Carg01023 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01023
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cucurbita_argyrosperma_scaffold_002 : 561992 .. 564631 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAATGCGAAGCCCACTAGCCTTCAAATCTCAGTTCCCGCCAGCGCCCTTTATCCATGGGTTCTGCAAGCAATCCGCCGCAACGACGGGATGAACTACGGCGCCTATGGCCGCTTCATCCAGCACGTACCGGCTTCCTCTTCGTCCGCCTCGGCAACTGCTTCGCGCTCGTCTTGTTCTATGTTCTGTCGCTCCCGAGAATTTCCTCGGATCGAAGGTCATCGCCTTCTAATCAAAATCTGGCAGCCTTGGAGATGCCTACAATGTGTTCGGTAACATTTCTCACGAGAACATTTTATCTTGGAATGCTTTTTTTTTTTATGAGTTACACTTTTCACAATATGCAATCTGATATGCTGAAGCTGTTTTTATCTTTGTTTAATTTGATATCGATGGATGCGAAGCCTGATAAGTTTAAGGTTACTTGTGTTTTGAAAGCGTTGGCGTTGTTGTTTTCTAATTTGATTTTGGCAATGGAAGTTCATTGTTTCATTCTTCGACGAGGGCTTGAGTCTCAGCTTTTTGTGTCTATGCTCTGATACTCGAGGTGTAATTAGCTGGTTAGCGAAAATTGTGTTTGATAGAATGCCTGCGAGAGATATTGTCTTCGAATGCGATGTTGGCTGAGTACTCTCAGGGTTGGTTTTATGTGGAATGCAAGGAACTATTTAAAGAGATGTTGAGTTTAGTGGAGTTGAGGCCTAATGCAGTGACTGCTGTCATTGTTTTACAAGCTTGTGCTCAGTCAAATTATCTCATTTTTGGAATGGAAGTTCGTTGATTCTGTTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAACTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAATGTGGGACACTCCCAATCCCAATAATCCTCAACACCTCCCCTCGAACAAAGCACACTATAAGCCTCCCCTGAGGCTTATGGAGCTCTCGAATAGCCTCCCCTTAATTGAGGCTCGACTCCTTTTTCTGGAGCCCTCGAACAAAGTACACCATTTGTTCGACACTTTAGTCACTTTTGACTACACTTTCGAGGCTCGCCATTCTTTGTTCGATATTTGAGGATTCTATTGGCATGGTTAGGTTTAGGGCATGGCTCTGATACCATGTTAGACGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAACTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAATGTGGGACACTCCCAATCCCAATAATCCTCAACAGATTCGTCAATGAACGTCAGGTTGAAGTGGATGTTTCATTATGTAATGCTGTTATTGGATTATATGCAAAAAGTGCGGTAGCTTGGATTATGTTTGGGAGTTGTTTGAAGAAATGCCTGAGAAGGATGAGGTCACATTGCGCGATGATATCGGACTACATGGTCCATGGTTTTGTTAACCAAGCAATAGATCTCTTTCCGAGTACTGAAAATGCCAGCATTGAGCAGATGTAATTGTTGAGGATCGTTGGAAGGGAATCCCACGTCGACTAATTAAGGAGATGATCATGGATTTATAAGTAAGAAATACGTCTCCGTTGGTACGAGGCCTTTTGAAAAAACCAAAAATAAAATCATGAGAGCTTATGCTATTCATCTTAGATCAATTTAGTCACTTGATTGATGTTTTTTCTATTCATTTTAGATCAATTTATGCTCAAAGTGGACAATACCATACCATTGTGGAGTGCCGTTGTTCCAAATAGTAATGCTGTGATTTTTGATCTGGTTCAGAGCAACCAATAAACTCGACTTGTAGATATATTTTGAGCAATGCAGTTGGATGGTTGCAGACCGAATACTATGACACTTGCGAGCGTTCTTCCCACCTTCTCACATTTTGCAACACCAAGGATGGGTAAGAAATTCATGCTTATGCCGTTAGAAACGGTTACGATGGGAATGTTTGTGTTGTCACTGCTATCATTGATTCTTATGCTAAGTCTGGTTACCTCCACAGGGCACGACTGGTTTGTGATCAATTTAAAGGTAGGAGTCTAATCATTTGGACAGCAATAATTTCAGCCTATGCTGCCAATGGAGGTGCTAACGTGGCTCTGAGTTTTTTTTATGAGATTCTGACAAATGGGATTCGGCCTGATTCAGTAGCCTTTACTCCAGTGTGTTCCTGTGCCCATTCAGGGGAGTTAGATGAAGCCTGGAAGATATTTAACGTCTTGTTACCAGAGTATGGAATTCAACCACTAATCGAGCACTATGCTTGCATGGTAGGAGTTCTTAGTCTAGCAGAAAAGTTCTCCGATGCTGTTGACTTTATTTCTAAAATGCCAATTGAACCCACTACAAAAGTTTGGGATGCTTTGCTCAATGGGGCTTCCGTTGCTGGTGATGTTGAGCTTGGAAAGTGCGTTTTTGATAGTCTGCTTGACACCGAGCCTGAAAATACAGGTAACAATATCATCATGGATAACTTATATTCACTGTTTGGAAGGTGGAAAAAATCTGGCTAG

