CmoCh06G000590 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G000590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Folic acid and derivative biosynthetic process isoform 3
Location	Cmo_Chr06 : 367163 .. 367688 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCTAACTACTGTAATTGATACCCATAATGAACCTAACTCAATATATCAAATTCAGTCAAAATCAATAAACAACACTAAATTTACGATCATTTTTTACCCATATCGTAACATCGTAAGTAGTTCAAAAATAACGAAACAGGGGAAGGTGTTGAAGGAGCATCCAACAATGAAAATGTTTGTGTCAATACCAGGAACAAAGTTCAAAGATGAAAGCATCTGTGAGGTTGCCTACAAGCACAAAATAAAGGTCAAATTTGTCCACCTGATAGGGGAAAAGGATTGGTTGAAGCTTCCTTCTAAAGAACTTGCTTCTACCTTTCATGAGCCTCTCATCATAAAGGCATCCTCAAGGTCATACTGTCCCTAGGTTAGACGAAGTAGCCACTAAGAAGCTCCGCTGCTGGGTCGATGCGATAGTTTCGAGTCATGATCATGTTGGAGATGGAGAAGCAAAGGAGAATATCACTCAGAAAGTGGCTGAGAACATTGAGAATGAGCTCGAGAATAGTAATATAACTTAA

mRNA sequence

ATGAACCTAACTACTGTAATTGATACCCATAATGAACCTAACTCAATATATCAAATTCAGTCAAAATCAATAAACAACACTAAATTTACGATCATTTTTTACCCATATCGTAACATCGTAAGTAGTTCAAAAATAACGAAACAGGGGAAGGTGTTGAAGGAGCATCCAACAATGAAAATGTTTGTGTCAATACCAGGAACAAAGTTCAAAGATGAAAGCATCTGTGAGGTTGCCTACAAGCACAAAATAAAGGTCAAATTTGTCCACCTGATAGGGGAAAAGGATTGGTTGAAGCTTCCTTCTAAAGAACTTGCTTCTACCTTTCATGAGCCTCTCATCATAAAGGCATCCTCAAGGTTAGACGAAGTAGCCACTAAGAAGCTCCGCTGCTGGGTCGATGCGATAGTTTCGAGTCATGATCATGTTGGAGATGGAGAAGCAAAGGAGAATATCACTCAGAAAGTGGCTGAGAACATTGAGAATGAGCTCGAGAATAGTAATATAACTTAA

Coding sequence (CDS)

ATGAACCTAACTACTGTAATTGATACCCATAATGAACCTAACTCAATATATCAAATTCAGTCAAAATCAATAAACAACACTAAATTTACGATCATTTTTTACCCATATCGTAACATCGTAAGTAGTTCAAAAATAACGAAACAGGGGAAGGTGTTGAAGGAGCATCCAACAATGAAAATGTTTGTGTCAATACCAGGAACAAAGTTCAAAGATGAAAGCATCTGTGAGGTTGCCTACAAGCACAAAATAAAGGTCAAATTTGTCCACCTGATAGGGGAAAAGGATTGGTTGAAGCTTCCTTCTAAAGAACTTGCTTCTACCTTTCATGAGCCTCTCATCATAAAGGCATCCTCAAGGTTAGACGAAGTAGCCACTAAGAAGCTCCGCTGCTGGGTCGATGCGATAGTTTCGAGTCATGATCATGTTGGAGATGGAGAAGCAAAGGAGAATATCACTCAGAAAGTGGCTGAGAACATTGAGAATGAGCTCGAGAATAGTAATATAACTTAA

Homology

[Close]

BLAST of CmoCh06G000590 vs. TrEMBL
Match: A0A0A0LH35_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G813300 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-43
Identity = 91/121 (75.21%), Postives = 100/121 (82.64%), Query Frame = 1


Query: 48  QGKVLKEHPTMKMFVSIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPSKELAST 107
           QGKVLKEHP MKMFVSI GTKFKDESICEVAYKHKIKVK VH IGEKDWLKLPS++LAS 
Sbjct: 123 QGKVLKEHPPMKMFVSISGTKFKDESICEVAYKHKIKVKSVHFIGEKDWLKLPSQQLASV 182

Query: 108 FHEPLIIK-----ASSRLDEVATKKLRCWVDAIVSSHDHVGDGEAKENITQKVAENIENE 164
           FHEPLII+        RLDE ATK+L+CWVDAI+SS DH GDGE KEN+  KV E IEN+
Sbjct: 183 FHEPLIIRHPQGHTVPRLDESATKELKCWVDAILSSRDHDGDGEVKENVIDKVDERIENQ 242

[Close]

