CmoCh06G003300 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh06G003300
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCmo_Chr06 : 1611639 .. 1613533 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCTGCAAGCAATCCGCCGCAACGACGGGATGAACTACGGTGCCTATGGCCGCTTCATCCAGCTCGCACCGACTTCCTCTTCGTCCGCCTCGGCAACTGCTTCGCGCTCGTCTTGTTCTATGTTCTGTCGCTCCCGAGAATTTCCTCGGATCGAAGCTCATCGCCTTCTAATCAAAATCTGGCAGCCTTAGAGATGCCTACAATGTGTTCGGTAACATTTCCTACGAGAACGTTTTATCTTGGAATGCTTTGTTTATGAGTTACACTCTTCACAATATGCAATCTGATATGCTGAAGCTGTTTTTATCTTTGTTTAATTTGATATCGATGGATGCGAAGCCTGATAAGTTTAAGGTTACTTGTGTTTTGAAAGCGTTGGCGTTGTTGTTTTCTAATTTGATTTTGGTAATGGAAGTTCATTGTTTCATTCTTCGACGAGGGCTTGAGTCTCATCTTTTTGTGTCTATGCTTTGATACTCGAGGTGTAATTAGCTGGTTAGCGAAAACTGTGTTTGATAGAATGCCTGCGAGAGATATTGTCTTGGAATGCGATGTTGGCTGAGTACTCTCAGGGTTGGTTTTATGTGGAATGCAAGGAACTATTTAAAGAGATGTTGAGTTTAGTGGAGTTGAGGCCTAATGCAGTGACTGCTGTCATTGTTTTACAAGCTTGTGCTCAGTCAAATTATCTCATTTTTGGAATGGAAGTTCGTTGATTCGTCAATGAACGTCAGGTTGAAGTGGATGTTTCATTATGTAATGCTGTTATTGGATTATATGCAAAAAGTGCGGTAGCTTGGATTATGTTTGGGAGTTGTTTGAAGAAATGCCTGAGAAGGATGAGGTCACATGGCGCGATGATATCGTTCTACATGGTCCATGGTTTTGTTAACCAAGCAATAGATCTCTTTCCGAGTACTGAAAATGTCAGCATCGAGCAGATGTAATTGTTGAGGATCGTTGGAAGGGAGTCTCACGTCGACTAATTAAGGAGATGATCATAGATTTATAAGTAAGAAATACGTCTCCGTTGGTACGAGGCCTTTTGAAAAAACAAAAAATAAAATCATGAGAGTTTATGCTCAAAGTGGACAATACTATACCATTGAGTGCTAGAACAAACAGTAATGATGTGATTTTTGATCTGGTTCAGAGCAACCAATAAACTCGACTTGTAGATATATTTTGAGCAATGCAGTTGGATGGTTGCAGACCGAATACTATGACACTTGCGAGCGTTCTTCCCATCTTCTCACATTTTTCAACACCAAGGATGGGAAAGAAATTCATGCTTATGCCGTTAGAAACGGTTACGATGGGAATGTTTGTGTTGTCACTGCTATCATTGATTCTTATGCTAAGTCTGGTTACCTCCACAGGGCACGACTGGTTTGTGATCAATTTAAAGGTAGGAGTCTAATCATTTGGACAGCAATAATTTCAGCCTATGCTGCCAATGGAGGTGCTAACGTGGCTCTGAGTTTTTTTTATGAGATTCTGACAAATGGGATTCGGCCTGATTCAGTAGCCTTTACTCCAGTGTGTTCCTGTGCCCATTCAGGGGAGTTAGATGAAGCCTGGAAGATATTTAACGTCTTGTTACCTGAGTATGGAATTCAACCACTAATCGAGCACTATGCTTGCATGGTAGGAGTTCTTAGTCTAGCAGAAAAGCTCTCCGATGCTGTTGACTTTATTTCTAAAATGCCAATTGAACCCACTACAAAAGTTTGGGGTGCTTTGCTCAATGGGGCTTCCGTTGCTGGTGATGTTGAGCTTGGAAAGTGCGTTTTTGATAGTCTGCTTGACACCGAGCCTGAAAATACAGGTAACAATATCATCATGGATAACTTATATTCACTGTTTGGAAGGTGGAAAAAATCTGGCTAG

mRNA sequence

ATGGGTTCTGCAAGCAATCCGCCGCAACGACGGGATGAACTACGGTGCCTATGGCCGCTTCATCCAGCTCGCACCGACTTCCTCTTCGTCCGCCTCGGCAACTGCTTCGCGCTCGTCTTGTTCTATGTTCTGTCGCTCCCGAGAATTTCCTCGGATCGAAGCTCATCGCCTTCTAATCAAAATCTGGCAGCCTTAGAGATGCCTACAATGTGTTCGCGAAAACTGTGTTTGATAGAATGCCTGCGAGAGATATTGTCTTGGAATGCGATGTTGGCTGAGTACTCTCAGGGTTGGTTTTATGTGGAATGCAAGGAACTATTTAAAGAGATGTTGAGTTTAGTGGAGTTGAGGCCTAATGCAGTGACTGCTGTCATTGTTTTACAAGCTTGTGCTCAGTCAAATTATCTCATTTTTGGAATGGAATGCGGTAGCTTGGATTATGTTTGGGAGTTGTTTGAAGAAATGCCTGAGAAGGATGAGGTCACATGGCGCGATGATATCGTTCTACATGTTGGATGGTTGCAGACCGAATACTATGACACTTGCGAGCGTTCTTCCCATCTTCTCACATTTTTCAACACCAAGGATGGGAAAGAAATTCATGCTTATGCCGTTAGAAACGGTTACGATGGGAATGTTTGTGTTGTCACTGCTATCATTGATTCTTATGCTAAGTCTGGTTACCTCCACAGGGCACGACTGGTTTGTGATCAATTTAAAGGTAGGAGTCTAATCATTTGGACAGCAATAATTTCAGCCTATGCTGCCAATGGAGGTGCTAACGTGGCTCTGAGTTTTTTTTATGAGATTCTGACAAATGGGATTCGGCCTGATTCAGTAGCCTTTACTCCAGTGTGTTCCTGTGCCCATTCAGGGGAGTTAGATGAAGCCTGGAAGATATTTAACGTCTTGTTACCTGAGTATGGAATTCAACCACTAATCGAGCACTATGCTTGCATGGTAGGAGTTCTTAGTCTAGCAGAAAAGCTCTCCGATGCTGTTGACTTTATTTCTAAAATGCCAATTGAACCCACTACAAAAGTTTGGGGTGCTTTGCTCAATGGGGCTTCCGTTGCTGGTGATGTTGAGCTTGGAAAGTGCGTTTTTGATAGTCTGCTTGACACCGAGCCTGAAAATACAGGTAACAATATCATCATGGATAACTTATATTCACTGTTTGGAAGGTGGAAAAAATCTGGCTAG

Coding sequence (CDS)