mRNA sequence

ATGACGAATGCGAAGCCCACTAGCCTTCAAATCTCAGTTCCCGCCAGCGCCCTTTATCCATGGGTTCTGCAAGCAATCCGCCGCAACGACGGGATGAACTACGGCGCCTATGGCCGCTTCATCCAGCACGTACCGGCTTCCTCTTCGTCCGCCTCGGCAACTGCTTCGCGCTCGTCTTGTTCTATGTTCTGTCGCTCCCGAGAATTTCCTCGGATCGAAGGTCATCGCCTTCTAATCAAAATCTGGCAGCCTTGGAGATGCCTACAATGTGTTCGTTACACTTTTCACAATATGCAATCTGATATGCTGAAGCTGTTTTTATCTTTGTTTAATTTGATATCGATGGATGCGAAGCCTGATAAGTTTAAGTTCATTGTTTCATTCTTCGACGAGGGCTTGAGTCTCAGCTTTTTGTGTCTATGCTCTGATACTCGAGGTGTAATTAGCTGGTTAGCGAAAATTGTGTTTGATAGAATGCCTGCGAGAGATATTGTCTTCGAATGCGATAAATGCCTGAGAAGGATGAGGTCACATTGCGCGATGATATCGGACTACATGACCGAATACTATGACACTTGCGAGCGTTCTTCCCACCTTCTCACATTTTGCAACACCAAGGATGGAAACGGTTACGATGGGAATGTTTGTGTTGTCACTGCTATCATTGATTCTTATGCTAAGTCTGGTTACCTCCACAGGGCACGACTGGTTTGTGATCAATTTAAAGGTAGGAGTCTAATCATTTGGACAGCAATAATTTCAGCCTATGCTGCCAATGGAGGTGCTAACGTGGCTCTGAGTTTTTTTTATGAGATTCTGACAAATGGGATTCGGCCTGATTCAGTAGCCTTTACTCCAGTGTGTTCCTGTGCCCATTCAGGGGAGTTAGATGAAGCCTGGAAGATATTTAACGTCTTGTTACCAGAGTATGGAATTCAACCACTAATCGAGCACTATGCTTGCATGGTAGGAGTTCTTAGTCTAGCAGAAAAGTTCTCCGATGCTGTTGACTTTATTTCTAAAATGCCAATTGAACCCACTACAAAAGTTTGGGATGCTTTGCTCAATGGGGCTTCCGTTGCTGGTGATGTTGAGCTTGGAAAGTGCGTTTTTGATAGTCTGCTTGACACCGAGCCTGAAAATACAGGTAACAATATCATCATGGATAACTTATATTCACTGTTTGGAAGGTGGAAAAAATCTGGCTAG

Coding sequence (CDS)

ATGACGAATGCGAAGCCCACTAGCCTTCAAATCTCAGTTCCCGCCAGCGCCCTTTATCCATGGGTTCTGCAAGCAATCCGCCGCAACGACGGGATGAACTACGGCGCCTATGGCCGCTTCATCCAGCACGTACCGGCTTCCTCTTCGTCCGCCTCGGCAACTGCTTCGCGCTCGTCTTGTTCTATGTTCTGTCGCTCCCGAGAATTTCCTCGGATCGAAGGTCATCGCCTTCTAATCAAAATCTGGCAGCCTTGGAGATGCCTACAATGTGTTCGTTACACTTTTCACAATATGCAATCTGATATGCTGAAGCTGTTTTTATCTTTGTTTAATTTGATATCGATGGATGCGAAGCCTGATAAGTTTAAGTTCATTGTTTCATTCTTCGACGAGGGCTTGAGTCTCAGCTTTTTGTGTCTATGCTCTGATACTCGAGGTGTAATTAGCTGGTTAGCGAAAATTGTGTTTGATAGAATGCCTGCGAGAGATATTGTCTTCGAATGCGATAAATGCCTGAGAAGGATGAGGTCACATTGCGCGATGATATCGGACTACATGACCGAATACTATGACACTTGCGAGCGTTCTTCCCACCTTCTCACATTTTGCAACACCAAGGATGGAAACGGTTACGATGGGAATGTTTGTGTTGTCACTGCTATCATTGATTCTTATGCTAAGTCTGGTTACCTCCACAGGGCACGACTGGTTTGTGATCAATTTAAAGGTAGGAGTCTAATCATTTGGACAGCAATAATTTCAGCCTATGCTGCCAATGGAGGTGCTAACGTGGCTCTGAGTTTTTTTTATGAGATTCTGACAAATGGGATTCGGCCTGATTCAGTAGCCTTTACTCCAGTGTGTTCCTGTGCCCATTCAGGGGAGTTAGATGAAGCCTGGAAGATATTTAACGTCTTGTTACCAGAGTATGGAATTCAACCACTAATCGAGCACTATGCTTGCATGGTAGGAGTTCTTAGTCTAGCAGAAAAGTTCTCCGATGCTGTTGACTTTATTTCTAAAATGCCAATTGAACCCACTACAAAAGTTTGGGATGCTTTGCTCAATGGGGCTTCCGTTGCTGGTGATGTTGAGCTTGGAAAGTGCGTTTTTGATAGTCTGCTTGACACCGAGCCTGAAAATACAGGTAACAATATCATCATGGATAACTTATATTCACTGTTTGGAAGGTGGAAAAAATCTGGCTAG

Protein sequence

MTNAKPTSLQISVPASALYPWVLQAIRRNDGMNYGAYGRFIQHVPASSSSASATASRSSCSMFCRSREFPRIEGHRLLIKIWQPWRCLQCVRYTFHNMQSDMLKLFLSLFNLISMDAKPDKFKFIVSFFDEGLSLSFLCLCSDTRGVISWLAKIVFDRMPARDIVFECDKCLRRMRSHCAMISDYMTEYYDTCERSSHLLTFCNTKDGNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFFYEILTNGIRPDSVAFTPVCSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIMDNLYSLFGRWKKSG

Homology

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BLAST of Carg01023 vs. NCBI nr
Match: XP_022145703.1 (pentatricopeptide repeat-containing protein At2g37310 [Momordica charantia])

