Carg03704 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03704
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ribosome production factor 2 homolog
Location	Cucurbita_argyrosperma_scaffold_006 : 1497179 .. 1499612 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAGACGCCCGCGCCATAAAACCCACCAAAATCGGCGTCAGTTTGCAGTCGCCGGAAGTGTCGATATTCTTCTGAGCATCAAAACCCTAAATCATCTCCGTCATCTCGTCGTTGTGGATCATGTTGAAGATTAGAACTCCCAAGAATGGAAAAGTTAGACGAGAGCTTGAGAAACGTGCCCCCAAAATTGTAAGTTCTTCCAGTCCTGTCTGTATATCTTCATGCTTCGGGAGATAGTTTGTACTGGACGATTAACAGCATGTCAAAGAAGTTTGTATAGGCTGTGAATTGTTATTTACTTCCCGTATTGATGGATTTGGTTATCGATTTGAATCGCAGGTTGAGACGGGGAAGAAGACGCTGATACTTCATGGCACAAAAACAAGCGGCGTGTTGAATGCAGTACTGACGGAACTCTATCACCTGAAGAAAGAAAGTTCCGTGAAGTATTCTCGTAAGAATGATGGAATTAAACCATTTGAAAGTGGCGGCGATTCGTCTTTGGAATTTTTCTCTCTCAAAACTGATTGCAGTATTATCGTGGTGCGTACACTTGTGAATGCTTAATATTCCATGCGTCGGTTATTTACTTGGCTTAATTTCTTGGAGCTCAGCAGCAAGTAACGTACTTTTTTGAGTTTTGTATGTGCTTTTACAATTCAGTTTTCCCATCCGGAGGCAATTTCTGTACTCTTCATCACAGAGACTTTGATATAAAATTAATTCTAGCCGTTTAGTGATTCGTTTAAGGTTTGATTCTTTTGGATGAGTACTTCTCGTTTTCCCTAAATGGTTTTTGATCGAAGAACTTAGCAGTCCTCAAACAGATGAACCTATGTAGAAAAATATAGTCACGATGTGCATTTTTGTTGGGGTAAGGTGAGCCGCCAAGAATTTAGAGAACTTCAATTTAGGAGGCACCCTATTTTGAGGGAAACCTCCGTCTTATTGTGTTCAAGTTTTGTATCTCTTTTCCTCTGTTATTATAAAACAGTAAACAGCTTCGTGCTTTTATGTCTCCAGTTATTTATTGTTGTATTTGTTGCACCTCTTTTGCAGTATGGTTCTCACTCAAAGAAACGACCTGATAACCTTGTCATAGGGAGAACCTATGATCACAAAATCTATGACCTAGTTGAGGTTGGGATTGAAAATTTCAAGTCAATGCATTCTTTCACATATGATAAGAAACTCTCGCCACGGGTGGGGTCAAAGCCTTTCATTACTTTCATTGGGGAAGGATTTGAGAATGTGGAAGAGCTAAAGCATTTAAAGGAAGTTTTGCTTGATTTATTCCGGGGGGAGGTAAAAACCCTGCAGCTTTAGCTGACTTGAGTTTGAATGTTTAGATATAAAAGATATCTATTGTCTTTGCAGGTTGTAGAGAATTTAAATCTTGCAGGGTTGGACCGTGTGTATGTATGTACAGCCATCTCACCGAATAAAGTATTTCTCACTCATTGTGCATTGCGATTGAAGAAGTCAGGTTCAGTAGTTCCAAGAATGGAACTAGTTGAAGTTGGTCCTTCCATGGATATGGTGGTTCGCCGCCACCGACTTCCTAGTGATGGTCTAAGGAAGGAAGCCATGAAAACAGCCAAGGATCAGGCTAAGAAGAAGGTTTAATGGCTATCTTTTAAATGCATGCATTTCATTTTTTCTATTTAGCCGTTTGTCTAATTTTGATGTTTACTTCTTCCAGGAGAAGAATGTTAGCCAGGATGCAATTCAGGGCAAGATCGGAAGGATCTATATTCCTGATCAAAAGGTGTGCACATCTCTGTCTGTATATGTCTTTTCTTGTTAAAGGGCTTGCTACTGTCACAATGCATGCATATCCTCTAGATTGGAAGTGGTTCATGTAATTGAACTCTTCTCTTGTCATGTTAGGTTCATGATATGAATTCTCATATCATGTTTATCACCAAAGTAGGTACTTCATTATGTCATCCGGTACAAATTTGCAAGTCATTTGAATAAACTTGATTTTCAACATTGACTCATAGGTTGGAGATATGGCTATGCCCGACAAATCAAAGGGAGTGAAGAGAGAACGACGTGAAGCGAAAATGAAAAATAAAGATGACGGACCAGCCTCTAAAAAACCAAAGGAAGATTCAGAAAAGCCGAAGGAAAATTCGGAATAGTTCAATATTAGTGGAATAGTTTTGATCCGATTCTCCTCTTGCTAACTTGAGTCAGCTGTTGTGAGTTGCATGGTAGCACGCCAAATATATGGAGAGAGCAGACAAATTATTTATTGCTTATATACAATTTTGTTTTTGTTCTTCAATCTGATTCTTACATGCTGAGCCTATCTTTTATCATCTTAATCATTCAAGCTCTTTCAAAGTTTGATCGTGAACCTCATTGATTCTGTTGTTGTGTAGCAAACAGAAGTTCTTTCAAAGTATGTATATGTTAGCAAGATGA

