CmoCh05G011840 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G011840
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	TIR-NBS-LRR disease resistance protein
Location	Cmo_Chr05 : 9291460 .. 9294565 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACCTTACTAGGCTCGCGAAATTAAACCTTGAAGGTTGCACAAACCTATCTCCCTTCCTAGTACAATTAATTTATTTGTTACGGAATATTAAGAGCCTGATGGGTGTTCTAGATTTGAAATGTTTCCCCATAAATGGGACTCATCAATCCATCCAATATGCGGAAACTTACTCAAAAACCCTAAATTTCCCTACTTCACTTTGGTAGATCTTCAATTTTGCAACATATCAAATGCAGATTTTTTGGAAACTTTATGTGATGTCAACCCTTTCATAAATAGGCTACTCTTGTGGGAAAACAAATTTTGTAGTCTACCCTCGTGTCTCCATAAGTTCATGTCTTTGGGAAATCTCCAATTGAGGAATTGCAAGTTTCTTCAACAAATTCCAAACCTTCCTCAGAGTATACAAAAAATGGATGCCACGGGATTTGGTTAAAAGTCCAGACAACATTTTGGATATAATATCAAGCAAGCAAGTTCATCTCTTCTCATTTCATTTCTCTTTGTTTATGTTGCATTTTTCTCTCTCATTAATATTTTCATGCATGTTAATTCTTATGTCACAGGACATTACACTCGTGACTTTCCTAGAGAGTTCATTCTAATGAACATTGAAATTCCAGAATGGTTCAGTTATCAGACTATATCAAATTCAATAAAAGTTAGCTTTCGACATGATCACAATTTAGAAAGAACTTTGGCTACCTATGCTAAGTTCAGAGTGGATGGAGATTCATATAAAGGGGAAGCCTTAATTTCATGTAACATATTCATCGGATACAGACTCCAAAATTCTTTTATGAGAAAGTTCTTACCATCAACATCAGAATATACATGGTTAGTAACAACTTCTCCAACATTTAGTAGCTCCTTACTGGCGAATGATTGGAATGATTTTATAGTTTGGTTTGAAGTTTTGAAACGTCACGAGGTTAATGTAACTATAAGAAGATGCGGTGTCCATCTCCTTGAGGTCCATGGGATATCCCAAATTGATGTTAAGGGGCCAGGGGTTATATATACAGATTTTGATGACATAGAAGAATTGCCAAGCCGGTGAGTGAGCTTACATCCTTGCCATCTTGATTGATTGGTTTCTTGTGTTGTTTGGAATAAACTATTCTCCTTTTCATATATATTATTTTCTTATGTAAGATGTTGATAATGGCACAGGGATGCTATCAAATCCTTTGCTCAAAACGTCTCCCGCTTATCATATTGCAGTGGAATGTTGCATGCAATGAACTTCCCAGTTGAAATTGATTCCAAAATACAACAGGTTCGGAACTTTCCCTTACATGTAACATTTTTGGGTATTACAATGATTCGTGGAATGGAAGGCCTGGCAGAGACTACACTCGGCAAAGCTATATGTGATAAATTTAAAAAAAAATCGTGACTACTGGAGATACGAAGGGAGGGCTTTAAATCATTCTAGTGGATTTCTTCAATTGAATAGCCGGAAATTAGCTTCTCCGTTCCACAATTTTACCCTTGGAGATAGTAAAAGAAGAATGCCATCCTCTCAAAATTATTTCAAAATTTTTGAACATAGGTATGAAAATCTAAATGGTTTTAGTGTATGGTCTTTTTGGCCGTTGATACACTACAGGAAATAATGGATACTTATAAGAGAAAAGTTGGAAAATGGCCGCGAGAATTTGAAAGGCATTATGACACTAAGATTTTAATGGTTTAGCTCGGGATCCTTCTACTCTTCGTATTTGGTTTGGTATTGATATTGTGCATGACTTTGCAAGTCATGATGATATGACTAAAAAACGTCTTTATCAGAATATTTTTGCTTTTCAATTTGGACAATTAGTAATAATTTTTTTGTGGAGTACTTTCGAAAATCTGTTTCATGTAGCAATTGACCCTTTATACATACAGGAGCTTTGCTCATGTACCTTAAGATCCTCAATTTGGTCAACTGGTCGTCGAAGCTTTTACTCGAGCAAGTGTTCTTGACCAAACTAAATATATGCGCTAAAGGACAGAGTTGTGTCGGTACAGACATGAGCGGGTGTTGTTTTATATCATCTACACTTACAAATCTTGAAAGAATCTATTGATTGTGATATTACTTCCTATTTTCACAGCCTAAGACCATCACAATGTTAGAAATCAGACGCTCTATAATGGTAAGATATTGTCCACTTAAGCATAAGCCTTCATGGCTTTATTTTTTGTTACTCTAGAAGGCCTCATACTAATAGAGATGTATTCCTTATAAACCCATGATCAACCCCTTAATTAGTCGATGTGAGACTCCTCTCCAAACGGTTCTCAACAATCTTCCCCTCGAACAAAATATACCATAGAGCCTCCGCTGAGGCCTATAAAGCCCTCGAACAGCCTCTTCTTAATTGAGGCTCAACTCCTTCTCTGGAGCTCTCAAACAAAGGACACTTGAGTCATTTTTGAATACACGTTTGAGGCTCACAACTTTTTTGTTCGACATTTTGAGAATTCTATTGACATGACTAAGTTAAGGCATGACTTTGATATCGGGTTAGAAACCACGACTCTCCACAATGATATGATATTGTCCATTTTGAGCATAAACTTTTTGTTACCCAAAACGCCTCACACCAATCAAAATGTGTTCCTTACTTTAAACTGGTGATCAATCTATTAGTTAATCAATAGGACTACTCTCCAAACAATCTTCTAACCCCTAGAATTTTAATGTCAGCCACCCGAAGAAATTAAGCCACTATCTTAGTGGAATACTAGCTTTTGACTGGGCCATTATCTCCATCAAATATTGGCTTTTGGCTAACTAAAGATGTCTTGTCTCTTATCGTTACTTTCTCACATATGGATTTAACAAATTTTAAAGACAAAAGTATAAGACAAATTGTATAATATTTTATTGATACTGGGATGGAAATGACGACATACCTTATTTTGTTTTATCTTCTTGAATTGATTTTTTAAAGACTTTGCTTGTTCTTTGTTGATGTTCTTAGCTCATCCATAACACCCTCTCTCCAATAGGAATTCATAAAAATTTGTTTATTAGAAGATGAATTATATACTTTTAAGACACGTATTAAAATGGATTTTTTATTTAACTACAGTTATTATAAATAA