ATGGGTTCTGCAAGCAATCCGCCGCAACGACGGGATGAACTACGGTGCCTATGGCCGCTTCATCCAGCTCGCACCGACTTCCTCTTCGTCCGCCTCGGCAACTGCTTCGCGCTCGTCTTGTTCTATGTTCTGTCGCTCCCGAGAATTTCCTCGGATCGAAGCTCATCGCCTTCTAATCAAAATCTGGCAGCCTTAGAGATGCCTACAATGTGTTCGCGAAAACTGTGTTTGATAGAATGCCTGCGAGAGATATTGTCTTGGAATGCGATGTTGGCTGAGTACTCTCAGGGTTGGTTTTATGTGGAATGCAAGGAACTATTTAAAGAGATGTTGAGTTTAGTGGAGTTGAGGCCTAATGCAGTGACTGCTGTCATTGTTTTACAAGCTTGTGCTCAGTCAAATTATCTCATTTTTGGAATGGAATGCGGTAGCTTGGATTATGTTTGGGAGTTGTTTGAAGAAATGCCTGAGAAGGATGAGGTCACATGGCGCGATGATATCGTTCTACATGTTGGATGGTTGCAGACCGAATACTATGACACTTGCGAGCGTTCTTCCCATCTTCTCACATTTTTCAACACCAAGGATGGGAAAGAAATTCATGCTTATGCCGTTAGAAACGGTTACGATGGGAATGTTTGTGTTGTCACTGCTATCATTGATTCTTATGCTAAGTCTGGTTACCTCCACAGGGCACGACTGGTTTGTGATCAATTTAAAGGTAGGAGTCTAATCATTTGGACAGCAATAATTTCAGCCTATGCTGCCAATGGAGGTGCTAACGTGGCTCTGAGTTTTTTTTATGAGATTCTGACAAATGGGATTCGGCCTGATTCAGTAGCCTTTACTCCAGTGTGTTCCTGTGCCCATTCAGGGGAGTTAGATGAAGCCTGGAAGATATTTAACGTCTTGTTACCTGAGTATGGAATTCAACCACTAATCGAGCACTATGCTTGCATGGTAGGAGTTCTTAGTCTAGCAGAAAAGCTCTCCGATGCTGTTGACTTTATTTCTAAAATGCCAATTGAACCCACTACAAAAGTTTGGGGTGCTTTGCTCAATGGGGCTTCCGTTGCTGGTGATGTTGAGCTTGGAAAGTGCGTTTTTGATAGTCTGCTTGACACCGAGCCTGAAAATACAGGTAACAATATCATCATGGATAACTTATATTCACTGTTTGGAAGGTGGAAAAAATCTGGCTAG
Homology
[Close]
BLAST of CmoCh06G003300 vs. Swiss-Prot
Match: PP191_ARATH (Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 5.1e-61
Identity = 119/208 (57.21%), Postives = 150/208 (72.12%), Query Frame = 1 

Query: 193 NTKDGKEIHAYAVRNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIIS 252
           N K GKEIHA+A+RNG D N+ V T+IID+YAK G+L  A+ V D  K RSLI WTAII+
Sbjct: 381 NLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIIT 440

Query: 253 AYAANGGANVALSFFYEILTNGIRPDSVAFTPVCSC-AHSGELDEAWKIFNVLLPEYGIQ 312
           AYA +G ++ A S F ++   G +PD V  T V S  AHSG+ D A  IF+ +L +Y I+
Sbjct: 441 AYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIE 500

Query: 313 PLIEHYACMVGVLSLAEKLSDAVDFISKMPIEPTTKVWGALLNGASVAGDVELGKCVFDS 372
           P +EHYACMV VLS A KLSDA++FISKMPI+P  KVWGALLNGASV GD+E+ +   D 
Sbjct: 501 PGVEHYACMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDR 560

Query: 373 LLDTEPENTGNNIIMDNLYSLFGRWKKS 400
           L + EPENTGN  IM NLY+  GRW+++
Sbjct: 561 LFEMEPENTGNYTIMANLYTQAGRWEEA 588

[Close]
BLAST of CmoCh06G003300 vs. Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana GN=DOT4 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.6e-45
Identity = 108/362 (29.83%), Postives = 178/362 (49.17%), Query Frame = 1 

Query: 82  REILSWNAMLAEYSQGWFYVECKELFKEMLSLVELRPNAVTAVIVLQACAQSNYLIFGM- 141
           R ++S+ +M+A Y++     E  +LF+EM     + P+  T   VL  CA+   L  G  
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEE-EGISPDVYTVTAVLNCCARYRLLDEGKR 419

Query: 142 -------------------------ECGSLDYVWELFEEMPEKDEVTWR----------- 201
                                    +CGS+     +F EM  KD ++W            
Sbjct: 420 VHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCY 479

Query: 202 --DDIVLHVGWLQTEYYDTCERSSHLL-----TFFNTKDGKEIHAYAVRNGYDGNVCVVT 261
             + + L    L+ + +   ER+   +     +      G+EIH Y +RNGY  +  V  
Sbjct: 480 ANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN 539

Query: 262 AIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFFYEILTNGIRP 321
           +++D YAK G L  A ++ D    + L+ WT +I+ Y  +G    A++ F ++   GI  
Sbjct: 540 SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA 599

Query: 322 DSVAFTPVC-SCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLAEKLSDAVDF 381
           D ++F  +  +C+HSG +DE W+ FN++  E  I+P +EHYAC+V +L+    L  A  F
Sbjct: 600 DEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRF 659

Query: 382 ISKMPIEPTTKVWGALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIMDNLYSLFGRW 399
           I  MPI P   +WGALL G  +  DV+L + V + + + EPENTG  ++M N+Y+   +W
Sbjct: 660 IENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKW 719

[Close]
BLAST of CmoCh06G003300 vs. Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.3e-44
Identity = 114/373 (30.56%), Postives = 184/373 (49.33%), Query Frame = 1 

Query: 70  MCSRKLCLIECLREILSWNAMLAEYSQGWFYVECKE-LFKEMLSLVELRPNAVTAVIVLQ 129
           +C+ KL      R+++SWN++++ YS   +  +C E L + M+S V  RPN VT + ++ 
Sbjct: 83  VCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMIS 142

Query: 130 ACAQSN-----------YLIFGM---------------ECGSLDYVWELFEEMPEKDEVT 189
           AC                + FG+               + G L    +LFE++  K+ V+
Sbjct: 143 ACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVS 202

Query: 190 WRDDIVLHVGWLQTE----YYDTCERSSH-------LLTFFNTKD------GKEIHAYAV 249
           W   IV+H+     E    Y++   R  H       L    + +D       + IH   +
Sbjct: 203 WNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIM 262

Query: 250 RNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALS 309
             G+ GN C+ TA++D Y+K G L  +  V  +      + WTA+++AYA +G    A+ 
Sbjct: 263 FGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIK 322

Query: 310 FFYEILTNGIRPDSVAFTPVCS-CAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVL 369
            F  ++  GI PD V FT + + C+HSG ++E    F  +   Y I P ++HY+CMV +L
Sbjct: 323 HFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLL 382

