CmoCh06G004440 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G004440
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Ribosome production factor 2 like) (6.1.1.9)
Location	Cmo_Chr06 : 2130684 .. 2133142 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCCTAACGTTCAGGACGACCACCTCAAAAAGTTCACCAAAATCGGCGTCAGCTTGCAGTCGCCGGAACGGTCGATATTTCTCTGCTAGTTGAGCAACAAAACCCTAAATCTCATCTCTGTTATCTCACTGGCCGTGGACCATGTTGAAAGTTAGAACTCCCAAGAATGGTAAAGTTAAACGAGAGCTTGAGAAACGTGCTCCCAAACTTGTAAGTTCTTGCATTCCCGGATATGTATATCTCTCAATGCGTGTGGAAAATGAGAGTGTCTGCTTAATGATTGATTTAAAAGCATGTCAAAGAAGTTTTTATGATCTTTTCAATTGTTGTTTTTTCTGTATTGATGAATTTAAGTTATTGACTTGAACTGCAGGTTGAGACGGGGAAGAAGACGCTGATACTTCATGGCACTAAAACGAGCGGCGTGTTGAATGAAGTATTGACGGAAATTTATCACCTGAAGAAAGAAAGTGCCGTGAAGTATTCTCGTAGGAATGAAGGAATTAAACCATTTGAAAATGGCGGCGATTCATCTTTGGAATTTTTCTCTCTCAAAACTGATTGCAGTATTATCGTGGTGCGTAACACTGTGAATGATTTCAGTTTTTAATTACGATTCAGTTTTCCCATTCGAAGGTATTTTATTTACTGTTCATCACAAAGAATGATTTCATGTGATACTAGTTCCAGATGCGTAGAGCTTTGTGTAAAACTTGATTTTTTTGGATGAGCACCTCTAGTTTTCCCCTTAATGATCTTTAGATGTCTTCAATGATCGAAGAACTTAGCAGTTCTAAGACAGATGAACCTATGTAAATTAGCATAGTCATGACGTGCATTTTTTTTTGGGTAAGTTGAGCTACTAAGAATTTTGAGATCTTCAATTCATGACGCTGTTGGATGATGAAAGTCCCACGTCGTCGGCTAATTTAGGGAATGATCATGGGTTTATAATCAAAGAATACTATCTTCATTGGTACGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTAATGCTCAAAGTGGACAATATCATACTATTGTGGAGAGTCGTGTTCATCTATTTTTTTTAATTGGAAAGCCTTTGTCTTCATGGGTTCAAGTTCTGTATCTTTTTTCCTCTGCTATTATAGAGTATGAGAGCGGGTACATTGCTTCACTCCTAAATGTCCATGGTAACCAGCTTCTTGCTTCTATGTCTCCAGCTATTTATTGATGTATTTATTGCACCTCTTTTGCAGTATGGTTCTCACTCAAAGAAACGACCCGATAATCTTGTAATAGCGAGAACCTATGATCATCACATCTATGATCTAGTTGAGGTTGGGATTGAAAATTTCAAGTCAATGCATTCTTTCACATATGATAAGAAACTTTCTCCACGGGTCGGGTCAAAGCCTTTCATTACTTTCATTGGCGAAGGATTTGAGAATGTGGAAGAGCTGAAGCATTTAAAAGAAGTTTTGCTTGATATGTTCCGTGGAGAGGTATAAAACCCTGCAGCTTTGCCTGACTTGAACGTGAATGTTTAGATATTAAGTATCTATGTTATTTGCAGGTTGTGGAGAATATAAATCTTGCTGGGTTGGACCGTGTATATGTATGTACAGCCATCTCACCAAATAAAGTATTTCTCACTCATTGTGCACTGCGAATGAAGAAGTCAGGTTCAGTAGTTCCTAGAATGGAACTAGTTGAAGTCGGTCCTTCAATGGATTTGGTGGTTCGCCGGCACCGGCTGCCTAGTGATGGTCTAAGGAAGGAAGCCATGAAAACAGCCAAGGATCAGGCTAAGAAGAAGGTTTAATGGCTATCTCTGAAATGAATTGCCTTCATTTTGTTTACTAAGCTGTTCGTCTAATCTTTATGTGTTTACTTTCTTCTAGGAGAAAAATGTGAGTCAGGATGCAATTCATGGCAAGATTGGAAGGATATATATTCCTGATCAAAAGGTATCTCTCTCTCTCTATCTGTATGTGTTCTCTCCAACTGTCACAATGCTTGCAAATCCAGCTGAGATTGAAAATGTTTCATGTTATCAAACTCCACACGTTCATCACCAAAATAGGAACTTAACTACACCTCGCACAGTTTTGTCAGTCATTTGAATTATTCAATACTCAATTTTGGCTCATAGGTTGGAGATGTGGCTCTACCCGACAAATCAAAGGGAGTGAAGAGAGAACGATGCGAAGCGAAAATGAAAAACAGAGATAACGGGCCAGCCTCTAAAAAACAAAAAGAAGATTCAGAAAAACCAAAAGAAGATTCAGAATAGTTCAACTAGTCTAATACTGTTCGACCCAATTCTCTTCTTACTAGAGTCGCTGTTATGAAATGCATAGTAGCTTGCCAATTATGTGGACAGAGCAGACACTATTTATTTGCGTGTATACAATTTTGCCTATGGTTTCCAATTTGATTTTACATGCAAACCTGCCTTTTATCA