BLAST of CmoCh06G000590 vs. TrEMBL
Match: A0A0B0NHA3_GOSAR (Dihydrofolate reductase OS=Gossypium arboreum GN=F383_11879 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.5e-26
Identity = 71/128 (55.47%), Postives = 90/128 (70.31%), Query Frame = 1


Query: 48  QGKVLKEHPTMKMFVSIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPSKELAST 107
           QGKVLKEHP  KMFVSI G+KF++ SICEVAYK KI VK VH IG KDWLKLPS++LA+ 
Sbjct: 119 QGKVLKEHPPFKMFVSISGSKFREPSICEVAYKDKINVKSVHFIGAKDWLKLPSEDLATA 178

Query: 108 FHEPLIIK-----ASSRLDEVATKKLRCWVDAIV-SSHDHVGDGEA-KENITQKVAENIE 167
           FH+PLII+        RLDE +T++LR W+  IV  + D +  GE   E  T+KV  +  
Sbjct: 179 FHDPLIIRHPQGHTVPRLDEESTEQLRKWIANIVFDNKDSISKGEEHDEQETRKV--DTP 238

Query: 168 NELENSNI 169
           NE++N+ I
Sbjct: 239 NEMQNNII 244

[Close]

BLAST of CmoCh06G000590 vs. TrEMBL
Match: A0A0D2QHL9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G231200 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.0e-25
Identity = 69/128 (53.91%), Postives = 89/128 (69.53%), Query Frame = 1


Query: 48  QGKVLKEHPTMKMFVSIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPSKELAST 107
           QGKVLKEHP  KMFVSI G+KF++ SICEVAYK KI VK VH IG KDWLKLPS++LA+ 
Sbjct: 119 QGKVLKEHPPFKMFVSISGSKFREPSICEVAYKDKINVKSVHFIGAKDWLKLPSEDLATA 178

Query: 108 FHEPLIIK-----ASSRLDEVATKKLRCWV-DAIVSSHDHVGDGEA-KENITQKVAENIE 167
           FH+PLII+        RLDEV+ ++LR W+ + +  ++D +  GE   E  T KV  +  
Sbjct: 179 FHDPLIIRHPQGHTVPRLDEVSIEQLRKWIANILFDNNDGISKGEEHDEQETLKV--DTP 238

Query: 168 NELENSNI 169
            EL+N+ I
Sbjct: 239 KELQNNII 244

[Close]

BLAST of CmoCh06G000590 vs. TrEMBL
Match: A0A0D2NRT5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G231200 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-24
Identity = 68/127 (53.54%), Postives = 88/127 (69.29%), Query Frame = 1


Query: 49  GKVLKEHPTMKMFVSIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPSKELASTF 108
           GKVLKEHP  KMFVSI G+KF++ SICEVAYK KI VK VH IG KDWLKLPS++LA+ F
Sbjct: 107 GKVLKEHPPFKMFVSISGSKFREPSICEVAYKDKINVKSVHFIGAKDWLKLPSEDLATAF 166

Query: 109 HEPLIIK-----ASSRLDEVATKKLRCWV-DAIVSSHDHVGDGEA-KENITQKVAENIEN 168
           H+PLII+        RLDEV+ ++LR W+ + +  ++D +  GE   E  T KV  +   
Sbjct: 167 HDPLIIRHPQGHTVPRLDEVSIEQLRKWIANILFDNNDGISKGEEHDEQETLKV--DTPK 226

[Close]

BLAST of CmoCh06G000590 vs. TrEMBL
Match: V4SSK3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012464mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.2e-24
Identity = 65/125 (52.00%), Postives = 80/125 (64.00%), Query Frame = 1


Query: 48  QGKVLKEHPTMKMFVSIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPSKELAST 107
           QGKVLKEHP MK+FVSI G+KF+D SICEVAYK  I VK  H IG KDWLKLPS+ELA+ 
Sbjct: 123 QGKVLKEHPPMKLFVSISGSKFRDPSICEVAYKDTINVKSAHFIGAKDWLKLPSEELATA 182

Query: 108 FHEPLIIK-----ASSRLDEVATKKLRCWVDAIVSSHDHVGDGEAKENITQKVAENIENE 167
           FH PLII+        RLDE AT+ LR W   I+  ++  G     + +   + EN++ E
Sbjct: 183 FHNPLIIRHPQGHTVPRLDEAATELLRGWTVEILRCNNR-GLNNNYDEMESGLIENVQKE 242

[Close]

BLAST of CmoCh06G000590 vs. NCBI nr
Match: gi|449437642|ref|XP_004136600.1| (PREDICTED: ovarian cancer-associated gene 2 protein homolog [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.5e-43
Identity = 91/121 (75.21%), Postives = 100/121 (82.64%), Query Frame = 1