Query: 370 SLAEKLSDAVDFISKMPIEPTTKVWGALLNGASVAGDVELGKCVFDSLLDTEPENTGNNI 398
             +  L DA   I +MP+EP++ VWGALL    V  D +LG    + L + EP +  N +
Sbjct: 383 GRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYV 442

[Close]
BLAST of CmoCh06G003300 vs. Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.6e-44
Identity = 106/340 (31.18%), Postives = 164/340 (48.24%), Query Frame = 1 

Query: 82  REILSWNAMLAEYSQGWFYVECKELFKEMLSLVELRPNAVTAVIVLQACAQSNYLIFGME 141
           R  +SWNAMLA Y QG    E  E+ KE+  ++  R N  T   ++   AQ         
Sbjct: 310 RNEVSWNAMLAGYVQG----ERMEMAKELFDVMPCR-NVSTWNTMITGYAQ--------- 369

Query: 142 CGSLDYVWELFEEMPEKDEVTWRDDIVLHVGWLQTEYY--------------DTCERSSH 201
           CG +     LF++MP++D V+W     +  G+ Q+ +                   RSS 
Sbjct: 370 CGKISEAKNLFDKMPKRDPVSW---AAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSF 429

Query: 202 LLTFFNTKD------GKEIHAYAVRNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKG 261
                   D      GK++H   V+ GY+    V  A++  Y K G +  A  +  +  G
Sbjct: 430 SSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG 489

Query: 262 RSLIIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPVCS-CAHSGELDEAWKI 321
           + ++ W  +I+ Y+ +G   VAL FF  +   G++PD      V S C+H+G +D+  + 
Sbjct: 490 KDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQY 549

Query: 322 FNVLLPEYGIQPLIEHYACMVGVLSLAEKLSDAVDFISKMPIEPTTKVWGALLNGASVAG 381
           F  +  +YG+ P  +HYACMV +L  A  L DA + +  MP EP   +WG LL  + V G
Sbjct: 550 FYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHG 609

Query: 382 DVELGKCVFDSLLDTEPENTGNNIIMDNLYSLFGRWKKSG 401
           + EL +   D +   EPEN+G  +++ NLY+  GRW   G
Sbjct: 610 NTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVG 632

[Close]
BLAST of CmoCh06G003300 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.4e-42
Identity = 107/364 (29.40%), Postives = 178/364 (48.90%), Query Frame = 1 

Query: 81  LREILSWNAMLAEYSQGWFYVECKELFKEMLSLVELRPNAVTAVIVLQACAQSNYLIFGM 140
           +++++SWNAM++ Y++   Y E  ELFK+M+    +RP+  T V V+ ACAQS  +  G 
Sbjct: 228 VKDVVSWNAMISGYAETGNYKEALELFKDMMK-TNVRPDESTMVTVVSACAQSGSIELGR 287

Query: 141 E--------------------------CGSLDYVWELFEEMPEKDEVTW----------- 200
           +                          CG L+    LFE +P KD ++W           
Sbjct: 288 QVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMN 347

Query: 201 --RDDIVLHVGWLQTEYYDTCERSSHLL---TFFNTKD-GKEIHAYAVRN--GYDGNVCV 260
             ++ ++L    L++           +L         D G+ IH Y  +   G      +
Sbjct: 348 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL 407

Query: 261 VTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFFYEILTNGI 320
            T++ID YAK G +  A  V +    +SL  W A+I  +A +G A+ +   F  +   GI
Sbjct: 408 RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGI 467

Query: 321 RPDSVAFTPVCS-CAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLAEKLSDAV 380
           +PD + F  + S C+HSG LD    IF  +  +Y + P +EHY CM+ +L  +    +A 
Sbjct: 468 QPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAE 527

Query: 381 DFISKMPIEPTTKVWGALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIMDNLYSLFG 399
           + I+ M +EP   +W +LL    + G+VELG+   ++L+  EPEN G+ +++ N+Y+  G
Sbjct: 528 EMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAG 587

[Close]
BLAST of CmoCh06G003300 vs. TrEMBL
Match: M5W6C8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001024mg PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 2.5e-91
Identity = 193/396 (48.74%), Postives = 240/396 (60.61%), Query Frame = 1 

Query: 82  REILSWNAMLAEYSQGWFYVECKELFKEMLSLVELRPNAVTAVIVLQACAQSNYLIFGME 141
           R+ +SWN+M+A YSQ  +Y ECKELF+EML L  LRPN +T V VLQAC QSN LIFGME
Sbjct: 203 RDTVSWNSMIAGYSQAGYYAECKELFREMLRLGRLRPNGLTVVSVLQACLQSNDLIFGME 262

Query: 142 --------------------------CGSLDYVWELFEEMPEKDEVTWRDDIVLHVGWLQ 201
                                     CGSLDY  ELF  M EKDEVT+     L  G++ 
Sbjct: 263 VHQFVNESQIEMDIILCNALIGLYARCGSLDYAEELFHGMSEKDEVTYGS---LISGYMF 322

Query: 202 TEYYDTC------ERSSHLLTFFNTKDG--------------KEIHAYA----------- 261
             + D         +   L T+ +   G              +E+ A             
Sbjct: 323 HGFVDKAMDLFRESKKPRLSTWNSMISGLVQNNRHEAALDLIREMQACGYKPNTVTLSSI 382

Query: 262 --------------------VRNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSL 321
                               VRN +D N+ V TAIID+YAKSG +H A+ V +Q +G+SL
Sbjct: 383 LPAISYLSNLKAGKELHAYSVRNNFDANIYVATAIIDTYAKSGLVHGAQQVFNQSRGKSL 442

Query: 322 IIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNV 381
           IIWTAIISAYA++G A++AL  FYE+L NGI+PD V FT V  +CAHSG +DE+WKIF+ 
Sbjct: 443 IIWTAIISAYASHGDADMALGLFYEMLNNGIQPDQVTFTAVLTACAHSGVVDESWKIFDA 502

Query: 382 LLPEYGIQPLIEHYACMVGVLSLAEKLSDAVDFISKMPIEPTTKVWGALLNGASVAGDVE 400
           + P+YGIQP +EHYACMVGVLS A +LS+A+DFI KMP+EP+ KVWGALLNGASV+GDVE
Sbjct: 503 MFPKYGIQPSVEHYACMVGVLSRAGRLSEAIDFIHKMPVEPSAKVWGALLNGASVSGDVE 562

[Close]
BLAST of CmoCh06G003300 vs. TrEMBL
Match: A0A0A0LFN1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736590 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 3.1e-89
Identity = 191/336 (56.85%), Postives = 224/336 (66.67%), Query Frame = 1 

Query: 83  EILSWNAMLAEYSQGWFYVECKELFKEMLSLVELRPNAVTAVIVLQACAQSNYLIFGMEC 142
           ++  WNA++  Y++       +ELF+EML       +A+T   ++     S Y++ G   
Sbjct: 244 DVSLWNAVIGLYAKCGSLDYARELFEEMLE-----KDAITYCSMI-----SGYMVHGFVN 303