mRNA sequence

TAAAGACGCCCGCGCCATAAAACCCACCAAAATCGGCGTCAGTTTGCAGTCGCCGGAAGTGTCGATATTCTTCTGAGCATCAAAACCCTAAATCATCTCCGTCATCTCGTCGTTGTGGATCATGTTGAAGATTAGAACTCCCAAGAATGGAAAAGTTAGACGAGAGCTTGAGAAACGTGCCCCCAAAATTGTTGAGACGGGGAAGAAGACGCTGATACTTCATGGCACAAAAACAAGCGGCGTGTTGAATGCAGTACTGACGGAACTCTATCACCTGAAGAAAGAAAGTTCCGTGAAGTATTCTCGTAAGAATGATGGAATTAAACCATTTGAAAGTGGCGGCGATTCGTCTTTGGAATTTTTCTCTCTCAAAACTGATTGCAGTATTATCGTGTATGGTTCTCACTCAAAGAAACGACCTGATAACCTTGTCATAGGGAGAACCTATGATCACAAAATCTATGACCTAGTTGAGGTTGGGATTGAAAATTTCAAGTCAATGCATTCTTTCACATATGATAAGAAACTCTCGCCACGGGTGGGGTCAAAGCCTTTCATTACTTTCATTGGGGAAGGATTTGAGAATGTGGAAGAGCTAAAGCATTTAAAGGAAGTTTTGCTTGATTTATTCCGGGGGGAGGTTGTAGAGAATTTAAATCTTGCAGGGTTGGACCGTGTGTATGTATGTACAGCCATCTCACCGAATAAAGTATTTCTCACTCATTGTGCATTGCGATTGAAGAAGTCAGGTTCAGTAGTTCCAAGAATGGAACTAGTTGAAGTTGGTCCTTCCATGGATATGGTGGTTCGCCGCCACCGACTTCCTAGTGATGGTCTAAGGAAGGAAGCCATGAAAACAGCCAAGGATCAGGCTAAGAAGAAGGAGAAGAATGTTAGCCAGGATGCAATTCAGGGCAAGATCGGAAGGATCTATATTCCTGATCAAAAGGTTGGAGATATGGCTATGCCCGACAAATCAAAGGGAGTGAAGAGAGAACGACGTGAAGCGAAAATGAAAAATAAAGATGACGGACCAGCCTCTAAAAAACCAAAGGAAGATTCAGAAAAGCCGAAGGAAAATTCGGAATAGTTCAATATTAGTGGAATAGTTTTGATCCGATTCTCCTCTTGCTAACTTGAGTCAGCTGTTGTGAGTTGCATGGTAGCACGCCAAATATATGGAGAGAGCAGACAAATTATTTATTGCTTATATACAATTTTGTTTTTGTTCTTCAATCTGATTCTTACATGCTGAGCCTATCTTTTATCATCTTAATCATTCAAGCTCTTTCAAAGTTTGATCGTGAACCTCATTGATTCTGTTGTTGTGTAGCAAACAGAAGTTCTTTCAAAGTATGTATATGTTAGCAAGATGA

Coding sequence (CDS)

ATGTTGAAGATTAGAACTCCCAAGAATGGAAAAGTTAGACGAGAGCTTGAGAAACGTGCCCCCAAAATTGTTGAGACGGGGAAGAAGACGCTGATACTTCATGGCACAAAAACAAGCGGCGTGTTGAATGCAGTACTGACGGAACTCTATCACCTGAAGAAAGAAAGTTCCGTGAAGTATTCTCGTAAGAATGATGGAATTAAACCATTTGAAAGTGGCGGCGATTCGTCTTTGGAATTTTTCTCTCTCAAAACTGATTGCAGTATTATCGTGTATGGTTCTCACTCAAAGAAACGACCTGATAACCTTGTCATAGGGAGAACCTATGATCACAAAATCTATGACCTAGTTGAGGTTGGGATTGAAAATTTCAAGTCAATGCATTCTTTCACATATGATAAGAAACTCTCGCCACGGGTGGGGTCAAAGCCTTTCATTACTTTCATTGGGGAAGGATTTGAGAATGTGGAAGAGCTAAAGCATTTAAAGGAAGTTTTGCTTGATTTATTCCGGGGGGAGGTTGTAGAGAATTTAAATCTTGCAGGGTTGGACCGTGTGTATGTATGTACAGCCATCTCACCGAATAAAGTATTTCTCACTCATTGTGCATTGCGATTGAAGAAGTCAGGTTCAGTAGTTCCAAGAATGGAACTAGTTGAAGTTGGTCCTTCCATGGATATGGTGGTTCGCCGCCACCGACTTCCTAGTGATGGTCTAAGGAAGGAAGCCATGAAAACAGCCAAGGATCAGGCTAAGAAGAAGGAGAAGAATGTTAGCCAGGATGCAATTCAGGGCAAGATCGGAAGGATCTATATTCCTGATCAAAAGGTTGGAGATATGGCTATGCCCGACAAATCAAAGGGAGTGAAGAGAGAACGACGTGAAGCGAAAATGAAAAATAAAGATGACGGACCAGCCTCTAAAAAACCAAAGGAAGATTCAGAAAAGCCGAAGGAAAATTCGGAATAG