mRNA sequence

AAACCCTAACGTTCAGGACGACCACCTCAAAAAGTTCACCAAAATCGGCGTCAGCTTGCAGTCGCCGGAACGGTCGATATTTCTCTGCTAGTTGAGCAACAAAACCCTAAATCTCATCTCTGTTATCTCACTGGCCGTGGACCATGTTGAAAGTTAGAACTCCCAAGAATGGTAAAGTTAAACGAGAGCTTGAGAAACGTGCTCCCAAACTTGTTGAGACGGGGAAGAAGACGCTGATACTTCATGGCACTAAAACGAGCGGCGTGTTGAATGAAGTATTGACGGAAATTTATCACCTGAAGAAAGAAAGTGCCGTGAAGTATTCTCGTAGGAATGAAGGAATTAAACCATTTGAAAATGGCGGCGATTCATCTTTGGAATTTTTCTCTCTCAAAACTGATTGCAGTATTATCGTGTATGGTTCTCACTCAAAGAAACGACCCGATAATCTTGTAATAGCGAGAACCTATGATCATCACATCTATGATCTAGTTGAGGTTGGGATTGAAAATTTCAAGTCAATGCATTCTTTCACATATGATAAGAAACTTTCTCCACGGGTCGGGTCAAAGCCTTTCATTACTTTCATTGGCGAAGGATTTGAGAATGTGGAAGAGCTGAAGCATTTAAAAGAAGTTTTGCTTGATATGTTCCGTGGAGAGGTTGTGGAGAATATAAATCTTGCTGGGTTGGACCGTGTATATGTATGTACAGCCATCTCACCAAATAAAGTATTTCTCACTCATTGTGCACTGCGAATGAAGAAGTCAGGTTCAGTAGTTCCTAGAATGGAACTAGTTGAAGTCGGTCCTTCAATGGATTTGGTGGTTCGCCGGCACCGGCTGCCTAGTGATGGTCTAAGGAAGGAAGCCATGAAAACAGCCAAGGATCAGGCTAAGAAGAAGGAGAAAAATGTGAGTCAGGATGCAATTCATGGCAAGATTGGAAGGATATATATTCCTGATCAAAAGGTTGGAGATGTGGCTCTACCCGACAAATCAAAGGGAGTGAAGAGAGAACGATGCGAAGCGAAAATGAAAAACAGAGATAACGGGCCAGCCTCTAAAAAACAAAAAGAAGATTCAGAAAAACCAAAAGAAGATTCAGAATAGTTCAACTAGTCTAATACTGTTCGACCCAATTCTCTTCTTACTAGAGTCGCTGTTATGAAATGCATAGTAGCTTGCCAATTATGTGGACAGAGCAGACACTATTTATTTGCGTGTATACAATTTTGCCTATGGTTTCCAATTTGATTTTACATGCAAACCTGCCTTTTATCA

Coding sequence (CDS)

ATGTTGAAAGTTAGAACTCCCAAGAATGGTAAAGTTAAACGAGAGCTTGAGAAACGTGCTCCCAAACTTGTTGAGACGGGGAAGAAGACGCTGATACTTCATGGCACTAAAACGAGCGGCGTGTTGAATGAAGTATTGACGGAAATTTATCACCTGAAGAAAGAAAGTGCCGTGAAGTATTCTCGTAGGAATGAAGGAATTAAACCATTTGAAAATGGCGGCGATTCATCTTTGGAATTTTTCTCTCTCAAAACTGATTGCAGTATTATCGTGTATGGTTCTCACTCAAAGAAACGACCCGATAATCTTGTAATAGCGAGAACCTATGATCATCACATCTATGATCTAGTTGAGGTTGGGATTGAAAATTTCAAGTCAATGCATTCTTTCACATATGATAAGAAACTTTCTCCACGGGTCGGGTCAAAGCCTTTCATTACTTTCATTGGCGAAGGATTTGAGAATGTGGAAGAGCTGAAGCATTTAAAAGAAGTTTTGCTTGATATGTTCCGTGGAGAGGTTGTGGAGAATATAAATCTTGCTGGGTTGGACCGTGTATATGTATGTACAGCCATCTCACCAAATAAAGTATTTCTCACTCATTGTGCACTGCGAATGAAGAAGTCAGGTTCAGTAGTTCCTAGAATGGAACTAGTTGAAGTCGGTCCTTCAATGGATTTGGTGGTTCGCCGGCACCGGCTGCCTAGTGATGGTCTAAGGAAGGAAGCCATGAAAACAGCCAAGGATCAGGCTAAGAAGAAGGAGAAAAATGTGAGTCAGGATGCAATTCATGGCAAGATTGGAAGGATATATATTCCTGATCAAAAGGTTGGAGATGTGGCTCTACCCGACAAATCAAAGGGAGTGAAGAGAGAACGATGCGAAGCGAAAATGAAAAACAGAGATAACGGGCCAGCCTCTAAAAAACAAAAAGAAGATTCAGAAAAACCAAAAGAAGATTCAGAATAG

Homology

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BLAST of CmoCh06G004440 vs. Swiss-Prot
Match: RPF2_ARATH (Ribosome production factor 2 homolog OS=Arabidopsis thaliana GN=At3g23620 PE=2 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 3.9e-128
Identity = 225/315 (71.43%), Postives = 271/315 (86.03%), Query Frame = 1


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           M+++RTPK GK KR LE RAPKLVETGKKTLILHGTKTS  L+ V+TE+Y LKK  A++Y
Sbjct: 1   MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVG 120
           SRRNE I+PFE+GG++SLEFFS KTDCSI VYGSH+KKRPDNLV+ R YDH +YDL+EVG
Sbjct: 61  SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180
           IENFKS+ +F+YDKK +P  G+KPFI FIGEGFENV ELKHLKEVL D+FRGEVV+N+NL
Sbjct: 121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
            GLDR YVC+AISP KVFLTHCAL++KKSGS+VPRMELVEVGPSMDLV+RR+RLP+D L 
Sbjct: 181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKN 300
           KEAM+T+KD+ KKKEKNV QDA+ GK G+IY+PDQK+ ++ L DKSKG KRER +AK+K+
Sbjct: 241 KEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKDAKLKH 300

