CmoCh05G011790 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G011790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Disease resistance protein (TIR-NBS-LRR class), putative
Location	Cmo_Chr05 : 9274220 .. 9275434 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAATCATCATCGACTTCTTATCATGTGTTTTTGAGTTTTAGAGGAGAGGATACTCGAACCAATTTTACCAGTCATCTTGTCATGGCTTTGCAGCAAAAGTGTGTCAACGTCTTCATAGATGACAAGCTCGAAAGGGGTGAACAAATTTCTGAATCTCTTTTCCGATCTATAGAGGGAGCTTTGATTTCTATTGTTATATTATCTGAGAATTATGCATCTTCTTCTTGGTGTCTGGATGAATTGGTGAAAATAATCGAATGTAAGAAATCTAAGGATCAGAAAGTTTTGCCAATTTTCTATTACGTGGATCCATCAACTATACGAAAACAAACCGAAACTTTTGGAGAAGCATTAGCCAAACATCAAGCTGAGTTCAAGACGAAAATTCAAATTTGGAGGGAAGCTTTAACTACGGCTGCCAACTTGTCTGGTTGGCATCTCAGACCTAGGTATATATTCTTAATACTAGAGGATTTATTCTATCTCAAGATGCAATTTAACTTGTCATTTTTAACTTTAGTATGATTACGTGCTTAACAACAGGTATGGTAGGAATGAGGCTGATTTTATTCAAGACATTGTTAAACAAGTGTTGTGTATGTTAAAACGCACTTGCACACCCTTATATGAAGAAAGTACAAAGTTACACTCTCAGTCACAACCAAAATGCTCTGATACCAATTGTTGTACTCCAATACCACAACCTAAATGTTCTGATACCAATTGTTGTACCCTAACGCCACAACCAAAATGTTTTGATACTAATTGTTGTACCCCAATGCCACAACCAAAATGCTCTGATACCGATTGTTGTACCCTAATACCACAACCAAAATGTTCTGATACCAATTAATGTAGAGGAAGCGGAAGCAAGATCGATCGTACTCACATATCCACAAACAATTGATTTGTTATCGAATCTTCATTAACTTAGTCTTAATGGATGTTCTAGATTTGAAATGCTTCCCCATAAATTGGGCTCAACAATCCATCCAATATTCTTTTTTTTTCAAGTTATGGAAACTTGGTCGAATTTCTACATTTATCAGTTTCAAAAGAGAGCCTATGTTTTCTCGTTTCAGATGGTTTGGAAATTTTGTGTGATGTCACCCCATCCTTATCTAGTCTATTCTTGTCATAAAACAATTTCTTTCGTCTATCCTCATGTCTCCACAGGTTTACGACCTTGTAGCATCTCCTATTGAGTAA

mRNA sequence

ATGAGAGAATCATCATCGACTTCTTATCATGTGTTTTTGAGTTTTAGAGGAGAGGATACTCGAACCAATTTTACCAGTCATCTTGTCATGGCTTTGCAGCAAAAGTGTGTCAACGTCTTCATAGATGACAAGCTCGAAAGGGGTGAACAAATTTCTGAATCTCTTTTCCGATCTATAGAGGGAGCTTTGATTTCTATTGTTATATTATCTGAGAATTATGCATCTTCTTCTTGGTGTCTGGATGAATTGGTGAAAATAATCGAATGTAAGAAATCTAAGGATCAGAAAGTTTTGCCAATTTTCTATTACGTGGATCCATCAACTATACGAAAACAAACCGAAACTTTTGGAGAAGCATTAGCCAAACATCAAGCTGAGTTCAAGACGAAAATTCAAATTTGGAGGGAAGCTTTAACTACGGCTGCCAACTTGTCTGGTTGGCATCTCAGACCTAGGTATGGTAGGAATGAGGCTGATTTTATTCAAGACATTGTTAAACAAGTTTACGACCTTGTAGCATCTCCTATTGAGTAA

Coding sequence (CDS)