mRNA sequence

ATGGGAAACCTTACTAGGCTCGCGAAATTAAACCTTGAAGAGCCTGATGGGTGTTCTAGATTTGAAATGTTTCCCCATAAATGGGACTCATCAATCCATCCAATATGCGGAAACTTACTCAAAAACCCTAAATTTCCCTACTTCACTTTGGTAGATCTTCAATTTTGCAACATATCAAATGCAGATTTTTTGGAAACTTTATGTGATGTCAACCCTTTCATAAATAGGCTACTCTTGTGGGAAAACAAATTTTGTAGTCTACCCTCGTGTCTCCATAAGTTCATGTCTTTGGGAAATCTCCAATTGAGGAATTGCAAGTTTCTTCAACAAATTCCAAACCTTCCTCAGAGTATACAAAAAATGGATGCCACGGGATTTGGACATTACACTCGTGACTTTCCTAGAGAGTTCATTCTAATGAACATTGAAATTCCAGAATGGTTCAGTTATCAGACTATATCAAATTCAATAAAAGTTAGCTTTCGACATGATCACAATTTAGAAAGAACTTTGGCTACCTATGCTAAGTTCAGAGTGGATGGAGATTCATATAAAGGGGAAGCCTTAATTTCATGTAACATATTCATCGGATACAGACTCCAAAATTCTTTTATGAGAAAGTTCTTACCATCAACATCAGAATATACATGGTTAGTAACAACTTCTCCAACATTTAGTAGCTCCTTACTGGCGAATGATTGGAATGATTTTATAGTTTGGTTTGAAGTTTTGAAACGTCACGAGGTTAATGTAACTATAAGAAGATGCGGTGTCCATCTCCTTGAGGTCCATGGGATATCCCAAATTGATGTTAAGGGGCCAGGGGTTATATATACAGATTTTGATGACATAGAAGAATTGCCAAGCCGGGATGCTATCAAATCCTTTGCTCAAAACGTCTCCCGCTTATCATATTGCAGTGGAATGTTGCATGCAATGAACTTCCCAGTTGAAATTGATTCCAAAATACAACAGGTTCGGAACTTTCCCTTACATGTAACATTTTTGGGTATTACAATGATTCGTGGAATGGAAGGCCTGGCAGAGACTACACTCGGCAAAGCTATATGTGATAAATTTAAAAAAAAATCCCGGAAATTAGCTTCTCCGTTCCACAATTTTACCCTTGGAGATAGTAAAAGAAGAATGCCATCCTCTCAAAATTATTTCAAAATTTTTGAACATAGGTATGAAAATCTAAATGGAGCTTTGCTCATGTACCTTAAGATCCTCAATTTGGTCAACTGGTCGTCGAAGCTTTTACTCGAGCAAGTGTTCTTGACCAAACTAAATATATGCGCTAAAGGACAGAGTTGTGTCGGTACAGACATGAGCGGTTATTATAAATAA

Coding sequence (CDS)

ATGGGAAACCTTACTAGGCTCGCGAAATTAAACCTTGAAGAGCCTGATGGGTGTTCTAGATTTGAAATGTTTCCCCATAAATGGGACTCATCAATCCATCCAATATGCGGAAACTTACTCAAAAACCCTAAATTTCCCTACTTCACTTTGGTAGATCTTCAATTTTGCAACATATCAAATGCAGATTTTTTGGAAACTTTATGTGATGTCAACCCTTTCATAAATAGGCTACTCTTGTGGGAAAACAAATTTTGTAGTCTACCCTCGTGTCTCCATAAGTTCATGTCTTTGGGAAATCTCCAATTGAGGAATTGCAAGTTTCTTCAACAAATTCCAAACCTTCCTCAGAGTATACAAAAAATGGATGCCACGGGATTTGGACATTACACTCGTGACTTTCCTAGAGAGTTCATTCTAATGAACATTGAAATTCCAGAATGGTTCAGTTATCAGACTATATCAAATTCAATAAAAGTTAGCTTTCGACATGATCACAATTTAGAAAGAACTTTGGCTACCTATGCTAAGTTCAGAGTGGATGGAGATTCATATAAAGGGGAAGCCTTAATTTCATGTAACATATTCATCGGATACAGACTCCAAAATTCTTTTATGAGAAAGTTCTTACCATCAACATCAGAATATACATGGTTAGTAACAACTTCTCCAACATTTAGTAGCTCCTTACTGGCGAATGATTGGAATGATTTTATAGTTTGGTTTGAAGTTTTGAAACGTCACGAGGTTAATGTAACTATAAGAAGATGCGGTGTCCATCTCCTTGAGGTCCATGGGATATCCCAAATTGATGTTAAGGGGCCAGGGGTTATATATACAGATTTTGATGACATAGAAGAATTGCCAAGCCGGGATGCTATCAAATCCTTTGCTCAAAACGTCTCCCGCTTATCATATTGCAGTGGAATGTTGCATGCAATGAACTTCCCAGTTGAAATTGATTCCAAAATACAACAGGTTCGGAACTTTCCCTTACATGTAACATTTTTGGGTATTACAATGATTCGTGGAATGGAAGGCCTGGCAGAGACTACACTCGGCAAAGCTATATGTGATAAATTTAAAAAAAAATCCCGGAAATTAGCTTCTCCGTTCCACAATTTTACCCTTGGAGATAGTAAAAGAAGAATGCCATCCTCTCAAAATTATTTCAAAATTTTTGAACATAGGTATGAAAATCTAAATGGAGCTTTGCTCATGTACCTTAAGATCCTCAATTTGGTCAACTGGTCGTCGAAGCTTTTACTCGAGCAAGTGTTCTTGACCAAACTAAATATATGCGCTAAAGGACAGAGTTGTGTCGGTACAGACATGAGCGGTTATTATAAATAA