HSP 1 Score: 339.0 bits (868), Expect = 2.3e-89
Identity = 238/588 (40.48%), Postives = 279/588 (47.45%), Query Frame = 0


Query: 10  QISVPASALYPWVLQAIRRNDGMNYGAYGRFIQH----------------VPASSSSAXX 69
           QIS+PA A+ PW LQAIRR DGMNY AYGR IQH                +   S +   
Sbjct: 3   QISIPAGAVIPWALQAIRRADGMNYAAYGRLIQHCADRRFLRLGKQLHARLVLLSVTPDN 62

Query: 70  XXSRSSCSMFCRS---REFPRIEGHRLLIKIWQPWRCLQCVRYTFHNMQSDMLKLFLSLF 129
                  + + +S   R+   + G+     I+  W  L  + YT HNM SDMLKLF SL 
Sbjct: 63  FLGSKLIAFYSKSGSLRDAYNVFGNISHKNIFS-WNAL-FISYTLHNMHSDMLKLFSSLV 122

Query: 130 NLISMDAKPDKFKFIV-------SFFDEGLSLSFLC------LCSD---TRGVISW---- 189
           N  +MD KPDKF           SF D  L+    C      L SD      ++++    
Sbjct: 123 NSNAMDVKPDKFTITCVLKALASSFTDSILAKEVHCFVLRRGLESDIFVVNALVTYYSRC 182

Query: 190 ----LAKIVFDRMPARDIVF---------------ECDKCLRRMRSHCAMISDYMT--EY 249
               LA+IVF RMP RDIV                EC +  + M S   +  + +T    
Sbjct: 183 EEVVLARIVFGRMPERDIVSWNAMVAGFSQGGFYEECKELFKEMLSSVELKPNALTAVSV 242

Query: 250 YDTCERSSHLL------------------TFCNTKDG----------------------- 309
              C +S+ L+                  + CN   G                       
Sbjct: 243 LQACAQSNDLIFGMEVHRFVNESQIEMDVSLCNAVIGLYAKCGSLDYARELXXXXXXXXX 302

Query: 310 ------------------------------------------------------------ 369
                                                                       
Sbjct: 303 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSH 362

Query: 370 ----------------------------------NGYDGNVCVVTAIIDSYAKSGYLHRA 402
                                             NGY+GN+ V TAIIDSYAKSGYLH A
Sbjct: 363 GCRPNAVTLASVLPVFSHFSTLKGGKEIHAYAVRNGYNGNIYVATAIIDSYAKSGYLHGA 422

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BLAST of Carg01023 vs. NCBI nr
Match: XP_023539538.1 (pentatricopeptide repeat-containing protein At2g37310-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322.0 bits (824), Expect = 2.9e-84
Identity = 208/407 (51.11%), Postives = 235/407 (57.74%), Query Frame = 0


Query: 1   MTNAKPTSLQISVPASALYPWVLQAIRRNDGMNYGAYGRFIQHVPASSSSAXXXXSRSSC 60
           MTNAKPTSLQISVPASALYPW LQAIRR+DGMNYGAYGRFIQ  P SSS  XXXX RSSC
Sbjct: 1   MTNAKPTSLQISVPASALYPWSLQAIRRDDGMNYGAYGRFIQLAPTSSSXXXXXXXRSSC 60

Query: 61  SMFCRSREFPRIEGHRLLIKIWQPWRCLQCVRYTFHNMQSDMLKLFLSLFNLISMDAKPD 120
           SMFCRSREFPRIE     I  W      +C +  F+    ++ K  LSL  L     +P+
Sbjct: 61  SMFCRSREFPRIEECLREILSWNA-MVAECSQGWFYGECKELYKAMLSLVEL-----RPN 120

Query: 121 KFKFIVSFFDEGLSLSFLCLCSDTRGVISWLAKIVFDRMPARDIVFECDKCLRRMRSHCA 180
               ++        L++L L  +  G + ++ ++ F+ MP +D V           ++ A
Sbjct: 121 ALTAVI-VLQACAQLNYLILGMEC-GSLDYVWEL-FEEMPEKDEV-----------TYGA 180

Query: 181 MISDYMT---------EYYDT-----CERSSHLLT--------FCNTKDG---------N 240
           MISDYM           Y  +     C  ++  L         F   KDG         N
Sbjct: 181 MISDYMVHEQPISWSCRYISSNAVHGCRPNTVTLASVLPIFSHFSTLKDGKEIHAYAVRN 240

Query: 241 GYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFF 300
            YDGNVCVVTAIIDSYAKSGY HRARLVCDQFK                           
Sbjct: 241 CYDGNVCVVTAIIDSYAKSGYFHRARLVCDQFK--------------------------- 300

Query: 301 YEILTNGIRPDSVAFTPVCSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLA 360
                                   GELDEAWKIFNVLLPEYGIQPL+EHYACMVGVLS A
Sbjct: 301 ------------------------GELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSPA 336

Query: 361 EKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLD 377
           EK SDAVDFISKMPIEPTTKVW ALLNGASVAGDVELGKCVFDSLL+
Sbjct: 361 EKLSDAVDFISKMPIEPTTKVWGALLNGASVAGDVELGKCVFDSLLE 336

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BLAST of Carg01023 vs. NCBI nr
Match: XP_022934145.1 (pentatricopeptide repeat-containing protein At2g37310 [Cucurbita moschata] >XP_022934146.1 pentatricopeptide repeat-containing protein At2g37310 [Cucurbita moschata] >XP_022934147.1 pentatricopeptide repeat-containing protein At2g37310 [Cucurbita moschata] >XP_022934148.1 pentatricopeptide repeat-containing protein At2g37310 [Cucurbita moschata])

HSP 1 Score: 312.4 bits (799), Expect = 2.3e-81
Identity = 156/194 (80.41%), Postives = 165/194 (85.05%), Query Frame = 0