Query: 143 GSLDYVWELFEEMPEKDEVTWRDDIVLHVGWLQTEYYD-----------------TCERS 202
            ++D    LF E       TW   I    G +Q    +                 T   +
Sbjct: 304 QAMD----LFREQERPRLPTWNAVIS---GLVQNNRQEGAVDIFRAMQSHGCRPNTVTLA 363

Query: 203 SHLLTF--FNT-KDGKEIHAYAVRNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGR 262
           S L  F  F+T K GKEIH YA+RN YD N+ V TAIIDSYAK GYLH A+LV DQ KGR
Sbjct: 364 SILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGR 423

Query: 263 SLIIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIF 322
           SLI WT+IISAYA +G ANVALS FYE+LTNGI+PD V FT V  +CAHSGELDEAWKIF
Sbjct: 424 SLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIF 483

Query: 323 NVLLPEYGIQPLIEHYACMVGVLSLAEKLSDAVDFISKMPIEPTTKVWGALLNGASVAGD 382
           NVLLPEYGIQPL+EHYACMVGVLS A KLSDAV+FISKMP+EPT KVWGALLNGASVAGD
Sbjct: 484 NVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGD 543

Query: 383 VELGKCVFDSLLDTEPENTGNNIIMDNLYSLFGRWK 398
           VELGK VFD L + EPENTGN +IM NLYS  GRWK
Sbjct: 544 VELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWK 562

[Close]
BLAST of CmoCh06G003300 vs. TrEMBL
Match: A0A061ETI0_THECC (Pentatricopeptide repeat (PPR) superfamily protein, putative OS=Theobroma cacao GN=TCM_022051 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 8.6e-84
Identity = 186/396 (46.97%), Postives = 232/396 (58.59%), Query Frame = 1 

Query: 82  REILSWNAMLAEYSQGWFYVECKELFKEMLSLVELRPNAVTAVIVLQACAQSNYLIFGME 141
           R+I+SWN+M++ YS G FY ECK L++EM+  +E RPN VT + VLQAC QSN LI GME
Sbjct: 203 RDIVSWNSMISGYSHGGFYEECKALYREMVDSLECRPNGVTVLSVLQACGQSNDLILGME 262

Query: 142 --------------------------CGSLDYVWELFEEMPEKDEVTWRDDIVLHVGWLQ 201
                                     CGSLDY  ELFE M +KDEVT+     L  G++ 
Sbjct: 263 VHQCIVENRIEMDVSVCNALIGLYAKCGSLDYARELFEGMSDKDEVTYG---ALIYGFMF 322

Query: 202 TEYYDT-----CERSSHLLTFFNTKDG---------------KEIHAYAVRNG------- 261
             + D      CE     L+ +N+                  +E+ +   R         
Sbjct: 323 HGFSDKAMELFCELKLPGLSTWNSVISGLFQNKQYDRILDLVREMQSCGFRPNTVTLSSI 382

Query: 262 ------------------------YDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSL 321
                                   YD ++ V TA+ID+YAK G+L  A+ V DQ K RSL
Sbjct: 383 LPTFSYFSNLKGGKEIHAYAVRNNYDRSIYVATALIDTYAKLGFLCGAQRVFDQSKCRSL 442

Query: 322 IIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPVCS-CAHSGELDEAWKIFNV 381
           IIWTAII+AY+A+G  N AL +F+E+L NGI+PD V FT V S CAHSG +DEA KIF+ 
Sbjct: 443 IIWTAIIAAYSAHGDVNAALGYFHEMLNNGIQPDPVTFTAVLSACAHSGMVDEAQKIFDA 502

Query: 382 LLPEYGIQPLIEHYACMVGVLSLAEKLSDAVDFISKMPIEPTTKVWGALLNGASVAGDVE 400
           +L EYGI P +EHYACMVGVLS A +LS+A +FISKMPIEP+ KVWGALLNGASV  D E
Sbjct: 503 MLEEYGISPSVEHYACMVGVLSRAGRLSEAKEFISKMPIEPSAKVWGALLNGASVCADAE 562

[Close]
BLAST of CmoCh06G003300 vs. TrEMBL
Match: A0A059DDP8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01207 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 7.3e-83
Identity = 178/372 (47.85%), Postives = 226/372 (60.75%), Query Frame = 1 

Query: 82  REILSWNAMLAEYSQGWFYVECKELFKEMLSLVELRPNAVTAVIVLQACAQSNYLIFGME 141
           R+I+SWN+M+A YSQ  +Y ECKEL++EM+    LRPN VT V VLQAC QS  LIFGM+
Sbjct: 190 RDIVSWNSMIAGYSQCGYYRECKELYREMVES-GLRPNGVTVVSVLQACGQSQDLIFGMD 249

Query: 142 --------------------------CGSLDYVWELFEEMPEKDEVTWRDDIVLHVGWLQ 201
                                     CGSLDY  ELFEEM EKDEVT+     +  G++ 
Sbjct: 250 VHKLVIDCQVQVDISLYNALIGCYAKCGSLDYARELFEEMDEKDEVTYG---AIVSGYMV 309

Query: 202 TEYYDTCERSSHLLTFFNTKDGKEIHAYAVRNGYDGNVCVV------------------- 261
             + D        +          + +  V+N + G V  +                   
Sbjct: 310 HGFVDKAMGIFQGMKCPGLSTWNAVISGLVQNNHHGEVLDLFREMLDSGTRPNTVTLSSI 369

Query: 262 --------TAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFFY 321
                   TAIID+YAKSG+++ A+ V D+ KG SLI+WTAIISAYAA+G A  AL  F 
Sbjct: 370 LPTCSFFSTAIIDTYAKSGFINGAQQVFDRLKGSSLIVWTAIISAYAAHGDAITALGLFD 429

Query: 322 EILTNGIRPDSVAFTPVCS-CAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLA 381
            + T GI+PD V  T V S C+H+G +D AWKIFN +LP YGI+PL+EHYACMVGVLS A
Sbjct: 430 NMQTRGIQPDPVTITAVLSACSHNGLVDVAWKIFNEMLPNYGIEPLVEHYACMVGVLSRA 489

Query: 382 EKLSDAVDFISKMPIEPTTKVWGALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIMD 400
           ++LS+A +FI  MPI+P+ KVWGALLNGASV+GDVELGK   D L + EPENTGN +IM 
Sbjct: 490 KRLSEAAEFIRMMPIQPSAKVWGALLNGASVSGDVELGKFACDHLFEIEPENTGNYVIMA 549

[Close]
BLAST of CmoCh06G003300 vs. TrEMBL
Match: F6HQW5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g02940 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.3e-76
Identity = 172/396 (43.43%), Postives = 226/396 (57.07%), Query Frame = 1 

Query: 82  REILSWNAMLAEYSQGWFYVECKELFKEMLSLVELRPNAVTAVIVLQACAQSNYLIFGM- 141
           R+I+SWN+M+A YSQG FY +CKEL+++ML    LRPN VT V VLQACAQ+N L+FGM 
Sbjct: 203 RDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMK 262