Homology

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BLAST of CmoCh05G011840 vs. TrEMBL
Match: A0A0A0LLK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 9.2e-127
Identity = 251/440 (57.05%), Postives = 296/440 (67.27%), Query Frame = 1


Query: 17   GCSRFEMFPHKWDSSIHPICG-----NLLKNPKFPY-----------FTLVDLQFCNISN 76
            GCSRF++F  KWD + HP+C      +   + +FP+           FT++DLQ CNISN
Sbjct: 918  GCSRFQLFSRKWDPTAHPLCSFSKIMDTSSSSEFPHLLVPKESLCSKFTMLDLQCCNISN 977

Query: 77   ADFLETLCDVNPFINRLLLWENKFCSLPSCLHKFMSLGNLQLRNCKFLQQIPNLPQSIQK 136
             DFLE LC+V PF++ +LL ENKF SLP CLHKFMSL NLQLRNCKFLQ+IPNLP  IQK
Sbjct: 978  VDFLEILCNVAPFLSSILLSENKFSSLPPCLHKFMSLWNLQLRNCKFLQEIPNLPHCIQK 1037

Query: 137  MDATGFGHYTR------------------DFPREFILMNIEIPEWFSYQTISNSIKVSFR 196
            MDATG     R                  DF REFILMN  IPEWFSYQ+ISNSI+VSFR
Sbjct: 1038 MDATGCTLLGRSPDNIMDIISSKQDVALGDFTREFILMNTGIPEWFSYQSISNSIRVSFR 1097

Query: 197  HDHNLERTLATYAKFRVDGDSYKGEALISCNIFIGYRLQNSFMRKFLPSTSEYTWLVTTS 256
            HD N+ER LATYA  +V GDSY+G AL+SC IFIGYRLQ+ FMRKF  STSEYTWLVTTS
Sbjct: 1098 HDLNMERILATYATLQVVGDSYQGMALVSCKIFIGYRLQSCFMRKFPSSTSEYTWLVTTS 1157

Query: 257  -PTFSSSLLANDWNDFIVWFEVLKRHEVNVTIRRCGVHLLE-VHGISQIDVKGPGVIYTD 316
             PTFS+SL  N+WN   VWFEV+K  E  VTI+ CGVHL E VHGI Q DVKGPGV+YT 
Sbjct: 1158 SPTFSTSLEMNEWNHVTVWFEVVKCSEATVTIKCCGVHLTEEVHGI-QNDVKGPGVVYTV 1217

Query: 317  FDDIEELPSRDAIKSFAQNVSRLSYCSGMLHAMNFPVEIDSKIQQVRNFPLHVTFLGITM 376
            FD +++LPSRD IKSF Q VS  S C+ MLHA NFPV  DSK+QQ  NFPLHVT  G+T 
Sbjct: 1218 FDQLDKLPSRDVIKSFGQEVSAKSDCNAMLHAENFPVWNDSKMQQHMNFPLHVTSQGVTR 1277

Query: 377  IRGMEGLAETTLGKAICDKFKK-----KSRKLASPFHNFTLGDSK------------RRM 402
            IRGMEG+AETTL  +IC+K+++      ++K  +    F  GD                 
Sbjct: 1278 IRGMEGMAETTLANSICNKYERSRNLFSAKKALNHSTGFLCGDGNGLSWEMVDRPILSDR 1337

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BLAST of CmoCh05G011840 vs. TrEMBL
Match: A0A0A0LJM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 1.5e-92
Identity = 195/385 (50.65%), Postives = 238/385 (61.82%), Query Frame = 1


Query: 17   GCSRFEMFPHKWDSSIHPICGN----------------LLKNPKFPYFTLVDLQFCNISN 76
            GCS F MFP KW+ +I P+C                  L+ N  F + TL+DLQ CNISN
Sbjct: 821  GCSIFGMFPDKWNPTIQPVCSPSKMMETALWSLKVPHFLVPNESFSHITLLDLQSCNISN 880

Query: 77   ADFLETLCDVNPFINRLLLWENKFCSLPSCLHKFMSLGNLQLRNCKFLQQIPNLPQSIQK 136
            A+FL+ LCDV PF++ L L ENKF SLPSCLHKFMSL NL+LRNCKFLQ+IP+LP+SIQK
Sbjct: 881  ANFLDILCDVAPFLSDLRLSENKFSSLPSCLHKFMSLSNLELRNCKFLQEIPSLPESIQK 940

