CSPI02G03530 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G03530
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	TIR-NBS-LRR-AAA+ATPase class resistance protein
Location	Chr2 : 2505455 .. 2505883 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGTGGGATTCCGGAATGGTTGAGCTATGAGACTGCATCAAATTCAATAAGGGCCAGTTTTCAACACAATCGCAATAGAAAGATAACTTTGGCTACATCCGTTACTTTCCGAGTGGATATTGGAGATTCATATCAAGGAATGGCCTTAGTTTCATGTAACGTATTCATCGGTTGTAGACTCGAAAGTTGTCATATGAGAAAATTTCCAACATCAACATTAGAATATACATGGTTAGTAGAAGCTTTTTCTACAAGACAAAGTGAGTCCTTGGAAGAGAATGATTGGAATGATGTTATAGTCTGGTTTGAGGCTGTGAAATGCCTACTATTGCCTACTATAATTTTCACTTTATTTATAAACTTTATTGCCTACTATAATTTTCCAAAATTTATTTATATTAAAGTACAAACCTTTAATATATAG

mRNA sequence

ATGAATAGTGGGATTCCGGAATGGTTGAGCTATGAGACTGCATCAAATTCAATAAGGGCCAGTTTTCAACACAATCGCAATAGAAAGATAACTTTGGCTACATCCGTTACTTTCCGAGTGGATATTGGAGATTCATATCAAGGAATGGCCTTAGTTTCATGTAACGTATTCATCGGTTGTAGACTCGAAAGTTGTCATATGAGAAAATTTCCAACATCAACATTAGAATATACATGGTTAGTAGAAGCTTTTTCTACAAGACAAAGTGAGTCCTTGGAAGAGAATGATTGGAATGATGTTATAGTCTGGTTTGAGGCTGTGAAATGCCTACTATTGCCTACTATAATTTTCACTTTATTTATAAACTTTATTGCCTACTATAATTTTCCAAAATTTATTTATATTAAAGTACAAACCTTTAATATATAG

Coding sequence (CDS)

ATGAATAGTGGGATTCCGGAATGGTTGAGCTATGAGACTGCATCAAATTCAATAAGGGCCAGTTTTCAACACAATCGCAATAGAAAGATAACTTTGGCTACATCCGTTACTTTCCGAGTGGATATTGGAGATTCATATCAAGGAATGGCCTTAGTTTCATGTAACGTATTCATCGGTTGTAGACTCGAAAGTTGTCATATGAGAAAATTTCCAACATCAACATTAGAATATACATGGTTAGTAGAAGCTTTTTCTACAAGACAAAGTGAGTCCTTGGAAGAGAATGATTGGAATGATGTTATAGTCTGGTTTGAGGCTGTGAAATGCCTACTATTGCCTACTATAATTTTCACTTTATTTATAAACTTTATTGCCTACTATAATTTTCCAAAATTTATTTATATTAAAGTACAAACCTTTAATATATAG

Homology

[Close]

BLAST of CSPI02G03530 vs. TrEMBL
Match: A0A0A0LGA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020860 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.5e-73
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
           MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC
Sbjct: 1   MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60

Query: 61  RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKCLLLPTIIFTLF 120
           RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIV FEAVK LLLPTIIFTLF
Sbjct: 61  RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVLFEAVKWLLLPTIIFTLF 120

Query: 121 INFIAYYNFPKFIYIKVQTFNI 143
           INFIAYYNFPKFIYIKVQTFNI
Sbjct: 121 INFIAYYNFPKFIYIKVQTFNI 142

[Close]

BLAST of CSPI02G03530 vs. TrEMBL
Match: A0A0A0LLK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-32
Identity = 71/109 (65.14%), Postives = 83/109 (76.15%), Query Frame = 1


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
            MN+GIPEW SY++ SNSIR SF+H+ N +  LAT  T +V +GDSYQGMALVSC +FIG 
Sbjct: 1075 MNTGIPEWFSYQSISNSIRVSFRHDLNMERILATYATLQV-VGDSYQGMALVSCKIFIGY 1134

Query: 61   RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKC 110
            RL+SC MRKFP+ST EYTWLV   S   S SLE N+WN V VWFE VKC
Sbjct: 1135 RLQSCFMRKFPSSTSEYTWLVTTSSPTFSTSLEMNEWNHVTVWFEVVKC 1182

[Close]

BLAST of CSPI02G03530 vs. TrEMBL
Match: A0A0A0LLP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021720 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.8e-31
Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 1


