Carg08333 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08333
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	PsbP family
Location	Cucurbita_argyrosperma_scaffold_015 : 907771 .. 909650 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTAAATTGTATGATACATAATTCCTTATCTTTTCAAGGGTGGAATCAAGAAAACCCGAACGTTATTCTTCGGCTGCTCCACTGTCTCGTAAGATTAAGAAACATAGTTTGTTCTTTGAGCAACTTGAATTATTTAGATTTTCTTCATATTAACTTCATTGGGTTTGCACACGTCGTAGCTGATGCACGATTGAGGATTGTCTCTGAGCGAGTTGATTTCATCGACAACCTAATCATATCGGTTACGGTAATTTCTTGTTCAATTTGATATCAGTTATTTCATTCTCTTTTTAGGTTGATAGTTTTTATCATCTTTTTTGTTTCAGATAGGCCCTCCAAATTCCATGTATATAAAATCAAAGGACAAGAGTACTTGGACAGCAAAAGATGTTGCAGACTCTGTTTTATCCGACAAATCTGCATTGGTAATAGTTTCTTGCTTTTTACCCCCAAATATTTGGACAAAGCTTCATTTGAATTCATGTTCTTGTTCGTCTTGCAGCGGGTCACTTCGAGTCAGCGCCTGGCTGAGAGTTCAGTCCTAGATACTCAGTCAAGTAATGTAAGTAAACTATGAAGTCCTGTTGTTAGGTTCAGTATATATGTCGCCTGGCCGAGAGCGTTTATAATAGTCCTCTGGCTCTCTCAGATTGATGGTGAGCCATACTGGTATTATGAGTACCTTGTTCGAAAGTCGCCAACAAAAATCGTATGTCTCGTCTTTCTGATCGCCATGTTTCCTCTCAGTAGAAAACATTACAAATATTTGATTATTTGAGGACTCTAATGAATCGTGCAGGTCGGAGAATCCAACATTTACAGGCATTATGTTGCATCGACTGCAGAACGAGATGGTAAGTTCTTGATTCCTAGTCTGCATTCTGTCGACAAGTTATAAATGGGTAAAAAACTTGCTATAACATAACCCCATCTTGTCACCTGCAAAGCATATTACAATTTTCTTCTTGAAAACTGGTGCATCAGAGGTATATTCGTTGCATTATGCTTATAGCTCACTTTTCGGAAGCTTCGTCCACTCAAAAGTCAACTTTAAACGACGATAAAAGTTTTAAGTTATTAAGTTTTCACTTTCGGAGTTTGAATTCGAGACCTGGAAAGGTATTTCTAAACGTTCCAAACACTTCGAAAAGAGAAGACGAAAAGTGTGAAATGTGGTGATTTGTAGGTGTTCTTGCTTGTTCTCACCTATATGTAGGGTTTTTTTTTTTTTTTTTTTTTTTTTGTTTCAATGAACTGAGGGTACCAATAATGCTTCAATTGCAGGCTTTCTGTATTCTATCAATGCTTCAACTCTTGGCGCGCAATGGAACTCTGTAAACTCTCCCTTTTCTGGAATTTAATGATGTTTGTGATGTAAAATCAGTTAGTACCTAATTACCTATAAAATGTCTCTTTTTTGGGCACAGATGGGACCTTTTCTGCAGCAAACCGTCGAGTCATTTCGACTTCTTCCTCCCACGGAAGACTATGTTCCTCCATACAAGGATCCATGGAGATTTTGGTGACATTTTTTTTTGTATCCACACTGCATTTACAAGCATTTTTGTATCGTATTCTTTTGTCGAGTGAGTTCTAGTTCATTTTCGAGATCTAGGCGTAGCTACAGATTTTGAAGGGTCAGCTTTAGACAAAGTTGATCTCTCCATGATCAAACTATGTTGTGTATTTCATTGCCACTTCCAAGTCCAAAAACCTTCAATAGCATAAAACTTTGAAAATCATGCTCATGGCCATTACACAGTAGAAGAAGAAACTTGAACCTGATTGAACTTGAAAAGAATATGAAAAGATCCGCTTGTAACTTTTATTCGATGAGCGACGGTCCTTCCACTCAGCACCTTCGGATCATTAAGG