ATGAGAGAATCATCATCGACTTCTTATCATGTGTTTTTGAGTTTTAGAGGAGAGGATACTCGAACCAATTTTACCAGTCATCTTGTCATGGCTTTGCAGCAAAAGTGTGTCAACGTCTTCATAGATGACAAGCTCGAAAGGGGTGAACAAATTTCTGAATCTCTTTTCCGATCTATAGAGGGAGCTTTGATTTCTATTGTTATATTATCTGAGAATTATGCATCTTCTTCTTGGTGTCTGGATGAATTGGTGAAAATAATCGAATGTAAGAAATCTAAGGATCAGAAAGTTTTGCCAATTTTCTATTACGTGGATCCATCAACTATACGAAAACAAACCGAAACTTTTGGAGAAGCATTAGCCAAACATCAAGCTGAGTTCAAGACGAAAATTCAAATTTGGAGGGAAGCTTTAACTACGGCTGCCAACTTGTCTGGTTGGCATCTCAGACCTAGGTATGGTAGGAATGAGGCTGATTTTATTCAAGACATTGTTAAACAAGTTTACGACCTTGTAGCATCTCCTATTGAGTAA

Homology

[Close]

BLAST of CmoCh05G011790 vs. Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-35
Identity = 86/169 (50.89%), Postives = 107/169 (63.31%), Query Frame = 1


Query: 4   SSSTSYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDK-LERGEQISESLFRSIEGA 63
           SS  SY VFLSFRGEDTR  FTSHL   L  K +  F DDK LE G  I   L ++IE +
Sbjct: 7   SSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEES 66

Query: 64  LISIVILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEALAK 123
             +IV+ SENYA+S WCL+ELVKI+ECK    Q V+PIFY VDPS +R Q E+F +A  +
Sbjct: 67  QFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEE 126

Query: 124 HQAEFKTK---IQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQV 169
           H+ ++K     IQ WR AL  AANL G        + +AD I+ IV Q+
Sbjct: 127 HETKYKDDVEGIQRWRIALNEAANLKG--SCDNRDKTDADCIRQIVDQI 173

[Close]

BLAST of CmoCh05G011790 vs. Swiss-Prot
Match: RLM3_ARATH (Disease resistance protein RLM3 OS=Arabidopsis thaliana GN=RLM3 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-34
Identity = 80/176 (45.45%), Postives = 113/176 (64.20%), Query Frame = 1


Query: 1   MRESSSTSYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRSIE 60
           M+ SSS SY VF +FRGED R +  SHL   L +K +N F D+++ER  +I+  L  +IE
Sbjct: 1   MKSSSSQSYDVFPNFRGEDVRHSLVSHLRKELDRKFINTFNDNRIERSRKITPELLLAIE 60

Query: 61  GALISIVILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEAL 120
            + IS+V+ S+NYASS+WCLDELVKI EC +  DQ V+PIFY VDPS +RKQT  FG   
Sbjct: 61  NSRISLVVFSKNYASSTWCLDELVKIQECYEKLDQMVIPIFYKVDPSHVRKQTGEFGMVF 120

Query: 121 AKH-QAEFKTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQVYDLVASP 176
            +  +   + + + W  AL   A+L+G  L  R  R+EA+ +++I K V + +  P
Sbjct: 121 GETCKGRTENEKRKWMRALAEVAHLAGEDL--RNWRSEAEMLENIAKDVSNKLFPP 174

[Close]

BLAST of CmoCh05G011790 vs. Swiss-Prot
Match: Y4117_ARATH (Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.4e-33
Identity = 86/179 (48.04%), Postives = 111/179 (62.01%), Query Frame = 1


Query: 1   MRESSSTS--YHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRS 60
           M  SSS S  Y VF SFRGED R NF SHL+   + K +  F DD ++R   I   L  +
Sbjct: 1   MASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAA 60

Query: 61  IEGALISIVILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGE 120
           I  + IS+V+ SENYASSSWCLDEL++I++CK+ +  KV+P+FY VDPS IRKQT  FG 
Sbjct: 61  IRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGM 120

Query: 121 A-LAKHQAEFKTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQVYD-LVASP 176
           + L     + + +   WR ALT AAN+ G H  P+   NEA  I  I K V + L A+P
Sbjct: 121 SFLETCCGKTEERQHNWRRALTDAANILGDH--PQNWDNEAYKITTISKDVLEKLNATP 177

[Close]