Query: 1   MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
           MNSGIPEWLSY+T S+SIR SFQHNRN + TLATSVTFRVD GDSYQGMALVSCN+FIGC
Sbjct: 33  MNSGIPEWLSYQTTSDSIRVSFQHNRNTERTLATSVTFRVD-GDSYQGMALVSCNIFIGC 92

Query: 61  RLESCHMRKFPTSTLEYTW---LVEAFSTRQS 90
           RL+SC+MRKFPTST EYTW   LV++F+   S
Sbjct: 93  RLKSCYMRKFPTSTSEYTWYKNLVKSFAQEVS 123

[Close]

BLAST of CSPI02G03530 vs. TrEMBL
Match: A0A0A0LLL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020940 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-15
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 1


Query: 5    IPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGCRLES 64
            IPEW SY+TASN + AS +H  + + TLA +V+F+V+ GDS +  A +SCN+FI  +L  
Sbjct: 1022 IPEWFSYKTASNLVTASLRHYPDMERTLAVAVSFKVN-GDSSESEAQISCNIFIYNKLRC 1081

Query: 65   CHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFE 106
               R F  S  EY WLV   +   + SLE NDWN V VWFE
Sbjct: 1082 LFSRSFLPSKSEYMWLV---TISLACSLEVNDWNKVFVWFE 1118

[Close]

BLAST of CSPI02G03530 vs. TrEMBL
Match: E5GB33_CUCME (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-14
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = 1


Query: 5    IPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGCRLES 64
            IPEW SY+TASN   ASF+H ++ + TLA  V F+V+ GDS +    +SCN+FI  +L  
Sbjct: 1090 IPEWFSYKTASNLASASFRHYQDIERTLAVGVIFKVN-GDSSERGVRISCNIFICNKLHC 1149

Query: 65   CHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFE 106
             + R F  S  EY WL+   ++    S+E NDWN V+VWFE
Sbjct: 1150 SYSRPFLPSKSEYMWLLT--TSLAWGSMEVNDWNKVMVWFE 1187

[Close]

BLAST of CSPI02G03530 vs. NCBI nr
Match: gi|700205744|gb|KGN60863.1| (hypothetical protein Csa_2G020860 [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 7.8e-73
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 1


Query: 1   MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
           MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC
Sbjct: 1   MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60

Query: 61  RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKCLLLPTIIFTLF 120
           RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIV FEAVK LLLPTIIFTLF
Sbjct: 61  RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVLFEAVKWLLLPTIIFTLF 120

Query: 121 INFIAYYNFPKFIYIKVQTFNI 143
           INFIAYYNFPKFIYIKVQTFNI
Sbjct: 121 INFIAYYNFPKFIYIKVQTFNI 142

[Close]

BLAST of CSPI02G03530 vs. NCBI nr
Match: gi|778666709|ref|XP_011648797.1| (PREDICTED: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-32
Identity = 71/109 (65.14%), Postives = 83/109 (76.15%), Query Frame = 1


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
            MN+GIPEW SY++ SNSIR SF+H+ N +  LAT  T +V +GDSYQGMALVSC +FIG 
Sbjct: 1075 MNTGIPEWFSYQSISNSIRVSFRHDLNMERILATYATLQV-VGDSYQGMALVSCKIFIGY 1134

Query: 61   RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKC 110
            RL+SC MRKFP+ST EYTWLV   S   S SLE N+WN V VWFE VKC
Sbjct: 1135 RLQSCFMRKFPSSTSEYTWLVTTSSPTFSTSLEMNEWNHVTVWFEVVKC 1182

[Close]

BLAST of CSPI02G03530 vs. NCBI nr
Match: gi|700205747|gb|KGN60866.1| (hypothetical protein Csa_2G020890 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-32
Identity = 71/109 (65.14%), Postives = 83/109 (76.15%), Query Frame = 1


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
            MN+GIPEW SY++ SNSIR SF+H+ N +  LAT  T +V +GDSYQGMALVSC +FIG 
Sbjct: 1075 MNTGIPEWFSYQSISNSIRVSFRHDLNMERILATYATLQV-VGDSYQGMALVSCKIFIGY 1134

Query: 61   RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKC 110
            RL+SC MRKFP+ST EYTWLV   S   S SLE N+WN V VWFE VKC
Sbjct: 1135 RLQSCFMRKFPSSTSEYTWLVTTSSPTFSTSLEMNEWNHVTVWFEVVKC 1182

[Close]