Query: 301 RDNGPASKKQKEDSE 316
           ++    +KK K  SE
Sbjct: 301 KEE-TVAKKMKVSSE 314

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BLAST of CmoCh06G004440 vs. Swiss-Prot
Match: RPF2_ORYSJ (Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica GN=Os01g0513800 PE=2 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 2.7e-121
Identity = 216/312 (69.23%), Postives = 273/312 (87.50%), Query Frame = 1


Query: 4   VRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKYSRR 63
           +R P++ + KREL K APKLVETGKKTLILHGTKTS VLN VL +++HLK+++AVKYS++
Sbjct: 5   IRVPRSQRAKRELLKHAPKLVETGKKTLILHGTKTSAVLNSVLADLFHLKRDNAVKYSKK 64

Query: 64  NEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVGIEN 123
           N+ I+PFE+GG++SLEFFSLKTDCS+IVYGSHSKKRP+NLV+ RTYDHHIYDLVEVG+EN
Sbjct: 65  NDNIRPFESGGETSLEFFSLKTDCSLIVYGSHSKKRPNNLVLGRTYDHHIYDLVEVGVEN 124

Query: 124 FKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINLAGL 183
           +KS+ S+ YDKKL+P++GSKPF  FIGE FE+VEELKHLKEVLLD+F+GEVVEN+NLAG+
Sbjct: 125 YKSIESYVYDKKLAPKLGSKPFFAFIGEHFESVEELKHLKEVLLDLFKGEVVENLNLAGV 184

Query: 184 DRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLRKEA 243
           DRV+VCTAISP  V++ HCALR+K+SG+ +PR+ELVEVGPSMDLVVRRHR P + L+KEA
Sbjct: 185 DRVFVCTAISPTTVYMMHCALRLKRSGTSIPRIELVEVGPSMDLVVRRHRYPVESLKKEA 244

Query: 244 MKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKNRDN 303
           MKTA D AKK  KNV++D +HGK+G++YIPDQ++  ++L +  KG+KRER EAK KN+D+
Sbjct: 245 MKTA-DHAKKM-KNVTKDPVHGKLGKVYIPDQQIAKMSLSNDVKGLKRERREAK-KNKDH 304

Query: 304 GPASKKQKEDSE 316
              SKKQK + E
Sbjct: 305 ---SKKQKINPE 310

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BLAST of CmoCh06G004440 vs. Swiss-Prot
Match: RPF2_MOUSE (Ribosome production factor 2 homolog OS=Mus musculus GN=Rpf2 PE=2 SV=2)

HSP 1 Score: 222.6 bits (566), Expect = 6.1e-57
Identity = 134/311 (43.09%), Postives = 190/311 (61.09%), Query Frame = 1


Query: 3   KVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKYSR 62
           KV  PK  + KR LEKR PKL E  K  +++ G   +  + +VL ++Y LKK   V Y +
Sbjct: 6   KVLKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKK 65

Query: 63  RNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVGIE 122
           +N   +PFE+   +SLEFFS K+DCS+ ++GSH+KKRP+NLVI R YD+H+ D++E+GIE
Sbjct: 66  KNI-TRPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 125

Query: 123 NFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINLAG 182
            F S+      K   P  G+KP + F G+ F+  E+ + LK +L+D FRG  V N+ LAG
Sbjct: 126 KFVSLKDIKTSK--CPE-GTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAG 185

Query: 183 LDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLRKE 242
           L+ V   TA++  KV+     L +KKSG   PR+EL E+GPS+DLV+RR  L SD L K 
Sbjct: 186 LEYVLHFTALN-GKVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVMRRTHLASDDLYKL 245

Query: 243 AMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKNRD 302
           +MK  K    KK KN+SQD      GRI++  Q +  +    K KG+K+   E  +   D
Sbjct: 246 SMKVPKALKPKKRKNISQDTFGTTFGRIHMQKQDLSKLQ-TRKMKGLKKRPAENGVD--D 305

Query: 303 NGPASKKQKED 314
            G  SK+ K++
Sbjct: 306 QGKKSKRIKKN 306

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BLAST of CmoCh06G004440 vs. Swiss-Prot
Match: RPF2_BOVIN (Ribosome production factor 2 homolog OS=Bos taurus GN=RPF2 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.9e-56
Identity = 131/311 (42.12%), Postives = 192/311 (61.74%), Query Frame = 1


Query: 3   KVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKYSR 62
           +V  PK  + KR LEKR PKL E  K  +++ G   +  + +VL ++Y LKK   + Y +
Sbjct: 6   RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKK 65

Query: 63  RNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVGIE 122
           +N   +PFE+   +SLEFFS K+DCS+ ++GSH+KKRP+NLVI R YD+H+ D++E+GIE
Sbjct: 66  KNI-TRPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDIIELGIE 125

Query: 123 NFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINLAG 182
            F S+      K   P  G+KP + F G+ F+  E+ + LK +L+D FRG  V NI LAG
Sbjct: 126 KFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 185

Query: 183 LDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLRKE 242
           L+ V   TA++  K++     L +KKSG   PR+EL E+GPS+DLV+RR  L SD L K 
Sbjct: 186 LEYVLHFTALN-GKIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 245

Query: 243 AMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKNRD 302
           +MK  K    KK+KN+S D      GRI++  Q +  +    K KG+K+   E K ++ +
Sbjct: 246 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQ-TRKMKGLKKRPAERKAEDEE 305

Query: 303 NGPASKKQKED 314
           N   SK+ K++
Sbjct: 306 N--KSKRIKKN 306

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BLAST of CmoCh06G004440 vs. Swiss-Prot
Match: RPF2_HUMAN (Ribosome production factor 2 homolog OS=Homo sapiens GN=RPF2 PE=1 SV=2)

