CmoCh05G009110 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G009110
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTIR-NBS-LRR disease resistance protein
LocationCmo_Chr05 : 7011803 .. 7013311 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATATTATTCCTTGTTATTCTTTGTTATTCTTTTGGCAAGCTTGTTATGTTAGACCTTCATTAATCAAACTTTAAAAATCTTCCAAGCTATCTCAAGTTGTTTTGGTAAGCTTGTTATCTTAGACCTTCACTAATCAAACTTTAAAAAACTTCCAAGCTACCTCATGTTGAAATCTCTTACAGTTTTGAAGCTTAGCACTGAAAGAGAAGGAAAAAAAAACTCGAGAAACTTTAAAACTAATATGAAGTATTAAACCTTGAAAACTTGTATCTCAATAACCGTACAAATTTAAGAGTGATTCATGGATCTATGAATGAACGTGTTACCTTGAACCTTGAAAAATGCTCTAACCTTGAAAGACTTCTAAGCTACCTTACACTTAATTCTCTTAAATATTTGAATTTCGCTCTTTCCAAGAATCTTGAAGAGATTTCTAATTTTTCTATTGTCTTAAATCTTAAAAGTTAATATTTTGAAAATTGCAAAGTGATTATGAATCTATGGGATCTTTTATAGTCTTGTACCTTGAACCTCAAACAATGCACTAAACTCGAAATGTTTCCAACAATTGTTGAAAACATGAAATCGTTAGTATTCTTGCATTTGGATTATACCGTCATAAAGGAACTACCTTCATCAATTGAAAATTTTATTGGGCTCGTAAAATTAAACCTCGACGGTTGCACAAACTTCATCTCCGTTCCTAGTACAATTTATTTCTTACAAAATCTTCAAGAACTTCGTCTTGGTGGTTGGTCTAGATTTGAAATGCTTCCCCATAGATGGGACTAACCCATCCATATTATGCTTTTCTTCAAATCAATGAAACTTACCCAAAAACCCTATGTTTTCTGTTGACTTTGTTGGAGGTTCCATATTGCAACATAGATTTCTGGAAAATTTTATGTGATGCCAACCTTTATCAAATAGTATAGTCTTGTCGGGAAACAAATTTGTAGTCTACCCTCATGTCTTCATAAGTTTATGTCCTTGAGGAATTGCAAGTTTCTTCGAAAAATTCTAAACCTTTCTCAGCGTATGAAAAAAATGGATGTCAGTGGTTGTGAATCGTTGGTTAGAAGTCTAGACAACGTTTTGGATATAATATCAAGCAAGCAGGTTCATCTCTTCTCATTCCATTTCTCTTTGTTCATATTGTATTTTTCTCTCTCGTTAATATTTCCATGCATGTTAATTCTTATGTCATAGGACATTACACTGGGTAACTTTCCTAGAGAGATTCTTCTAGTGAACAGAGACATTGCATAATGGTTTAACCACCAAACTATATCAAATTCGATGAAGGTTAGCTTTCTACATGATCACAATATAGAAAGAACTTTGGCTACCTATGCTAAATTTAGAGTGCATGGAGATTCATATCAAGGGGAAGCCTTAATTTCATTGAACATATTCATAGGCTCCATCATCAACATCAGAATATAGGTGGTTAGTAACAACTTCTTCTCCAACATTTAGTAGCTCCTTAGTGGCGAATGATTGA

mRNA sequence

ATGGCATATTATTCCTTTCTACCCTCATGTCTTCATAAGTTTATGTCCTTGAGGAATTGCAAGTTTCTTCGAAAAATTCTAAACCTTTCTCAGCGTATGAAAAAAATGGATGTCAGTGGTTGTGAATCGTTGGTTAGAAGTCTAGACAACGTTTTGGATATAATATCAAGCAAGCAGGCTCCATCATCAACATCAGAATATAGGTGGTTAGTAACAACTTCTTCTCCAACATTTAGTAGCTCCTTAGTGGCGAATGATTGA

Coding sequence (CDS)

