CmoCh05G006730 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G006730
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPsbP domain-containing protein 5
LocationCmo_Chr05 : 3415293 .. 3418857 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTTCTCAATTCCTCTCTATCTGTTTCTACTCCCACCAACGCTTCTCTTCCAAATCTGTCCTTCTTCAGGTTCTTCATTTTCTTTTTACTATCTTACAATCAATAAATTGCTTCTTATCCACTGAAACTCATTCCTAAATTCTTCTCTAATTCGCAGCAATCGACCTAGAAACTTGCCCTCTCGGAAAATAATTGGAATGTACAAGAAATTGAGTCTCTGTTCGACTTCAATCTCAAAATCCACCTCAGAAAATGTGTTTTCCAGAAGGGATTTGTTGCTATTTGGGCTTTCTTCTTCGTTTGTTCTGACATTTCCATCATTAGGTCAGTTTTTCTTGCTGTGGTTCGCTTATTTTTCTGCTTCTCCTCTGTTGAAAAATGATCCATAGGTTAATTTCGTGATGGAATAGCTTGAGGTTTGAGATGGATGAAGAGATAACGCTTTGATTTCAGGTTCTCTTGCGGAGGAACAGTTGAAGGCTGCTACAATGGTCGACGAAGTAAATGCTTATTCTTATATTTATCCACTGGAATTGCCGTCTACTAATTTCGCCTTCAAATGGTAGAGCTTTCTGTTGAAACTTTTGACTGTGTTTTCTTTGGTTATGCCTCATTCTTTTGATAAACTTAAATTGAAACTACAGATTGTTGTTCTGAACGTTCTACTTGACCCTTCAAGAATCTATACCTTAGATTTCATTTCCTTCCCAAAATTTTGGTAATCTTTCGTGGAAAAGAAAGTTGCAGCAGAAGTTTTTTGATGGGTAAAACATCAATTGATTAGGTGTTTTTTCTGTCTAGACAATGATTTTTCACGCAGTCATACCATGTTTCTTTAAGATTTTCCACTTGGAATGGGGCTTATATGTGCACACCTTAACCTACAATAAGAAGAGGTGAAAGAGTGAGTAAGTAGCGAGAGGATCAAGATCCGTTCAAGAATAAATAGGTGATTGAAGGTCAGGTAATATCGGTTCAGGAGAATGACTCTTTCGTCTTGGCTTCCTGTTCTGTTTCATTCTTGTTGAGTCTTTCCTTCCTGTTCAGGAGTTTACTGCGAAAGAAGAAATAGGGACAATAGCTTTCCCTTGTTTGCTTACTGTTCAAACTTGTTTGTTTGGAACAACTTTCTAAGTGTTCTCAAACGTTTGGAAAGTCATGGAAAGTTATTCTAGACAGACCCCAAGTCTCCTTTGTTTCTGAACATGCATATGTAATCTAAATTTGAAAGCGCCGCTTTACCCTGAAAGGAAAATGAGCTTTGCTCCTCTAGGCTCCCAGCGCTCTCATGGTTCCCGAGAAGGAAAAAGAACTCATCCTTCAGCATGAGAAGATAAAAAGAGAGCTTCGTCTATTGATGAACAGTGGATTGATGGAACGCACGACTAATGTGGCTACTAAGCTATTTCTTTGGAAAGCTCCTACTGAGATGGGAAATTCCCTGATAAAGCATTTAATGTACTATAATCTATGAAGGATGAGATTTAAGTTATGTGATGTCCCACATTGGTCGGGGAGGAGAACAAAACACCCTTTATAAGGGTGTGGAAACCTTCTCCTAGCATATGCGTTTTAAAGCCAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACGATATCTGCTAGCGGTGGATTTGGGTCGTTACAAGTTCACTAGCAATATGAAGTCCTTTGGATAGTCAATGAAAACTCTGAATTTAGTTGGGAAACAATTTCTATATATTCTTTATTATTGAGTGTTTTTGGCTTTTAGGTTTCACTTTTCTTGTTCTATTGAACTTCTTTTTGACATTTCCTTAAGTTTTTTTCCTTCTTTCCATCATTGTTTCATGTCCTTAAATTGTATGATACATAATTCCTTATCTTTTCAAGGGTGGAATCAAGAAAACCCGAACGTTATTCTTCGGCTGCTCCACTGTCTCGTAAGATTAAGAAACATAGTTTGTTCTTTGAGCAACTTGAATTATTTAGATTTTCTTCATATTAACTTCATTGGGTTTGCACACGTCGTAGCTGATGCACGATTGAGGATTGTCTCTGAGCGAGTTGATTTCATCGACAACCTTATCATATCGGTTACGGTAATTTCTTGTTCAATTTGATATCAGTTATTTCATTCTCTTTTTAGGTTGATAGTTTTTATCATCTTTTTTGTTTCAGATAGGCCCTCCAAATTCCATGTATATAAAATCAAAGGACAAGAGTACTTGGACAGCAAAAGATGTTGCAGACTCTGTTTTATCCGACAAATCTGCATTGGTAATAGTTTCTTGCTTTTTACCCCCAAATATTTGGACAAAGCTTCATTTGAATTCATGTTCTTGTTCGTCTTGCAGCGGGTCACTTCGAGTCAGCGCCTGGCTGAGAGTTCAGTCCTAGATACTCATTCAAGTAATGTAAGTAAACTATGAAGTCCTGTTGTTAGGTTCTGTATATATGTCGCCTGGCCGAGAGCGTTTATAATAGTCCTCTGGCTCTCTCAGATTGATGGTGAGCCATACTGGTATTATGAGTACCTTGTTCGAAAGTCGCCAACAAAAATCGTATGTCTCGTCTTTCTGATCGCCATGTTTCCTCTCAGTAGAAAACATTACAAATATTTGATTATTTGAGGACTCTAATGAATCGTGCAGGTCGGAGAATCCAACATTTACAGGCATTATGTTGCATCGACCGCAGAACGAGATGGTAAGTTCTTGATTCCTAGTCTGCATTCTGTCGACAAGTTATAAATGGGTAAAAAACTTGCTATAGCATAACCTCATCTTGTCACCTGCAAAGCATATTACAATTTTCTTCTTGAAAACTGGTGCATCAGAGGTATATTCGTTGCATTATGCTTATAGCTCACTTTTCGGAAGCTTCGTCCACTCAAAAGTCAACTTTAAACGACGATAAAAGTTTTAAGTTATTAAGTTTTCACTTTCGGAGTTTGAATTCGAGACCCGGAAAGGTATTTCTAAACGTTCCAAACACTTCGAAAAGAGAAGACGAAAAGTGTGAAATGTGGTGATTTGTAGGTGTTCTTGCTTGTTCTCACCTATATGTAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTCAATGAACTGAGGGTACCAATAATGCTTCAATTGCAGGCTTTCTGTATTCTATCAATGCTTCAACTCTTGGCGCGCAATGGAACTCTGTAAACTCTCCTTTTCTGGAATTTAATGATGTTTGTGATGTAAAATCAGTTAGTACCTAATTACCTATAAAATGTCTCTTTTTTGGGCACAGATGGGACCTTTTCTGCAGCAAACTGTCGAGTCATTTCGACTTCTTCCTCCCACGGAAGATTATGTTCCTCCATACAAGGATCCATGGAGATTTTGGTGACATTTTTTTTGTGTCCACACTGCATTTACAAGCATTTTTGTATCGTATTCTTTTGTCGAGTGAGTTCTAGTTCATTTTCGAGATCTAGGCGTAGCTACAGATTCTGAAGGGTCAGCTTTAGACAAAGTTGATCTCTCCATGATCAAACTATGTTGTGTATTTCATTGCCACTTCAAGTCCAAAAACCTTCAATAGCAT