Query: 137  MDATGFGHYTR------------------DFPREFILMNIEIPEWFSYQTISNSIKVSFR 196
            MDA G     R                  +  REF+L  IEIPEWFSY+T SN +  SFR
Sbjct: 941  MDACGCESLARIPDNIVDIISKKQDLTMGEISREFLLTGIEIPEWFSYKTTSNLVSASFR 1000

Query: 197  HDHNLERTLATYAKFRVDGDSYKGEALISCNIFIGYRLQNSFMRKFLPSTSEYTWLVTTS 256
            H  ++ERTLA    F+V+G+S +  A ISCNIF+  RL  S  R FLPS SEY WLVTTS
Sbjct: 1001 HYPDMERTLAACVSFKVNGNSSERGARISCNIFVCNRLYFSLSRPFLPSKSEYMWLVTTS 1060

Query: 257  PTFSSSLLANDWNDFIVWFEVLKRH-EVNVTIRRCGVHLLEVHGISQIDVKGPGVIYTDF 316
                 S+  NDWN  +VWFEV + H EVN TI R GVH+ E     Q DVK P V Y DF
Sbjct: 1061 LAL-GSMEVNDWNKVLVWFEVHEAHSEVNATITRYGVHVTEELHAIQTDVKWPMVNYADF 1120

Query: 317  DDIEELPSRD----AIKSFAQNVSRLSYCSGMLHAMNFPVE--IDSKIQQVRNFPLHVTF 361
              +E+L S D     +K F + +S  S    ML+A N+  E  IDS IQ +  FPLHVT+
Sbjct: 1121 YQLEKLQSLDIEELLLKRFFEEMSCWSNSQAMLYAANYDPEAIIDSNIQPM-IFPLHVTY 1180

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BLAST of CmoCh05G011840 vs. TrEMBL
Match: E5GB33_CUCME (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 2.8e-83
Identity = 181/358 (50.56%), Postives = 217/358 (60.61%), Query Frame = 1


Query: 4    LTRLAKLNLEEPDGCSRFEMFPHKWDSSIHPICG---------------NLLKNPKF-PY 63
            L  L KL L    GCSRFEMFPHKWD +I P+C                +LL N     +
Sbjct: 919  LRNLDKLLLS---GCSRFEMFPHKWDPTIQPVCSPSKMMEATSWSLEYPHLLPNESLCSH 978

Query: 64   FTLVDLQFCNISNADFLETLCDVNPFINRLLLWENKFCSLPSCLHKFMSLGNLQLRNCKF 123
            FTL+DLQ CNISNA FLE LCDV PF++ L L ENKF SLPSCLHKFMSL NL+L+NCKF
Sbjct: 979  FTLLDLQSCNISNAKFLEILCDVAPFLSDLRLSENKFSSLPSCLHKFMSLWNLELKNCKF 1038

Query: 124  LQQIPNLPQSIQKMDATGFGHYTR------------------DFPREFILMNIEIPEWFS 183
            LQ+IPNLPQ+IQ +DA+G     R                  +  REF+L  IEIPEWFS
Sbjct: 1039 LQEIPNLPQNIQNLDASGCKSLARSPDNIMDIISIKQDLAMDEISREFLLTGIEIPEWFS 1098

Query: 184  YQTISNSIKVSFRHDHNLERTLATYAKFRVDGDSYKGEALISCNIFIGYRLQNSFMRKFL 243
            Y+T SN    SFRH  ++ERTLA    F+V+GDS +    ISCNIFI  +L  S+ R FL
Sbjct: 1099 YKTASNLASASFRHYQDIERTLAVGVIFKVNGDSSERGVRISCNIFICNKLHCSYSRPFL 1158

Query: 244  PSTSEYTWLVTTSPTFSSSLLANDWNDFIVWFEVLKRH-EVNVTIRRCGVHLLEVHGISQ 303
            PS SEY WL+TTS  +  S+  NDWN  +VWFEV + H EVN TI RCGVH+ E     Q
Sbjct: 1159 PSKSEYMWLLTTSLAW-GSMEVNDWNKVMVWFEVHEVHGEVNATITRCGVHVTEELPAIQ 1218

Query: 304  IDVKGPGVIYTDFDDIEELPSRD----AIKSFAQNVSRLSYCSG-MLHAMNFPVEIDS 322
             D K P V Y DF  +E+L S D     +K F + +S  S C   M HA N+  E +S
Sbjct: 1219 TDAKWPMVNYADFYQLEKLQSLDIEHLLLKRFFEEMSCWSNCKAIMFHAANYDPETNS 1272

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BLAST of CmoCh05G011840 vs. TrEMBL
Match: D9I8I4_CUCSA (TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.4e-77
Identity = 162/308 (52.60%), Postives = 194/308 (62.99%), Query Frame = 1


Query: 17   GCSRFEMFPHKWDSSIHPICGN----------------LLKNPKFPYFTLVDLQFCNISN 76
            GCS F MFP KW+ +I P+C                  L+ N  F +FTL+DLQ CNISN
Sbjct: 829  GCSIFGMFPDKWNPTIQPVCSPSKMMETALWSLKVPHFLVPNESFSHFTLLDLQSCNISN 888

Query: 77   ADFLETLCDVNPFINRLLLWENKFCSLPSCLHKFMSLGNLQLRNCKFLQQIPNLPQSIQK 136
            A+FL+ LCDV PF++ L L ENKF SLPSCLHKFMSL NL+LRNCKFLQ+IP+LP+SIQK
Sbjct: 889  ANFLDILCDVAPFLSDLRLSENKFSSLPSCLHKFMSLWNLELRNCKFLQEIPSLPESIQK 948