Query: 142 -------------------------ECGSLDYVWELFEEMPEKDEVTWRDDIVLHVGWLQ 201
                                    +CGSLDY  ELF EM  KDEVT+   +    G++ 
Sbjct: 263 VHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIV---SGYMT 322

Query: 202 TEYYDTC-----ERSSHLLTFFNT----------KDG-KEIHAYAVRNGYDGNVCVVTAI 261
             + D       E  +  L+ +N            +G  E+       G+  N   +++I
Sbjct: 323 HGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSI 382

Query: 262 IDSYA----------------KSGYLHRARLVCD-------------------QFKGRSL 321
           + +++                ++GY H   +                      Q K RSL
Sbjct: 383 LPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSL 442

Query: 322 IIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNV 381
           I+WTAIISAY+A+G AN AL  F ++L+NG +PD V FT V  +CAHSG ++EAWKIF+ 
Sbjct: 443 IVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDE 502

Query: 382 LLPEYGIQPLIEHYACMVGVLSLAEKLSDAVDFISKMPIEPTTKVWGALLNGASVAGDVE 400
           +  +YG QP +EHYACMVGVLS A  LS+A +FI KMPIEP  KVWGALLNG SV+GDVE
Sbjct: 503 MFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKMPIEPNAKVWGALLNGVSVSGDVE 562

[Close]
BLAST of CmoCh06G003300 vs. TAIR10
Match: AT2G37310.1 (AT2G37310.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 236.5 bits (602), Expect = 2.8e-62
Identity = 119/208 (57.21%), Postives = 150/208 (72.12%), Query Frame = 1 

Query: 193 NTKDGKEIHAYAVRNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIIS 252
           N K GKEIHA+A+RNG D N+ V T+IID+YAK G+L  A+ V D  K RSLI WTAII+
Sbjct: 381 NLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIIT 440

Query: 253 AYAANGGANVALSFFYEILTNGIRPDSVAFTPVCSC-AHSGELDEAWKIFNVLLPEYGIQ 312
           AYA +G ++ A S F ++   G +PD V  T V S  AHSG+ D A  IF+ +L +Y I+
Sbjct: 441 AYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIE 500

Query: 313 PLIEHYACMVGVLSLAEKLSDAVDFISKMPIEPTTKVWGALLNGASVAGDVELGKCVFDS 372
           P +EHYACMV VLS A KLSDA++FISKMPI+P  KVWGALLNGASV GD+E+ +   D 
Sbjct: 501 PGVEHYACMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDR 560

Query: 373 LLDTEPENTGNNIIMDNLYSLFGRWKKS 400
           L + EPENTGN  IM NLY+  GRW+++
Sbjct: 561 LFEMEPENTGNYTIMANLYTQAGRWEEA 588

[Close]
BLAST of CmoCh06G003300 vs. TAIR10
Match: AT4G18750.1 (AT4G18750.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 183.0 bits (463), Expect = 3.7e-46
Identity = 108/362 (29.83%), Postives = 178/362 (49.17%), Query Frame = 1 

Query: 82  REILSWNAMLAEYSQGWFYVECKELFKEMLSLVELRPNAVTAVIVLQACAQSNYLIFGM- 141
           R ++S+ +M+A Y++     E  +LF+EM     + P+  T   VL  CA+   L  G  
Sbjct: 360 RSVVSYTSMIAGYAREGLAGEAVKLFEEMEE-EGISPDVYTVTAVLNCCARYRLLDEGKR 419

Query: 142 -------------------------ECGSLDYVWELFEEMPEKDEVTWR----------- 201
                                    +CGS+     +F EM  KD ++W            
Sbjct: 420 VHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCY 479

Query: 202 --DDIVLHVGWLQTEYYDTCERSSHLL-----TFFNTKDGKEIHAYAVRNGYDGNVCVVT 261
             + + L    L+ + +   ER+   +     +      G+EIH Y +RNGY  +  V  
Sbjct: 480 ANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN 539

Query: 262 AIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFFYEILTNGIRP 321
           +++D YAK G L  A ++ D    + L+ WT +I+ Y  +G    A++ F ++   GI  
Sbjct: 540 SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA 599

Query: 322 DSVAFTPVC-SCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLAEKLSDAVDF 381
           D ++F  +  +C+HSG +DE W+ FN++  E  I+P +EHYAC+V +L+    L  A  F
Sbjct: 600 DEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRF 659

Query: 382 ISKMPIEPTTKVWGALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIMDNLYSLFGRW 399
           I  MPI P   +WGALL G  +  DV+L + V + + + EPENTG  ++M N+Y+   +W
Sbjct: 660 IENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKW 719

[Close]
BLAST of CmoCh06G003300 vs. TAIR10
Match: AT5G40410.1 (AT5G40410.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 180.3 bits (456), Expect = 2.4e-45
Identity = 114/373 (30.56%), Postives = 184/373 (49.33%), Query Frame = 1 

Query: 70  MCSRKLCLIECLREILSWNAMLAEYSQGWFYVECKE-LFKEMLSLVELRPNAVTAVIVLQ 129
           +C+ KL      R+++SWN++++ YS   +  +C E L + M+S V  RPN VT + ++ 
Sbjct: 83  VCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMIS 142

Query: 130 ACAQSN-----------YLIFGM---------------ECGSLDYVWELFEEMPEKDEVT 189
           AC                + FG+               + G L    +LFE++  K+ V+
Sbjct: 143 ACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVS 202

Query: 190 WRDDIVLHVGWLQTE----YYDTCERSSH-------LLTFFNTKD------GKEIHAYAV 249
           W   IV+H+     E    Y++   R  H       L    + +D       + IH   +
Sbjct: 203 WNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIM 262

Query: 250 RNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALS 309
             G+ GN C+ TA++D Y+K G L  +  V  +      + WTA+++AYA +G    A+ 
Sbjct: 263 FGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIK 322

Query: 310 FFYEILTNGIRPDSVAFTPVCS-CAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVL 369
            F  ++  GI PD V FT + + C+HSG ++E    F  +   Y I P ++HY+CMV +L
Sbjct: 323 HFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLL 382

Query: 370 SLAEKLSDAVDFISKMPIEPTTKVWGALLNGASVAGDVELGKCVFDSLLDTEPENTGNNI 398
             +  L DA   I +MP+EP++ VWGALL    V  D +LG    + L + EP +  N +
Sbjct: 383 GRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYV 442

[Close]
BLAST of CmoCh06G003300 vs. TAIR10
Match: AT4G02750.1 (AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 179.1 bits (453), Expect = 5.4e-45
Identity = 106/340 (31.18%), Postives = 164/340 (48.24%), Query Frame = 1 

Query: 82  REILSWNAMLAEYSQGWFYVECKELFKEMLSLVELRPNAVTAVIVLQACAQSNYLIFGME 141
           R  +SWNAMLA Y QG    E  E+ KE+  ++  R N  T   ++   AQ         
Sbjct: 310 RNEVSWNAMLAGYVQG----ERMEMAKELFDVMPCR-NVSTWNTMITGYAQ--------- 369