mRNA sequence

ATGGCGCTTCTCAATTCCTCTCTATCTGTTTCTACTCCCACCAACGCTTCTCTTCCAAATCTGTCCTTCTTCAGCAATCGACCTAGAAACTTGCCCTCTCGGAAAATAATTGGAATGTACAAGAAATTGAGTCTCTGTTCGACTTCAATCTCAAAATCCACCTCAGAAAATGTGTTTTCCAGAAGGGATTTGTTGCTATTTGGGCTTTCTTCTTCGTTTGTTCTGACATTTCCATCATTAGGTTCTCTTGCGGAGGAACAGTTGAAGGCTGCTACAATGGTCGACGAAGTAAATGCTTATTCTTATATTTATCCACTGGAATTGCCGTCTACTAATTTCGCCTTCAAATGGGTGGAATCAAGAAAACCCGAACGTTATTCTTCGGCTGCTCCACTGTCTCCTGATGCACGATTGAGGATTGTCTCTGAGCGAGTTGATTTCATCGACAACCTTATCATATCGGTTACGATAGGCCCTCCAAATTCCATGTATATAAAATCAAAGGACAAGAGTACTTGGACAGCAAAAGATGTTGCAGACTCTGTTTTATCCGACAAATCTGCATTGCGGGTCACTTCGAGTCAGCGCCTGGCTGAGAGTTCAGTCCTAGATACTCATTCAAGTAATATTGATGGTGAGCCATACTGGTATTATGAGTACCTTGTTCGAAAGTCGCCAACAAAAATCGTCGGAGAATCCAACATTTACAGGCATTATGTTGCATCGACCGCAGAACGAGATGGCTTTCTGTATTCTATCAATGCTTCAACTCTTGGCGCGCAATGGAACTCTATGGGACCTTTTCTGCAGCAAACTGTCGAGTCATTTCGACTTCTTCCTCCCACGGAAGATTATGTTCCTCCATACAAGGATCCATGGAGATTTTGGTGACATTTTTTTTGTGTCCACACTGCATTTACAAGCATTTTTGTATCGTATTCTTTTGTCGAGTGAGTTCTAGTTCATTTTCGAGATCTAGGCGTAGCTACAGATTCTGAAGGGTCAGCTTTAGACAAAGTTGATCTCTCCATGATCAAACTATGTTGTGTATTTCATTGCCACTTCAAGTCCAAAAACCTTCAATAGCAT