Query: 137  MDATGFGHYTR------------------DFPREFILMNIEIPEWFSYQTISNSIKVSFR 196
            MDA G    +R                  +  REF+L  IEIPEWFSY+T SN +  SFR
Sbjct: 949  MDACGCESLSRIPDNIVDIISKKQDLTMGEISREFLLTGIEIPEWFSYKTTSNLVSASFR 1008

Query: 197  HDHNLERTLATYAKFRVDGDSYKGEALISCNIFIGYRLQNSFMRKFLPSTSEYTWLVTTS 256
            H  ++ERTLA    F+V+G+S +  A ISCNIF+  RL  S  R FLPS SEY WLVTTS
Sbjct: 1009 HYPDMERTLAACVSFKVNGNSSERGARISCNIFVCNRLYFSLSRPFLPSKSEYMWLVTTS 1068

Query: 257  PTFSSSLLANDWNDFIVWFEVLKRH-EVNVTIRRCGVHLLEVHGISQIDVKGPGVIYTDF 290
                 S+  NDWN  +VWFEV + H EVN TI R GVH+ E     Q DVK P V Y DF
Sbjct: 1069 LAL-GSMEVNDWNKVLVWFEVHEAHSEVNATITRYGVHVTEELHAIQTDVKWPMVNYADF 1128

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BLAST of CmoCh05G011840 vs. TrEMBL
Match: A0A0A0LLL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020940 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 5.7e-76
Identity = 164/317 (51.74%), Postives = 202/317 (63.72%), Query Frame = 1


Query: 7    LAKLNLEEPDGCSRFEMFPHKWDSSIHPICG--NLLK----NPKFPY-----------FT 66
            L  LN     GCSRFEMFPHKW  +I P+C    +++    + +FP+           FT
Sbjct: 850  LRNLNELHLGGCSRFEMFPHKWVPTIQPVCSPSKMMEAASWSLEFPHLVVPNESICSHFT 909

Query: 67   LVDLQFCNISNADFLETLCDVNPFINRLLLWENKFCSLPSCLHKFMSLGNLQLRNCKFLQ 126
            L+DL+ CNIS+A FLE LCDV PF++ L L ENKF SLPSCLHKFMSL NL+LRNCKFLQ
Sbjct: 910  LLDLKSCNISSAKFLEILCDVAPFLSDLRLSENKFSSLPSCLHKFMSLSNLELRNCKFLQ 969

Query: 127  QIPNLPQSIQKMDATGFGHYTR------------------DFPREFILMNIEIPEWFSYQ 186
            +IPNLPQ+I+ +DA+G     R                  +  REF+L +IEIPEWFSY+
Sbjct: 970  EIPNLPQNIRNLDASGCKSLARSPDNIVDIISIKQDLELGEILREFLLTDIEIPEWFSYK 1029

Query: 187  TISNSIKVSFRHDHNLERTLATYAKFRVDGDSYKGEALISCNIFIGYRLQNSFMRKFLPS 246
            T SN +  S RH  ++ERTLA    F+V+GDS + EA ISCNIFI  +L+  F R FLPS
Sbjct: 1030 TASNLVTASLRHYPDMERTLAVAVSFKVNGDSSESEAQISCNIFIYNKLRCLFSRSFLPS 1089

Query: 247  TSEYTWLVTTSPTFSSSLLANDWNDFIVWFEVLKRHEVNVTIRRCGVHLLE-VHGISQID 288
             SEY WLVT S   + SL  NDWN   VWFEV + H   VT+ R GVH+ E +HGI Q D
Sbjct: 1090 KSEYMWLVTIS--LACSLEVNDWNKVFVWFEVHEAH--GVTVTRYGVHVTEQLHGI-QTD 1149

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BLAST of CmoCh05G011840 vs. NCBI nr
Match: gi|778666709|ref|XP_011648797.1| (PREDICTED: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 461.8 bits (1187), Expect = 1.3e-126
Identity = 251/440 (57.05%), Postives = 296/440 (67.27%), Query Frame = 1


Query: 17   GCSRFEMFPHKWDSSIHPICG-----NLLKNPKFPY-----------FTLVDLQFCNISN 76
            GCSRF++F  KWD + HP+C      +   + +FP+           FT++DLQ CNISN
Sbjct: 918  GCSRFQLFSRKWDPTAHPLCSFSKIMDTSSSSEFPHLLVPKESLCSKFTMLDLQCCNISN 977

Query: 77   ADFLETLCDVNPFINRLLLWENKFCSLPSCLHKFMSLGNLQLRNCKFLQQIPNLPQSIQK 136
             DFLE LC+V PF++ +LL ENKF SLP CLHKFMSL NLQLRNCKFLQ+IPNLP  IQK
Sbjct: 978  VDFLEILCNVAPFLSSILLSENKFSSLPPCLHKFMSLWNLQLRNCKFLQEIPNLPHCIQK 1037

Query: 137  MDATGFGHYTR------------------DFPREFILMNIEIPEWFSYQTISNSIKVSFR 196
            MDATG     R                  DF REFILMN  IPEWFSYQ+ISNSI+VSFR
Sbjct: 1038 MDATGCTLLGRSPDNIMDIISSKQDVALGDFTREFILMNTGIPEWFSYQSISNSIRVSFR 1097

Query: 197  HDHNLERTLATYAKFRVDGDSYKGEALISCNIFIGYRLQNSFMRKFLPSTSEYTWLVTTS 256
            HD N+ER LATYA  +V GDSY+G AL+SC IFIGYRLQ+ FMRKF  STSEYTWLVTTS
Sbjct: 1098 HDLNMERILATYATLQVVGDSYQGMALVSCKIFIGYRLQSCFMRKFPSSTSEYTWLVTTS 1157