Query: 209 NGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSF 268
           N YDGN+ V TAIIDSYAKSGYL  AR V DQ K RSLIIWTAIISAYAA+G AN  LS 
Sbjct: 371 NAYDGNIYVATAIIDSYAKSGYLQGARQVFDQLKRRSLIIWTAIISAYAAHGDANATLSL 430

Query: 269 FYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLS 328
           FYE+LTNGIRPD V FT V  +CAHSGELDEAWKIFNVLLPE+GIQPL+EHYACMVGVLS
Sbjct: 431 FYEMLTNGIRPDPVTFTSVLVACAHSGELDEAWKIFNVLLPEFGIQPLVEHYACMVGVLS 490

Query: 329 LAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNII 388
            A K SDAV+FISKMPIEPT KVW ALLNGASVAGDVELGK VFD LLD EPENTGN II
Sbjct: 491 RAGKLSDAVEFISKMPIEPTAKVWGALLNGASVAGDVELGKYVFDRLLDIEPENTGNYII 550

Query: 389 MDNLYSLFGRWKKS 402
           M NLYS FGRWK++
Sbjct: 551 MANLYSQFGRWKEA 564

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BLAST of Carg01023 vs. NCBI nr
Match: XP_023526289.1 (pentatricopeptide repeat-containing protein At2g37310 [Cucurbita pepo subsp. pepo] >XP_023526290.1 pentatricopeptide repeat-containing protein At2g37310 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.8 bits (795), Expect = 6.6e-81
Identity = 155/194 (79.90%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 209 NGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSF 268
           N YDGN+ V TAIIDSYAKSGYL  AR V DQ K RSLIIWTAIISAYAA+G AN  LS 
Sbjct: 371 NAYDGNIYVATAIIDSYAKSGYLQGARQVFDQLKRRSLIIWTAIISAYAAHGDANATLSL 430

Query: 269 FYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLS 328
           FYE+LTNGIRPD V FT V  +CAHSGELDEAWKIFNVLLPE+GIQPL+EHYACMVGVLS
Sbjct: 431 FYEMLTNGIRPDPVTFTSVLVACAHSGELDEAWKIFNVLLPEFGIQPLVEHYACMVGVLS 490

Query: 329 LAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNII 388
            A K SDAV+FISKMPIEPT KVW ALLNGASVAGDVELGK VFD L D EPENTGN II
Sbjct: 491 RAGKLSDAVEFISKMPIEPTAKVWGALLNGASVAGDVELGKYVFDRLFDIEPENTGNYII 550

Query: 389 MDNLYSLFGRWKKS 402
           M NLYS FGRWK++
Sbjct: 551 MANLYSQFGRWKEA 564

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BLAST of Carg01023 vs. NCBI nr
Match: XP_022983956.1 (pentatricopeptide repeat-containing protein At2g37310 [Cucurbita maxima] >XP_022983957.1 pentatricopeptide repeat-containing protein At2g37310 [Cucurbita maxima])

HSP 1 Score: 306.6 bits (784), Expect = 1.2e-79
Identity = 154/194 (79.38%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 209 NGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSF 268
           N YDGN+ V TAIIDSYAKSGYL  AR V DQ K RSLIIWTAIISAYAA+G AN  LS 
Sbjct: 371 NAYDGNIYVATAIIDSYAKSGYLQGARQVFDQSKRRSLIIWTAIISAYAAHGDANATLSL 430

Query: 269 FYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLS 328
           FYE+LTNGIRPD V FT V  +CAHSGEL+EAWKIFNVLLPE+GIQPL+EHYACMVGVLS
Sbjct: 431 FYEMLTNGIRPDPVTFTSVLVACAHSGELNEAWKIFNVLLPEFGIQPLVEHYACMVGVLS 490

Query: 329 LAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNII 388
            A K SDAV+FISKMPIEPT KVW ALLNGASVAGDVELGK VFD LLD EPENTGN II
Sbjct: 491 RAGKLSDAVEFISKMPIEPTAKVWGALLNGASVAGDVELGKYVFDRLLDIEPENTGNYII 550

Query: 389 MDNLYSLFGRWKKS 402
           M NLYS FG WK++
Sbjct: 551 MANLYSQFGWWKEA 564

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BLAST of Carg01023 vs. TAIR10
Match: AT2G37310.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 182.2 bits (461), Expect = 6.4e-46
Identity = 96/194 (49.48%), Postives = 122/194 (62.89%), Query Frame = 0


Query: 209 NGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSF 268
           NG D N+ V T+IID+YAK G+L  A+ V D  K RSLI WTAII+AYA +G ++ A S 
Sbjct: 395 NGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSL 454

Query: 269 FYEILTNGIRPDSV-AFTPVCSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLS 328
           F ++   G +PD V                         L +Y I+P +EHYACMV VLS
Sbjct: 455 FDQMQCLGTKPDDVXXXXXXXXXXXXXXXXXXXXXXXXXLTKYDIEPGVEHYACMVSVLS 514

Query: 329 LAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNII 388
            A K SDA++FISKMPI+P  KVW ALLNGASV GD+E+ +   D L + EPENTGN  I
Sbjct: 515 RAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPENTGNYTI 574

Query: 389 MDNLYSLFGRWKKS 402
           M NLY+  GRW+++
Sbjct: 575 MANLYTQAGRWEEA 588

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BLAST of Carg01023 vs. TAIR10
Match: AT3G23330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 154.5 bits (389), Expect = 1.4e-37
Identity = 73/192 (38.02%), Postives = 115/192 (59.90%), Query Frame = 0


Query: 210 GYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFF 269
           G+  N+ + +A++D Y+K G +  AR + D+      + WTAII  +A +G  + A+S F
Sbjct: 373 GFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLF 432