ATGGCATATTATTCCTTTCTACCCTCATGTCTTCATAAGTTTATGTCCTTGAGGAATTGCAAGTTTCTTCGAAAAATTCTAAACCTTTCTCAGCGTATGAAAAAAATGGATGTCAGTGGTTGTGAATCGTTGGTTAGAAGTCTAGACAACGTTTTGGATATAATATCAAGCAAGCAGGCTCCATCATCAACATCAGAATATAGGTGGTTAGTAACAACTTCTTCTCCAACATTTAGTAGCTCCTTAGTGGCGAATGATTGA
Homology
[Close]
BLAST of CmoCh05G009110 vs. TrEMBL
Match: A6YTE0_CUCME (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-11
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 1 

Query: 4   YSFLPSCLHKFMSL-----RNCKFLRKILNLSQRMKKMDVSGCESLVRSLDNVLDIISSK 60
           +S LPSCLHKFMSL     +NCKFL++I NL + ++KMD SGCESLVRS +N++DIIS K
Sbjct: 884 FSSLPSCLHKFMSLWNLELKNCKFLQEIPNLPKNIQKMDASGCESLVRSPNNIVDIISKK 943

[Close]
BLAST of CmoCh05G009110 vs. TrEMBL
Match: A0A0A0LLL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020940 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.0e-11
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1 

Query: 4    YSFLPSCLHKFMS-----LRNCKFLRKILNLSQRMKKMDVSGCESLVRSLDNVLDIISSK 60
            +S LPSCLHKFMS     LRNCKFL++I NL Q ++ +D SGC+SL RS DN++DIIS K
Sbjct: 944  FSSLPSCLHKFMSLSNLELRNCKFLQEIPNLPQNIRNLDASGCKSLARSPDNIVDIISIK 1003

[Close]
BLAST of CmoCh05G009110 vs. TrEMBL
Match: E5GB33_CUCME (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-10
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1 

Query: 4    YSFLPSCLHKFMS-----LRNCKFLRKILNLSQRMKKMDVSGCESLVRSLDNVLDIISSK 60
            +S LPSCLHKFMS     L+NCKFL++I NL Q ++ +D SGC+SL RS DN++DIIS K
Sbjct: 1012 FSSLPSCLHKFMSLWNLELKNCKFLQEIPNLPQNIQNLDASGCKSLARSPDNIMDIISIK 1071

[Close]
BLAST of CmoCh05G009110 vs. TrEMBL
Match: A0A0A0LJM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.2e-10
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1 

Query: 4   YSFLPSCLHKFMS-----LRNCKFLRKILNLSQRMKKMDVSGCESLVRSLDNVLDIISSK 60
           +S LPSCLHKFMS     LRNCKFL++I +L + ++KMD  GCESL R  DN++DIIS K
Sbjct: 904 FSSLPSCLHKFMSLSNLELRNCKFLQEIPSLPESIQKMDACGCESLARIPDNIVDIISKK 963

[Close]
BLAST of CmoCh05G009110 vs. TrEMBL
Match: D9I8I4_CUCSA (TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.8e-10
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 1 

Query: 4   YSFLPSCLHKFMS-----LRNCKFLRKILNLSQRMKKMDVSGCESLVRSLDNVLDIISSK 60
           +S LPSCLHKFMS     LRNCKFL++I +L + ++KMD  GCESL R  DN++DIIS K
Sbjct: 912 FSSLPSCLHKFMSLWNLELRNCKFLQEIPSLPESIQKMDACGCESLSRIPDNIVDIISKK 971

[Close]
BLAST of CmoCh05G009110 vs. NCBI nr
Match: gi|659070451|ref|XP_008455159.1| (PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1 

Query: 4   YSFLPSCLHKFMS-----LRNCKFLRKILNLSQRMKKMDVSGCESLVRSLDNVLDIISSK 60
           +S LPSCLHKFMS     LRNCKFL++I NL + ++KMD SGCESL R+ DN++DIIS K
Sbjct: 782 FSSLPSCLHKFMSLWNLELRNCKFLQEIPNLPENIQKMDASGCESLARNPDNIVDIISKK 841

[Close]
BLAST of CmoCh05G009110 vs. NCBI nr
Match: gi|659070449|ref|XP_008455151.1| (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1 