Protein sequence

MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKYSRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVGIENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNLAGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLRKEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERREAKMKNKDDGPASKKPKEDSEKPKENSE

Homology

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BLAST of Carg03704 vs. NCBI nr
Match: XP_023005644.1 (ribosome production factor 2 homolog [Cucurbita maxima])

HSP 1 Score: 558.1 bits (1437), Expect = 1.9e-155
Identity = 276/295 (93.56%), Postives = 291/295 (98.64%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           MLK+RTPKNGKV+RELEKRAPK+VETGKKTLILHGTKTSGVLN VLTE+YHLKKES+VKY
Sbjct: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SR+N+GIKPFE+GGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVI RTYDH IYDL+EVG
Sbjct: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLD+FRGEVVEN+NL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALR+KKSGSVVPRMELVEVGPSMD+VVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERRE 296
           KEAMKTAKDQAKKKEKNVSQDAI GKIGRIYIPDQKVGD+A+PDKSKGVKRERRE
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERRE 295

[Close]

BLAST of Carg03704 vs. NCBI nr
Match: XP_023540188.1 (ribosome production factor 2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 558.1 bits (1437), Expect = 1.9e-155
Identity = 276/295 (93.56%), Postives = 291/295 (98.64%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           MLK+RTPKNGKV+RELEKRAPK+VETGKKTLILHGTKTSGVLN VLTE+YHLKKES+VKY
Sbjct: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTEIYHLKKESAVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SR+N+GIKPFE+GGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVI RTYDH IYDL+EVG
Sbjct: 61  SRRNEGIKPFENGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIARTYDHHIYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLD+FRGEVVEN+NL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDMFRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALR+KKSGSVVPRMELVEVGPSMD+VVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRMKKSGSVVPRMELVEVGPSMDLVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERRE 296
           KEAMKTAKDQAKKKEKNVSQDAI GKIGRIYIPDQKVGD+A+PDKSKGVKRERRE
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIHGKIGRIYIPDQKVGDVALPDKSKGVKRERRE 295

[Close]

BLAST of Carg03704 vs. NCBI nr
Match: XP_022144774.1 (ribosome production factor 2 homolog [Momordica charantia] >XP_022144775.1 ribosome production factor 2 homolog [Momordica charantia])

HSP 1 Score: 551.6 bits (1420), Expect = 1.8e-153
Identity = 274/295 (92.88%), Postives = 290/295 (98.31%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           MLK+RTPKNGKV+RELEKRAPK+VETGKKTLILHGTKTS VLNAVLTE+YHLKKES+VKY
Sbjct: 1   MLKVRTPKNGKVKRELEKRAPKLVETGKKTLILHGTKTSSVLNAVLTEIYHLKKESAVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SRKNDGIKPFESGGD+SLEFFSLKTDCS+IVYGSHSKKRPDNLVIGRTYDH IYDL+EVG
Sbjct: 61  SRKNDGIKPFESGGDASLEFFSLKTDCSLIVYGSHSKKRPDNLVIGRTYDHHIYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSF YDKKL+P+VGSKPFITFIGEGFE+VEELKHLKEVLLDLFRGEVVENLNL
Sbjct: 121 IENFKSMHSFAYDKKLAPKVGSKPFITFIGEGFESVEELKHLKEVLLDLFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALRLKKSG++VPRMELVEVGPSMDMVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGTLVPRMELVEVGPSMDMVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERRE 296
           KEAMKTAKDQAKKKEKNVS DAIQGKIGRIYIPDQKVG+MA+P+KSKGVK ERRE
Sbjct: 241 KEAMKTAKDQAKKKEKNVSVDAIQGKIGRIYIPDQKVGEMAIPNKSKGVKXERRE 295

[Close]

BLAST of Carg03704 vs. NCBI nr
Match: XP_022934916.1 (ribosome production factor 2 homolog [Cucurbita moschata] >XP_023527626.1 ribosome production factor 2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 544.3 bits (1401), Expect = 2.8e-151
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY
Sbjct: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG
Sbjct: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQK 277
           KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQK
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQK 276

[Close]

BLAST of Carg03704 vs. NCBI nr
Match: XP_022983029.1 (ribosome production factor 2 homolog [Cucurbita maxima])

HSP 1 Score: 543.5 bits (1399), Expect = 4.8e-151
Identity = 274/276 (99.28%), Postives = 276/276 (100.00%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           MLK+RTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY
Sbjct: 1   MLKVRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDL+EVG
Sbjct: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL
Sbjct: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR
Sbjct: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQK 277
           KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQK
Sbjct: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQK 276

[Close]