Query: 270 YEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSL 329
            E+   G++P+ VAF  V  +C+H G +DEAW  FN +   YG+   +EHYA +  +L  
Sbjct: 433 EEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGR 492

Query: 330 AEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIM 389
           A K  +A +FISKM +EPT  VW  LL+  SV  ++EL + V + +   + EN G  ++M
Sbjct: 493 AGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLM 552

Query: 390 DNLYSLFGRWKK 401
            N+Y+  GRWK+
Sbjct: 553 CNMYASNGRWKE 564

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BLAST of Carg01023 vs. TAIR10
Match: AT1G20230.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 154.1 bits (388), Expect = 1.9e-37
Identity = 68/186 (36.56%), Postives = 113/186 (60.75%), Query Frame = 0


Query: 214 NVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFFYEIL 273
           NV V +A+ID YAK G ++ +++V +    ++L+ W ++++ ++ +G A   +S F  ++
Sbjct: 422 NVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLM 481

Query: 274 TNGIRPDSVAFTPVCS-CAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLAEKF 333
              ++PD ++FT + S C   G  DE WK F ++  EYGI+P +EHY+CMV +L  A K 
Sbjct: 482 RTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKL 541

Query: 334 SDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIMDNLY 393
            +A D I +MP EP + VW ALLN   +  +V+L +   + L   EPEN G  +++ N+Y
Sbjct: 542 QEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIY 601

Query: 394 SLFGRW 399
           +  G W
Sbjct: 602 AAKGMW 607

[Close]

BLAST of Carg01023 vs. TAIR10
Match: AT3G49142.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 151.8 bits (382), Expect = 9.3e-37
Identity = 73/188 (38.83%), Postives = 111/188 (59.04%), Query Frame = 0


Query: 214 NVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFFYEIL 273
           N+ +  A+ID YAK G L +AR V +  K R ++ WTA+ISAY  +G    A++ F ++ 
Sbjct: 343 NLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQ 402

Query: 274 TNGIRPDSVAF-TPVCSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLAEKF 333
            +G+ PDS+AF T + +C+H+G L+E    F ++   Y I P +EH ACMV +L  A K 
Sbjct: 403 DSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKV 462

Query: 334 SDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIMDNLY 393
            +A  FI  M +EP  +VW ALL    V  D ++G    D L    PE +G  +++ N+Y
Sbjct: 463 KEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIY 522

Query: 394 SLFGRWKK 401
           +  GRW++
Sbjct: 523 AKAGRWEE 530

[Close]

BLAST of Carg01023 vs. TAIR10
Match: AT5G56310.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-36
Identity = 75/200 (37.50%), Postives = 116/200 (58.00%), Query Frame = 0


Query: 203 CNTKDGNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGA 262
           C+  D  G +  V +  A+ID YAKSG + +A  V +    R+++ WT II+  A +G  
Sbjct: 273 CSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHG 332

Query: 263 NVALSFFYEILTNGIRPDSVAFTPVCS-CAHSGELDEAWKIFNVLLPEYGIQPLIEHYAC 322
             AL+ F  ++  G+RP+ V F  + S C+H G +D   ++FN +  +YGI P IEHY C
Sbjct: 333 AEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGC 392

Query: 323 MVGVLSLAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPEN 382
           M+ +L  A K  +A + I  MP +    +W +LL  ++V  D+ELG+     L+  EP N
Sbjct: 393 MIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNN 452

Query: 383 TGNNIIMDNLYSLFGRWKKS 402
           +GN +++ NLYS  GRW +S
Sbjct: 453 SGNYMLLANLYSNLGRWDES 472

[Close]

BLAST of Carg01023 vs. Swiss-Prot
Match: sp|Q9ZUT5|PP191_ARATH (Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E49 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-44
Identity = 96/194 (49.48%), Postives = 122/194 (62.89%), Query Frame = 0


Query: 209 NGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSF 268
           NG D N+ V T+IID+YAK G+L  A+ V D  K RSLI WTAII+AYA +G ++ A S 
Sbjct: 395 NGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSL 454

Query: 269 FYEILTNGIRPDSV-AFTPVCSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLS 328
           F ++   G +PD V                         L +Y I+P +EHYACMV VLS
Sbjct: 455 FDQMQCLGTKPDDVXXXXXXXXXXXXXXXXXXXXXXXXXLTKYDIEPGVEHYACMVSVLS 514

Query: 329 LAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNII 388
            A K SDA++FISKMPI+P  KVW ALLNGASV GD+E+ +   D L + EPENTGN  I
Sbjct: 515 RAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPENTGNYTI 574

Query: 389 MDNLYSLFGRWKKS 402
           M NLY+  GRW+++
Sbjct: 575 MANLYTQAGRWEEA 588

[Close]

BLAST of Carg01023 vs. Swiss-Prot
Match: sp|Q9LW63|PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.6e-36
Identity = 73/192 (38.02%), Postives = 115/192 (59.90%), Query Frame = 0


Query: 210 GYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFF 269
           G+  N+ + +A++D Y+K G +  AR + D+      + WTAII  +A +G  + A+S F
Sbjct: 373 GFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLF 432

Query: 270 YEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSL 329
            E+   G++P+ VAF  V  +C+H G +DEAW  FN +   YG+   +EHYA +  +L  
Sbjct: 433 EEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGR 492

Query: 330 AEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIM 389
           A K  +A +FISKM +EPT  VW  LL+  SV  ++EL + V + +   + EN G  ++M
Sbjct: 493 AGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLM 552

Query: 390 DNLYSLFGRWKK 401
            N+Y+  GRWK+
Sbjct: 553 CNMYASNGRWKE 564

[Close]