mRNA sequence

ATGTCCTTAAATTGTATGATACATAATTCCTTATCTTTTCAAGGGTGGAATCAAGAAAACCCGAACGTTATTCTTCGGCTGCTCCACTGTCTCGTAAGATTAAGAAACATAGTTTGTTCTTTGAGCAACTTGAATTATTTAGATTTTCTTCATATTAACTTCATTGGGTTTGCACACGTCGTAGCTGATGCACGATTGAGGATTGTCTCTGAGCGAGTTGATTTCATCGACAACCTAATCATATCGGTTACGATAGGCCCTCCAAATTCCATGTATATAAAATCAAAGGACAAGAGTACTTGGACAGCAAAAGATGTTGCAGACTCTGTTTTATCCGACAAATCTGCATTGCGGGTCACTTCGAGTCAGCGCCTGGCTGAGAGTTCAGTCCTAGATACTCAGTCAAGTAATATTGATGGTGAGCCATACTGGTATTATGAGTACCTTGTTCGAAAGTCGCCAACAAAAATCGTCGGAGAATCCAACATTTACAGGCATTATGTTGCATCGACTGCAGAACGAGATGGCTTTCTGTATTCTATCAATGCTTCAACTCTTGGCGCGCAATGGAACTCTATGGGACCTTTTCTGCAGCAAACCGTCGAGTCATTTCGACTTCTTCCTCCCACGGAAGACTATGTTCCTCCATACAAGGATCCATGGAGATTTTGGTGACATTTTTTTTTGTATCCACACTGCATTTACAAGCATTTTTGTATCGTATTCTTTTGTCGAGTGAGTTCTAGTTCATTTTCGAGATCTAGGCGTAGCTACAGATTTTGAAGGGTCAGCTTTAGACAAAGTTGATCTCTCCATGATCAAACTATGTTGTGTATTTCATTGCCACTTCCAAGTCCAAAAACCTTCAATAGCATAAAACTTTGAAAATCATGCTCATGGCCATTACACAGTAGAAGAAGAAACTTGAACCTGATTGAACTTGAAAAGAATATGAAAAGATCCGCTTGTAACTTTTATTCGATGAGCGACGGTCCTTCCACTCAGCACCTTCGGATCATTAAGG

Coding sequence (CDS)

ATGTCCTTAAATTGTATGATACATAATTCCTTATCTTTTCAAGGGTGGAATCAAGAAAACCCGAACGTTATTCTTCGGCTGCTCCACTGTCTCGTAAGATTAAGAAACATAGTTTGTTCTTTGAGCAACTTGAATTATTTAGATTTTCTTCATATTAACTTCATTGGGTTTGCACACGTCGTAGCTGATGCACGATTGAGGATTGTCTCTGAGCGAGTTGATTTCATCGACAACCTAATCATATCGGTTACGATAGGCCCTCCAAATTCCATGTATATAAAATCAAAGGACAAGAGTACTTGGACAGCAAAAGATGTTGCAGACTCTGTTTTATCCGACAAATCTGCATTGCGGGTCACTTCGAGTCAGCGCCTGGCTGAGAGTTCAGTCCTAGATACTCAGTCAAGTAATATTGATGGTGAGCCATACTGGTATTATGAGTACCTTGTTCGAAAGTCGCCAACAAAAATCGTCGGAGAATCCAACATTTACAGGCATTATGTTGCATCGACTGCAGAACGAGATGGCTTTCTGTATTCTATCAATGCTTCAACTCTTGGCGCGCAATGGAACTCTATGGGACCTTTTCTGCAGCAAACCGTCGAGTCATTTCGACTTCTTCCTCCCACGGAAGACTATGTTCCTCCATACAAGGATCCATGGAGATTTTGGTGA