BLAST of Carg03704 vs. TAIR10
Match: AT3G23620.1 (Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 458.4 bits (1178), Expect = 3.7e-129
Identity = 218/295 (73.90%), Postives = 262/295 (88.81%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           M++IRTPK GK +R LE RAPK+VETGKKTLILHGTKTS  L++V+TELY LKK  +++Y
Sbjct: 1   MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SR+N+ I+PFESGG++SLEFFS KTDCSI VYGSH+KKRPDNLV+GR YDH++YDL+EVG
Sbjct: 61  SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKS+ +F+YDKK +P  G+KPFI FIGEGFENV ELKHLKEVL DLFRGEVV+NLNL
Sbjct: 121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
            GLDR YVC+AISP KVFLTHCAL+LKKSGS+VPRMELVEVGPSMD+V+RR+RLP+D L 
Sbjct: 181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERRE 296
           KEAM+T+KD+ KKKEKNV QDA+ GK G+IY+PDQK+ +M + DKSKG KRER++
Sbjct: 241 KEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKD 295

[Close]

BLAST of Carg03704 vs. Swiss-Prot
Match: sp|Q9LUG5|RPF2_ARATH (Ribosome production factor 2 homolog OS=Arabidopsis thaliana OX=3702 GN=At3g23620 PE=2 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 6.7e-128
Identity = 218/295 (73.90%), Postives = 262/295 (88.81%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           M++IRTPK GK +R LE RAPK+VETGKKTLILHGTKTS  L++V+TELY LKK  +++Y
Sbjct: 1   MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SR+N+ I+PFESGG++SLEFFS KTDCSI VYGSH+KKRPDNLV+GR YDH++YDL+EVG
Sbjct: 61  SRRNENIRPFESGGETSLEFFSQKTDCSIFVYGSHTKKRPDNLVLGRMYDHQVYDLIEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKS+ +F+YDKK +P  G+KPFI FIGEGFENV ELKHLKEVL DLFRGEVV+NLNL
Sbjct: 121 IENFKSLRAFSYDKKFAPHEGTKPFICFIGEGFENVSELKHLKEVLTDLFRGEVVDNLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
            GLDR YVC+AISP KVFLTHCAL+LKKSGS+VPRMELVEVGPSMD+V+RR+RLP+D L 
Sbjct: 181 TGLDRAYVCSAISPTKVFLTHCALKLKKSGSIVPRMELVEVGPSMDLVIRRNRLPNDSLM 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERRE 296
           KEAM+T+KD+ KKKEKNV QDA+ GK G+IY+PDQK+ +M + DKSKG KRER++
Sbjct: 241 KEAMRTSKDKPKKKEKNVDQDAVLGKTGKIYMPDQKLKEMKLFDKSKGSKRERKD 295

[Close]

BLAST of Carg03704 vs. Swiss-Prot
Match: sp|Q9AWM9|RPF2_ORYSJ (Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0513800 PE=2 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 4.6e-121
Identity = 209/292 (71.58%), Postives = 260/292 (89.04%), Query Frame = 0


Query: 4   IRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKYSRK 63
           IR P++ + +REL K APK+VETGKKTLILHGTKTS VLN+VL +L+HLK++++VKYS+K
Sbjct: 5   IRVPRSQRAKRELLKHAPKLVETGKKTLILHGTKTSAVLNSVLADLFHLKRDNAVKYSKK 64

Query: 64  NDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVGIEN 123
           ND I+PFESGG++SLEFFSLKTDCS+IVYGSHSKKRP+NLV+GRTYDH IYDLVEVG+EN
Sbjct: 65  NDNIRPFESGGETSLEFFSLKTDCSLIVYGSHSKKRPNNLVLGRTYDHHIYDLVEVGVEN 124

Query: 124 FKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNLAGL 183
           +KS+ S+ YDKKL+P++GSKPF  FIGE FE+VEELKHLKEVLLDLF+GEVVENLNLAG+
Sbjct: 125 YKSIESYVYDKKLAPKLGSKPFFAFIGEHFESVEELKHLKEVLLDLFKGEVVENLNLAGV 184

Query: 184 DRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLRKEA 243
           DRV+VCTAISP  V++ HCALRLK+SG+ +PR+ELVEVGPSMD+VVRRHR P + L+KEA
Sbjct: 185 DRVFVCTAISPTTVYMMHCALRLKRSGTSIPRIELVEVGPSMDLVVRRHRYPVESLKKEA 244

Query: 244 MKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERRE 296
           MKTA D AKK  KNV++D + GK+G++YIPDQ++  M++ +  KG+KRERRE
Sbjct: 245 MKTA-DHAKKM-KNVTKDPVHGKLGKVYIPDQQIAKMSLSNDVKGLKRERRE 294

[Close]

BLAST of Carg03704 vs. Swiss-Prot
Match: sp|Q9JJ80|RPF2_MOUSE (Ribosome production factor 2 homolog OS=Mus musculus OX=10090 GN=Rpf2 PE=2 SV=2)

HSP 1 Score: 211.5 bits (537), Expect = 1.4e-53
Identity = 118/259 (45.56%), Postives = 164/259 (63.32%), Query Frame = 0


Query: 3   KIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKYSR 62
           K+  PK  + +R LEKR PK+ E  K  +++ G   +  +  VL ++Y LKK   V Y +
Sbjct: 6   KVLKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKK 65