BLAST of Carg01023 vs. Swiss-Prot
Match: sp|Q9LNU6|PPR53_ARATH (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 154.1 bits (388), Expect = 3.4e-36
Identity = 68/186 (36.56%), Postives = 113/186 (60.75%), Query Frame = 0


Query: 214 NVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFFYEIL 273
           NV V +A+ID YAK G ++ +++V +    ++L+ W ++++ ++ +G A   +S F  ++
Sbjct: 422 NVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLM 481

Query: 274 TNGIRPDSVAFTPVCS-CAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLAEKF 333
              ++PD ++FT + S C   G  DE WK F ++  EYGI+P +EHY+CMV +L  A K 
Sbjct: 482 RTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKL 541

Query: 334 SDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIMDNLY 393
            +A D I +MP EP + VW ALLN   +  +V+L +   + L   EPEN G  +++ N+Y
Sbjct: 542 QEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIY 601

Query: 394 SLFGRW 399
           +  G W
Sbjct: 602 AAKGMW 607

[Close]

BLAST of Carg01023 vs. Swiss-Prot
Match: sp|P0C899|PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-35
Identity = 73/188 (38.83%), Postives = 111/188 (59.04%), Query Frame = 0


Query: 214 NVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSFFYEIL 273
           N+ +  A+ID YAK G L +AR V +  K R ++ WTA+ISAY  +G    A++ F ++ 
Sbjct: 343 NLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQ 402

Query: 274 TNGIRPDSVAF-TPVCSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLSLAEKF 333
            +G+ PDS+AF T + +C+H+G L+E    F ++   Y I P +EH ACMV +L  A K 
Sbjct: 403 DSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKV 462

Query: 334 SDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNIIMDNLY 393
            +A  FI  M +EP  +VW ALL    V  D ++G    D L    PE +G  +++ N+Y
Sbjct: 463 KEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIY 522

Query: 394 SLFGRWKK 401
           +  GRW++
Sbjct: 523 AKAGRWEE 530

[Close]

BLAST of Carg01023 vs. Swiss-Prot
Match: sp|Q9FMA1|PP433_ARATH (Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E13 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.2e-35
Identity = 75/200 (37.50%), Postives = 116/200 (58.00%), Query Frame = 0


Query: 203 CNTKDGNGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGA 262
           C+  D  G +  V +  A+ID YAKSG + +A  V +    R+++ WT II+  A +G  
Sbjct: 273 CSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHG 332

Query: 263 NVALSFFYEILTNGIRPDSVAFTPVCS-CAHSGELDEAWKIFNVLLPEYGIQPLIEHYAC 322
             AL+ F  ++  G+RP+ V F  + S C+H G +D   ++FN +  +YGI P IEHY C
Sbjct: 333 AEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGC 392

Query: 323 MVGVLSLAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPEN 382
           M+ +L  A K  +A + I  MP +    +W +LL  ++V  D+ELG+     L+  EP N
Sbjct: 393 MIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNN 452

Query: 383 TGNNIIMDNLYSLFGRWKKS 402
           +GN +++ NLYS  GRW +S
Sbjct: 453 SGNYMLLANLYSNLGRWDES 472

[Close]

BLAST of Carg01023 vs. TrEMBL
Match: tr|A0A0A0LFN1|A0A0A0LFN1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736590 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 3.1e-79
Identity = 150/192 (78.12%), Postives = 162/192 (84.38%), Query Frame = 0


Query: 209 NGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSF 268
           N YD N+ V TAIIDSYAK GYLH A+LV DQ KGRSLI WT+IISAYA +G ANVALS 
Sbjct: 371 NTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSL 430

Query: 269 FYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLS 328
           FYE+LTNGI+PD V FT V  +CAHSGELDEAWKIFNVLLPEYGIQPL+EHYACMVGVLS
Sbjct: 431 FYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLS 490

Query: 329 LAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNII 388
            A K SDAV+FISKMP+EPT KVW ALLNGASVAGDVELGK VFD L + EPENTGN +I
Sbjct: 491 RAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVI 550

Query: 389 MDNLYSLFGRWK 400
           M NLYS  GRWK
Sbjct: 551 MANLYSQSGRWK 562

[Close]

BLAST of Carg01023 vs. TrEMBL
Match: tr|A0A1S4DUQ6|A0A1S4DUQ6_CUCME (pentatricopeptide repeat-containing protein At2g37310 OS=Cucumis melo OX=3656 GN=LOC107990300 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.9e-76
Identity = 145/194 (74.74%), Postives = 160/194 (82.47%), Query Frame = 0


Query: 209 NGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSF 268
           N YDGN+ V TAIIDSYAK GYL  AR V DQ KGRSLI WT+IISAYA +G ANVALS 
Sbjct: 371 NTYDGNIFVATAIIDSYAKCGYLQGARQVFDQLKGRSLIAWTSIISAYAVHGDANVALSL 430

Query: 269 FYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLS 328
           FYE+LT GI+PD V FT V  +CAHSGELDEAWKIFN+LLP+YGIQPL+EHYACMVGVLS
Sbjct: 431 FYEMLTYGIQPDQVTFTSVLAACAHSGELDEAWKIFNILLPDYGIQPLVEHYACMVGVLS 490

Query: 329 LAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNII 388
            A K SDAV+FISKMP+EP  KVW ALLNGASVAGDVELGK VFD L + EP NTGN +I
Sbjct: 491 RAGKLSDAVEFISKMPLEPNAKVWGALLNGASVAGDVELGKYVFDRLFEIEPGNTGNYVI 550

Query: 389 MDNLYSLFGRWKKS 402
           M NLYS  GRWK++
Sbjct: 551 MANLYSQSGRWKEA 564

[Close]