Query: 257  -PTFSSSLLANDWNDFIVWFEVLKRHEVNVTIRRCGVHLLE-VHGISQIDVKGPGVIYTD 316
             PTFS+SL  N+WN   VWFEV+K  E  VTI+ CGVHL E VHGI Q DVKGPGV+YT 
Sbjct: 1158 SPTFSTSLEMNEWNHVTVWFEVVKCSEATVTIKCCGVHLTEEVHGI-QNDVKGPGVVYTV 1217

Query: 317  FDDIEELPSRDAIKSFAQNVSRLSYCSGMLHAMNFPVEIDSKIQQVRNFPLHVTFLGITM 376
            FD +++LPSRD IKSF Q VS  S C+ MLHA NFPV  DSK+QQ  NFPLHVT  G+T 
Sbjct: 1218 FDQLDKLPSRDVIKSFGQEVSAKSDCNAMLHAENFPVWNDSKMQQHMNFPLHVTSQGVTR 1277

Query: 377  IRGMEGLAETTLGKAICDKFKK-----KSRKLASPFHNFTLGDSK------------RRM 402
            IRGMEG+AETTL  +IC+K+++      ++K  +    F  GD                 
Sbjct: 1278 IRGMEGMAETTLANSICNKYERSRNLFSAKKALNHSTGFLCGDGNGLSWEMVDRPILSDR 1337

[Close]

BLAST of CmoCh05G011840 vs. NCBI nr
Match: gi|700205747|gb|KGN60866.1| (hypothetical protein Csa_2G020890 [Cucumis sativus])

HSP 1 Score: 461.8 bits (1187), Expect = 1.3e-126
Identity = 251/440 (57.05%), Postives = 296/440 (67.27%), Query Frame = 1


Query: 17   GCSRFEMFPHKWDSSIHPICG-----NLLKNPKFPY-----------FTLVDLQFCNISN 76
            GCSRF++F  KWD + HP+C      +   + +FP+           FT++DLQ CNISN
Sbjct: 918  GCSRFQLFSRKWDPTAHPLCSFSKIMDTSSSSEFPHLLVPKESLCSKFTMLDLQCCNISN 977

Query: 77   ADFLETLCDVNPFINRLLLWENKFCSLPSCLHKFMSLGNLQLRNCKFLQQIPNLPQSIQK 136
             DFLE LC+V PF++ +LL ENKF SLP CLHKFMSL NLQLRNCKFLQ+IPNLP  IQK
Sbjct: 978  VDFLEILCNVAPFLSSILLSENKFSSLPPCLHKFMSLWNLQLRNCKFLQEIPNLPHCIQK 1037

Query: 137  MDATGFGHYTR------------------DFPREFILMNIEIPEWFSYQTISNSIKVSFR 196
            MDATG     R                  DF REFILMN  IPEWFSYQ+ISNSI+VSFR
Sbjct: 1038 MDATGCTLLGRSPDNIMDIISSKQDVALGDFTREFILMNTGIPEWFSYQSISNSIRVSFR 1097

Query: 197  HDHNLERTLATYAKFRVDGDSYKGEALISCNIFIGYRLQNSFMRKFLPSTSEYTWLVTTS 256
            HD N+ER LATYA  +V GDSY+G AL+SC IFIGYRLQ+ FMRKF  STSEYTWLVTTS
Sbjct: 1098 HDLNMERILATYATLQVVGDSYQGMALVSCKIFIGYRLQSCFMRKFPSSTSEYTWLVTTS 1157

Query: 257  -PTFSSSLLANDWNDFIVWFEVLKRHEVNVTIRRCGVHLLE-VHGISQIDVKGPGVIYTD 316
             PTFS+SL  N+WN   VWFEV+K  E  VTI+ CGVHL E VHGI Q DVKGPGV+YT 
Sbjct: 1158 SPTFSTSLEMNEWNHVTVWFEVVKCSEATVTIKCCGVHLTEEVHGI-QNDVKGPGVVYTV 1217

Query: 317  FDDIEELPSRDAIKSFAQNVSRLSYCSGMLHAMNFPVEIDSKIQQVRNFPLHVTFLGITM 376
            FD +++LPSRD IKSF Q VS  S C+ MLHA NFPV  DSK+QQ  NFPLHVT  G+T 
Sbjct: 1218 FDQLDKLPSRDVIKSFGQEVSAKSDCNAMLHAENFPVWNDSKMQQHMNFPLHVTSQGVTR 1277

Query: 377  IRGMEGLAETTLGKAICDKFKK-----KSRKLASPFHNFTLGDSK------------RRM 402
            IRGMEG+AETTL  +IC+K+++      ++K  +    F  GD                 
Sbjct: 1278 IRGMEGMAETTLANSICNKYERSRNLFSAKKALNHSTGFLCGDGNGLSWEMVDRPILSDR 1337

[Close]

BLAST of CmoCh05G011840 vs. NCBI nr
Match: gi|659070453|ref|XP_008455171.1| (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 457.6 bits (1176), Expect = 2.5e-125
Identity = 249/441 (56.46%), Postives = 299/441 (67.80%), Query Frame = 1


Query: 17   GCSRFEMFPHKWDSSIHPICG-----NLLKNPKFPY-----------FTLVDLQFCNISN 76
            GCSRF+MF H+WD + HP+C          + +FP+           FTL+DL+ CNISN
Sbjct: 916  GCSRFQMFSHRWDPTTHPVCSFSKIMETSSSSEFPHLLVPKESLCSKFTLLDLRCCNISN 975