HSP 1 Score: 217.2 bits (552), Expect = 2.6e-55
Identity = 132/311 (42.44%), Postives = 191/311 (61.41%), Query Frame = 1


Query: 3   KVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKYSR 62
           +V  PK  + KR LEKR PKL E  K  +++ G   +  + +VL ++Y LKK   V Y +
Sbjct: 6   RVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKK 65

Query: 63  RNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVGIE 122
           +N   +PFE+   +SLEFFS K+DCS+ ++GSH+KKRP+NLVI R YD+H+ D++E+GIE
Sbjct: 66  KNI-TRPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 125

Query: 123 NFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINLAG 182
           NF S+      K   P  G+KP + F G+ F+  E+ + LK +L+D FRG  V NI LAG
Sbjct: 126 NFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 185

Query: 183 LDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLRKE 242
           L+ V   TA++  K++     L +KKSG   PR+EL E+GPS+DLV+RR  L SD L K 
Sbjct: 186 LEYVLHFTALN-GKIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 245

Query: 243 AMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKNRD 302
           +MK  K    KK+KN+S D      GRI++  Q +  +    K KG+K+    A+    D
Sbjct: 246 SMKMPKALKPKKKKNISHDTFGTTYGRIHMQKQDLSKLQ-TRKMKGLKKR--PAERITED 305

Query: 303 NGPASKKQKED 314
           +   SK+ K++
Sbjct: 306 HEKKSKRIKKN 306

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BLAST of CmoCh06G004440 vs. TrEMBL
Match: A0A0A0LAR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G750370 PE=4 SV=1)

HSP 1 Score: 576.6 bits (1485), Expect = 1.8e-161
Identity = 291/322 (90.37%), Postives = 313/322 (97.20%), Query Frame = 1


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           ML++RTPKN KVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTE+YHLKKESAVKY
Sbjct: 1   MLQIRTPKNRKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTELYHLKKESAVKY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVG 120
           SR+N+GIKPFE+GGD+SLEFFSLKTDCSII+YGSHSKKRP+NLVIARTY+ HIYD+VEVG
Sbjct: 61  SRKNDGIKPFESGGDASLEFFSLKTDCSIILYGSHSKKRPNNLVIARTYNQHIYDMVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180
           IENFKSMHSF YDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLD FRGEVVEN+NL
Sbjct: 121 IENFKSMHSFAYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDFFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           +GLDRVYVCTAISPNKVFLTHCALR+KKSGSVVPRMELVEVGPSMD+V+RRHRLP+DGLR
Sbjct: 181 SGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLPTDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKN 300
           KEAMKTAKD+AKKKEKNVS+D I GKIGRIYIPDQKVGD+A+ DKSKGVKRER EAKMKN
Sbjct: 241 KEAMKTAKDKAKKKEKNVSKDIIQGKIGRIYIPDQKVGDMAIVDKSKGVKRERREAKMKN 300

Query: 301 RDNGPASKKQKEDSEKPKEDSE 323
           RD+GPASKK KEDSEKPKEDSE
Sbjct: 301 RDDGPASKKPKEDSEKPKEDSE 322

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BLAST of CmoCh06G004440 vs. TrEMBL
Match: D7TJ22_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03890 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 2.1e-141
Identity = 250/315 (79.37%), Postives = 288/315 (91.43%), Query Frame = 1


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           MLK++TPK+GK KRE+EKRAPKLVE+GKKTLIL GTKTS VLN VLTEIYHLKK+SAV+Y
Sbjct: 1   MLKIKTPKSGKAKREIEKRAPKLVESGKKTLILQGTKTSNVLNAVLTEIYHLKKDSAVRY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVG 120
           +R+NE I+PFE+GG++SLEFFSLKTDCSI V+GSHSKKRPDNLVI RTYDHHIYDLVEVG
Sbjct: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFVFGSHSKKRPDNLVIGRTYDHHIYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180
           +ENFKSM SFTYDKKLSP+VGSKPFI FIGEGFE+V+ELKHLKEVLLD+ RGEVVEN+NL
Sbjct: 121 VENFKSMESFTYDKKLSPKVGSKPFIAFIGEGFESVDELKHLKEVLLDLLRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AGLD  Y+CTA+S N+VF THCA+R+KKSG++VPRMELVEVGPSMDLVVRRHRLP+D +R
Sbjct: 181 AGLDHAYICTAVSSNRVFFTHCAMRLKKSGTIVPRMELVEVGPSMDLVVRRHRLPNDSVR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKN 300
           KEAMKTAK+Q KKK KNVSQD I GK+G+IY+PDQ+VG VALP K+KG+KRER EAKMK+
Sbjct: 241 KEAMKTAKEQPKKKVKNVSQDVIQGKVGKIYVPDQQVGSVALPYKAKGLKRERREAKMKH 300

Query: 301 RDNGPASKKQKEDSE 316
             N  A KKQKE+SE
Sbjct: 301 ETNDRAPKKQKENSE 315

[Close]

BLAST of CmoCh06G004440 vs. TrEMBL
Match: A0A0D2RBX2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G242600 PE=4 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 6.2e-141
Identity = 254/315 (80.63%), Postives = 290/315 (92.06%), Query Frame = 1