Query: 63  KNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVGIE 122
           KN   +PFE    +SLEFFS K+DCS+ ++GSH+KKRP+NLVIGR YD+ + D++E+GIE
Sbjct: 66  KNI-TRPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 125

Query: 123 NFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNLAG 182
            F S+      K   P  G+KP + F G+ F+  E+ + LK +L+D FRG  V N+ LAG
Sbjct: 126 KFVSLKDIKTSK--CPE-GTKPMLIFAGDDFDVTEDFRRLKNLLIDFFRGPTVSNVRLAG 185

Query: 183 LDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLRKE 242
           L+ V   TA++  KV+     L LKKSG   PR+EL E+GPS+D+V+RR  L SD L K 
Sbjct: 186 LEYVLHFTALN-GKVYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVMRRTHLASDDLYKL 245

Query: 243 AMKTAKDQAKKKEKNVSQD 262
           +MK  K    KK KN+SQD
Sbjct: 246 SMKVPKALKPKKRKNISQD 257

[Close]

BLAST of Carg03704 vs. Swiss-Prot
Match: sp|Q9H7B2|RPF2_HUMAN (Ribosome production factor 2 homolog OS=Homo sapiens OX=9606 GN=RPF2 PE=1 SV=2)

HSP 1 Score: 208.4 bits (529), Expect = 1.2e-52
Identity = 116/259 (44.79%), Postives = 165/259 (63.71%), Query Frame = 0


Query: 3   KIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKYSR 62
           ++  PK  + +R LEKR PK+ E  K  +++ G   +  +  VL ++Y LKK   V Y +
Sbjct: 6   RVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKK 65

Query: 63  KNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVGIE 122
           KN   +PFE    +SLEFFS K+DCS+ ++GSH+KKRP+NLVIGR YD+ + D++E+GIE
Sbjct: 66  KNI-TRPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDMIELGIE 125

Query: 123 NFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNLAG 182
           NF S+      K   P  G+KP + F G+ F+  E+ + LK +L+D FRG  V N+ LAG
Sbjct: 126 NFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 185

Query: 183 LDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLRKE 242
           L+ V   TA++  K++     L LKKSG   PR+EL E+GPS+D+V+RR  L SD L K 
Sbjct: 186 LEYVLHFTALN-GKIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 245

Query: 243 AMKTAKDQAKKKEKNVSQD 262
           +MK  K    KK+KN+S D
Sbjct: 246 SMKMPKALKPKKKKNISHD 257

[Close]

BLAST of Carg03704 vs. Swiss-Prot
Match: sp|Q2YDN6|RPF2_BOVIN (Ribosome production factor 2 homolog OS=Bos taurus OX=9913 GN=RPF2 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 6.0e-52
Identity = 114/259 (44.02%), Postives = 164/259 (63.32%), Query Frame = 0


Query: 3   KIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKYSR 62
           ++  PK  + +R LEKR PK+ E  K  +++ G   +  +  VL ++Y LKK   + Y +
Sbjct: 6   RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKK 65

Query: 63  KNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVGIE 122
           KN   +PFE    +SLEFFS K+DCS+ ++GSH+KKRP+NLVIGR YD+ + D++E+GIE
Sbjct: 66  KNI-TRPFED--QTSLEFFSKKSDCSLFMFGSHNKKRPNNLVIGRMYDYHVLDIIELGIE 125

Query: 123 NFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNLAG 182
            F S+      K   P  G+KP + F G+ F+  E+ + LK +L+D FRG  V N+ LAG
Sbjct: 126 KFVSLKDIKNSK--CPE-GTKPMLIFAGDDFDVTEDYRRLKSLLIDFFRGPTVSNIRLAG 185

Query: 183 LDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLRKE 242
           L+ V   TA++  K++     L LKKSG   PR+EL E+GPS+D+V+RR  L SD L K 
Sbjct: 186 LEYVLHFTALN-GKIYFRSYKLLLKKSGCRTPRIELEEMGPSLDLVLRRTHLASDDLYKL 245

Query: 243 AMKTAKDQAKKKEKNVSQD 262
           +MK  K    KK+KN+S D
Sbjct: 246 SMKMPKALKPKKKKNISHD 257

[Close]

BLAST of Carg03704 vs. TrEMBL
Match: tr|A0A0A0LAR1|A0A0A0LAR1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G750370 PE=4 SV=1)

HSP 1 Score: 540.8 bits (1392), Expect = 2.1e-150
Identity = 271/295 (91.86%), Postives = 286/295 (96.95%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           ML+IRTPKN KV+RELEKRAPK+VETGKKTLILHGTKTSGVLN VLTELYHLKKES+VKY
Sbjct: 1   MLQIRTPKNRKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTELYHLKKESAVKY 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           SRKNDGIKPFESGGD+SLEFFSLKTDCSII+YGSHSKKRP+NLVI RTY+  IYD+VEVG
Sbjct: 61  SRKNDGIKPFESGGDASLEFFSLKTDCSIILYGSHSKKRPNNLVIARTYNQHIYDMVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           IENFKSMHSF YDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLD FRGEVVENLNL
Sbjct: 121 IENFKSMHSFAYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDFFRGEVVENLNL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           +GLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMV+RRHRLP+DGLR
Sbjct: 181 SGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLPTDGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERRE 296
           KEAMKTAKD+AKKKEKNVS+D IQGKIGRIYIPDQKVGDMA+ DKSKGVKRERRE
Sbjct: 241 KEAMKTAKDKAKKKEKNVSKDIIQGKIGRIYIPDQKVGDMAIVDKSKGVKRERRE 295