Query: 142 CGSLDYVWELFEEMPEKDEVTWRDDIVLHVGWLQTEYY--------------DTCERSSH 201
           CG +     LF++MP++D V+W     +  G+ Q+ +                   RSS 
Sbjct: 370 CGKISEAKNLFDKMPKRDPVSW---AAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSF 429

Query: 202 LLTFFNTKD------GKEIHAYAVRNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKG 261
                   D      GK++H   V+ GY+    V  A++  Y K G +  A  +  +  G
Sbjct: 430 SSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG 489

Query: 262 RSLIIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPVCS-CAHSGELDEAWKI 321
           + ++ W  +I+ Y+ +G   VAL FF  +   G++PD      V S C+H+G +D+  + 
Sbjct: 490 KDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQY 549

Query: 322 FNVLLPEYGIQPLIEHYACMVGVLSLAEKLSDAVDFISKMPIEPTTKVWGALLNGASVAG 381
           F  +  +YG+ P  +HYACMV +L  A  L DA + +  MP EP   +WG LL  + V G
Sbjct: 550 FYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHG 609

Query: 382 DVELGKCVFDSLLDTEPENTGNNIIMDNLYSLFGRWKKSG 401
           + EL +   D +   EPEN+G  +++ NLY+  GRW   G
Sbjct: 610 NTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVG 632

[Close]
BLAST of CmoCh06G003300 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 175.3 bits (443), Expect = 7.8e-44
Identity = 107/364 (29.40%), Postives = 178/364 (48.90%), Query Frame = 1 

Query: 81  LREILSWNAMLAEYSQGWFYVECKELFKEMLSLVELRPNAVTAVIVLQACAQSNYLIFGM 140
           +++++SWNAM++ Y++   Y E  ELFK+M+    +RP+  T V V+ ACAQS  +  G 
Sbjct: 228 VKDVVSWNAMISGYAETGNYKEALELFKDMMK-TNVRPDESTMVTVVSACAQSGSIELGR 287

Query: 141 E--------------------------CGSLDYVWELFEEMPEKDEVTW----------- 200
           +                          CG L+    LFE +P KD ++W           
Sbjct: 288 QVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMN 347

Query: 201 --RDDIVLHVGWLQTEYYDTCERSSHLL---TFFNTKD-GKEIHAYAVRN--GYDGNVCV 260
             ++ ++L    L++           +L         D G+ IH Y  +   G      +
Sbjct: 348 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL 407

Query: 261 VTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFFYEILTNGI 320
            T++ID YAK G +  A  V +    +SL  W A+I  +A +G A+ +   F  +   GI
Sbjct: 408 RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGI 467

Query: 321 RPDSVAFTPVCS-CAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLAEKLSDAV 380
           +PD + F  + S C+HSG LD    IF  +  +Y + P +EHY CM+ +L  +    +A 
Sbjct: 468 QPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAE 527

Query: 381 DFISKMPIEPTTKVWGALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIMDNLYSLFG 399
           + I+ M +EP   +W +LL    + G+VELG+   ++L+  EPEN G+ +++ N+Y+  G
Sbjct: 528 EMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAG 587

[Close]
BLAST of CmoCh06G003300 vs. NCBI nr
Match: gi|595840869|ref|XP_007208103.1| (hypothetical protein PRUPE_ppa001024mg [Prunus persica])

HSP 1 Score: 344.0 bits (881), Expect = 3.6e-91
Identity = 193/396 (48.74%), Postives = 240/396 (60.61%), Query Frame = 1 

Query: 82  REILSWNAMLAEYSQGWFYVECKELFKEMLSLVELRPNAVTAVIVLQACAQSNYLIFGME 141
           R+ +SWN+M+A YSQ  +Y ECKELF+EML L  LRPN +T V VLQAC QSN LIFGME
Sbjct: 203 RDTVSWNSMIAGYSQAGYYAECKELFREMLRLGRLRPNGLTVVSVLQACLQSNDLIFGME 262

Query: 142 --------------------------CGSLDYVWELFEEMPEKDEVTWRDDIVLHVGWLQ 201
                                     CGSLDY  ELF  M EKDEVT+     L  G++ 
Sbjct: 263 VHQFVNESQIEMDIILCNALIGLYARCGSLDYAEELFHGMSEKDEVTYGS---LISGYMF 322

Query: 202 TEYYDTC------ERSSHLLTFFNTKDG--------------KEIHAYA----------- 261
             + D         +   L T+ +   G              +E+ A             
Sbjct: 323 HGFVDKAMDLFRESKKPRLSTWNSMISGLVQNNRHEAALDLIREMQACGYKPNTVTLSSI 382

Query: 262 --------------------VRNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSL 321
                               VRN +D N+ V TAIID+YAKSG +H A+ V +Q +G+SL
Sbjct: 383 LPAISYLSNLKAGKELHAYSVRNNFDANIYVATAIIDTYAKSGLVHGAQQVFNQSRGKSL 442

Query: 322 IIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNV 381
           IIWTAIISAYA++G A++AL  FYE+L NGI+PD V FT V  +CAHSG +DE+WKIF+ 
Sbjct: 443 IIWTAIISAYASHGDADMALGLFYEMLNNGIQPDQVTFTAVLTACAHSGVVDESWKIFDA 502

Query: 382 LLPEYGIQPLIEHYACMVGVLSLAEKLSDAVDFISKMPIEPTTKVWGALLNGASVAGDVE 400
           + P+YGIQP +EHYACMVGVLS A +LS+A+DFI KMP+EP+ KVWGALLNGASV+GDVE
Sbjct: 503 MFPKYGIQPSVEHYACMVGVLSRAGRLSEAIDFIHKMPVEPSAKVWGALLNGASVSGDVE 562

[Close]
BLAST of CmoCh06G003300 vs. NCBI nr
Match: gi|778683660|ref|XP_004137952.2| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g37310 [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 4.4e-89
Identity = 191/336 (56.85%), Postives = 224/336 (66.67%), Query Frame = 1 

Query: 83  EILSWNAMLAEYSQGWFYVECKELFKEMLSLVELRPNAVTAVIVLQACAQSNYLIFGMEC 142
           ++  WNA++  Y++       +ELF+EML       +A+T   ++     S Y++ G   
Sbjct: 244 DVSLWNAVIGLYAKCGSLDYARELFEEMLE-----KDAITYCSMI-----SGYMVHGFVN 303

Query: 143 GSLDYVWELFEEMPEKDEVTWRDDIVLHVGWLQTEYYD-----------------TCERS 202
            ++D    LF E       TW   I    G +Q    +                 T   +
Sbjct: 304 QAMD----LFREQERPRLPTWNAVIS---GLVQNNRQEGAVDIFRAMQSHGCRPNTVTLA 363