Query: 48  QGKVLKEHPTMKMFVSIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPSKELAST 107
           QGKVLKEHP MKMFVSI GTKFKDESICEVAYKHKIKVK VH IGEKDWLKLPS++LAS 
Sbjct: 123 QGKVLKEHPPMKMFVSISGTKFKDESICEVAYKHKIKVKSVHFIGEKDWLKLPSQQLASV 182

Query: 108 FHEPLIIK-----ASSRLDEVATKKLRCWVDAIVSSHDHVGDGEAKENITQKVAENIENE 164
           FHEPLII+        RLDE ATK+L+CWVDAI+SS DH GDGE KEN+  KV E IEN+
Sbjct: 183 FHEPLIIRHPQGHTVPRLDESATKELKCWVDAILSSRDHDGDGEVKENVIDKVDERIENQ 242

[Close]

BLAST of CmoCh06G000590 vs. NCBI nr
Match: gi|659084917|ref|XP_008443142.1| (PREDICTED: UPF0483 protein C25G4.2-like [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 1.0e-39
Identity = 84/121 (69.42%), Postives = 97/121 (80.17%), Query Frame = 1


Query: 48  QGKVLKEHPTMKMFVSIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPSKELAST 107
           QGKVL+EHP +KMFVSI GTKFKDESICEVAYKHKIKVK VH IGEKDWLKLPS++LAS 
Sbjct: 121 QGKVLREHPPIKMFVSISGTKFKDESICEVAYKHKIKVKSVHFIGEKDWLKLPSQQLASV 180

Query: 108 FHEPLIIK-----ASSRLDEVATKKLRCWVDAIVSSHDHVGDGEAKENITQKVAENIENE 164
           FH+PLII+        RLDE ATK+L+CWVD I+SS  H GD E KE++  KV E IEN+
Sbjct: 181 FHQPLIIRHPQGHTVPRLDESATKELQCWVDTILSSRGHDGDSEVKESVIDKVDERIENQ 240

[Close]

BLAST of CmoCh06G000590 vs. NCBI nr
Match: gi|728831731|gb|KHG11174.1| (Dihydrofolate reductase [Gossypium arboreum])

HSP 1 Score: 125.9 bits (315), Expect = 6.5e-26
Identity = 71/128 (55.47%), Postives = 90/128 (70.31%), Query Frame = 1


Query: 48  QGKVLKEHPTMKMFVSIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPSKELAST 107
           QGKVLKEHP  KMFVSI G+KF++ SICEVAYK KI VK VH IG KDWLKLPS++LA+ 
Sbjct: 119 QGKVLKEHPPFKMFVSISGSKFREPSICEVAYKDKINVKSVHFIGAKDWLKLPSEDLATA 178

Query: 108 FHEPLIIK-----ASSRLDEVATKKLRCWVDAIV-SSHDHVGDGEA-KENITQKVAENIE 167
           FH+PLII+        RLDE +T++LR W+  IV  + D +  GE   E  T+KV  +  
Sbjct: 179 FHDPLIIRHPQGHTVPRLDEESTEQLRKWIANIVFDNKDSISKGEEHDEQETRKV--DTP 238

Query: 168 NELENSNI 169
           NE++N+ I
Sbjct: 239 NEMQNNII 244

[Close]

BLAST of CmoCh06G000590 vs. NCBI nr
Match: gi|1012191570|ref|XP_015970760.1| (PREDICTED: ovarian cancer-associated gene 2 protein homolog [Arachis duranensis])

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-25
Identity = 69/125 (55.20%), Postives = 84/125 (67.20%), Query Frame = 1


Query: 48  QGKVLKEHPTMKMFVSIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPSKELAST 107
           QGK+LKEHP +K+FVSI G KF+D SIC+VAYK  IK K VH IG+KDWLKLPS+ELAS 
Sbjct: 119 QGKLLKEHPPIKLFVSISGCKFRDPSICDVAYKEPIKAKSVHFIGDKDWLKLPSEELASA 178

Query: 108 FHEPLIIK-----ASSRLDEVATKKLRCWVDAIVSSHDHVGDGEAKENITQKVAENIENE 167
           F  PLII+        RLDEVAT +L+ WV A V SH  VG  E  + +  +V ++    
Sbjct: 179 FQNPLIIRHPQGHTVPRLDEVATSQLQNWV-AEVLSHRKVGISEYDKKLESEVNKSDAKV 238

[Close]

BLAST of CmoCh06G000590 vs. NCBI nr
Match: gi|1021529786|ref|XP_016161860.1| (PREDICTED: ovarian cancer-associated gene 2 protein homolog [Arachis ipaensis])

HSP 1 Score: 122.9 bits (307), Expect = 5.5e-25
Identity = 66/125 (52.80%), Postives = 85/125 (68.00%), Query Frame = 1