Protein sequence

MSLNCMIHNSLSFQGWNQENPNVILRLLHCLVRLRNIVCSLSNLNYLDFLHINFIGFAHVVADARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSSQRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW

Homology

[Close]

BLAST of Carg08333 vs. NCBI nr
Match: XP_022929567.1 (psbP domain-containing protein 5, chloroplastic [Cucurbita moschata])

HSP 1 Score: 326.2 bits (835), Expect = 8.4e-86
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 63  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS 122
           DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS
Sbjct: 135 DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS 194

Query: 123 QRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN 182
           QRLAESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN
Sbjct: 195 QRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN 254

Query: 183 ASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 225
           ASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 255 ASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]

BLAST of Carg08333 vs. NCBI nr
Match: XP_022997451.1 (psbP domain-containing protein 5, chloroplastic [Cucurbita maxima])

HSP 1 Score: 324.7 bits (831), Expect = 2.5e-85
Identity = 160/162 (98.77%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 63  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS 122
           DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS
Sbjct: 135 DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS 194

Query: 123 QRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN 182
           QRLAESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN
Sbjct: 195 QRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN 254

Query: 183 ASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 225
           ASTLGAQWNSMGPFLQ+TVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 255 ASTLGAQWNSMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]

BLAST of Carg08333 vs. NCBI nr
Match: XP_023545350.1 (psbP domain-containing protein 5, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324.3 bits (830), Expect = 3.2e-85
Identity = 159/162 (98.15%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 63  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS 122
           DARLRIVSERVDF+DNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS
Sbjct: 135 DARLRIVSERVDFVDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS 194

Query: 123 QRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN 182
           QRLAESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN
Sbjct: 195 QRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN 254

Query: 183 ASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 225
           ASTLGAQWNSMGPFLQ+TVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 255 ASTLGAQWNSMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]

BLAST of Carg08333 vs. NCBI nr
Match: XP_008445125.1 (PREDICTED: psbP domain-containing protein 5, chloroplastic isoform X1 [Cucumis melo] >XP_016900020.1 PREDICTED: psbP domain-containing protein 5, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 318.2 bits (814), Expect = 2.3e-83
Identity = 155/162 (95.68%), Postives = 160/162 (98.77%), Query Frame = 0


Query: 63  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS 122
           DARLRIVSERVDFIDNLIISVTIGPPNS+YIKSKDKSTW AKDVADSVLSDKSALRVTSS
Sbjct: 135 DARLRIVSERVDFIDNLIISVTIGPPNSIYIKSKDKSTWAAKDVADSVLSDKSALRVTSS 194

Query: 123 QRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN 182
           QR+AESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLY+IN
Sbjct: 195 QRMAESSVLDTNSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYTIN 254

Query: 183 ASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 225
           ASTLGAQWN+MGPFLQ+TVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 255 ASTLGAQWNTMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]

BLAST of Carg08333 vs. NCBI nr
Match: XP_022131385.1 (psbP domain-containing protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 315.8 bits (808), Expect = 1.1e-82
Identity = 154/162 (95.06%), Postives = 160/162 (98.77%), Query Frame = 0


Query: 63  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS 122
           DARLRIVSERVDFIDNL+ISVTIGPPNSM+IKSKDKSTW+AKDVADSVLSDKSALRVTSS
Sbjct: 135 DARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVADSVLSDKSALRVTSS 194

Query: 123 QRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN 182
           QRLAESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSI+
Sbjct: 195 QRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIS 254

Query: 183 ASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 225
           ASTLGAQWN+MGPFLQ+ VESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 255 ASTLGAQWNAMGPFLQKIVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]

BLAST of Carg08333 vs. TAIR10
Match: AT5G11450.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)

HSP 1 Score: 260.8 bits (665), Expect = 7.9e-70
Identity = 125/162 (77.16%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 63  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS 122
           DARLRIVSERVD  DNL+IS++IGPPNS  + SK+K TW+AK+VADSVLSDKSALRVTSS
Sbjct: 137 DARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKEVADSVLSDKSALRVTSS 196

Query: 123 QRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN 182
           QRL ESSVLD  +S+IDGEPYWYYEYLVRKSPTKI   S +YRHY++STAERDG+LY+IN
Sbjct: 197 QRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYRHYISSTAERDGYLYTIN 256

Query: 183 ASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 225
           ASTLG QW+ MGP L++ V SFRLLPPT+ YVPPYKDPWRFW
Sbjct: 257 ASTLGKQWDKMGPVLERAVGSFRLLPPTDSYVPPYKDPWRFW 297

[Close]

BLAST of Carg08333 vs. Swiss-Prot
Match: sp|P82715|PPD5_ARATH (PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD5 PE=1 SV=3)

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-68
Identity = 125/162 (77.16%), Postives = 143/162 (88.27%), Query Frame = 0


Query: 63  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS 122
           DARLRIVSERVD  DNL+IS++IGPPNS  + SK+K TW+AK+VADSVLSDKSALRVTSS
Sbjct: 137 DARLRIVSERVDLTDNLVISISIGPPNSR-LTSKEKKTWSAKEVADSVLSDKSALRVTSS 196

Query: 123 QRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN 182
           QRL ESSVLD  +S+IDGEPYWYYEYLVRKSPTKI   S +YRHY++STAERDG+LY+IN
Sbjct: 197 QRLEESSVLDAHASDIDGEPYWYYEYLVRKSPTKIAEASKLYRHYISSTAERDGYLYTIN 256

Query: 183 ASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 225
           ASTLG QW+ MGP L++ V SFRLLPPT+ YVPPYKDPWRFW
Sbjct: 257 ASTLGKQWDKMGPVLERAVGSFRLLPPTDSYVPPYKDPWRFW 297

[Close]

BLAST of Carg08333 vs. TrEMBL
Match: tr|A0A1S4DWE4|A0A1S4DWE4_CUCME (psbP domain-containing protein 5, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488254 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 1.5e-83
Identity = 155/162 (95.68%), Postives = 160/162 (98.77%), Query Frame = 0


Query: 63  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS 122
           DARLRIVSERVDFIDNLIISVTIGPPNS+YIKSKDKSTW AKDVADSVLSDKSALRVTSS
Sbjct: 135 DARLRIVSERVDFIDNLIISVTIGPPNSIYIKSKDKSTWAAKDVADSVLSDKSALRVTSS 194

Query: 123 QRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN 182
           QR+AESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLY+IN
Sbjct: 195 QRMAESSVLDTNSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYTIN 254

Query: 183 ASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 225
           ASTLGAQWN+MGPFLQ+TVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 255 ASTLGAQWNTMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]

BLAST of Carg08333 vs. TrEMBL
Match: tr|A0A1S4DVK9|A0A1S4DVK9_CUCME (psbP domain-containing protein 5, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488254 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 5.4e-81
Identity = 153/162 (94.44%), Postives = 158/162 (97.53%), Query Frame = 0


Query: 63  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS 122
           DARLRIVSERVDFIDNLIIS  IGPPNS+YIKSKDKSTW AKDVADSVLSDKSALRVTSS
Sbjct: 135 DARLRIVSERVDFIDNLIIS--IGPPNSIYIKSKDKSTWAAKDVADSVLSDKSALRVTSS 194

Query: 123 QRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN 182
           QR+AESSVLDT SSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLY+IN
Sbjct: 195 QRMAESSVLDTNSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYTIN 254

Query: 183 ASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 225
           ASTLGAQWN+MGPFLQ+TVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 255 ASTLGAQWNTMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 294

[Close]

BLAST of Carg08333 vs. TrEMBL
Match: tr|A0A2P5G237|A0A2P5G237_9ROSA (PsbP family OS=Trema orientalis OX=63057 GN=TorRG33x02_003960 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.7e-74
Identity = 139/162 (85.80%), Postives = 150/162 (92.59%), Query Frame = 0