BLAST of CmoCh05G011790 vs. Swiss-Prot
Match: RPP1_ARATH (Probable disease resistance protein RPP1 OS=Arabidopsis thaliana GN=RPP1 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-31
Identity = 72/172 (41.86%), Postives = 111/172 (64.53%), Query Frame = 1


Query: 4   SSSTSYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRSIEGAL 63
           S +  + VF SF G D R  F SH++ + ++K ++ FID+ +ER + I   L  +I+G+ 
Sbjct: 93  SRNWKHDVFPSFHGADVRRTFLSHIMESFRRKGIDTFIDNNIERSKSIGPELKEAIKGSK 152

Query: 64  ISIVILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEALAKH 123
           I+IV+LS  YASSSWCLDEL +I++C++   Q V+ IFY VDP+ I+KQT  FG+A  K 
Sbjct: 153 IAIVLLSRKYASSSWCLDELAEIMKCRQMVGQIVMTIFYEVDPTDIKKQTGEFGKAFTKT 212

Query: 124 -QAEFKTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQVYDLVAS 175
            + + K +++ WR+AL   A ++G+H      RNEAD I+ I   V +++ S
Sbjct: 213 CRGKPKEQVERWRKALEDVATIAGYH--SHSWRNEADMIEKISTDVSNMLNS 262

[Close]

BLAST of CmoCh05G011790 vs. Swiss-Prot
Match: RPS6C_ARATH (Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.4e-31
Identity = 72/167 (43.11%), Postives = 103/167 (61.68%), Query Frame = 1


Query: 4   SSSTSYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRSIEGAL 63
           S + SYHVF SF GED R  F SH +  L +K +  F D+++ER + +   L   I  + 
Sbjct: 9   SRNWSYHVFPSFSGEDVRNTFLSHFLKELDRKLIISFKDNEIERSQSLDPELKHGIRNSR 68

Query: 64  ISIVILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEALAK- 123
           I++V+ S+ YASSSWCL+EL++I++CKK   Q V+PIFY +DPS +RKQT  FG+   K 
Sbjct: 69  IAVVVFSKTYASSSWCLNELLEIVKCKKEFGQLVIPIFYNLDPSHVRKQTGDFGKIFEKT 128

Query: 124 -HQAEFKTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQV 169
                   KI+ W+EALT  AN+ G+H+      NEA  I++I   +
Sbjct: 129 CRNKTVDEKIR-WKEALTDVANILGYHIVT--WDNEASMIEEIANDI 172

[Close]

BLAST of CmoCh05G011790 vs. TrEMBL
Match: E5GB34_CUCME (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 9.8e-64
Identity = 132/161 (81.99%), Postives = 140/161 (86.96%), Query Frame = 1


Query: 8   SYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRSIEGALISIV 67
           SY VFLSFRGEDTRTNFTSHL MAL+QK VNVFIDDKLERGEQISESLF+SI+ ALISIV
Sbjct: 13  SYDVFLSFRGEDTRTNFTSHLDMALRQKGVNVFIDDKLERGEQISESLFKSIQEALISIV 72

Query: 68  ILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEALAKHQAEF 127
           I S+NYASSSWCLDELVKIIECKKSK Q VLPIFY VDPS IRKQ+ TFGEALAKHQA+F
Sbjct: 73  IFSQNYASSSWCLDELVKIIECKKSKGQIVLPIFYKVDPSDIRKQSGTFGEALAKHQAKF 132

Query: 128 KTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQV 169
           +TK QIWREALTTAANLSGW L     R EAD I D+VK V
Sbjct: 133 QTKTQIWREALTTAANLSGWDLGT---RKEADLIGDLVKNV 170

[Close]

BLAST of CmoCh05G011790 vs. TrEMBL
Match: E5GB33_CUCME (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.8e-62
Identity = 127/161 (78.88%), Postives = 141/161 (87.58%), Query Frame = 1


Query: 8   SYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRSIEGALISIV 67
           +Y VFLS+RGEDTRTNFTSHL MAL+QK VNVFIDDKLERG+QISE+L +SI+ ALISI+
Sbjct: 16  NYDVFLSYRGEDTRTNFTSHLDMALRQKGVNVFIDDKLERGKQISETLLKSIQEALISII 75