Query: 77   ADFLETLCDVNPFINRLLLWENKFCSLPSCLHKFMSLGNLQLRNCKFLQQIPNLPQSIQK 136
             DFL  LC V PF++ +LL ENKF SLPSCLHKFMSL NLQLRNCKFLQ+IPNLP  IQK
Sbjct: 976  VDFLXILCKVAPFLSSILLSENKFSSLPSCLHKFMSLWNLQLRNCKFLQEIPNLPHCIQK 1035

Query: 137  MDATGFGHYTR------------------DFPREFILMNIEIPEWFSYQTISNSIKVSFR 196
            +DATG     R                  DF REF+LMN  IPEWF YQ+IS S++VSFR
Sbjct: 1036 LDATGCSLLGRSPDNIMDIISSKQDVALGDFTREFVLMNTGIPEWFKYQSISTSVRVSFR 1095

Query: 197  HDHNLERTLATYAKFRVDGDSYKGEALISCNIFIGYRLQNSFMRKFLPSTSEYTWLVTTS 256
            HD N+ERTLATYA F+V GDS++G AL+SC IFIGYRLQ+ FMRKF  STSEYTWLVTTS
Sbjct: 1096 HDLNMERTLATYATFQVVGDSHRGMALVSCKIFIGYRLQSCFMRKFPSSTSEYTWLVTTS 1155

Query: 257  -PTFSSSLLANDWNDFIVWFEVLKRHEVNVTIRRCGVHLLE-VHGISQIDVKGPGVIYTD 316
             PTFS+SL  N+WN   VWFEV+K  EV VTI+ CGVHL E VHGI Q DVKGPGVIYT 
Sbjct: 1156 SPTFSTSLEMNEWNHVTVWFEVVKCSEVTVTIKCCGVHLTEEVHGI-QNDVKGPGVIYTV 1215

Query: 317  FDDIEELPSRDAIKSFAQNVSRLSYCSGMLHAMNFPVEIDSKIQQVRNFPLHVTFLGITM 376
            FD  ++LPSRD +KSFAQ VS  S C+ +LHA NFPV  DSK+Q+  NFPLHVT  G+T 
Sbjct: 1216 FDQPDKLPSRDVVKSFAQEVSAKSDCNAILHAENFPVWNDSKMQRHMNFPLHVTSQGVTR 1275

Query: 377  IRGMEGLAETTLGKAICDKFKK-----KSRKLASPFHNFTLGD-------------SKRR 402
            IRGMEG+AET L  +IC+K+++      ++K+ +    F  GD             S  R
Sbjct: 1276 IRGMEGMAETILANSICNKYERSQNLFSAKKVLNHSTAFLRGDGNGLSWEMVDSPISSDR 1335

[Close]

BLAST of CmoCh05G011840 vs. NCBI nr
Match: gi|778666836|ref|XP_011648823.1| (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 2.1e-92
Identity = 195/385 (50.65%), Postives = 238/385 (61.82%), Query Frame = 1


Query: 17   GCSRFEMFPHKWDSSIHPICGN----------------LLKNPKFPYFTLVDLQFCNISN 76
            GCS F MFP KW+ +I P+C                  L+ N  F + TL+DLQ CNISN
Sbjct: 858  GCSIFGMFPDKWNPTIQPVCSPSKMMETALWSLKVPHFLVPNESFSHITLLDLQSCNISN 917

Query: 77   ADFLETLCDVNPFINRLLLWENKFCSLPSCLHKFMSLGNLQLRNCKFLQQIPNLPQSIQK 136
            A+FL+ LCDV PF++ L L ENKF SLPSCLHKFMSL NL+LRNCKFLQ+IP+LP+SIQK
Sbjct: 918  ANFLDILCDVAPFLSDLRLSENKFSSLPSCLHKFMSLSNLELRNCKFLQEIPSLPESIQK 977

Query: 137  MDATGFGHYTR------------------DFPREFILMNIEIPEWFSYQTISNSIKVSFR 196
            MDA G     R                  +  REF+L  IEIPEWFSY+T SN +  SFR
Sbjct: 978  MDACGCESLARIPDNIVDIISKKQDLTMGEISREFLLTGIEIPEWFSYKTTSNLVSASFR 1037

Query: 197  HDHNLERTLATYAKFRVDGDSYKGEALISCNIFIGYRLQNSFMRKFLPSTSEYTWLVTTS 256
            H  ++ERTLA    F+V+G+S +  A ISCNIF+  RL  S  R FLPS SEY WLVTTS
Sbjct: 1038 HYPDMERTLAACVSFKVNGNSSERGARISCNIFVCNRLYFSLSRPFLPSKSEYMWLVTTS 1097

Query: 257  PTFSSSLLANDWNDFIVWFEVLKRH-EVNVTIRRCGVHLLEVHGISQIDVKGPGVIYTDF 316
                 S+  NDWN  +VWFEV + H EVN TI R GVH+ E     Q DVK P V Y DF
Sbjct: 1098 LAL-GSMEVNDWNKVLVWFEVHEAHSEVNATITRYGVHVTEELHAIQTDVKWPMVNYADF 1157

Query: 317  DDIEELPSRD----AIKSFAQNVSRLSYCSGMLHAMNFPVE--IDSKIQQVRNFPLHVTF 361
              +E+L S D     +K F + +S  S    ML+A N+  E  IDS IQ +  FPLHVT+
Sbjct: 1158 YQLEKLQSLDIEELLLKRFFEEMSCWSNSQAMLYAANYDPEAIIDSNIQPM-IFPLHVTY 1217

[Close]