[Close]

BLAST of Carg03704 vs. TrEMBL
Match: tr|A0A1S3C0A3|A0A1S3C0A3_CUCME (LOW QUALITY PROTEIN: ribosome production factor 2 homolog OS=Cucumis melo OX=3656 GN=LOC103495160 PE=4 SV=1)

HSP 1 Score: 533.5 bits (1373), Expect = 3.3e-148
Identity = 266/290 (91.72%), Postives = 282/290 (97.24%), Query Frame = 0


Query: 6   TPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKYSRKND 65
           TPKN KV+RELEKRAPK+VETGKKTLILHGTKTSGVLN VLTELYHLKKES+VKYSRKND
Sbjct: 11  TPKNRKVKRELEKRAPKLVETGKKTLILHGTKTSGVLNEVLTELYHLKKESAVKYSRKND 70

Query: 66  GIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVGIENFK 125
           GIKPFESGGD+SLEFFSLKTDCSII+YGSHSKKRP+NLVI RTY+  IYD+VEVGIENFK
Sbjct: 71  GIKPFESGGDASLEFFSLKTDCSIILYGSHSKKRPNNLVIXRTYNQHIYDMVEVGIENFK 130

Query: 126 SMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNLAGLDR 185
           SMHSF YDKKL+PRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL+GLDR
Sbjct: 131 SMHSFAYDKKLAPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNLSGLDR 190

Query: 186 VYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLRKEAMK 245
           VYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMV+RRHRLP+DGLRKEAMK
Sbjct: 191 VYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVIRRHRLPTDGLRKEAMK 250

Query: 246 TAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERRE 296
           TAKD+AKKKEKNVS+D IQGK+GRIYIPDQKVGDMA+ DKSKGVKRERRE
Sbjct: 251 TAKDKAKKKEKNVSKDIIQGKVGRIYIPDQKVGDMAIVDKSKGVKRERRE 300

[Close]

BLAST of Carg03704 vs. TrEMBL
Match: tr|A0A0D2RBX2|A0A0D2RBX2_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G242600 PE=4 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 8.2e-139
Identity = 243/295 (82.37%), Postives = 278/295 (94.24%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           M+KI+TPK G+V+REL+KRAPK+VETGKKTLIL GTKTSG+LN+VL+E+YHLKK  +V++
Sbjct: 1   MMKIKTPKKGRVKRELDKRAPKLVETGKKTLILQGTKTSGILNSVLSEIYHLKKGGAVRF 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           +RKND I+PFESGG++SLEFFSLKTDCSI VYGSHSKKRP+NLVIGR YDH +YDLVEVG
Sbjct: 61  TRKNDNIRPFESGGETSLEFFSLKTDCSIFVYGSHSKKRPNNLVIGRMYDHHVYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           +ENFKS+ SFTYDKK++PRVGSKPFI FIGEGFENV+ELKHLKEVLLDL RGEVVEN+NL
Sbjct: 121 VENFKSIESFTYDKKIAPRVGSKPFIAFIGEGFENVDELKHLKEVLLDLLRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDR YVCTAIS NKV+LTHCALRLKKSG+VVPRMELVEVGPSMD+VVRRHRLP++GLR
Sbjct: 181 AGLDRAYVCTAISSNKVYLTHCALRLKKSGTVVPRMELVEVGPSMDLVVRRHRLPNEGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERRE 296
           KEAMKTAKDQ KKK KNVS DAIQG IG+IYIPDQKVG+MA+P+K+KGVKRERRE
Sbjct: 241 KEAMKTAKDQPKKKVKNVSSDAIQGTIGKIYIPDQKVGEMALPNKAKGVKRERRE 295

[Close]

BLAST of Carg03704 vs. TrEMBL
Match: tr|A0A0B0NCP2|A0A0B0NCP2_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_11166 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 4.1e-138
Identity = 241/295 (81.69%), Postives = 277/295 (93.90%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           M+KI+TPK G+V+REL+KRAPK+VETGKKTLIL GTKTSG LN+VL+E+YHLKK  +V++
Sbjct: 1   MMKIKTPKKGRVKRELDKRAPKLVETGKKTLILQGTKTSGTLNSVLSEIYHLKKGGAVRF 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           +RKND I+PFESGG++SLEFFSLKTDCSI VYGSHSKKRP+NLV+GR YDH +YDLVEVG
Sbjct: 61  TRKNDNIRPFESGGETSLEFFSLKTDCSIFVYGSHSKKRPNNLVLGRMYDHHVYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           +ENFKS+ SFTYDKK++PRVGSKPFI FIGEGFENV+ELKHLKEVLLDL RGEVVEN+NL
Sbjct: 121 VENFKSIESFTYDKKIAPRVGSKPFIAFIGEGFENVDELKHLKEVLLDLLRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDR Y+CTAIS NKV+LTHCALRLKKSG+VVPRMELVEVGPSMD+VVRRHRLP++GLR
Sbjct: 181 AGLDRAYICTAISSNKVYLTHCALRLKKSGTVVPRMELVEVGPSMDLVVRRHRLPNEGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERRE 296
           KEAMKTAKDQ KKK KNVS DAIQG IG+IYIPDQKVG+MA+P+K+KGVKRERRE
Sbjct: 241 KEAMKTAKDQPKKKVKNVSSDAIQGTIGKIYIPDQKVGEMALPNKAKGVKRERRE 295