BLAST of Carg01023 vs. TrEMBL
Match: tr|A0A2N9J006|A0A2N9J006_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57776 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 7.2e-68
Identity = 127/194 (65.46%), Postives = 156/194 (80.41%), Query Frame = 0


Query: 209 NGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSF 268
           N YD N+ V TAIID+YAKSG+LH A+ + DQ KG+SLIIWTAIISAYAA+G AN AL  
Sbjct: 402 NSYDSNIYVATAIIDTYAKSGFLHGAKRIFDQSKGKSLIIWTAIISAYAAHGDANTALGL 461

Query: 269 FYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLS 328
           F ++L +GIRPD + FT V  +CAHSG ++EAWKIF+ +  +YGIQP +EHYACMVGVLS
Sbjct: 462 FNDMLNDGIRPDPITFTAVLAACAHSGVVEEAWKIFDAMFMKYGIQPSVEHYACMVGVLS 521

Query: 329 LAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNII 388
            A + S+AV+F+SKMPIEP+ KVW ALLNGA V+GDVELGK V D+L + EPENTGN II
Sbjct: 522 RAGRLSEAVEFVSKMPIEPSAKVWGALLNGACVSGDVELGKFVCDNLFEIEPENTGNYII 581

Query: 389 MDNLYSLFGRWKKS 402
           M NLYS  GRW+++
Sbjct: 582 MANLYSQAGRWEEA 595

[Close]

BLAST of Carg01023 vs. TrEMBL
Match: tr|A0A2N9FCS3|A0A2N9FCS3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12563 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 2.1e-67
Identity = 126/194 (64.95%), Postives = 156/194 (80.41%), Query Frame = 0


Query: 209 NGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSF 268
           N YD N+ V TAIID+YAKSG+LH A+ + DQ KG+SLIIWTAIISAYAA+G AN AL  
Sbjct: 335 NSYDSNIYVATAIIDTYAKSGFLHGAKRIFDQSKGKSLIIWTAIISAYAAHGDANTALGL 394

Query: 269 FYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLS 328
           F ++L +GIRPD + FT V  +CAHSG ++EAWKIF+ +  +YGIQP ++HYACMVGVLS
Sbjct: 395 FNDMLNDGIRPDPITFTAVLAACAHSGVVEEAWKIFDAMFMKYGIQPSVKHYACMVGVLS 454

Query: 329 LAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNII 388
            A + S+AV+F+SKMPIEP+ KVW ALLNGA V+GDVELGK V D+L + EPENTGN II
Sbjct: 455 RAGRLSEAVEFVSKMPIEPSAKVWGALLNGACVSGDVELGKFVCDNLFEIEPENTGNYII 514

Query: 389 MDNLYSLFGRWKKS 402
           M NLYS  GRW+++
Sbjct: 515 MANLYSQAGRWEEA 528

[Close]

BLAST of Carg01023 vs. TrEMBL
Match: tr|M5W6C8|M5W6C8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa001024mg PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.6e-67
Identity = 125/194 (64.43%), Postives = 156/194 (80.41%), Query Frame = 0


Query: 209 NGYDGNVCVVTAIIDSYAKSGYLHRARLVCDQFKGRSLIIWTAIISAYAANGGANVALSF 268
           N +D N+ V TAIID+YAKSG +H A+ V +Q +G+SLIIWTAIISAYA++G A++AL  
Sbjct: 402 NNFDANIYVATAIIDTYAKSGLVHGAQQVFNQSRGKSLIIWTAIISAYASHGDADMALGL 461

Query: 269 FYEILTNGIRPDSVAFTPV-CSCAHSGELDEAWKIFNVLLPEYGIQPLIEHYACMVGVLS 328
           FYE+L NGI+PD V FT V  +CAHSG +DE+WKIF+ + P+YGIQP +EHYACMVGVLS
Sbjct: 462 FYEMLNNGIQPDQVTFTAVLTACAHSGVVDESWKIFDAMFPKYGIQPSVEHYACMVGVLS 521

Query: 329 LAEKFSDAVDFISKMPIEPTTKVWDALLNGASVAGDVELGKCVFDSLLDTEPENTGNNII 388
            A + S+A+DFI KMP+EP+ KVW ALLNGASV+GDVELGK V D L   EP+NTGN II
Sbjct: 522 RAGRLSEAIDFIHKMPVEPSAKVWGALLNGASVSGDVELGKFVCDRLFQIEPDNTGNYII 581

Query: 389 MDNLYSLFGRWKKS 402
           M NLYS  GRW+++
Sbjct: 582 MANLYSQAGRWEEA 595

The following BLAST results are available for this feature:

BLAST of Carg01023 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145703.1	2.3e-89	40.48	pentatricopeptide repeat-containing protein At2g37310 [Momordica charantia]	[more]
XP_023539538.1	2.9e-84	51.11	pentatricopeptide repeat-containing protein At2g37310-like [Cucurbita pepo subsp...	[more]
XP_022934145.1	2.3e-81	80.41	pentatricopeptide repeat-containing protein At2g37310 [Cucurbita moschata] >XP_0...	[more]
XP_023526289.1	6.6e-81	79.90	pentatricopeptide repeat-containing protein At2g37310 [Cucurbita pepo subsp. pep...	[more]
XP_022983956.1	1.2e-79	79.38	pentatricopeptide repeat-containing protein At2g37310 [Cucurbita maxima] >XP_022...	[more]