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           M+K++TPK G+VKREL+KRAPKLVETGKKTLIL GTKTSG+LN VL+EIYHLKK  AV++
Sbjct: 1   MMKIKTPKKGRVKRELDKRAPKLVETGKKTLILQGTKTSGILNSVLSEIYHLKKGGAVRF 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVG 120
           +R+N+ I+PFE+GG++SLEFFSLKTDCSI VYGSHSKKRP+NLVI R YDHH+YDLVEVG
Sbjct: 61  TRKNDNIRPFESGGETSLEFFSLKTDCSIFVYGSHSKKRPNNLVIGRMYDHHVYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180
           +ENFKS+ SFTYDKK++PRVGSKPFI FIGEGFENV+ELKHLKEVLLD+ RGEVVENINL
Sbjct: 121 VENFKSIESFTYDKKIAPRVGSKPFIAFIGEGFENVDELKHLKEVLLDLLRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AGLDR YVCTAIS NKV+LTHCALR+KKSG+VVPRMELVEVGPSMDLVVRRHRLP++GLR
Sbjct: 181 AGLDRAYVCTAISSNKVYLTHCALRLKKSGTVVPRMELVEVGPSMDLVVRRHRLPNEGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKN 300
           KEAMKTAKDQ KKK KNVS DAI G IG+IYIPDQKVG++ALP+K+KGVKRER EAK K+
Sbjct: 241 KEAMKTAKDQPKKKVKNVSSDAIQGTIGKIYIPDQKVGEMALPNKAKGVKRERREAKNKD 300

Query: 301 RDNGPASKKQKEDSE 316
             N  ASKKQKE+SE
Sbjct: 301 A-NEHASKKQKEESE 314

[Close]

BLAST of CmoCh06G004440 vs. TrEMBL
Match: A0A0B0NCP2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11166 PE=4 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 5.2e-140
Identity = 252/315 (80.00%), Postives = 289/315 (91.75%), Query Frame = 1


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           M+K++TPK G+VKREL+KRAPKLVETGKKTLIL GTKTSG LN VL+EIYHLKK  AV++
Sbjct: 1   MMKIKTPKKGRVKRELDKRAPKLVETGKKTLILQGTKTSGTLNSVLSEIYHLKKGGAVRF 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVG 120
           +R+N+ I+PFE+GG++SLEFFSLKTDCSI VYGSHSKKRP+NLV+ R YDHH+YDLVEVG
Sbjct: 61  TRKNDNIRPFESGGETSLEFFSLKTDCSIFVYGSHSKKRPNNLVLGRMYDHHVYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180
           +ENFKS+ SFTYDKK++PRVGSKPFI FIGEGFENV+ELKHLKEVLLD+ RGEVVENINL
Sbjct: 121 VENFKSIESFTYDKKIAPRVGSKPFIAFIGEGFENVDELKHLKEVLLDLLRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AGLDR Y+CTAIS NKV+LTHCALR+KKSG+VVPRMELVEVGPSMDLVVRRHRLP++GLR
Sbjct: 181 AGLDRAYICTAISSNKVYLTHCALRLKKSGTVVPRMELVEVGPSMDLVVRRHRLPNEGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKN 300
           KEAMKTAKDQ KKK KNVS DAI G IG+IYIPDQKVG++ALP+K+KGVKRER EAK K 
Sbjct: 241 KEAMKTAKDQPKKKVKNVSSDAIQGTIGKIYIPDQKVGEMALPNKAKGVKRERREAKNK- 300

Query: 301 RDNGPASKKQKEDSE 316
           + N  ASKKQKE+SE
Sbjct: 301 QANEHASKKQKEESE 314

[Close]

BLAST of CmoCh06G004440 vs. TrEMBL
Match: W9QQH6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013813 PE=4 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 8.9e-140
Identity = 245/316 (77.53%), Postives = 293/316 (92.72%), Query Frame = 1


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           MLK++TPK GK +REL+KRAPKLVETGKKTLILHGTKTSGVLN VLT+IY LKKESAV++
Sbjct: 1   MLKMKTPKTGKARRELDKRAPKLVETGKKTLILHGTKTSGVLNNVLTQIYQLKKESAVRF 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVG 120
           SR+NE ++PFE+GG++SLEFFSLKTDCS+ V+GSHSKKRPDNLVI RTYDHHIYDLVEVG
Sbjct: 61  SRKNEDVRPFESGGEASLEFFSLKTDCSMFVFGSHSKKRPDNLVIGRTYDHHIYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180
           +ENFK + SF+YDKKL+P+ GSKPFI FIGEGF++VEELKHLKEVLLD+ RGEVVEN+NL
Sbjct: 121 VENFKPLESFSYDKKLAPKAGSKPFIAFIGEGFDSVEELKHLKEVLLDLLRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AG+DR Y+CTA+SPN+VF THCALR+K+SG++VPRMELVEVGPSMD VVRRHRLP++ LR
Sbjct: 181 AGVDRAYICTAVSPNRVFFTHCALRLKRSGTIVPRMELVEVGPSMDFVVRRHRLPNERLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKN 300
           KEAMKTAKD+AKKKEKNVS+D I GKIG++YIPDQKVG++ALP+K+KGVKRER EAK+++
Sbjct: 241 KEAMKTAKDKAKKKEKNVSKDVIEGKIGKVYIPDQKVGEMALPNKAKGVKRERREAKLRH 300

Query: 301 RD-NGPASKKQKEDSE 316
            + N  ASK+QKEDS+
Sbjct: 301 GEGNKHASKRQKEDSQ 316

[Close]

BLAST of CmoCh06G004440 vs. TAIR10
Match: AT3G23620.1 (AT3G23620.1 Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 459.1 bits (1180), Expect = 2.2e-129
Identity = 225/315 (71.43%), Postives = 271/315 (86.03%), Query Frame = 1


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           M+++RTPK GK KR LE RAPKLVETGKKTLILHGTKTS  L+ V+TE+Y LKK  A++Y
Sbjct: 1   MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVG 120
           SRRNE I+PFE+GG++SLEFFS KTDCSI VYGSH+KKRPDNLV+ R YDH +YDL+EVG
Sbjct: 61  SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180
           IENFKS+ +F+YDKK +P  G+KPFI FIGEGFENV ELKHLKEVL D+FRGEVV+N+NL
Sbjct: 121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
            GLDR YVC+AISP KVFLTHCAL++KKSGS+VPRMELVEVGPSMDLV+RR+RLP+D L 
Sbjct: 181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKN 300
           KEAM+T+KD+ KKKEKNV QDA+ GK G+IY+PDQK+ ++ L DKSKG KRER +AK+K+
Sbjct: 241 KEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKDAKLKH 300