Query: 63  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS 122
           DARLRIVSERVDFIDNLIISV+IGPPNS +IKSKDKSTWTAKDVADSVLSDKSALRVTSS
Sbjct: 107 DARLRIVSERVDFIDNLIISVSIGPPNSGFIKSKDKSTWTAKDVADSVLSDKSALRVTSS 166

Query: 123 QRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN 182
           QR++ESSVLD  S+ IDGE YWYYEYLVRKSPTK   ESN+YRHYVASTAERDG+LYS+N
Sbjct: 167 QRMSESSVLDAHSTEIDGETYWYYEYLVRKSPTKTAQESNLYRHYVASTAERDGYLYSLN 226

Query: 183 ASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 225
           ASTL  QWN MGP LQ+TV+SFRLLPPTEDYVPP+KDPWRFW
Sbjct: 227 ASTLNKQWNQMGPLLQKTVDSFRLLPPTEDYVPPFKDPWRFW 268

[Close]

BLAST of Carg08333 vs. TrEMBL
Match: tr|A0A2P5BWA2|A0A2P5BWA2_PARAD (PsbP family OS=Parasponia andersonii OX=3476 GN=PanWU01x14_204570 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.7e-74
Identity = 139/162 (85.80%), Postives = 150/162 (92.59%), Query Frame = 0


Query: 63  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS 122
           DARLRIVSERVDFIDNLIISV+IGPPNS +IKSKDKSTWTAKDVADSVLSDKSALRVTSS
Sbjct: 107 DARLRIVSERVDFIDNLIISVSIGPPNSGFIKSKDKSTWTAKDVADSVLSDKSALRVTSS 166

Query: 123 QRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN 182
           QR++ESSVLD  S+ IDGE YWYYEYLVRKSPTK   ESN+YRHYVASTAERDG+LYS+N
Sbjct: 167 QRMSESSVLDAHSTEIDGETYWYYEYLVRKSPTKTAQESNLYRHYVASTAERDGYLYSLN 226

Query: 183 ASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 225
           ASTL  QWN MGP LQ+TV+SFRLLPPTEDYVPP+KDPWRFW
Sbjct: 227 ASTLNKQWNQMGPLLQKTVDSFRLLPPTEDYVPPFKDPWRFW 268

[Close]

BLAST of Carg08333 vs. TrEMBL
Match: tr|A0A2C9U9H8|A0A2C9U9H8_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G068300 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 8.4e-74
Identity = 136/162 (83.95%), Postives = 150/162 (92.59%), Query Frame = 0


Query: 63  DARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVADSVLSDKSALRVTSS 122
           DARLRIVSERVD IDNLIISVTIGPPN  +IKSKDKSTWTAKDVADSVLSDKSALRVTSS
Sbjct: 135 DARLRIVSERVDIIDNLIISVTIGPPNFQFIKSKDKSTWTAKDVADSVLSDKSALRVTSS 194

Query: 123 QRLAESSVLDTQSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSIN 182
           QRLAESSVLDT +S I+GEPYWYYEYLVRKSPTK   ESN+YRHY++STAER+G+LY++N
Sbjct: 195 QRLAESSVLDTHTSEINGEPYWYYEYLVRKSPTKTAQESNLYRHYISSTAEREGYLYTVN 254

Query: 183 ASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 225
           ASTL  QWN MGPFL++TV SFRLLPPT++YVPPYKDPWRFW
Sbjct: 255 ASTLSKQWNKMGPFLEKTVASFRLLPPTDNYVPPYKDPWRFW 296

The following BLAST results are available for this feature:

BLAST of Carg08333 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929567.1	8.4e-86	99.38	psbP domain-containing protein 5, chloroplastic [Cucurbita moschata]	[more]
XP_022997451.1	2.5e-85	98.77	psbP domain-containing protein 5, chloroplastic [Cucurbita maxima]	[more]
XP_023545350.1	3.2e-85	98.15	psbP domain-containing protein 5, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_008445125.1	2.3e-83	95.68	PREDICTED: psbP domain-containing protein 5, chloroplastic isoform X1 [Cucumis m...	[more]
XP_022131385.1	1.1e-82	95.06	psbP domain-containing protein 5, chloroplastic [Momordica charantia]	[more]