Query: 68  ILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEALAKHQAEF 127
           I S+NYASSSWCLDELV IIECKKSKDQ VLP+FY VDPS IRKQ+ +FGEALAKHQA+F
Sbjct: 76  IFSQNYASSSWCLDELVNIIECKKSKDQIVLPVFYKVDPSDIRKQSGSFGEALAKHQAKF 135

Query: 128 KTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQV 169
           KTKIQIWREALTTAANLSGW L     R EAD I DIVK+V
Sbjct: 136 KTKIQIWREALTTAANLSGWDLGT---RKEADLIGDIVKKV 173

[Close]

BLAST of CmoCh05G011790 vs. TrEMBL
Match: A0A0A0LLL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020940 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.6e-61
Identity = 125/165 (75.76%), Postives = 139/165 (84.24%), Query Frame = 1


Query: 8   SYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRSIEGALISIV 67
           SY VFLSFRGEDTRTNFTSHL MAL+QK VNVFIDDKLERGEQISESLF+SI+ A ISIV
Sbjct: 16  SYDVFLSFRGEDTRTNFTSHLDMALRQKGVNVFIDDKLERGEQISESLFKSIQEASISIV 75

Query: 68  ILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEALAKHQAEF 127
           I S+NYASSSWCLDELV IIECKKSK Q V P+FY VDPS IRKQT +FGEA+AKHQ +F
Sbjct: 76  IFSQNYASSSWCLDELVNIIECKKSKGQNVFPVFYKVDPSDIRKQTGSFGEAMAKHQPKF 135

Query: 128 KTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQVYDLV 173
           +TK QIWR+ALTTAANLSGW L     R EAD I+D+VK+V   +
Sbjct: 136 QTKTQIWRKALTTAANLSGWDLGAY--RREADLIRDLVKEVLSTI 178

[Close]

BLAST of CmoCh05G011790 vs. TrEMBL
Match: D9I8I4_CUCSA (TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.5e-61
Identity = 125/165 (75.76%), Postives = 140/165 (84.85%), Query Frame = 1


Query: 8   SYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRSIEGALISIV 67
           +Y VFLSFRGEDTRTNFTSHL MAL+QK VNVFID+KLERGEQISESLF+SI+ A ISIV
Sbjct: 46  TYDVFLSFRGEDTRTNFTSHLDMALRQKGVNVFIDNKLERGEQISESLFKSIQEASISIV 105

Query: 68  ILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEALAKHQAEF 127
           I S+NYASSSWCLDELV IIECKKSK Q V P+FY VDPS IRKQT +FGEALAKHQ +F
Sbjct: 106 IFSQNYASSSWCLDELVNIIECKKSKGQNVFPVFYKVDPSDIRKQTGSFGEALAKHQPKF 165

Query: 128 KTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQVYDLV 173
           +TK QIWREALTTAANLSGW+L     R EAD I D+VK+V  ++
Sbjct: 166 QTKTQIWREALTTAANLSGWNLGT---RKEADLIGDLVKKVLSVL 207

[Close]

BLAST of CmoCh05G011790 vs. TrEMBL
Match: E7CHD3_CUCSA (Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.5e-61
Identity = 125/165 (75.76%), Postives = 140/165 (84.85%), Query Frame = 1


Query: 8   SYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRSIEGALISIV 67
           +Y VFLSFRGEDTRTNFTSHL MAL+QK VNVFI+DKLERGEQISESLF+SI+ A ISIV
Sbjct: 16  TYDVFLSFRGEDTRTNFTSHLDMALRQKGVNVFINDKLERGEQISESLFKSIQEASISIV 75

Query: 68  ILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEALAKHQAEF 127
           I S+NYASSSWCLDELV IIECKKSK Q V P+FY VDPS IRKQT +FGEALAKHQ +F
Sbjct: 76  IFSQNYASSSWCLDELVNIIECKKSKGQNVFPVFYKVDPSDIRKQTGSFGEALAKHQPKF 135

Query: 128 KTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQVYDLV 173
           +TK QIWREALTTAANLSGW+L     R EAD I D+VK+V  ++
Sbjct: 136 QTKTQIWREALTTAANLSGWNLGT---RKEADLIGDLVKKVLSVL 177

[Close]

BLAST of CmoCh05G011790 vs. TAIR10
Match: AT4G16990.2 (AT4G16990.2 disease resistance protein (TIR-NBS class), putative)