Coding sequence (CDS)

ATGGCGCTTCTCAATTCCTCTCTATCTGTTTCTACTCCCACCAACGCTTCTCTTCCAAATCTGTCCTTCTTCAGCAATCGACCTAGAAACTTGCCCTCTCGGAAAATAATTGGAATGTACAAGAAATTGAGTCTCTGTTCGACTTCAATCTCAAAATCCACCTCAGAAAATGTGTTTTCCAGAAGGGATTTGTTGCTATTTGGGCTTTCTTCTTCGTTTGTTCTGACATTTCCATCATTAGGTTCTCTTGCGGAGGAACAGTTGAAGGCTGCTACAATGGTCGACGAAGTAAATGCTTATTCTTATATTTATCCACTGGAATTGCCGTCTACTAATTTCGCCTTCAAATGGGTGGAATCAAGAAAACCCGAACGTTATTCTTCGGCTGCTCCACTGTCTCCTGATGCACGATTGAGGATTGTCTCTGAGCGAGTTGATTTCATCGACAACCTTATCATATCGGTTACGATAGGCCCTCCAAATTCCATGTATATAAAATCAAAGGACAAGAGTACTTGGACAGCAAAAGATGTTGCAGACTCTGTTTTATCCGACAAATCTGCATTGCGGGTCACTTCGAGTCAGCGCCTGGCTGAGAGTTCAGTCCTAGATACTCATTCAAGTAATATTGATGGTGAGCCATACTGGTATTATGAGTACCTTGTTCGAAAGTCGCCAACAAAAATCGTCGGAGAATCCAACATTTACAGGCATTATGTTGCATCGACCGCAGAACGAGATGGCTTTCTGTATTCTATCAATGCTTCAACTCTTGGCGCGCAATGGAACTCTATGGGACCTTTTCTGCAGCAAACTGTCGAGTCATTTCGACTTCTTCCTCCCACGGAAGATTATGTTCCTCCATACAAGGATCCATGGAGATTTTGGTGA
Homology
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BLAST of CmoCh05G006730 vs. Swiss-Prot
Match: PPD5_ARATH (PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana GN=PPD5 PE=1 SV=3)

HSP 1 Score: 361.3 bits (926), Expect = 1.0e-98
Identity = 187/289 (64.71%), Postives = 219/289 (75.78%), Query Frame = 1 

Query: 19  PNLSFFSNRPRNLPSRKIIGMYKKLSLCSTSISKST--SENVFSRRDLLLFGLSSSFVLT 78
           PN   F  R  N+ S K  G  K+L +  + +S  +  SE   SRRDL+L GLSS   + 
Sbjct: 11  PNSRLFRCRSSNISS-KYHGASKELMIARSGVSTRSISSEKGLSRRDLVLIGLSSPLSMF 70

Query: 79  FPSLG---------SLAEEQLKAATMVDEVNAYSYIYPLELPSTNFAFKWVESRKPERYS 138
            P             ++ E+LK  TMVD++NAYSY YPL+ PS    FKWVESRKPERYS
Sbjct: 71  LPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKWVESRKPERYS 130

Query: 139 SAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKS 198
           SAAPLSPDARLRIVSERVD  DNL+IS++IGPPNS  + SK+K TW+AK+VADSVLSDKS
Sbjct: 131 SAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKEVADSVLSDKS 190

Query: 199 ALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERD 258
           ALRVTSSQRL ESSVLD H+S+IDGEPYWYYEYLVRKSPTKI   S +YRHY++STAERD
Sbjct: 191 ALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYRHYISSTAERD 250

Query: 259 GFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 297
           G+LY+INASTLG QW+ MGP L++ V SFRLLPPT+ YVPPYKDPWRFW
Sbjct: 251 GYLYTINASTLGKQWDKMGPVLERAVGSFRLLPPTDSYVPPYKDPWRFW 297

[Close]
BLAST of CmoCh05G006730 vs. TrEMBL
Match: A0A0A0LM60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379240 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 2.8e-116
Identity = 220/248 (88.71%), Postives = 233/248 (93.95%), Query Frame = 1 

Query: 1   MALLNSSLSVSTPTNASLPNLSFFSNRPRNLPSRKIIGMYKKLSLCSTSISKSTSENVFS 60
           MALLNSSLSVST TN SLPNL FF N+P+NLP RK IGMYKK ++CSTSISK TSEN  S
Sbjct: 1   MALLNSSLSVSTSTNVSLPNLPFFRNQPKNLPCRKRIGMYKKFNVCSTSISKPTSENGLS 60