BLAST of Carg08333 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11450.1	7.9e-70	77.16	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

BLAST of Carg08333 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P82715\|PPD5_ARATH	1.4e-68	77.16	PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg08333 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DWE4\|A0A1S4DWE4_CUCME	1.5e-83	95.68	psbP domain-containing protein 5, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S4DVK9\|A0A1S4DVK9_CUCME	5.4e-81	94.44	psbP domain-containing protein 5, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]
tr\|A0A2P5G237\|A0A2P5G237_9ROSA	1.7e-74	85.80	PsbP family OS=Trema orientalis OX=63057 GN=TorRG33x02_003960 PE=4 SV=1	[more]
tr\|A0A2P5BWA2\|A0A2P5BWA2_PARAD	1.7e-74	85.80	PsbP family OS=Parasponia andersonii OX=3476 GN=PanWU01x14_204570 PE=4 SV=1	[more]
tr\|A0A2C9U9H8\|A0A2C9U9H8_MANES	8.4e-74	83.95	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G068300 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0019898	extrinsic component of membrane
GO:0009654	photosystem II oxygen evolving complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR002683	PsbP
IPR016123	Mog1/PsbP_a/b/a-sand

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08333-RA	Carg08333-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	G3DSA:3.40.1000.10		coord: 74..207 e-value: 1.3E-10 score: 43.0
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	SSF55724	Mog1p/PsbP-like	coord: 63..206
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 99..205 e-value: 5.0E-12 score: 46.1
None	No IPR available	PANTHER	PTHR31407:SF7	PSBP DOMAIN-CONTAINING PROTEIN 5, CHLOROPLASTIC	coord: 59..224
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 59..224

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08333	Cla022278	Watermelon (97103) v1	carwmB0058
Carg08333	Csa2G379240	Cucumber (Chinese Long) v2	carcuB0059
Carg08333	MELO3C011212	Melon (DHL92) v3.5.1	carmeB0058
Carg08333	ClCG08G012880	Watermelon (Charleston Gray)	carwcgB0063
Carg08333	CSPI02G22990	Wild cucumber (PI 183967)	carcpiB0063
Carg08333	Cucsa.161970	Cucumber (Gy14) v1	carcgyB0066
Carg08333	CmaCh05G006440	Cucurbita maxima (Rimu)	carcmaB0083
Carg08333	CmoCh05G006730	Cucurbita moschata (Rifu)	carcmoB0087
Carg08333	Lsi08G011480	Bottle gourd (USVL1VR-Ls)	carlsiB056
Carg08333	Cp4.1LG11g05660	Cucurbita pepo (Zucchini)	carcpeB0079
Carg08333	CsGy2G022730	Cucumber (Gy14) v2	carcgybB0060
Carg08333	MELO3C011212.2	Melon (DHL92) v3.6.1	carmedB0059
Carg08333	CsaV3_2G031600	Cucumber (Chinese Long) v3	carcucB0065
Carg08333	Cla97C08G156140	Watermelon (97103) v2	carwmbB0061
Carg08333	Bhi04G000841	Wax gourd	carwgoB0069

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08333	Silver-seed gourd	carcarB067
Carg08333	Silver-seed gourd	carcarB071
Carg08333	Silver-seed gourd	carcarB072
Carg08333	Cucurbita maxima (Rimu)	carcmaB0074
Carg08333	Cucurbita maxima (Rimu)	carcmaB0081
Carg08333	Cucurbita moschata (Rifu)	carcmoB0078
Carg08333	Cucurbita moschata (Rifu)	carcmoB0085
Carg08333	Cucurbita pepo (Zucchini)	carcpeB0082
Carg08333	Cucurbita pepo (Zucchini)	carcpeB0087