HSP 1 Score: 147.9 bits (372), Expect = 5.9e-36
Identity = 80/176 (45.45%), Postives = 113/176 (64.20%), Query Frame = 1


Query: 1   MRESSSTSYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRSIE 60
           M+ SSS SY VF +FRGED R +  SHL   L +K +N F D+++ER  +I+  L  +IE
Sbjct: 1   MKSSSSQSYDVFPNFRGEDVRHSLVSHLRKELDRKFINTFNDNRIERSRKITPELLLAIE 60

Query: 61  GALISIVILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEAL 120
            + IS+V+ S+NYASS+WCLDELVKI EC +  DQ V+PIFY VDPS +RKQT  FG   
Sbjct: 61  NSRISLVVFSKNYASSTWCLDELVKIQECYEKLDQMVIPIFYKVDPSHVRKQTGEFGMVF 120

Query: 121 AKH-QAEFKTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQVYDLVASP 176
            +  +   + + + W  AL   A+L+G  L  R  R+EA+ +++I K V + +  P
Sbjct: 121 GETCKGRTENEKRKWMRALAEVAHLAGEDL--RNWRSEAEMLENIAKDVSNKLFPP 174

[Close]

BLAST of CmoCh05G011790 vs. TAIR10
Match: AT5G36930.2 (AT5G36930.2 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 144.1 bits (362), Expect = 8.5e-35
Identity = 77/164 (46.95%), Postives = 112/164 (68.29%), Query Frame = 1


Query: 8   SYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDD-KLERGEQISESLFRSIEGALISI 67
           +Y VF+SFRG D R NF SHL  +L++  ++ F+DD +L+RGE IS  L  +IE + I I
Sbjct: 16  TYDVFVSFRGADVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPELLNAIETSKILI 75

Query: 68  VILSENYASSSWCLDELVKIIEC-KKSKDQKVLPIFYYVDPSTIRKQTETFGEALAKHQA 127
           V+L+++YASS+WCLDELV I++  K +    V PIF YVDPS IR Q  ++ ++ +KH+ 
Sbjct: 76  VVLTKDYASSAWCLDELVHIMKSHKNNPSHMVFPIFLYVDPSDIRWQQGSYAKSFSKHKN 135

Query: 128 EFK-TKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQV 169
                K++ WREALT  AN+SGW ++    RNEA+ I DI +++
Sbjct: 136 SHPLNKLKDWREALTKVANISGWDIK---NRNEAECIADITREI 176

[Close]

BLAST of CmoCh05G011790 vs. TAIR10
Match: AT4G11170.1 (AT4G11170.1 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-34
Identity = 86/179 (48.04%), Postives = 111/179 (62.01%), Query Frame = 1


Query: 1   MRESSSTS--YHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRS 60
           M  SSS S  Y VF SFRGED R NF SHL+   + K +  F DD ++R   I   L  +
Sbjct: 1   MASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAA 60

Query: 61  IEGALISIVILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGE 120
           I  + IS+V+ SENYASSSWCLDEL++I++CK+ +  KV+P+FY VDPS IRKQT  FG 
Sbjct: 61  IRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGM 120

Query: 121 A-LAKHQAEFKTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQVYD-LVASP 176
           + L     + + +   WR ALT AAN+ G H  P+   NEA  I  I K V + L A+P
Sbjct: 121 SFLETCCGKTEERQHNWRRALTDAANILGDH--PQNWDNEAYKITTISKDVLEKLNATP 177

[Close]

BLAST of CmoCh05G011790 vs. TAIR10
Match: AT1G27170.1 (AT1G27170.1 transmembrane receptors;ATP binding)

HSP 1 Score: 141.4 bits (355), Expect = 5.5e-34
Identity = 76/164 (46.34%), Postives = 107/164 (65.24%), Query Frame = 1


Query: 9   YHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDK-LERGEQISESLFRSIEGALISIV 68
           Y VFLSFRG DTR NF  HL  AL+ K V VF D++ +ERG++IS SL   +E +  S++
Sbjct: 14  YDVFLSFRGADTRDNFGDHLYKALKDK-VRVFRDNEGMERGDEISSSLKAGMEDSAASVI 73