Query: 48  QGKVLKEHPTMKMFVSIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPSKELAST 107
           QGK+LKEHP +K+FVSI G KF+D SIC+VAYK  IK K VH IG+KDWLKLPS+ELAS 
Sbjct: 119 QGKLLKEHPPIKLFVSISGCKFRDPSICDVAYKEPIKAKSVHFIGDKDWLKLPSEELASA 178

Query: 108 FHEPLIIK-----ASSRLDEVATKKLRCWVDAIVSSHDHVGDGEAKENITQKVAENIENE 167
           F  PLII+        RLDE+AT +L+ WV+ ++ SH  VG  E  + +  +V ++    
Sbjct: 179 FQNPLIIRHPQGHTVPRLDEMATSQLQNWVEEVL-SHRKVGISEYDKKLESEVNKSDAKV 238

The following BLAST results are available for this feature:

BLAST of CmoCh06G000590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G000590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH35_CUCSA	1.1e-43	75.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G813300 PE=4 SV=1	[more]
A0A0B0NHA3_GOSAR	4.5e-26	55.47	Dihydrofolate reductase OS=Gossypium arboreum GN=F383_11879 PE=4 SV=1	[more]
A0A0D2QHL9_GOSRA	5.0e-25	53.91	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G231200 PE=4 SV=1	[more]
A0A0D2NRT5_GOSRA	1.9e-24	53.54	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G231200 PE=4 SV=1	[more]
V4SSK3_9ROSI	3.2e-24	52.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012464mg PE=4 SV=1	[more]

BLAST of CmoCh06G000590 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh06G000590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437642\|ref\|XP_004136600.1\|	1.5e-43	75.21	PREDICTED: ovarian cancer-associated gene 2 protein homolog [Cucumis sativus]	[more]
gi\|659084917\|ref\|XP_008443142.1\|	1.0e-39	69.42	PREDICTED: UPF0483 protein C25G4.2-like [Cucumis melo]	[more]
gi\|728831731\|gb\|KHG11174.1\|	6.5e-26	55.47	Dihydrofolate reductase [Gossypium arboreum]	[more]
gi\|1012191570\|ref\|XP_015970760.1\|	4.2e-25	55.20	PREDICTED: ovarian cancer-associated gene 2 protein homolog [Arachis duranensis]	[more]
gi\|1021529786\|ref\|XP_016161860.1\|	5.5e-25	52.80	PREDICTED: ovarian cancer-associated gene 2 protein homolog [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005645	FSH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G000590.1	CmoCh06G000590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005645	Serine hydrolase FSH	PFAM	PF03959	FSH1	coord: 47..110 score: 3.
None	No IPR available	PANTHER	PTHR22778	OVARIAN CANCER GENE-2 PROTEIN-RELATED	coord: 50..151 score: 7.5
None	No IPR available	PANTHER	PTHR22778:SF22	SUBFAMILY NOT NAMED	coord: 50..151 score: 7.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G000590	Cucsa.337060	Cucumber (Gy14) v1	cgycmoB0943
CmoCh06G000590	Cla017488	Watermelon (97103) v1	cmowmB774
CmoCh06G000590	Csa3G813300	Cucumber (Chinese Long) v2	cmocuB816
CmoCh06G000590	MELO3C009683	Melon (DHL92) v3.5.1	cmomeB744
CmoCh06G000590	ClCG10G017000	Watermelon (Charleston Gray)	cmowcgB723
CmoCh06G000590	CSPI03G37070	Wild cucumber (PI 183967)	cmocpiB824
CmoCh06G000590	Lsi03G016830	Bottle gourd (USVL1VR-Ls)	cmolsiB744
CmoCh06G000590	MELO3C009683.2	Melon (DHL92) v3.6.1	cmomedB846
CmoCh06G000590	CsaV3_3G039400	Cucumber (Chinese Long) v3	cmocucB0962
CmoCh06G000590	Cla97C10G199850	Watermelon (97103) v2	cmowmbB812
CmoCh06G000590	CsGy3G034530	Cucumber (Gy14) v2	cgybcmoB410
CmoCh06G000590	Carg01257	Silver-seed gourd	carcmoB0227

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G000590	Cucurbita pepo (Zucchini)	cmocpeB788
CmoCh06G000590	Cucurbita pepo (Zucchini)	cmocpeB794
CmoCh06G000590	Silver-seed gourd	carcmoB0350
CmoCh06G000590	Wax gourd	cmowgoB0984
CmoCh06G000590	Cucurbita moschata (Rifu)	cmocmoB225
CmoCh06G000590	Cucurbita maxima (Rimu)	cmacmoB272
CmoCh06G000590	Cucurbita maxima (Rimu)	cmacmoB829