Query: 61  RRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAYSYIYPLELPSTNFAFKWVES 120
           RRDLLLFGL+SS  L+FPSLGSLAEE+LKAATMVDE+NAYSY YPLEL STNFAFKWVES
Sbjct: 61  RRDLLLFGLTSSVALSFPSLGSLAEEELKAATMVDEINAYSYTYPLELSSTNFAFKWVES 120

Query: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVAD 180
           RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNS++IKSKDKSTW AKDVAD
Sbjct: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSIFIKSKDKSTWAAKDVAD 180

Query: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240
           SVLSDKSALRVTSSQR+AESSVLDT+SSNIDGEPYWY+EYLVRKSPTKIVGESNIYRHYV
Sbjct: 181 SVLSDKSALRVTSSQRMAESSVLDTNSSNIDGEPYWYFEYLVRKSPTKIVGESNIYRHYV 240

Query: 241 ASTAERDG 249
           ASTAERDG
Sbjct: 241 ASTAERDG 248

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BLAST of CmoCh05G006730 vs. TrEMBL
Match: W9S1C1_9ROSA (PsbP domain-containing protein 5 OS=Morus notabilis GN=L484_007378 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 3.0e-110
Identity = 198/251 (78.88%), Postives = 222/251 (88.45%), Query Frame = 1 

Query: 46  CSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAYSYIYP 105
           CS+  S+ TS++ F RRD LLFGLSSS +  FPS GS AE  LK A++VDE+NAYSY+YP
Sbjct: 18  CSSVASEPTSQHGFWRRDFLLFGLSSSLLSLFPSSGSFAEGDLKMASLVDEINAYSYLYP 77

Query: 106 LELPSTNFAFKWVESRKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSMYI 165
           +ELPS  F FKWVESRKPERYSSAAPLSPDARLRIVSERVD IDNLIISVTIGPPNS +I
Sbjct: 78  IELPSKKFLFKWVESRKPERYSSAAPLSPDARLRIVSERVDIIDNLIISVTIGPPNSRFI 137

Query: 166 KSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKS 225
           KSKDKSTWT KDVADSVLSDK+ALRVTSSQR++ESSVLDTHSS IDG PYWYYEYLVRKS
Sbjct: 138 KSKDKSTWTTKDVADSVLSDKAALRVTSSQRMSESSVLDTHSSEIDGVPYWYYEYLVRKS 197

Query: 226 PTKIVGESNIYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDY 285
           PTK   ESNI+RHYV+STAERDG+LY++NASTL  QW++MGP L++TV SFRLLPPTE+Y
Sbjct: 198 PTKTAQESNIFRHYVSSTAERDGYLYTLNASTLNKQWSTMGPVLEKTVASFRLLPPTEEY 257

Query: 286 VPPYKDPWRFW 297
           VPPYKDPWRFW
Sbjct: 258 VPPYKDPWRFW 268

[Close]
BLAST of CmoCh05G006730 vs. TrEMBL
Match: D7SUI6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g04310 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 4.0e-110
Identity = 197/278 (70.86%), Postives = 227/278 (81.65%), Query Frame = 1 

Query: 19  PNLSFFSNRPRNLPSRKIIGMYKKLSLCSTSISKSTSENVFSRRDLLLFGLSSSFVLTFP 78
           PNL  F N  R + ++K  G+ +K+  CS   S+  S+  F RRDL+LFG SSS  L FP
Sbjct: 7   PNLLIFRNHTRTMVNQKKCGLPEKIISCSCVPSRPNSKIGFYRRDLILFGFSSSAALIFP 66

Query: 79  SLGSLAEEQLKAATMVDEVNAYSYIYPLELPSTNFAFKWVESRKPERYSSAAPLSPDARL 138
             G   EE+ K A++VD++NAYSY+YPLELPS    FKWVESRKPERYSSAAPLSPDARL
Sbjct: 67  PSGYGTEEEFKMASVVDDINAYSYLYPLELPSKKLVFKWVESRKPERYSSAAPLSPDARL 126

Query: 139 RIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLA 198
           RIVSERVD IDNLIISVTIGPPNS ++KSKDK TWTAKDVADSVL+DK+ALR+TSSQR++
Sbjct: 127 RIVSERVDIIDNLIISVTIGPPNSQFLKSKDKGTWTAKDVADSVLADKAALRITSSQRMS 186

Query: 199 ESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSINASTL 258
           ESSVLDTH+S +DGEPYWYYEYL+RKSPTK   ESNIYRHYVASTAERDG+LYS+N ST+
Sbjct: 187 ESSVLDTHASEVDGEPYWYYEYLIRKSPTKSAQESNIYRHYVASTAERDGYLYSLNVSTI 246

Query: 259 GAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 297
             QW  MGP L++   SFRLLPPTEDYVPPYKDPWRFW
Sbjct: 247 SKQWKVMGPLLEKAASSFRLLPPTEDYVPPYKDPWRFW 284