Query: 69  ILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEALAKHQAEF 128
           ++S NY+ S WCLDEL  + + K S D+++LPIFY+VDPS +RKQ++   +   +HQ  F
Sbjct: 74  VISRNYSGSRWCLDELAMLCKMKSSLDRRILPIFYHVDPSHVRKQSDHIKKDFEEHQVRF 133

Query: 129 ---KTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQV 169
              K K+Q WREALT   NL+G+         + D I+ +VK+V
Sbjct: 134 SEEKEKVQEWREALTLVGNLAGYVCDK--DSKDDDMIELVVKRV 174

[Close]

BLAST of CmoCh05G011790 vs. TAIR10
Match: AT3G44670.1 (AT3G44670.1 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 140.6 bits (353), Expect = 9.4e-34
Identity = 73/167 (43.71%), Postives = 110/167 (65.87%), Query Frame = 1


Query: 9   YHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRSIEGALISIVI 68
           +HVF SF G D R    SH++ + ++K ++ FID+ +ER + I   L  +I+G+ I+IV+
Sbjct: 94  HHVFPSFHGADVRKTILSHILESFRRKGIDPFIDNNIERSKSIGHELKEAIKGSKIAIVL 153

Query: 69  LSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEALAKH-QAEF 128
           LS+NYASSSWCLDEL +I++C++   Q V+ IFY VDP+ I+KQT  FG+A  K  + + 
Sbjct: 154 LSKNYASSSWCLDELAEIMKCRELLGQIVMTIFYEVDPTDIKKQTGEFGKAFTKTCKGKT 213

Query: 129 KTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQVYDLVAS 175
           K  ++ WR+AL   A ++G H   R  RNEAD I+ I   V +++ S
Sbjct: 214 KEYVERWRKALEDVATIAGEH--SRNWRNEADMIEKIATDVSNMLNS 258

[Close]

BLAST of CmoCh05G011790 vs. NCBI nr
Match: gi|659070337|ref|XP_008454622.1| (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 251.1 bits (640), Expect = 1.4e-63
Identity = 132/161 (81.99%), Postives = 140/161 (86.96%), Query Frame = 1


Query: 8   SYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRSIEGALISIV 67
           SY VFLSFRGEDTRTNFTSHL MAL+QK VNVFIDDKLERGEQISESLF+SI+ ALISIV
Sbjct: 38  SYDVFLSFRGEDTRTNFTSHLDMALRQKGVNVFIDDKLERGEQISESLFKSIQEALISIV 97

Query: 68  ILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEALAKHQAEF 127
           I S+NYASSSWCLDELVKIIECKKSK Q VLPIFY VDPS IRKQ+ TFGEALAKHQA+F
Sbjct: 98  IFSQNYASSSWCLDELVKIIECKKSKGQIVLPIFYKVDPSDIRKQSGTFGEALAKHQAKF 157

Query: 128 KTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQV 169
           +TK QIWREALTTAANLSGW L     R EAD I D+VK V
Sbjct: 158 QTKTQIWREALTTAANLSGWDLGT---RKEADLIGDLVKNV 195

[Close]

BLAST of CmoCh05G011790 vs. NCBI nr
Match: gi|307135797|gb|ADN33676.1| (TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 251.1 bits (640), Expect = 1.4e-63
Identity = 132/161 (81.99%), Postives = 140/161 (86.96%), Query Frame = 1


Query: 8   SYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRSIEGALISIV 67
           SY VFLSFRGEDTRTNFTSHL MAL+QK VNVFIDDKLERGEQISESLF+SI+ ALISIV
Sbjct: 13  SYDVFLSFRGEDTRTNFTSHLDMALRQKGVNVFIDDKLERGEQISESLFKSIQEALISIV 72

Query: 68  ILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEALAKHQAEF 127
           I S+NYASSSWCLDELVKIIECKKSK Q VLPIFY VDPS IRKQ+ TFGEALAKHQA+F
Sbjct: 73  IFSQNYASSSWCLDELVKIIECKKSKGQIVLPIFYKVDPSDIRKQSGTFGEALAKHQAKF 132

Query: 128 KTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQV 169
           +TK QIWREALTTAANLSGW L     R EAD I D+VK V
Sbjct: 133 QTKTQIWREALTTAANLSGWDLGT---RKEADLIGDLVKNV 170