BLAST of CmoCh05G011840 vs. NCBI nr
Match: gi|700205788|gb|KGN60907.1| (hypothetical protein Csa_2G022270 [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 2.1e-92
Identity = 195/385 (50.65%), Postives = 238/385 (61.82%), Query Frame = 1


Query: 17   GCSRFEMFPHKWDSSIHPICGN----------------LLKNPKFPYFTLVDLQFCNISN 76
            GCS F MFP KW+ +I P+C                  L+ N  F + TL+DLQ CNISN
Sbjct: 821  GCSIFGMFPDKWNPTIQPVCSPSKMMETALWSLKVPHFLVPNESFSHITLLDLQSCNISN 880

Query: 77   ADFLETLCDVNPFINRLLLWENKFCSLPSCLHKFMSLGNLQLRNCKFLQQIPNLPQSIQK 136
            A+FL+ LCDV PF++ L L ENKF SLPSCLHKFMSL NL+LRNCKFLQ+IP+LP+SIQK
Sbjct: 881  ANFLDILCDVAPFLSDLRLSENKFSSLPSCLHKFMSLSNLELRNCKFLQEIPSLPESIQK 940

Query: 137  MDATGFGHYTR------------------DFPREFILMNIEIPEWFSYQTISNSIKVSFR 196
            MDA G     R                  +  REF+L  IEIPEWFSY+T SN +  SFR
Sbjct: 941  MDACGCESLARIPDNIVDIISKKQDLTMGEISREFLLTGIEIPEWFSYKTTSNLVSASFR 1000

Query: 197  HDHNLERTLATYAKFRVDGDSYKGEALISCNIFIGYRLQNSFMRKFLPSTSEYTWLVTTS 256
            H  ++ERTLA    F+V+G+S +  A ISCNIF+  RL  S  R FLPS SEY WLVTTS
Sbjct: 1001 HYPDMERTLAACVSFKVNGNSSERGARISCNIFVCNRLYFSLSRPFLPSKSEYMWLVTTS 1060

Query: 257  PTFSSSLLANDWNDFIVWFEVLKRH-EVNVTIRRCGVHLLEVHGISQIDVKGPGVIYTDF 316
                 S+  NDWN  +VWFEV + H EVN TI R GVH+ E     Q DVK P V Y DF
Sbjct: 1061 LAL-GSMEVNDWNKVLVWFEVHEAHSEVNATITRYGVHVTEELHAIQTDVKWPMVNYADF 1120

Query: 317  DDIEELPSRD----AIKSFAQNVSRLSYCSGMLHAMNFPVE--IDSKIQQVRNFPLHVTF 361
              +E+L S D     +K F + +S  S    ML+A N+  E  IDS IQ +  FPLHVT+
Sbjct: 1121 YQLEKLQSLDIEELLLKRFFEEMSCWSNSQAMLYAANYDPEAIIDSNIQPM-IFPLHVTY 1180

The following BLAST results are available for this feature:

BLAST of CmoCh05G011840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G011840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLK3_CUCSA	9.2e-127	57.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1	[more]
A0A0A0LJM0_CUCSA	1.5e-92	50.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1	[more]
E5GB33_CUCME	2.8e-83	50.56	TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
D9I8I4_CUCSA	1.4e-77	52.60	TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1	[more]
A0A0A0LLL0_CUCSA	5.7e-76	51.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020940 PE=4 SV=1	[more]

BLAST of CmoCh05G011840 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh05G011840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778666709\|ref\|XP_011648797.1\|	1.3e-126	57.05	PREDICTED: TMV resistance protein N-like [Cucumis sativus]	[more]
gi\|700205747\|gb\|KGN60866.1\|	1.3e-126	57.05	hypothetical protein Csa_2G020890 [Cucumis sativus]	[more]
gi\|659070453\|ref\|XP_008455171.1\|	2.5e-125	56.46	PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo]	[more]
gi\|778666836\|ref\|XP_011648823.1\|	2.1e-92	50.65	PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis sativus]	[more]
gi\|700205788\|gb\|KGN60907.1\|	2.1e-92	50.65	hypothetical protein Csa_2G022270 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G011840.1	CmoCh05G011840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	SSF52047	RNI-like	coord: 3..113 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G011840	Csa2G021720	Cucumber (Chinese Long) v2	cmocuB782
CmoCh05G011840	Csa2G020860	Cucumber (Chinese Long) v2	cmocuB783
CmoCh05G011840	MELO3C004310	Melon (DHL92) v3.5.1	cmomeB724
CmoCh05G011840	CSPI02G03530	Wild cucumber (PI 183967)	cmocpiB787

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G011840	Silver-seed gourd	carcmoB0974
CmoCh05G011840	Cucumber (Chinese Long) v3	cmocucB0924
CmoCh05G011840	Watermelon (97103) v2	cmowmbB785
CmoCh05G011840	Cucurbita moschata (Rifu)	cmocmoB148
CmoCh05G011840	Cucumber (Gy14) v1	cgycmoB0179
CmoCh05G011840	Cucurbita maxima (Rimu)	cmacmoB190
CmoCh05G011840	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G011840	Watermelon (Charleston Gray)	cmowcgB700
CmoCh05G011840	Watermelon (97103) v1	cmowmB757
CmoCh05G011840	Cucurbita pepo (Zucchini)	cmocpeB721
CmoCh05G011840	Cucurbita pepo (Zucchini)	cmocpeB742
CmoCh05G011840	Bottle gourd (USVL1VR-Ls)	cmolsiB706
CmoCh05G011840	Cucumber (Gy14) v2	cgybcmoB243
CmoCh05G011840	Melon (DHL92) v3.6.1	cmomedB821