[Close]
BLAST of CmoCh05G006730 vs. TrEMBL
Match: V4UN44_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009098mg PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 9.8e-109
Identity = 204/297 (68.69%), Postives = 238/297 (80.13%), Query Frame = 1 

Query: 1   MALLNSSLSVSTPTNASLPNLSFFSN-RPRNLPSRKIIGMYKKLSLCSTSISKSTSENVF 60
           M LL+ SLS        LP L F  N R   +  +K   +  K  +CS + SK   +N F
Sbjct: 1   MVLLSPSLS--------LPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGF 60

Query: 61  SRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAYSYIYPLELPSTNFAFKWVE 120
            RRDL+LFGLSSS  L FP+ GS+A E +K A+ VDE+NAY+Y+YP+ELPS  F FKWVE
Sbjct: 61  CRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVE 120

Query: 121 SRKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVA 180
           SRKPERYSSAAPLSP+ARLRIVSERVD IDNLIISVTIGPPN  ++KSKDKSTW AKDVA
Sbjct: 121 SRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVA 180

Query: 181 DSVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHY 240
           DSVLSDKSALRVTSSQR+AESSVLD H+S +DGEPYW+YEYL+RKSPT +  E N+YRHY
Sbjct: 181 DSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHY 240

Query: 241 VASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 297
           VASTAER+G+LYSI+ASTLG QW+ MGPFL+++V SF LLPPT+DYVPPYKDPWRFW
Sbjct: 241 VASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW 289

[Close]
BLAST of CmoCh05G006730 vs. TrEMBL
Match: A0A067GW40_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020921mg PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 9.8e-109
Identity = 204/297 (68.69%), Postives = 238/297 (80.13%), Query Frame = 1 

Query: 1   MALLNSSLSVSTPTNASLPNLSFFSN-RPRNLPSRKIIGMYKKLSLCSTSISKSTSENVF 60
           M LL+ SLS        LP L F  N R   +  +K   +  K  +CS + SK   +N F
Sbjct: 1   MVLLSPSLS--------LPRLHFIRNHRGSIVQGQKNCRLNNKAIVCSCASSKPIQQNGF 60

Query: 61  SRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAYSYIYPLELPSTNFAFKWVE 120
            RRDL+LFGLSSS  L FP+ GS+A E +K A+ VDE+NAY+Y+YP+ELPS  F FKWVE
Sbjct: 61  CRRDLVLFGLSSSLSLGFPTPGSVAGEDVKMASFVDEINAYTYLYPMELPSKKFLFKWVE 120

Query: 121 SRKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVA 180
           SRKPERYSSAAPLSP+ARLRIVSERVD IDNLIISVTIGPPN  ++KSKDKSTW AKDVA
Sbjct: 121 SRKPERYSSAAPLSPNARLRIVSERVDIIDNLIISVTIGPPNVQFLKSKDKSTWNAKDVA 180

Query: 181 DSVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHY 240
           DSVLSDKSALRVTSSQR+AESSVLD H+S +DGEPYW+YEYL+RKSPT +  E N+YRHY
Sbjct: 181 DSVLSDKSALRVTSSQRMAESSVLDAHTSKVDGEPYWFYEYLIRKSPTNLGQEPNLYRHY 240

Query: 241 VASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 297
           VASTAER+G+LYSI+ASTLG QW+ MGPFL+++V SF LLPPT+DYVPPYKDPWRFW
Sbjct: 241 VASTAEREGYLYSISASTLGKQWDEMGPFLEKSVASFHLLPPTDDYVPPYKDPWRFW 289

[Close]
BLAST of CmoCh05G006730 vs. TAIR10
Match: AT5G11450.1 (AT5G11450.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)

HSP 1 Score: 361.3 bits (926), Expect = 5.7e-100
Identity = 187/289 (64.71%), Postives = 219/289 (75.78%), Query Frame = 1 

Query: 19  PNLSFFSNRPRNLPSRKIIGMYKKLSLCSTSISKST--SENVFSRRDLLLFGLSSSFVLT 78
           PN   F  R  N+ S K  G  K+L +  + +S  +  SE   SRRDL+L GLSS   + 
Sbjct: 11  PNSRLFRCRSSNISS-KYHGASKELMIARSGVSTRSISSEKGLSRRDLVLIGLSSPLSMF 70

Query: 79  FPSLG---------SLAEEQLKAATMVDEVNAYSYIYPLELPSTNFAFKWVESRKPERYS 138
            P             ++ E+LK  TMVD++NAYSY YPL+ PS    FKWVESRKPERYS
Sbjct: 71  LPLSSPVTHAEEDVKMSGEELKMGTMVDDINAYSYAYPLDYPSEKLVFKWVESRKPERYS 130

Query: 139 SAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKS 198
           SAAPLSPDARLRIVSERVD  DNL+IS++IGPPNS  + SK+K TW+AK+VADSVLSDKS
Sbjct: 131 SAAPLSPDARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKEVADSVLSDKS 190