Query: 301 RDNGPASKKQKEDSE 316
           ++    +KK K  SE
Sbjct: 301 KEE-TVAKKMKVSSE 314

[Close]

BLAST of CmoCh06G004440 vs. NCBI nr
Match: gi|449440199|ref|XP_004137872.1| (PREDICTED: ribosome production factor 2 homolog [Cucumis sativus])

HSP 1 Score: 576.6 bits (1485), Expect = 2.6e-161
Identity = 291/322 (90.37%), Postives = 313/322 (97.20%), Query Frame = 1


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           ML++RTPKN KVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTE+YHLKKESAVKY
Sbjct: 1   MLQIRTPKNRKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTELYHLKKESAVKY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVG 120
           SR+N+GIKPFE+GGD+SLEFFSLKTDCSII+YGSHSKKRP+NLVIARTY+ HIYD+VEVG
Sbjct: 61  SRKNDGIKPFESGGDASLEFFSLKTDCSIILYGSHSKKRPNNLVIARTYNQHIYDMVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180
           IENFKSMHSF YDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLD FRGEVVEN+NL
Sbjct: 121 IENFKSMHSFAYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDFFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           +GLDRVYVCTAISPNKVFLTHCALR+KKSGSVVPRMELVEVGPSMD+V+RRHRLP+DGLR
Sbjct: 181 SGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLPTDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKN 300
           KEAMKTAKD+AKKKEKNVS+D I GKIGRIYIPDQKVGD+A+ DKSKGVKRER EAKMKN
Sbjct: 241 KEAMKTAKDKAKKKEKNVSKDIIQGKIGRIYIPDQKVGDMAIVDKSKGVKRERREAKMKN 300

Query: 301 RDNGPASKKQKEDSEKPKEDSE 323
           RD+GPASKK KEDSEKPKEDSE
Sbjct: 301 RDDGPASKKPKEDSEKPKEDSE 322

[Close]

BLAST of CmoCh06G004440 vs. NCBI nr
Match: gi|659109743|ref|XP_008454852.1| (PREDICTED: LOW QUALITY PROTEIN: ribosome production factor 2 homolog [Cucumis melo])

HSP 1 Score: 561.6 bits (1446), Expect = 8.8e-157
Identity = 282/317 (88.96%), Postives = 307/317 (96.85%), Query Frame = 1


Query: 6   TPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKYSRRNE 65
           TPKN KVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTE+YHLKKESAVKYSR+N+
Sbjct: 11  TPKNRKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTELYHLKKESAVKYSRKND 70

Query: 66  GIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVGIENFK 125
           GIKPFE+GGD+SLEFFSLKTDCSII+YGSHSKKRP+NLVI RTY+ HIYD+VEVGIENFK
Sbjct: 71  GIKPFESGGDASLEFFSLKTDCSIILYGSHSKKRPNNLVIXRTYNQHIYDMVEVGIENFK 130

Query: 126 SMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINLAGLDR 185
           SMHSF YDKKL+PRVGSKPFITFIGEGFENVEELKHLKEVLLD+FRGEVVEN+NL+GLDR
Sbjct: 131 SMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNLSGLDR 190

Query: 186 VYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLRKEAMK 245
           VYVCTAISPNKVFLTHCALR+KKSGSVVPRMELVEVGPSMD+V+RRHRLP+DGLRKEAMK
Sbjct: 191 VYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLPTDGLRKEAMK 250

Query: 246 TAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKNRDNGP 305
           TAKD+AKKKEKNVS+D I GK+GRIYIPDQKVGD+A+ DKSKGVKRER EAKMKNRD+GP
Sbjct: 251 TAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERREAKMKNRDDGP 310

Query: 306 ASKKQKEDSEKPKEDSE 323
           ASKK KEDSEKP+E+ E
Sbjct: 311 ASKKPKEDSEKPEENLE 327

[Close]

BLAST of CmoCh06G004440 vs. NCBI nr
Match: gi|225440986|ref|XP_002283513.1| (PREDICTED: ribosome production factor 2 homolog [Vitis vinifera])

HSP 1 Score: 510.0 bits (1312), Expect = 3.0e-141
Identity = 250/315 (79.37%), Postives = 288/315 (91.43%), Query Frame = 1


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           MLK++TPK+GK KRE+EKRAPKLVE+GKKTLIL GTKTS VLN VLTEIYHLKK+SAV+Y
Sbjct: 1   MLKIKTPKSGKAKREIEKRAPKLVESGKKTLILQGTKTSNVLNAVLTEIYHLKKDSAVRY 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVG 120
           +R+NE I+PFE+GG++SLEFFSLKTDCSI V+GSHSKKRPDNLVI RTYDHHIYDLVEVG
Sbjct: 61  TRKNENIRPFESGGETSLEFFSLKTDCSIFVFGSHSKKRPDNLVIGRTYDHHIYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180
           +ENFKSM SFTYDKKLSP+VGSKPFI FIGEGFE+V+ELKHLKEVLLD+ RGEVVEN+NL
Sbjct: 121 VENFKSMESFTYDKKLSPKVGSKPFIAFIGEGFESVDELKHLKEVLLDLLRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AGLD  Y+CTA+S N+VF THCA+R+KKSG++VPRMELVEVGPSMDLVVRRHRLP+D +R
Sbjct: 181 AGLDHAYICTAVSSNRVFFTHCAMRLKKSGTIVPRMELVEVGPSMDLVVRRHRLPNDSVR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKN 300
           KEAMKTAK+Q KKK KNVSQD I GK+G+IY+PDQ+VG VALP K+KG+KRER EAKMK+
Sbjct: 241 KEAMKTAKEQPKKKVKNVSQDVIQGKVGKIYVPDQQVGSVALPYKAKGLKRERREAKMKH 300