Query: 203 SHLLTF--FNT-KDGKEIHAYAVRNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGR 262
           S L  F  F+T K GKEIH YA+RN YD N+ V TAIIDSYAK GYLH A+LV DQ KGR
Sbjct: 364 SILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGR 423

Query: 263 SLIIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIF 322
           SLI WT+IISAYA +G ANVALS FYE+LTNGI+PD V FT V  +CAHSGELDEAWKIF
Sbjct: 424 SLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIF 483

Query: 323 NVLLPEYGIQPLIEHYACMVGVLSLAEKLSDAVDFISKMPIEPTTKVWGALLNGASVAGD 382
           NVLLPEYGIQPL+EHYACMVGVLS A KLSDAV+FISKMP+EPT KVWGALLNGASVAGD
Sbjct: 484 NVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGD 543

Query: 383 VELGKCVFDSLLDTEPENTGNNIIMDNLYSLFGRWK 398
           VELGK VFD L + EPENTGN +IM NLYS  GRWK
Sbjct: 544 VELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWK 562

[Close]
BLAST of CmoCh06G003300 vs. NCBI nr
Match: gi|700203778|gb|KGN58911.1| (hypothetical protein Csa_3G736590 [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 4.4e-89
Identity = 191/336 (56.85%), Postives = 224/336 (66.67%), Query Frame = 1 

Query: 83  EILSWNAMLAEYSQGWFYVECKELFKEMLSLVELRPNAVTAVIVLQACAQSNYLIFGMEC 142
           ++  WNA++  Y++       +ELF+EML       +A+T   ++     S Y++ G   
Sbjct: 244 DVSLWNAVIGLYAKCGSLDYARELFEEMLE-----KDAITYCSMI-----SGYMVHGFVN 303

Query: 143 GSLDYVWELFEEMPEKDEVTWRDDIVLHVGWLQTEYYD-----------------TCERS 202
            ++D    LF E       TW   I    G +Q    +                 T   +
Sbjct: 304 QAMD----LFREQERPRLPTWNAVIS---GLVQNNRQEGAVDIFRAMQSHGCRPNTVTLA 363

Query: 203 SHLLTF--FNT-KDGKEIHAYAVRNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGR 262
           S L  F  F+T K GKEIH YA+RN YD N+ V TAIIDSYAK GYLH A+LV DQ KGR
Sbjct: 364 SILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGR 423

Query: 263 SLIIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIF 322
           SLI WT+IISAYA +G ANVALS FYE+LTNGI+PD V FT V  +CAHSGELDEAWKIF
Sbjct: 424 SLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIF 483

Query: 323 NVLLPEYGIQPLIEHYACMVGVLSLAEKLSDAVDFISKMPIEPTTKVWGALLNGASVAGD 382
           NVLLPEYGIQPL+EHYACMVGVLS A KLSDAV+FISKMP+EPT KVWGALLNGASVAGD
Sbjct: 484 NVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGD 543

Query: 383 VELGKCVFDSLLDTEPENTGNNIIMDNLYSLFGRWK 398
           VELGK VFD L + EPENTGN +IM NLYS  GRWK
Sbjct: 544 VELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRWK 562

[Close]
BLAST of CmoCh06G003300 vs. NCBI nr
Match: gi|659083912|ref|XP_008442606.1| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g37310 [Cucumis melo])

HSP 1 Score: 320.5 bits (820), Expect = 4.3e-84
Identity = 157/210 (74.76%), Postives = 173/210 (82.38%), Query Frame = 1 

Query: 191 FFNTKDGKEIHAYAVRNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAI 250
           F   K GKEIH YA+RN YDGN+ V TAIIDSYAK GYL  AR V DQ KGRSLI WT+I
Sbjct: 355 FSTLKGGKEIHGYAIRNTYDGNIFVATAIIDSYAKCGYLQGARQVFDQLKGRSLIAWTSI 414

Query: 251 ISAYAANGGANVALSFFYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYG 310
           ISAYA +G ANVALS FYE+LT GI+PD V FT V  +CAHSGELDEAWKIFN+LLP+YG
Sbjct: 415 ISAYAVHGDANVALSLFYEMLTYGIQPDQVTFTSVLAACAHSGELDEAWKIFNILLPDYG 474

Query: 311 IQPLIEHYACMVGVLSLAEKLSDAVDFISKMPIEPTTKVWGALLNGASVAGDVELGKCVF 370
           IQPL+EHYACMVGVLS A KLSDAV+FISKMP+EP  KVWGALLNGASVAGDVELGK VF
Sbjct: 475 IQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPNAKVWGALLNGASVAGDVELGKYVF 534

Query: 371 DSLLDTEPENTGNNIIMDNLYSLFGRWKKS 400
           D L + EP NTGN +IM NLYS  GRWK++
Sbjct: 535 DRLFEIEPGNTGNYVIMANLYSQSGRWKEA 564

[Close]
BLAST of CmoCh06G003300 vs. NCBI nr
Match: gi|645220807|ref|XP_008241927.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g37310 [Prunus mume])

HSP 1 Score: 319.3 bits (817), Expect = 9.5e-84
Identity = 184/396 (46.46%), Postives = 234/396 (59.09%), Query Frame = 1 

Query: 82  REILSWNAMLAEYSQGWFYVECKELFKEMLSLVELRPNAVTAVIVLQACAQSNYLIFGME 141
           R+ +SWN+M+A YSQ  +Y ECKELF+EML L  LRPN +T V VLQAC QS+ LIFGME
Sbjct: 203 RDTVSWNSMIAGYSQAGYYAECKELFREMLRLGRLRPNGLTVVSVLQACLQSSDLIFGME 262

Query: 142 --------------------------CGSLDYVWELFEEMPEKDEVTWRDDIVLHVGWLQ 201
                                     CGSLDY  ELF  M EKDEVT+     L  G++ 
Sbjct: 263 VHQFVNESQIEMDIILCNALIGLYARCGSLDYAEELFHGMSEKDEVTYGS---LISGYMF 322

Query: 202 TEYYDTC-----ERSSHLLTFFNT-------KDGKEIHAYAVRN----GYDGNVCVVTAI 261
             + D       E     L+ +N+        +  E     +R     G   N   +++I
Sbjct: 323 HGFVDKAMDLFRESKKPRLSTWNSMISGLVQNNRHEAALDLIREMQACGCKPNTVALSSI 382

Query: 262 ID-----------------------------------SYAKSGYLHRARLVCDQFKGRSL 321
           +                                    +YAKSG++H A+ V +Q +G+SL
Sbjct: 383 LPAISYLSNLKAGKELHAYSVRNNFDANIYVATAIIDTYAKSGFVHGAQQVFNQSRGKSL 442

Query: 322 IIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNV 381
           IIWTAIISAYA++G A++AL  FYE+L NGI+PD V FT V  +CAHSG +DEAWKIF+ 
Sbjct: 443 IIWTAIISAYASHGDADMALGLFYEMLNNGIQPDQVTFTAVLTACAHSGVVDEAWKIFDA 502