BLAST of CSPI02G03530 vs. NCBI nr
Match: gi|659070453|ref|XP_008455171.1| (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 1.5e-31
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 1


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
            MN+GIPEW  Y++ S S+R SF+H+ N + TLAT  TF+V +GDS++GMALVSC +FIG 
Sbjct: 1073 MNTGIPEWFKYQSISTSVRVSFRHDLNMERTLATYATFQV-VGDSHRGMALVSCKIFIGY 1132

Query: 61   RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKC 110
            RL+SC MRKFP+ST EYTWLV   S   S SLE N+WN V VWFE VKC
Sbjct: 1133 RLQSCFMRKFPSSTSEYTWLVTTSSPTFSTSLEMNEWNHVTVWFEVVKC 1180

[Close]

BLAST of CSPI02G03530 vs. NCBI nr
Match: gi|700205782|gb|KGN60901.1| (hypothetical protein Csa_2G021720 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 2.5e-31
Identity = 71/92 (77.17%), Postives = 80/92 (86.96%), Query Frame = 1


Query: 1   MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
           MNSGIPEWLSY+T S+SIR SFQHNRN + TLATSVTFRVD GDSYQGMALVSCN+FIGC
Sbjct: 33  MNSGIPEWLSYQTTSDSIRVSFQHNRNTERTLATSVTFRVD-GDSYQGMALVSCNIFIGC 92

Query: 61  RLESCHMRKFPTSTLEYTW---LVEAFSTRQS 90
           RL+SC+MRKFPTST EYTW   LV++F+   S
Sbjct: 93  RLKSCYMRKFPTSTSEYTWYKNLVKSFAQEVS 123

The following BLAST results are available for this feature:

BLAST of CSPI02G03530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI02G03530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGA3_CUCSA	5.5e-73	98.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020860 PE=4 SV=1	[more]
A0A0A0LLK3_CUCSA	1.2e-32	65.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1	[more]
A0A0A0LLP7_CUCSA	1.8e-31	77.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021720 PE=4 SV=1	[more]
A0A0A0LLL0_CUCSA	1.4e-15	48.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020940 PE=4 SV=1	[more]
E5GB33_CUCME	2.0e-14	46.53	TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of CSPI02G03530 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI02G03530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205744\|gb\|KGN60863.1\|	7.8e-73	98.59	hypothetical protein Csa_2G020860 [Cucumis sativus]	[more]
gi\|778666709\|ref\|XP_011648797.1\|	1.8e-32	65.14	PREDICTED: TMV resistance protein N-like [Cucumis sativus]	[more]
gi\|700205747\|gb\|KGN60866.1\|	1.8e-32	65.14	hypothetical protein Csa_2G020890 [Cucumis sativus]	[more]
gi\|659070453\|ref\|XP_008455171.1\|	1.5e-31	62.39	PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo]	[more]
gi\|700205782\|gb\|KGN60901.1\|	2.5e-31	77.17	hypothetical protein Csa_2G021720 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0032559	adenyl ribonucleotide binding
molecular_function	GO:0043168	anion binding
molecular_function	GO:0032550	purine ribonucleoside binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043531	ADP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G03530.1	CSPI02G03530.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G03530	Csa2G020860	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G03530	MELO3C004309.2	Melon (DHL92) v3.6.1	cpimedB132
CSPI02G03530	CsaV3_2G004850	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G03530	CmoCh05G011840	Cucurbita moschata (Rifu)	cmocpiB787
CSPI02G03530	Cp4.1LG11g09510	Cucurbita pepo (Zucchini)	cpecpiB100
CSPI02G03530	CsGy2G003640	Cucumber (Gy14) v2	cgybcpiB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G03530	Silver-seed gourd	carcpiB0751
CSPI02G03530	Watermelon (97103) v2	cpiwmbB120
CSPI02G03530	Cucumber (Gy14) v1	cgycpiB097
CSPI02G03530	Cucurbita maxima (Rimu)	cmacpiB174
CSPI02G03530	Cucurbita maxima (Rimu)	cmacpiB800
CSPI02G03530	Cucurbita moschata (Rifu)	cmocpiB159
CSPI02G03530	Melon (DHL92) v3.5.1	cpimeB139
CSPI02G03530	Watermelon (Charleston Gray)	cpiwcgB128
CSPI02G03530	Watermelon (97103) v1	cpiwmB149
CSPI02G03530	Cucurbita pepo (Zucchini)	cpecpiB821
CSPI02G03530	Bottle gourd (USVL1VR-Ls)	cpilsiB096