[Close]

BLAST of Carg03704 vs. TrEMBL
Match: tr|A0A1U8MWP2|A0A1U8MWP2_GOSHI (ribosome production factor 2 homolog OS=Gossypium hirsutum OX=3635 GN=LOC107942119 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 4.1e-138
Identity = 241/295 (81.69%), Postives = 277/295 (93.90%), Query Frame = 0


Query: 1   MLKIRTPKNGKVRRELEKRAPKIVETGKKTLILHGTKTSGVLNAVLTELYHLKKESSVKY 60
           M+KI+TPK G+V+REL+KRAPK+VETGKKTLIL GTKTSG LN+VL+E+YHLKK  +V++
Sbjct: 1   MMKIKTPKKGRVKRELDKRAPKLVETGKKTLILQGTKTSGTLNSVLSEIYHLKKGGAVRF 60

Query: 61  SRKNDGIKPFESGGDSSLEFFSLKTDCSIIVYGSHSKKRPDNLVIGRTYDHKIYDLVEVG 120
           +RKND I+PFESGG++SLEFFSLKTDCSI VYGSHSKKRP+NLV+GR YDH +YDLVEVG
Sbjct: 61  TRKNDNIRPFESGGETSLEFFSLKTDCSIFVYGSHSKKRPNNLVLGRMYDHHVYDLVEVG 120

Query: 121 IENFKSMHSFTYDKKLSPRVGSKPFITFIGEGFENVEELKHLKEVLLDLFRGEVVENLNL 180
           +ENFKS+ SFTYDKK++PRVGSKPFI FIGEGFENV+ELKHLKEVLLDL RGEVVEN+NL
Sbjct: 121 VENFKSIESFTYDKKIAPRVGSKPFIAFIGEGFENVDELKHLKEVLLDLLRGEVVENINL 180

Query: 181 AGLDRVYVCTAISPNKVFLTHCALRLKKSGSVVPRMELVEVGPSMDMVVRRHRLPSDGLR 240
           AGLDR Y+CTAIS NKV+LTHCALRLKKSG+VVPRMELVEVGPSMD+VVRRHRLP++GLR
Sbjct: 181 AGLDRAYICTAISSNKVYLTHCALRLKKSGTVVPRMELVEVGPSMDLVVRRHRLPNEGLR 240

Query: 241 KEAMKTAKDQAKKKEKNVSQDAIQGKIGRIYIPDQKVGDMAMPDKSKGVKRERRE 296
           KEAMKTAKDQ KKK KNVS DAIQG IG+IYIPDQKVG+MA+P+K+KGVKRERRE
Sbjct: 241 KEAMKTAKDQPKKKVKNVSSDAIQGTIGKIYIPDQKVGEMALPNKAKGVKRERRE 295

The following BLAST results are available for this feature:

BLAST of Carg03704 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005644.1	1.9e-155	93.56	ribosome production factor 2 homolog [Cucurbita maxima]	[more]
XP_023540188.1	1.9e-155	93.56	ribosome production factor 2 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022144774.1	1.8e-153	92.88	ribosome production factor 2 homolog [Momordica charantia] >XP_022144775.1 ribos...	[more]
XP_022934916.1	2.8e-151	100.00	ribosome production factor 2 homolog [Cucurbita moschata] >XP_023527626.1 riboso...	[more]
XP_022983029.1	4.8e-151	99.28	ribosome production factor 2 homolog [Cucurbita maxima]	[more]

BLAST of Carg03704 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23620.1	3.7e-129	73.90	Ribosomal RNA processing Brix domain protein	[more]

BLAST of Carg03704 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LUG5\|RPF2_ARATH	6.7e-128	73.90	Ribosome production factor 2 homolog OS=Arabidopsis thaliana OX=3702 GN=At3g2362...	[more]
sp\|Q9AWM9\|RPF2_ORYSJ	4.6e-121	71.58	Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
sp\|Q9JJ80\|RPF2_MOUSE	1.4e-53	45.56	Ribosome production factor 2 homolog OS=Mus musculus OX=10090 GN=Rpf2 PE=2 SV=2	[more]
sp\|Q9H7B2\|RPF2_HUMAN	1.2e-52	44.79	Ribosome production factor 2 homolog OS=Homo sapiens OX=9606 GN=RPF2 PE=1 SV=2	[more]
sp\|Q2YDN6\|RPF2_BOVIN	6.0e-52	44.02	Ribosome production factor 2 homolog OS=Bos taurus OX=9913 GN=RPF2 PE=2 SV=1	[more]