Query: 301 RDNGPASKKQKEDSE 316
             N  A KKQKE+SE
Sbjct: 301 ETNDRAPKKQKENSE 315

[Close]

BLAST of CmoCh06G004440 vs. NCBI nr
Match: gi|823136865|ref|XP_012468205.1| (PREDICTED: ribosome production factor 2 homolog [Gossypium raimondii])

HSP 1 Score: 508.4 bits (1308), Expect = 8.9e-141
Identity = 254/315 (80.63%), Postives = 290/315 (92.06%), Query Frame = 1


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           M+K++TPK G+VKREL+KRAPKLVETGKKTLIL GTKTSG+LN VL+EIYHLKK  AV++
Sbjct: 1   MMKIKTPKKGRVKRELDKRAPKLVETGKKTLILQGTKTSGILNSVLSEIYHLKKGGAVRF 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVG 120
           +R+N+ I+PFE+GG++SLEFFSLKTDCSI VYGSHSKKRP+NLVI R YDHH+YDLVEVG
Sbjct: 61  TRKNDNIRPFESGGETSLEFFSLKTDCSIFVYGSHSKKRPNNLVIGRMYDHHVYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180
           +ENFKS+ SFTYDKK++PRVGSKPFI FIGEGFENV+ELKHLKEVLLD+ RGEVVENINL
Sbjct: 121 VENFKSIESFTYDKKIAPRVGSKPFIAFIGEGFENVDELKHLKEVLLDLLRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AGLDR YVCTAIS NKV+LTHCALR+KKSG+VVPRMELVEVGPSMDLVVRRHRLP++GLR
Sbjct: 181 AGLDRAYVCTAISSNKVYLTHCALRLKKSGTVVPRMELVEVGPSMDLVVRRHRLPNEGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKN 300
           KEAMKTAKDQ KKK KNVS DAI G IG+IYIPDQKVG++ALP+K+KGVKRER EAK K+
Sbjct: 241 KEAMKTAKDQPKKKVKNVSSDAIQGTIGKIYIPDQKVGEMALPNKAKGVKRERREAKNKD 300

Query: 301 RDNGPASKKQKEDSE 316
             N  ASKKQKE+SE
Sbjct: 301 A-NEHASKKQKEESE 314

[Close]

BLAST of CmoCh06G004440 vs. NCBI nr
Match: gi|728830151|gb|KHG09594.1| (hypothetical protein F383_11166 [Gossypium arboreum])

HSP 1 Score: 505.4 bits (1300), Expect = 7.5e-140
Identity = 252/315 (80.00%), Postives = 289/315 (91.75%), Query Frame = 1


Query: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60
           M+K++TPK G+VKREL+KRAPKLVETGKKTLIL GTKTSG LN VL+EIYHLKK  AV++
Sbjct: 1   MMKIKTPKKGRVKRELDKRAPKLVETGKKTLILQGTKTSGTLNSVLSEIYHLKKGGAVRF 60

Query: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLVEVG 120
           +R+N+ I+PFE+GG++SLEFFSLKTDCSI VYGSHSKKRP+NLV+ R YDHH+YDLVEVG
Sbjct: 61  TRKNDNIRPFESGGETSLEFFSLKTDCSIFVYGSHSKKRPNNLVLGRMYDHHVYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180
           +ENFKS+ SFTYDKK++PRVGSKPFI FIGEGFENV+ELKHLKEVLLD+ RGEVVENINL
Sbjct: 121 VENFKSIESFTYDKKIAPRVGSKPFIAFIGEGFENVDELKHLKEVLLDLLRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240
           AGLDR Y+CTAIS NKV+LTHCALR+KKSG+VVPRMELVEVGPSMDLVVRRHRLP++GLR
Sbjct: 181 AGLDRAYICTAISSNKVYLTHCALRLKKSGTVVPRMELVEVGPSMDLVVRRHRLPNEGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERCEAKMKN 300
           KEAMKTAKDQ KKK KNVS DAI G IG+IYIPDQKVG++ALP+K+KGVKRER EAK K 
Sbjct: 241 KEAMKTAKDQPKKKVKNVSSDAIQGTIGKIYIPDQKVGEMALPNKAKGVKRERREAKNK- 300

Query: 301 RDNGPASKKQKEDSE 316
           + N  ASKKQKE+SE
Sbjct: 301 QANEHASKKQKEESE 314

The following BLAST results are available for this feature:

BLAST of CmoCh06G004440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPF2_ARATH	3.9e-128	71.43	Ribosome production factor 2 homolog OS=Arabidopsis thaliana GN=At3g23620 PE=2 S...	[more]
RPF2_ORYSJ	2.7e-121	69.23	Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica GN=Os01g051...	[more]
RPF2_MOUSE	6.1e-57	43.09	Ribosome production factor 2 homolog OS=Mus musculus GN=Rpf2 PE=2 SV=2	[more]
RPF2_BOVIN	3.9e-56	42.12	Ribosome production factor 2 homolog OS=Bos taurus GN=RPF2 PE=2 SV=1	[more]
RPF2_HUMAN	2.6e-55	42.44	Ribosome production factor 2 homolog OS=Homo sapiens GN=RPF2 PE=1 SV=2	[more]