Query: 199 ALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERD 258
           ALRVTSSQRL ESSVLD H+S+IDGEPYWYYEYLVRKSPTKI   S +YRHY++STAERD
Sbjct: 191 ALRVTSSQRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYRHYISSTAERD 250

Query: 259 GFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 297
           G+LY+INASTLG QW+ MGP L++ V SFRLLPPT+ YVPPYKDPWRFW
Sbjct: 251 GYLYTINASTLGKQWDKMGPVLERAVGSFRLLPPTDSYVPPYKDPWRFW 297

[Close]
BLAST of CmoCh05G006730 vs. NCBI nr
Match: gi|449441968|ref|XP_004138754.1| (PREDICTED: psbP domain-containing protein 5, chloroplastic [Cucumis sativus])

HSP 1 Score: 527.3 bits (1357), Expect = 1.7e-146
Identity = 265/296 (89.53%), Postives = 281/296 (94.93%), Query Frame = 1 

Query: 1   MALLNSSLSVSTPTNASLPNLSFFSNRPRNLPSRKIIGMYKKLSLCSTSISKSTSENVFS 60
           MALLNSSLSVST TN SLPNL FF N+P+NLP RK IGMYKK ++CSTSISK TSEN  S
Sbjct: 1   MALLNSSLSVSTSTNVSLPNLPFFRNQPKNLPCRKRIGMYKKFNVCSTSISKPTSENGLS 60

Query: 61  RRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAYSYIYPLELPSTNFAFKWVES 120
           RRDLLLFGL+SS  L+FPSLGSLAEE+LKAATMVDE+NAYSY YPLEL STNFAFKWVES
Sbjct: 61  RRDLLLFGLTSSVALSFPSLGSLAEEELKAATMVDEINAYSYTYPLELSSTNFAFKWVES 120

Query: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVAD 180
           RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNS++IKSKDKSTW AKDVAD
Sbjct: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSIFIKSKDKSTWAAKDVAD 180

Query: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240
           SVLSDKSALRVTSSQR+AESSVLDT+SSNIDGEPYWY+EYLVRKSPTKIVGESNIYRHYV
Sbjct: 181 SVLSDKSALRVTSSQRMAESSVLDTNSSNIDGEPYWYFEYLVRKSPTKIVGESNIYRHYV 240

Query: 241 ASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 297
           ASTAERDGFLY+INASTLGAQWN+MGPFLQ+TVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 241 ASTAERDGFLYTINASTLGAQWNTMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]
BLAST of CmoCh05G006730 vs. NCBI nr
Match: gi|659088718|ref|XP_008445125.1| (PREDICTED: psbP domain-containing protein 5, chloroplastic [Cucumis melo])

HSP 1 Score: 519.2 bits (1336), Expect = 4.6e-144
Identity = 262/296 (88.51%), Postives = 278/296 (93.92%), Query Frame = 1 

Query: 1   MALLNSSLSVSTPTNASLPNLSFFSNRPRNLPSRKIIGMYKKLSLCSTSISKSTSENVFS 60
           MALL SSLSVST TNASLPNL FF N+P+NLP RK IGMY K +LCST ISK TSE+ F 
Sbjct: 1   MALLYSSLSVSTSTNASLPNLPFFRNQPKNLPCRKRIGMYTKFNLCSTPISKPTSEDGFP 60

Query: 61  RRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAYSYIYPLELPSTNFAFKWVES 120
           RR+LLLFGL+SS  L FPSLGSLAEE+LK+ATMVDE+NAYSY YP+EL STNFAFKWVES
Sbjct: 61  RRELLLFGLTSSVALFFPSLGSLAEEELKSATMVDEINAYSYTYPVELSSTNFAFKWVES 120

Query: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVAD 180
           RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNS+YIKSKDKSTW AKDVAD
Sbjct: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSIYIKSKDKSTWAAKDVAD 180

Query: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240
           SVLSDKSALRVTSSQR+AESSVLDT+SSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV
Sbjct: 181 SVLSDKSALRVTSSQRMAESSVLDTNSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240

Query: 241 ASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 297
           ASTAERDGFLY+INASTLGAQWN+MGPFLQ+TVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 241 ASTAERDGFLYTINASTLGAQWNTMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]
BLAST of CmoCh05G006730 vs. NCBI nr
Match: gi|1009175281|ref|XP_015868796.1| (PREDICTED: psbP domain-containing protein 5, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 426.8 bits (1096), Expect = 3.1e-116
Identity = 214/297 (72.05%), Postives = 248/297 (83.50%), Query Frame = 1 

Query: 1   MALLNSSLSV-STPTNASLPNLSFFSNRPRNLPSRKIIGMYKKLSLCSTSISKSTSENVF 60
           M +L+ SLS+ S+      PNL FF N+PR + + K   ++     CSTS S  TS+N F
Sbjct: 1   MVVLSPSLSLFSSNQLLRSPNLLFFRNQPRTMMNHKNRRLHDMFRPCSTSSSNPTSQNGF 60

