ribonucleoside binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M002030	Bhi11M002030	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036401	Ribosomal protein S17e-like superfamily	GENE3D	G3DSA:1.10.60.20		coord: 1..62 e-value: 9.6E-35 score: 120.0
IPR036401	Ribosomal protein S17e-like superfamily	SUPERFAMILY	SSF116820	Rps17e-like	coord: 1..62
IPR001210	Ribosomal protein S17e	PFAM	PF00833	Ribosomal_S17e	coord: 1..116 e-value: 1.1E-59 score: 199.7
IPR001210	Ribosomal protein S17e	PANTHER	PTHR10732	40S RIBOSOMAL PROTEIN S17	coord: 1..131
IPR001210	Ribosomal protein S17e	HAMAP	MF_00511	Ribosomal_S17e	coord: 1..63 score: 19.982
None	No IPR available	PANTHER	PTHR10732:SF2	SUBFAMILY NOT NAMED	coord: 1..131
IPR018273	Ribosomal protein S17e, conserved site	PROSITE	PS00712	RIBOSOMAL_S17E	coord: 41..56

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi11G002030	Csa3G778310	Cucumber (Chinese Long) v2	cuwgoB238
Bhi11G002030	MELO3C009509	Melon (DHL92) v3.5.1	mewgoB375
Bhi11G002030	ClCG10G018590	Watermelon (Charleston Gray)	wcgwgoB082
Bhi11G002030	CSPI03G35310	Wild cucumber (PI 183967)	cpiwgoB240
Bhi11G002030	Cucsa.241540	Cucumber (Gy14) v1	cgywgoB484
Bhi11G002030	CmaCh06G004990	Cucurbita maxima (Rimu)	cmawgoB0990
Bhi11G002030	CmoCh06G005020	Cucurbita moschata (Rifu)	cmowgoB0988
Bhi11G002030	Lsi03G018550	Bottle gourd (USVL1VR-Ls)	lsiwgoB294
Bhi11G002030	Cp4.1LG08g09790	Cucurbita pepo (Zucchini)	cpewgoB1075
Bhi11G002030	CsGy3G032790	Cucumber (Gy14) v2	cgybwgoB228
Bhi11G002030	MELO3C009509.2	Melon (DHL92) v3.6.1	medwgoB376
Bhi11G002030	Carg25892	Silver-seed gourd	carwgoB0726
Bhi11G002030	CsaV3_3G037670	Cucumber (Chinese Long) v3	cucwgoB243
Bhi11G002030	Cla017656	Watermelon (97103) v1	wgowmB011
Bhi11G002030	Cla97C10G201590	Watermelon (97103) v2	wgowmbB005

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G002030	Cucurbita maxima (Rimu)	cmawgoB0292
Bhi11G002030	Cucurbita maxima (Rimu)	cmawgoB0978
Bhi11G002030	Cucurbita moschata (Rifu)	cmowgoB0283
Bhi11G002030	Cucurbita moschata (Rifu)	cmowgoB0974
Bhi11G002030	Cucurbita pepo (Zucchini)	cpewgoB0745
Bhi11G002030	Cucurbita pepo (Zucchini)	cpewgoB0752
Bhi11G002030	Silver-seed gourd	carwgoB0317
Bhi11G002030	Silver-seed gourd	carwgoB0795