BLAST of CmoCh06G004440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAR1_CUCSA	1.8e-161	90.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G750370 PE=4 SV=1	[more]
D7TJ22_VITVI	2.1e-141	79.37	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g03890 PE=4 SV=...	[more]
A0A0D2RBX2_GOSRA	6.2e-141	80.63	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G242600 PE=4 SV=1	[more]
A0A0B0NCP2_GOSAR	5.2e-140	80.00	Uncharacterized protein OS=Gossypium arboreum GN=F383_11166 PE=4 SV=1	[more]
W9QQH6_9ROSA	8.9e-140	77.53	Uncharacterized protein OS=Morus notabilis GN=L484_013813 PE=4 SV=1	[more]

BLAST of CmoCh06G004440 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23620.1	2.2e-129	71.43	Ribosomal RNA processing Brix domain protein	[more]

BLAST of CmoCh06G004440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440199\|ref\|XP_004137872.1\|	2.6e-161	90.37	PREDICTED: ribosome production factor 2 homolog [Cucumis sativus]	[more]
gi\|659109743\|ref\|XP_008454852.1\|	8.8e-157	88.96	PREDICTED: LOW QUALITY PROTEIN: ribosome production factor 2 homolog [Cucumis me...	[more]
gi\|225440986\|ref\|XP_002283513.1\|	3.0e-141	79.37	PREDICTED: ribosome production factor 2 homolog [Vitis vinifera]	[more]
gi\|823136865\|ref\|XP_012468205.1\|	8.9e-141	80.63	PREDICTED: ribosome production factor 2 homolog [Gossypium raimondii]	[more]
gi\|728830151\|gb\|KHG09594.1\|	7.5e-140	80.00	hypothetical protein F383_11166 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007109	Brix

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001510	RNA methylation
biological_process	GO:0015977	carbon fixation
biological_process	GO:0006099	tricarboxylic acid cycle
biological_process	GO:0008150	biological_process
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008964	phosphoenolpyruvate carboxylase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G004440.1	CmoCh06G004440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 35..231 score: 1.6
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 31..232 score: 1.1
IPR007109	Brix domain	PROFILE	PS50833	BRIX	coord: 28..238 score: 23
None	No IPR available	PANTHER	PTHR12728	BRIX DOMAIN CONTAINING PROTEIN	coord: 1..303 score: 3.4E
None	No IPR available	PANTHER	PTHR12728:SF0	RIBOSOME PRODUCTION FACTOR 2 HOMOLOG	coord: 1..303 score: 3.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G004440	Cucsa.378550	Cucumber (Gy14) v1	cgycmoB1044
CmoCh06G004440	CmaCh14G002800	Cucurbita maxima (Rimu)	cmacmoB268
CmoCh06G004440	CmaCh06G004460	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G004440	Cla017728	Watermelon (97103) v1	cmowmB782
CmoCh06G004440	Csa3G750370	Cucumber (Chinese Long) v2	cmocuB807
CmoCh06G004440	ClCG10G019350	Watermelon (Charleston Gray)	cmowcgB729
CmoCh06G004440	CSPI03G34190	Wild cucumber (PI 183967)	cmocpiB815
CmoCh06G004440	Lsi03G019380	Bottle gourd (USVL1VR-Ls)	cmolsiB747
CmoCh06G004440	Cp4.1LG03g01080	Cucurbita pepo (Zucchini)	cmocpeB783
CmoCh06G004440	Cp4.1LG08g10320	Cucurbita pepo (Zucchini)	cmocpeB797
CmoCh06G004440	CsaV3_3G036840	Cucumber (Chinese Long) v3	cmocucB0954
CmoCh06G004440	Cla97C10G202450	Watermelon (97103) v2	cmowmbB818
CmoCh06G004440	Bhi11G001676	Wax gourd	cmowgoB0983
CmoCh06G004440	CsGy3G031970	Cucumber (Gy14) v2	cgybcmoB402
CmoCh06G004440	Carg00921	Silver-seed gourd	carcmoB0227
CmoCh06G004440	Carg03704	Silver-seed gourd	carcmoB0351

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G004440	CmoCh14G002680	Cucurbita moschata (Rifu)	cmocmoB222

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G004440	Watermelon (97103) v2	cmowmbB832
CmoCh06G004440	Wax gourd	cmowgoB1031
CmoCh06G004440	Cucurbita moschata (Rifu)	cmocmoB454
CmoCh06G004440	Cucurbita moschata (Rifu)	cmocmoB483
CmoCh06G004440	Cucumber (Gy14) v1	cgycmoB0149
CmoCh06G004440	Cucurbita maxima (Rimu)	cmacmoB665
CmoCh06G004440	Cucurbita maxima (Rimu)	cmacmoB874
CmoCh06G004440	Wild cucumber (PI 183967)	cmocpiB838
CmoCh06G004440	Cucumber (Chinese Long) v2	cmocuB828
CmoCh06G004440	Melon (DHL92) v3.5.1	cmomeB747
CmoCh06G004440	Melon (DHL92) v3.5.1	cmomeB763
CmoCh06G004440	Watermelon (Charleston Gray)	cmowcgB742
CmoCh06G004440	Watermelon (97103) v1	cmowmB797
CmoCh06G004440	Cucurbita pepo (Zucchini)	cmocpeB761
CmoCh06G004440	Cucurbita pepo (Zucchini)	cmocpeB782
CmoCh06G004440	Bottle gourd (USVL1VR-Ls)	cmolsiB740
CmoCh06G004440	Cucumber (Gy14) v2	cgybcmoB833
CmoCh06G004440	Melon (DHL92) v3.6.1	cmomedB849
CmoCh06G004440	Melon (DHL92) v3.6.1	cmomedB867
CmoCh06G004440	Silver-seed gourd	carcmoB0337
CmoCh06G004440	Silver-seed gourd	carcmoB1098
CmoCh06G004440	Silver-seed gourd	carcmoB1099
CmoCh06G004440	Cucumber (Chinese Long) v3	cmocucB0979