BLAST of Carg01023 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37310.1	6.4e-46	49.48	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G23330.1	1.4e-37	38.02	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G20230.1	1.9e-37	36.56	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G49142.1	9.3e-37	38.83	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G56310.1	1.2e-36	37.50	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Carg01023 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZUT5\|PP191_ARATH	1.2e-44	49.48	Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9LW63\|PP251_ARATH	2.6e-36	38.02	Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th...	[more]
sp\|Q9LNU6\|PPR53_ARATH	3.4e-36	36.56	Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX...	[more]
sp\|P0C899\|PP271_ARATH	1.7e-35	38.83	Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis th...	[more]
sp\|Q9FMA1\|PP433_ARATH	2.2e-35	37.50	Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg01023 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LFN1\|A0A0A0LFN1_CUCSA	3.1e-79	78.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736590 PE=4 SV=1	[more]
tr\|A0A1S4DUQ6\|A0A1S4DUQ6_CUCME	1.9e-76	74.74	pentatricopeptide repeat-containing protein At2g37310 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A2N9J006\|A0A2N9J006_FAGSY	7.2e-68	65.46	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57776 PE=4 SV=1	[more]
tr\|A0A2N9FCS3\|A0A2N9FCS3_FAGSY	2.1e-67	64.95	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12563 PE=4 SV=1	[more]
tr\|M5W6C8\|M5W6C8_PRUPE	3.6e-67	64.43	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa001024mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01023-RA	Carg01023-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 290..399 e-value: 9.0E-14 score: 53.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 135..289 e-value: 2.6E-12 score: 48.4
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 218..243 e-value: 0.5 score: 10.6 coord: 248..277 e-value: 0.0071 score: 16.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 248..281 e-value: 0.0023 score: 16.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 347..381 score: 5.952
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 245..279 score: 9.471
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 214..244 score: 6.106
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 287..314 score: 5.437
None	No IPR available	PANTHER	PTHR24015:SF38	SUBFAMILY NOT NAMED	coord: 213..400
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 213..400

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01023	CmaCh06G003340	Cucurbita maxima (Rimu)	carcmaB0216
Carg01023	CmoCh06G003300	Cucurbita moschata (Rifu)	carcmoB0227
Carg01023	Cp4.1LG08g11380	Cucurbita pepo (Zucchini)	carcpeB0233
Carg01023	Cla97C10G203950	Watermelon (97103) v2	carwmbB0159
Carg01023	Bhi11G001836	Wax gourd	carwgoB0196

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg01023	Carg12580	Silver-seed gourd	carcarB200

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01023	Silver-seed gourd	carcarB184
Carg01023	Silver-seed gourd	carcarB185
Carg01023	Silver-seed gourd	carcarB193
Carg01023	Silver-seed gourd	carcarB199
Carg01023	Cucumber (Gy14) v2	carcgybB0170
Carg01023	Cucumber (Gy14) v2	carcgybB0173
Carg01023	Cucumber (Gy14) v1	carcgyB0187
Carg01023	Cucumber (Gy14) v1	carcgyB0196
Carg01023	Cucumber (Gy14) v1	carcgyB0193
Carg01023	Cucurbita maxima (Rimu)	carcmaB0203
Carg01023	Cucurbita maxima (Rimu)	carcmaB0211
Carg01023	Cucurbita maxima (Rimu)	carcmaB0215
Carg01023	Cucurbita maxima (Rimu)	carcmaB0217
Carg01023	Cucurbita moschata (Rifu)	carcmoB0214
Carg01023	Cucurbita moschata (Rifu)	carcmoB0222
Carg01023	Cucurbita moschata (Rifu)	carcmoB0225
Carg01023	Cucurbita moschata (Rifu)	carcmoB0226
Carg01023	Cucurbita moschata (Rifu)	carcmoB0228
Carg01023	Cucurbita pepo (Zucchini)	carcpeB0220
Carg01023	Cucurbita pepo (Zucchini)	carcpeB0224
Carg01023	Cucurbita pepo (Zucchini)	carcpeB0227
Carg01023	Cucurbita pepo (Zucchini)	carcpeB0230
Carg01023	Wild cucumber (PI 183967)	carcpiB0181
Carg01023	Wild cucumber (PI 183967)	carcpiB0184
Carg01023	Wild cucumber (PI 183967)	carcpiB0185
Carg01023	Cucumber (Chinese Long) v2	carcuB0175
Carg01023	Cucumber (Chinese Long) v2	carcuB0178
Carg01023	Cucumber (Chinese Long) v2	carcuB0179
Carg01023	Cucumber (Chinese Long) v3	carcucB0181
Carg01023	Cucumber (Chinese Long) v3	carcucB0184
Carg01023	Cucumber (Chinese Long) v3	carcucB0185
Carg01023	Bottle gourd (USVL1VR-Ls)	carlsiB138
Carg01023	Bottle gourd (USVL1VR-Ls)	carlsiB141
Carg01023	Bottle gourd (USVL1VR-Ls)	carlsiB145
Carg01023	Melon (DHL92) v3.5.1	carmeB0156
Carg01023	Melon (DHL92) v3.5.1	carmeB0161
Carg01023	Melon (DHL92) v3.5.1	carmeB0166
Carg01023	Melon (DHL92) v3.6.1	carmedB0159
Carg01023	Melon (DHL92) v3.6.1	carmedB0162
Carg01023	Melon (DHL92) v3.6.1	carmedB0167
Carg01023	Watermelon (Charleston Gray)	carwcgB0147
Carg01023	Watermelon (Charleston Gray)	carwcgB0152
Carg01023	Watermelon (Charleston Gray)	carwcgB0153
Carg01023	Watermelon (Charleston Gray)	carwcgB0155
Carg01023	Watermelon (97103) v1	carwmB0146
Carg01023	Watermelon (97103) v1	carwmB0151
Carg01023	Watermelon (97103) v1	carwmB0152
Carg01023	Watermelon (97103) v2	carwmbB0164
Carg01023	Watermelon (97103) v2	carwmbB0166
Carg01023	Watermelon (97103) v2	carwmbB0167
Carg01023	Wax gourd	carwgoB0211
Carg01023	Wax gourd	carwgoB0210