CmoCh05G004500 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G004500
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Proteasome subunit beta type (3.4.25.1)
Location	Cmo_Chr05 : 2094315 .. 2096650 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTCGATACCAGTGGTCTTCAAACAACAGCTCCGCTGTTTGGGCCAAAAATGGAGTTCATGGAAGGGTTTGCAGCTGCTCCATCCTTTGAGATCCCTAATTCCAGTGACGTAATTTGTAAATCATTTCTCATACGGCTTTCTGGGCTGCATATTGTTCTGTAGAATTGCTTTTTCTGATTTTGATATTCTCCGTGTTTCAGTTTGATGGCTTTCAGAAAGATGCCATTCAAATGGTAAAGCCAGCAAAAGGAACAACCACACTGGCTTTCATTTTTAAGGAAGGAGTCATGGTTGCTGCTGATTCGCGTGCCAGCATGGGAGGCTACATATGTATGCTAACTTTAATACATGTGTTCTTCAAATAAATTGTAGATTTAGTTTCTAGATGTGGTCTGGTTTGTATACCATGAACTATAAATTGCTATTTTAAGGTACTCTATCCCTTTTAACGATTAGAAGTTTGGGACCCTGCCCTATAGAGAGAATGTTCTTTGCAGCATGATGTGTTTATTCATATTTTCCTGTTAATATTTTTCCCGGATGTCCTCCCTCCCTCCATCCTCCATTGTATTGTTAGTTATTATGTTGTTATTTTGAGTACCTTACTTCGTTTTGAACTAAATATTTGTTTTTAAATATGTTCAGCATCGCAATCTGTGAAGAAAATTATTGAAATTAATCCTTACATGCTTGGCACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCATAGAAATCTCGGTGTCAAGGTAATTGGCCATCATCCAATTACTTGTACGACTATCAGCTTTTATTTAGATTGGGTTACCTGGTATTACAAGCGTTAAGATCTCATTACCTCTACTTTTAGAGTTTTCCAGTCTTAACAACTCAACTTGTATGTGCACAGTCAGATATTTATTCTTCTCTATTCAACCAATTGTTCCTTGCCAAGATGATATTTTGGATTTTTCCCTTGTGGGTTAGCTGATCATAATATTTTACATGATTTAGTGCCGCCGACATGAACTAGCAAATAAGCGTCGGATTTCAGTTGCCGGAGCATCAAAATTACTGGCCAATATTCTGTACTCCTATCGTGGAATGGGTCTCTCTGTTGGGACTATGATTGCTGGATGGGATGAAACAGTAATAATATATTTATTTATTTTATTTTCTCATTTTATGATGAAAATTGTTATGATGATAATTTATTCTCTTATGATCTATAACTTACCTTGATCTGTGCATTTTAGGGTCCTGGTCTATATTACGTAGACAGTGAGGGAGGAAGGCTCAAGGGAACAAGATTTTCTGTTGGATCTGGTTCACCTTATGCCTATGGTGTCTTGGATAATGGGTAAGTGTGATCCTCCGTTATCGGTCTGTCTTCGTTATTTCTCAATCCAGTAATTTTCTTATGAACTTCTTATAATATGTTAGGATAAACAAGGTAGTTTTTGAACCGCCATGATTTGGCATGAATGCCTGGTCACATTTTTGCACATGAAAAAGAATATATCAAAAGAAAGGAAAGATAACTCCATGATGAAAAATTGCGCTGAGGTGGCTAGTATAAAAGAACAAAGAAAAAATACATTCTTTCCTCATACATTTTCTCCCCTTATTTTGAAACAATTGTTCATCTTTTCATCTACTTTAATTTATGTATATTAATTCATGGCAGGTATCGGTACGACCTGTCTGTAGAAGAAGCTGCTGAACTGGCTAGACGAGCGATTTATCATGCAACTTTCCGAGATGGAGCCAGTGGTGGAGTTGCTAGCGGTATGGTATCCCTCTCTGTCAAAATGTTTCCTTGCGTTTGTAATACTCATCTGTGTGCTTGTCCAAATGTTCTCCTCTTGACACTGTGATTTGAATCCCATTGATCAGTTTATTACGTGGGACCAAATGGTTGGAAAAAGCTATCTGGCGATGATGTAGGGGAACTTCATTACAACTACTATCCCGTGACGCCAACTACAGTGGATCAGGAAATGGCTGAAGTAACCGCCGCTTGACGATCCCATATAGACAGACAGACATGTGCCAGGTTGACACATTCTCTCTCCCTATTCATTTGTGCTTCTTCTGGGGGGAACTGATTCTAAAGAGATTGCTTTAGATGTGGAGTGTTTTTAAAGTATTATGGGATCCTTAAAATGTTTGATTGGACCATTCTGTCCTGTTAGTCGAGTTATAATAGCTGCATGGAGAAGAACATTGTTTGCGTTTCCTAAATTTTAGATCCCTTGCTTCATTGGACTACCTTGCTTATTTATCATGCTTGTTCTTTCCAGTTTAGTGAGCGACGTATCTTTTGTGTTAGAACAACTGAAACTGAA