Query: 61  SRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAYSYIYPLELPSTNFAFKWVE 120
            RRDL+LFGLSSS ++ FPS GS+AEE +K A++VDE+N+YSY+YP+ELPS    FKWVE
Sbjct: 61  VRRDLMLFGLSSSALVLFPSSGSIAEEDIKMASLVDEINSYSYLYPVELPSKKLFFKWVE 120

Query: 121 SRKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVA 180
           SRKPERYSSAAPLSPDARLRIVSERVD IDNLIISV+IGPPNS++IKS+DK  WTAKDVA
Sbjct: 121 SRKPERYSSAAPLSPDARLRIVSERVDIIDNLIISVSIGPPNSVFIKSQDKKAWTAKDVA 180

Query: 181 DSVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHY 240
           DSVLSDKSALRVTSSQR+ ESS+LD HSS IDGEPYWYYEYLVRKSPTK   ESN+YRHY
Sbjct: 181 DSVLSDKSALRVTSSQRMTESSLLDAHSSEIDGEPYWYYEYLVRKSPTKTAQESNLYRHY 240

Query: 241 VASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 297
           VASTAERDG+LYS+NASTL  QWN+MGP L++TV SFRLLPPTE+YVPPYKDPWRFW
Sbjct: 241 VASTAERDGYLYSLNASTLNKQWNTMGPLLKKTVSSFRLLPPTENYVPPYKDPWRFW 297

[Close]
BLAST of CmoCh05G006730 vs. NCBI nr
Match: gi|700207774|gb|KGN62893.1| (hypothetical protein Csa_2G379240 [Cucumis sativus])

HSP 1 Score: 426.4 bits (1095), Expect = 4.1e-116
Identity = 220/248 (88.71%), Postives = 233/248 (93.95%), Query Frame = 1 

Query: 1   MALLNSSLSVSTPTNASLPNLSFFSNRPRNLPSRKIIGMYKKLSLCSTSISKSTSENVFS 60
           MALLNSSLSVST TN SLPNL FF N+P+NLP RK IGMYKK ++CSTSISK TSEN  S
Sbjct: 1   MALLNSSLSVSTSTNVSLPNLPFFRNQPKNLPCRKRIGMYKKFNVCSTSISKPTSENGLS 60

Query: 61  RRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAYSYIYPLELPSTNFAFKWVES 120
           RRDLLLFGL+SS  L+FPSLGSLAEE+LKAATMVDE+NAYSY YPLEL STNFAFKWVES
Sbjct: 61  RRDLLLFGLTSSVALSFPSLGSLAEEELKAATMVDEINAYSYTYPLELSSTNFAFKWVES 120

Query: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVAD 180
           RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNS++IKSKDKSTW AKDVAD
Sbjct: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSIFIKSKDKSTWAAKDVAD 180

Query: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240
           SVLSDKSALRVTSSQR+AESSVLDT+SSNIDGEPYWY+EYLVRKSPTKIVGESNIYRHYV
Sbjct: 181 SVLSDKSALRVTSSQRMAESSVLDTNSSNIDGEPYWYFEYLVRKSPTKIVGESNIYRHYV 240

Query: 241 ASTAERDG 249
           ASTAERDG
Sbjct: 241 ASTAERDG 248

[Close]
BLAST of CmoCh05G006730 vs. NCBI nr
Match: gi|703147410|ref|XP_010109044.1| (PsbP domain-containing protein 5 [Morus notabilis])

HSP 1 Score: 406.4 bits (1043), Expect = 4.4e-110
Identity = 198/251 (78.88%), Postives = 222/251 (88.45%), Query Frame = 1 

Query: 46  CSTSISKSTSENVFSRRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAYSYIYP 105
           CS+  S+ TS++ F RRD LLFGLSSS +  FPS GS AE  LK A++VDE+NAYSY+YP
Sbjct: 18  CSSVASEPTSQHGFWRRDFLLFGLSSSLLSLFPSSGSFAEGDLKMASLVDEINAYSYLYP 77

Query: 106 LELPSTNFAFKWVESRKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSMYI 165
           +ELPS  F FKWVESRKPERYSSAAPLSPDARLRIVSERVD IDNLIISVTIGPPNS +I
Sbjct: 78  IELPSKKFLFKWVESRKPERYSSAAPLSPDARLRIVSERVDIIDNLIISVTIGPPNSRFI 137

Query: 166 KSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKS 225
           KSKDKSTWT KDVADSVLSDK+ALRVTSSQR++ESSVLDTHSS IDG PYWYYEYLVRKS
Sbjct: 138 KSKDKSTWTTKDVADSVLSDKAALRVTSSQRMSESSVLDTHSSEIDGVPYWYYEYLVRKS 197

Query: 226 PTKIVGESNIYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDY 285
           PTK   ESNI+RHYV+STAERDG+LY++NASTL  QW++MGP L++TV SFRLLPPTE+Y
Sbjct: 198 PTKTAQESNIFRHYVSSTAERDGYLYTLNASTLNKQWSTMGPVLEKTVASFRLLPPTEEY 257