[Close]

BLAST of CmoCh05G011790 vs. NCBI nr
Match: gi|307135796|gb|ADN33675.1| (TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 246.9 bits (629), Expect = 2.6e-62
Identity = 127/161 (78.88%), Postives = 141/161 (87.58%), Query Frame = 1


Query: 8   SYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRSIEGALISIV 67
           +Y VFLS+RGEDTRTNFTSHL MAL+QK VNVFIDDKLERG+QISE+L +SI+ ALISI+
Sbjct: 16  NYDVFLSYRGEDTRTNFTSHLDMALRQKGVNVFIDDKLERGKQISETLLKSIQEALISII 75

Query: 68  ILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEALAKHQAEF 127
           I S+NYASSSWCLDELV IIECKKSKDQ VLP+FY VDPS IRKQ+ +FGEALAKHQA+F
Sbjct: 76  IFSQNYASSSWCLDELVNIIECKKSKDQIVLPVFYKVDPSDIRKQSGSFGEALAKHQAKF 135

Query: 128 KTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQV 169
           KTKIQIWREALTTAANLSGW L     R EAD I DIVK+V
Sbjct: 136 KTKIQIWREALTTAANLSGWDLGT---RKEADLIGDIVKKV 173

[Close]

BLAST of CmoCh05G011790 vs. NCBI nr
Match: gi|778666722|ref|XP_011648798.1| (PREDICTED: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 2.2e-61
Identity = 125/165 (75.76%), Postives = 139/165 (84.24%), Query Frame = 1


Query: 8   SYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRSIEGALISIV 67
           SY VFLSFRGEDTRTNFTSHL MAL+QK VNVFIDDKLERGEQISESLF+SI+ A ISIV
Sbjct: 16  SYDVFLSFRGEDTRTNFTSHLDMALRQKGVNVFIDDKLERGEQISESLFKSIQEASISIV 75

Query: 68  ILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEALAKHQAEF 127
           I S+NYASSSWCLDELV IIECKKSK Q V P+FY VDPS IRKQT +FGEA+AKHQ +F
Sbjct: 76  IFSQNYASSSWCLDELVNIIECKKSKGQNVFPVFYKVDPSDIRKQTGSFGEAMAKHQPKF 135

Query: 128 KTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQVYDLV 173
           +TK QIWR+ALTTAANLSGW L     R EAD I+D+VK+V   +
Sbjct: 136 QTKTQIWRKALTTAANLSGWDLGAY--RREADLIRDLVKEVLSTI 178

[Close]

BLAST of CmoCh05G011790 vs. NCBI nr
Match: gi|778666836|ref|XP_011648823.1| (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 5.0e-61
Identity = 125/165 (75.76%), Postives = 140/165 (84.85%), Query Frame = 1


Query: 8   SYHVFLSFRGEDTRTNFTSHLVMALQQKCVNVFIDDKLERGEQISESLFRSIEGALISIV 67
           +Y VFLSFRGEDTRTNFTSHL MAL+QK VNVFI+DKLERGEQISESLF+SI+ A ISIV
Sbjct: 16  TYDVFLSFRGEDTRTNFTSHLDMALRQKGVNVFINDKLERGEQISESLFKSIQEASISIV 75

Query: 68  ILSENYASSSWCLDELVKIIECKKSKDQKVLPIFYYVDPSTIRKQTETFGEALAKHQAEF 127
           I S+NYASSSWCLDELV IIECKKSK Q V P+FY VDPS IRKQT +FGEALAKHQ +F
Sbjct: 76  IFSQNYASSSWCLDELVNIIECKKSKGQNVFPVFYKVDPSDIRKQTGSFGEALAKHQPKF 135

Query: 128 KTKIQIWREALTTAANLSGWHLRPRYGRNEADFIQDIVKQVYDLV 173
           +TK QIWREALTTAANLSGW+L     R EAD I D+VK+V  ++
Sbjct: 136 QTKTQIWREALTTAANLSGWNLGT---RKEADLIGDLVKKVLSVL 177

The following BLAST results are available for this feature:

BLAST of CmoCh05G011790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TMVRN_NICGU	2.1e-35	50.89	TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1	[more]
RLM3_ARATH	1.0e-34	45.45	Disease resistance protein RLM3 OS=Arabidopsis thaliana GN=RLM3 PE=2 SV=1	[more]
Y4117_ARATH	3.4e-33	48.04	Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g111...	[more]
RPP1_ARATH	1.4e-31	41.86	Probable disease resistance protein RPP1 OS=Arabidopsis thaliana GN=RPP1 PE=2 SV...	[more]
RPS6C_ARATH	2.4e-31	43.11	Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1	[more]

BLAST of CmoCh05G011790 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB34_CUCME	9.8e-64	81.99	TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GB33_CUCME	1.8e-62	78.88	TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LLL0_CUCSA	1.6e-61	75.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020940 PE=4 SV=1	[more]
D9I8I4_CUCSA	3.5e-61	75.76	TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1	[more]
E7CHD3_CUCSA	3.5e-61	75.76	Putative TIR-NBS-LRR-AAA+ATPase OS=Cucumis sativus PE=4 SV=1	[more]

BLAST of CmoCh05G011790 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16990.2	5.9e-36	45.45	disease resistance protein (TIR-NBS class), putative	[more]
AT5G36930.2	8.5e-35	46.95	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT4G11170.1	1.9e-34	48.04	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT1G27170.1	5.5e-34	46.34	transmembrane receptors;ATP binding	[more]
AT3G44670.1	9.4e-34	43.71	Disease resistance protein (TIR-NBS-LRR class) family	[more]

BLAST of CmoCh05G011790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070337\|ref\|XP_008454622.1\|	1.4e-63	81.99	PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo]	[more]
gi\|307135797\|gb\|ADN33676.1\|	1.4e-63	81.99	TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo]	[more]
gi\|307135796\|gb\|ADN33675.1\|	2.6e-62	78.88	TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo]	[more]
gi\|778666722\|ref\|XP_011648798.1\|	2.2e-61	75.76	PREDICTED: TMV resistance protein N-like [Cucumis sativus]	[more]
gi\|778666836\|ref\|XP_011648823.1\|	5.0e-61	75.76	PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000157	TIR_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G011790.1	CmoCh05G011790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	GENE3D	G3DSA:3.40.50.10140		coord: 6..124 score: 8.8
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	PFAM	PF01582	TIR	coord: 9..168 score: 2.9
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	SMART	SM00255	till_3	coord: 8..144 score: 3.9
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	PROFILE	PS50104	TIR	coord: 7..144 score: 26
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	unknown	SSF52200	Toll/Interleukin receptor TIR domain	coord: 4..147 score: 1.14
None	No IPR available	PANTHER	PTHR11017	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	coord: 1..168 score: 2.9
None	No IPR available	PANTHER	PTHR11017:SF162	SUBFAMILY NOT NAMED	coord: 1..168 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G011790	CmaCh05G011620	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G011790	Csa2G021530	Cucumber (Chinese Long) v2	cmocuB782

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G011790	Wild cucumber (PI 183967)	cmocpiB787
CmoCh05G011790	Cucumber (Chinese Long) v2	cmocuB783
CmoCh05G011790	Melon (DHL92) v3.5.1	cmomeB724
CmoCh05G011790	Watermelon (Charleston Gray)	cmowcgB700
CmoCh05G011790	Watermelon (97103) v1	cmowmB757
CmoCh05G011790	Cucurbita pepo (Zucchini)	cmocpeB721
CmoCh05G011790	Cucurbita pepo (Zucchini)	cmocpeB742
CmoCh05G011790	Bottle gourd (USVL1VR-Ls)	cmolsiB706
CmoCh05G011790	Cucumber (Gy14) v2	cgybcmoB243
CmoCh05G011790	Melon (DHL92) v3.6.1	cmomedB821
CmoCh05G011790	Silver-seed gourd	carcmoB0974
CmoCh05G011790	Cucumber (Chinese Long) v3	cmocucB0924
CmoCh05G011790	Watermelon (97103) v2	cmowmbB785
CmoCh05G011790	Cucurbita moschata (Rifu)	cmocmoB148
CmoCh05G011790	Cucumber (Gy14) v1	cgycmoB0179
CmoCh05G011790	Cucurbita maxima (Rimu)	cmacmoB190