BLAST of Carg03704 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAR1\|A0A0A0LAR1_CUCSA	2.1e-150	91.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G750370 PE=4 SV=1	[more]
tr\|A0A1S3C0A3\|A0A1S3C0A3_CUCME	3.3e-148	91.72	LOW QUALITY PROTEIN: ribosome production factor 2 homolog OS=Cucumis melo OX=365...	[more]
tr\|A0A0D2RBX2\|A0A0D2RBX2_GOSRA	8.2e-139	82.37	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G242600 PE=4 ...	[more]
tr\|A0A0B0NCP2\|A0A0B0NCP2_GOSAR	4.1e-138	81.69	Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_11166 PE=4 SV=1	[more]
tr\|A0A1U8MWP2\|A0A1U8MWP2_GOSHI	4.1e-138	81.69	ribosome production factor 2 homolog OS=Gossypium hirsutum OX=3635 GN=LOC1079421...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007109	Brix

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03704-RA	Carg03704-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 31..232 e-value: 1.6E-36 score: 137.3
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 35..231 e-value: 4.5E-31 score: 108.4
IPR007109	Brix domain	PROSITE	PS50833	BRIX	coord: 28..238 score: 23.343
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 274..322
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..322
None	No IPR available	PANTHER	PTHR12728	BRIX DOMAIN CONTAINING PROTEIN	coord: 1..306

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03704	Cla017728	Watermelon (97103) v1	carwmB0237
Carg03704	Csa3G750370	Cucumber (Chinese Long) v2	carcuB0277
Carg03704	ClCG10G019350	Watermelon (Charleston Gray)	carwcgB0240
Carg03704	CSPI03G34190	Wild cucumber (PI 183967)	carcpiB0281
Carg03704	Cucsa.378550	Cucumber (Gy14) v1	carcgyB0297
Carg03704	CmaCh06G004460	Cucurbita maxima (Rimu)	carcmaB0350
Carg03704	CmaCh14G002800	Cucurbita maxima (Rimu)	carcmaB0343
Carg03704	CmoCh14G002680	Cucurbita moschata (Rifu)	carcmoB0347
Carg03704	CmoCh06G004440	Cucurbita moschata (Rifu)	carcmoB0351
Carg03704	Lsi03G019380	Bottle gourd (USVL1VR-Ls)	carlsiB225
Carg03704	Cp4.1LG08g10320	Cucurbita pepo (Zucchini)	carcpeB0354
Carg03704	Cp4.1LG03g01080	Cucurbita pepo (Zucchini)	carcpeB0353
Carg03704	CsGy3G031970	Cucumber (Gy14) v2	carcgybB0263
Carg03704	CsaV3_3G036840	Cucumber (Chinese Long) v3	carcucB0279
Carg03704	Cla97C10G202450	Watermelon (97103) v2	carwmbB0254
Carg03704	Bhi11G001676	Wax gourd	carwgoB0316

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03704	Carg00921	Silver-seed gourd	carcarB180

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03704	Silver-seed gourd	carcarB276
Carg03704	Silver-seed gourd	carcarB293
Carg03704	Cucumber (Gy14) v2	carcgybB0264
Carg03704	Cucumber (Gy14) v2	carcgybB0265
Carg03704	Cucumber (Gy14) v1	carcgyB0291
Carg03704	Cucumber (Gy14) v1	carcgyB0299
Carg03704	Cucurbita maxima (Rimu)	carcmaB0348
Carg03704	Cucurbita maxima (Rimu)	carcmaB0351
Carg03704	Cucurbita moschata (Rifu)	carcmoB0349
Carg03704	Cucurbita moschata (Rifu)	carcmoB0352
Carg03704	Cucurbita pepo (Zucchini)	carcpeB0348
Carg03704	Cucurbita pepo (Zucchini)	carcpeB0351
Carg03704	Wild cucumber (PI 183967)	carcpiB0282
Carg03704	Wild cucumber (PI 183967)	carcpiB0283
Carg03704	Cucumber (Chinese Long) v2	carcuB0278
Carg03704	Cucumber (Chinese Long) v2	carcuB0279
Carg03704	Cucumber (Chinese Long) v3	carcucB0280
Carg03704	Cucumber (Chinese Long) v3	carcucB0281
Carg03704	Bottle gourd (USVL1VR-Ls)	carlsiB222
Carg03704	Bottle gourd (USVL1VR-Ls)	carlsiB223
Carg03704	Melon (DHL92) v3.5.1	carmeB0250
Carg03704	Melon (DHL92) v3.5.1	carmeB0251
Carg03704	Melon (DHL92) v3.5.1	carmeB0253
Carg03704	Melon (DHL92) v3.6.1	carmedB0260
Carg03704	Melon (DHL92) v3.6.1	carmedB0261
Carg03704	Melon (DHL92) v3.6.1	carmedB0263
Carg03704	Watermelon (Charleston Gray)	carwcgB0241
Carg03704	Watermelon (Charleston Gray)	carwcgB0242
Carg03704	Watermelon (97103) v1	carwmB0238
Carg03704	Watermelon (97103) v1	carwmB0239
Carg03704	Watermelon (97103) v2	carwmbB0255
Carg03704	Watermelon (97103) v2	carwmbB0256
Carg03704	Wax gourd	carwgoB0327
Carg03704	Wax gourd	carwgoB0329