Query: 286 VPPYKDPWRFW 297
           VPPYKDPWRFW
Sbjct: 258 VPPYKDPWRFW 268

The following BLAST results are available for this feature:
BLAST of CmoCh05G006730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPD5_ARATH1.0e-9864.71PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana GN=PPD5 ... [more]
BLAST of CmoCh05G006730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM60_CUCSA2.8e-11688.71Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379240 PE=4 SV=1[more]
W9S1C1_9ROSA3.0e-11078.88PsbP domain-containing protein 5 OS=Morus notabilis GN=L484_007378 PE=4 SV=1[more]
D7SUI6_VITVI4.0e-11070.86Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g04310 PE=4 SV=... [more]
V4UN44_9ROSI9.8e-10968.69Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009098mg PE=4 SV=1[more]
A0A067GW40_CITSI9.8e-10968.69Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020921mg PE=4 SV=1[more]
BLAST of CmoCh05G006730 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G11450.15.7e-10064.71 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family pr... [more]
BLAST of CmoCh05G006730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449441968|ref|XP_004138754.1|1.7e-14689.53PREDICTED: psbP domain-containing protein 5, chloroplastic [Cucumis sativus][more]
gi|659088718|ref|XP_008445125.1|4.6e-14488.51PREDICTED: psbP domain-containing protein 5, chloroplastic [Cucumis melo][more]
gi|1009175281|ref|XP_015868796.1|3.1e-11672.05PREDICTED: psbP domain-containing protein 5, chloroplastic-like [Ziziphus jujuba... [more]
gi|700207774|gb|KGN62893.1|4.1e-11688.71hypothetical protein Csa_2G379240 [Cucumis sativus][more]
gi|703147410|ref|XP_010109044.1|4.4e-11078.88PsbP domain-containing protein 5 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002683PsbP
IPR016123Mog1/PsbP_a/b/a-sand
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0009654photosystem II oxygen evolving complex
GO:0019898extrinsic component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0000023 maltose metabolic process
biological_process GO:0015979 photosynthesis
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0010027 thylakoid membrane organization
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0009523 photosystem II
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G006730.1CmoCh05G006730.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002683PsbP familyPFAMPF01789PsbPcoord: 171..277
score: 8.4
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichGENE3DG3DSA:3.40.1000.10coord: 89..279
score: 1.6
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichunknownSSF55724Mog1p/PsbP-likecoord: 92..278
score: 2.51
NoneNo IPR availablePANTHERPTHR31407FAMILY NOT NAMEDcoord: 1..296
score: 2.6E
NoneNo IPR availablePANTHERPTHR31407:SF7PSBP DOMAIN-CONTAINING PROTEIN 5, CHLOROPLASTICcoord: 1..296
score: 2.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh05G006730Cucsa.161970Cucumber (Gy14) v1cgycmoB0461
CmoCh05G006730CmaCh05G006440Cucurbita maxima (Rimu)cmacmoB786
CmoCh05G006730Cla022278Watermelon (97103) v1cmowmB746
CmoCh05G006730Csa2G379240Cucumber (Chinese Long) v2cmocuB778
CmoCh05G006730MELO3C011212Melon (DHL92) v3.5.1cmomeB719
CmoCh05G006730ClCG08G012880Watermelon (Charleston Gray)cmowcgB713
CmoCh05G006730CSPI02G22990Wild cucumber (PI 183967)cmocpiB783
CmoCh05G006730Lsi08G011480Bottle gourd (USVL1VR-Ls)cmolsiB728
CmoCh05G006730Cp4.1LG11g05660Cucurbita pepo (Zucchini)cmocpeB720
CmoCh05G006730MELO3C011212.2Melon (DHL92) v3.6.1cmomedB816
CmoCh05G006730CsaV3_2G031600Cucumber (Chinese Long) v3cmocucB0919
CmoCh05G006730Cla97C08G156140Watermelon (97103) v2cmowmbB800
CmoCh05G006730Bhi04G000841Wax gourdcmowgoB0947
CmoCh05G006730CsGy2G022730Cucumber (Gy14) v2cgybcmoB239
CmoCh05G006730Carg08333Silver-seed gourdcarcmoB0087
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G006730Cucurbita moschata (Rifu)cmocmoB151
CmoCh05G006730Cucurbita moschata (Rifu)cmocmoB159
CmoCh05G006730Cucurbita moschata (Rifu)cmocmoB373
CmoCh05G006730Cucurbita maxima (Rimu)cmacmoB194
CmoCh05G006730Cucurbita maxima (Rimu)cmacmoB486
CmoCh05G006730Cucurbita pepo (Zucchini)cmocpeB733
CmoCh05G006730Cucurbita pepo (Zucchini)cmocpeB747
CmoCh05G006730Cucurbita pepo (Zucchini)cmocpeB754
CmoCh05G006730Silver-seed gourdcarcmoB1318
CmoCh05G006730Silver-seed gourdcarcmoB1320