Query: 382 LLPEYGIQPLIEHYACMVGVLSLAEKLSDAVDFISKMPIEPTTKVWGALLNGASVAGDVE 400
           + P+YGIQP +EHYACMVGVLS A +LS+A+D I KMP+EP+ KVWGALLNGASV+GDVE
Sbjct: 503 MFPKYGIQPSVEHYACMVGVLSRAGRLSEAIDLIHKMPVEPSAKVWGALLNGASVSGDVE 562

The following BLAST results are available for this feature:
BLAST of CmoCh06G003300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP191_ARATH5.1e-6157.21Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana GN... [more]
PP320_ARATH6.6e-4529.83Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis t... [more]
PP411_ARATH4.3e-4430.56Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidop... [more]
PP301_ARATH9.6e-4431.18Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN... [more]
PPR21_ARATH1.4e-4229.40Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
BLAST of CmoCh06G003300 vs. TrEMBL
Match NameE-valueIdentityDescription
M5W6C8_PRUPE2.5e-9148.74Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001024mg PE=4 SV=1[more]
A0A0A0LFN1_CUCSA3.1e-8956.85Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736590 PE=4 SV=1[more]
A0A061ETI0_THECC8.6e-8446.97Pentatricopeptide repeat (PPR) superfamily protein, putative OS=Theobroma cacao ... [more]
A0A059DDP8_EUCGR7.3e-8347.85Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01207 PE=4 SV=1[more]
F6HQW5_VITVI1.3e-7643.43Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0040g02940 PE=4 SV=... [more]
BLAST of CmoCh06G003300 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G37310.12.8e-6257.21 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G18750.13.7e-4629.83 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G40410.12.4e-4530.56 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT4G02750.15.4e-4531.18 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G08070.17.8e-4429.40 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of CmoCh06G003300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|595840869|ref|XP_007208103.1|3.6e-9148.74hypothetical protein PRUPE_ppa001024mg [Prunus persica][more]
gi|778683660|ref|XP_004137952.2|4.4e-8956.85PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g... [more]
gi|700203778|gb|KGN58911.1|4.4e-8956.85hypothetical protein Csa_3G736590 [Cucumis sativus][more]
gi|659083912|ref|XP_008442606.1|4.3e-8474.76PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g... [more]
gi|645220807|ref|XP_008241927.1|9.5e-8446.46PREDICTED: pentatricopeptide repeat-containing protein At2g37310 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0015748 organophosphate ester transport
biological_process GO:0009451 RNA modification
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0008152 metabolic process
biological_process GO:0015716 organic phosphonate transport
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0015416 ATPase-coupled organic phosphonate transmembrane transporter activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0016887 ATPase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G003300.1CmoCh06G003300.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 246..275
score: 0.0069coord: 216..241
score: 0.48coord: 86..112
score: 0.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 246..279
score: 0.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 83..113
score: 6.785coord: 345..379
score: 5.853coord: 243..277
score: 9.471coord: 212..242
score: 6.106coord: 285..312
score: 5
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 82..397
score: 7.0E
NoneNo IPR availablePANTHERPTHR24015:SF38SUBFAMILY NOT NAMEDcoord: 82..397
score: 7.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh06G003300CmaCh14G001800Cucurbita maxima (Rimu)cmacmoB268
CmoCh06G003300CmaCh06G003340Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G003300Cla017860Watermelon (97103) v1cmowmB782
CmoCh06G003300ClCG10G020730Watermelon (Charleston Gray)cmowcgB729
CmoCh06G003300CSPI03G32680Wild cucumber (PI 183967)cmocpiB815
CmoCh06G003300Lsi03G020720Bottle gourd (USVL1VR-Ls)cmolsiB747
CmoCh06G003300MELO3C031024.2Melon (DHL92) v3.6.1cmomedB849
CmoCh06G003300Cla97C10G203950Watermelon (97103) v2cmowmbB818
CmoCh06G003300Bhi11G001836Wax gourdcmowgoB0983
CmoCh06G003300CsGy3G030460Cucumber (Gy14) v2cgybcmoB402
CmoCh06G003300Carg01023Silver-seed gourdcarcmoB0227
CmoCh06G003300Carg12580Silver-seed gourdcarcmoB1343
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh06G003300CmoCh14G001670Cucurbita moschata (Rifu)cmocmoB222
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G003300Silver-seed gourdcarcmoB0640
CmoCh06G003300Silver-seed gourdcarcmoB1248
CmoCh06G003300Cucumber (Chinese Long) v3cmocucB0954
CmoCh06G003300Cucumber (Chinese Long) v3cmocucB0978
CmoCh06G003300Cucumber (Chinese Long) v3cmocucB0973
CmoCh06G003300Watermelon (97103) v2cmowmbB826
CmoCh06G003300Watermelon (97103) v2cmowmbB829
CmoCh06G003300Watermelon (97103) v2cmowmbB831
CmoCh06G003300Wax gourdcmowgoB1029
CmoCh06G003300Cucurbita moschata (Rifu)cmocmoB422
CmoCh06G003300Cucurbita moschata (Rifu)cmocmoB436
CmoCh06G003300Cucurbita moschata (Rifu)cmocmoB453
CmoCh06G003300Cucurbita moschata (Rifu)cmocmoB475
CmoCh06G003300Cucurbita moschata (Rifu)cmocmoB483
CmoCh06G003300Cucumber (Gy14) v1cgycmoB0101
CmoCh06G003300Cucumber (Gy14) v1cgycmoB0476
CmoCh06G003300Cucumber (Gy14) v1cgycmoB0844
CmoCh06G003300Cucurbita maxima (Rimu)cmacmoB873
CmoCh06G003300Wild cucumber (PI 183967)cmocpiB834
CmoCh06G003300Cucumber (Chinese Long) v2cmocuB807
CmoCh06G003300Cucumber (Chinese Long) v2cmocuB827
CmoCh06G003300Cucumber (Chinese Long) v2cmocuB825
CmoCh06G003300Melon (DHL92) v3.5.1cmomeB747
CmoCh06G003300Melon (DHL92) v3.5.1cmomeB764
CmoCh06G003300Watermelon (Charleston Gray)cmowcgB738
CmoCh06G003300Watermelon (Charleston Gray)cmowcgB740
CmoCh06G003300Watermelon (Charleston Gray)cmowcgB742
CmoCh06G003300Watermelon (97103) v1cmowmB797
CmoCh06G003300Watermelon (97103) v1cmowmB798
CmoCh06G003300Cucurbita pepo (Zucchini)cmocpeB775
CmoCh06G003300Cucurbita pepo (Zucchini)cmocpeB782
CmoCh06G003300Cucurbita pepo (Zucchini)cmocpeB783
CmoCh06G003300Cucurbita pepo (Zucchini)cmocpeB797
CmoCh06G003300Bottle gourd (USVL1VR-Ls)cmolsiB739
CmoCh06G003300Cucumber (Gy14) v2cgybcmoB536
CmoCh06G003300Melon (DHL92) v3.6.1cmomedB838
CmoCh06G003300Melon (DHL92) v3.6.1cmomedB868