Query: 4    YSFLPSCLHKFMS-----LRNCKFLRKILNLSQRMKKMDVSGCESLVRSLDNVLDIISSK 60
            +S LPSCLHKFMS     LRNCKFL++I NL + ++KMD SGCESL R+ DN++DIIS K
Sbjct: 969  FSSLPSCLHKFMSLWNLELRNCKFLQEIPNLPENIQKMDASGCESLARNPDNIVDIISKK 1028

[Close]
BLAST of CmoCh05G009110 vs. NCBI nr
Match: gi|311992493|gb|ABR67409.2| (TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-11
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 1 

Query: 4   YSFLPSCLHKFMSL-----RNCKFLRKILNLSQRMKKMDVSGCESLVRSLDNVLDIISSK 60
           +S LPSCLHKFMSL     +NCKFL++I NL + ++KMD SGCESLVRS +N++DIIS K
Sbjct: 884 FSSLPSCLHKFMSLWNLELKNCKFLQEIPNLPKNIQKMDASGCESLVRSPNNIVDIISKK 943

[Close]
BLAST of CmoCh05G009110 vs. NCBI nr
Match: gi|659071574|ref|XP_008460703.1| (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 3.0e-11
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 1 

Query: 4    YSFLPSCLHKFMSL-----RNCKFLRKILNLSQRMKKMDVSGCESLVRSLDNVLDIISSK 60
            +S LPSCLHKFMSL     +NCKFL++I NL + ++KMD SGCESLVRS +N++DIIS K
Sbjct: 943  FSSLPSCLHKFMSLWNLELKNCKFLQEIPNLPKNIQKMDASGCESLVRSPNNIVDIISKK 1002

[Close]
BLAST of CmoCh05G009110 vs. NCBI nr
Match: gi|778666722|ref|XP_011648798.1| (PREDICTED: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 1 

Query: 4    YSFLPSCLHKFMS-----LRNCKFLRKILNLSQRMKKMDVSGCESLVRSLDNVLDIISSK 60
            +S LPSCLHKFMS     LRNCKFL++I NL Q ++ +D SGC+SL RS DN++DIIS K
Sbjct: 944  FSSLPSCLHKFMSLSNLELRNCKFLQEIPNLPQNIRNLDASGCKSLARSPDNIVDIISIK 1003

The following BLAST results are available for this feature:
BLAST of CmoCh05G009110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh05G009110 vs. TrEMBL
Match NameE-valueIdentityDescription
A6YTE0_CUCME2.1e-1163.93TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=2[more]
A0A0A0LLL0_CUCSA8.0e-1162.30Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020940 PE=4 SV=1[more]
E5GB33_CUCME1.8e-1060.66TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0LJM0_CUCSA5.2e-1060.66Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1[more]
D9I8I4_CUCSA8.8e-1060.66TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1[more]
BLAST of CmoCh05G009110 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh05G009110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659070451|ref|XP_008455159.1|1.8e-1163.93PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo][more]
gi|659070449|ref|XP_008455151.1|1.8e-1163.93PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo][more]
gi|311992493|gb|ABR67409.2|3.0e-1163.93TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo][more]
gi|659071574|ref|XP_008460703.1|3.0e-1163.93PREDICTED: TMV resistance protein N-like [Cucumis melo][more]
gi|778666722|ref|XP_011648798.1|1.1e-1062.30PREDICTED: TMV resistance protein N-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0005575 cellular_component
molecular_function GO:0043531 ADP binding
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G009110.1CmoCh05G009110.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh05G009110Cp4.1LG11g07360Cucurbita pepo (Zucchini)cmocpeB726
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G009110Cucurbita moschata (Rifu)cmocmoB157
CmoCh05G009110Cucurbita maxima (Rimu)cmacmoB197
CmoCh05G009110Cucurbita maxima (Rimu)cmacmoB201
CmoCh05G009110Cucurbita maxima (Rimu)cmacmoB787
CmoCh05G009110Wild cucumber (PI 183967)cmocpiB799
CmoCh05G009110Watermelon (Charleston Gray)cmowcgB686
CmoCh05G009110Watermelon (97103) v1cmowmB743
CmoCh05G009110Cucurbita pepo (Zucchini)cmocpeB753
CmoCh05G009110Watermelon (97103) v2cmowmbB803