mRNA sequence

ATGAAGCTCGATACCAGTGGTCTTCAAACAACAGCTCCGCTGTTTGGGCCAAAAATGGAGTTCATGGAAGGGTTTGCAGCTGCTCCATCCTTTGAGATCCCTAATTCCAGTGACTTTGATGGCTTTCAGAAAGATGCCATTCAAATGGTAAAGCCAGCAAAAGGAACAACCACACTGGCTTTCATTTTTAAGGAAGGAGTCATGGTTGCTGCTGATTCGCGTGCCAGCATGGGAGGCTACATATCATCGCAATCTGTGAAGAAAATTATTGAAATTAATCCTTACATGCTTGGCACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCATAGAAATCTCGGTGTCAAGATTGGGTTACCTGGTATTACAAGCGTTAAGATCTCATTACCTCTACTTTTAGAGTTTTCCAGTCTTAACAACTCAACTTGTATGTGCACAGTCAGATATTTATTCTTCTCTATTCAACCAATTGTTCCTTGCCAAGATGATATTTTGGATTTTTCCCTTTGCCGCCGACATGAACTAGCAAATAAGCGTCGGATTTCAGTTGCCGGAGCATCAAAATTACTGGCCAATATTCTGTACTCCTATCGTGGAATGGGTCTCTCTGTTGGGACTATGATTGCTGGATGGGATGAAACAGGTCCTGGTCTATATTACGTAGACAGTGAGGGAGGAAGGCTCAAGGGAACAAGATTTTCTGTTGGATCTGGTTCACCTTATGCCTATGGTGTCTTGGATAATGGGTATCGGTACGACCTGTCTGTAGAAGAAGCTGCTGAACTGGCTAGACGAGCGATTTATCATGCAACTTTCCGAGATGGAGCCAGTGGTGGAGTTGCTAGCGTTTATTACGTGGGACCAAATGGTTGGAAAAAGCTATCTGGCGATGATGTAGGGGAACTTCATTACAACTACTATCCCGTGACGCCAACTACAGTGGATCAGGAAATGGCTGAAGTAACCGCCGCTTGACGATCCCATATAGACAGACAGACATGTGCCAGGTTGACACATTCTCTCTCCCTATTCATTTGTGCTTCTTCTGGGGGGAACTGATTCTAAAGAGATTGCTTTAGATGTGGAGTGTTTTTAAAGTATTATGGGATCCTTAAAATGTTTGATTGGACCATTCTGTCCTGTTAGTCGAGTTATAATAGCTGCATGGAGAAGAACATTGTTTGCGTTTCCTAAATTTTAGATCCCTTGCTTCATTGGACTACCTTGCTTATTTATCATGCTTGTTCTTTCCAGTTTAGTGAGCGACGTATCTTTTGTGTTAGAACAACTGAAACTGAA

Coding sequence (CDS)

ATGAAGCTCGATACCAGTGGTCTTCAAACAACAGCTCCGCTGTTTGGGCCAAAAATGGAGTTCATGGAAGGGTTTGCAGCTGCTCCATCCTTTGAGATCCCTAATTCCAGTGACTTTGATGGCTTTCAGAAAGATGCCATTCAAATGGTAAAGCCAGCAAAAGGAACAACCACACTGGCTTTCATTTTTAAGGAAGGAGTCATGGTTGCTGCTGATTCGCGTGCCAGCATGGGAGGCTACATATCATCGCAATCTGTGAAGAAAATTATTGAAATTAATCCTTACATGCTTGGCACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCATAGAAATCTCGGTGTCAAGATTGGGTTACCTGGTATTACAAGCGTTAAGATCTCATTACCTCTACTTTTAGAGTTTTCCAGTCTTAACAACTCAACTTGTATGTGCACAGTCAGATATTTATTCTTCTCTATTCAACCAATTGTTCCTTGCCAAGATGATATTTTGGATTTTTCCCTTTGCCGCCGACATGAACTAGCAAATAAGCGTCGGATTTCAGTTGCCGGAGCATCAAAATTACTGGCCAATATTCTGTACTCCTATCGTGGAATGGGTCTCTCTGTTGGGACTATGATTGCTGGATGGGATGAAACAGGTCCTGGTCTATATTACGTAGACAGTGAGGGAGGAAGGCTCAAGGGAACAAGATTTTCTGTTGGATCTGGTTCACCTTATGCCTATGGTGTCTTGGATAATGGGTATCGGTACGACCTGTCTGTAGAAGAAGCTGCTGAACTGGCTAGACGAGCGATTTATCATGCAACTTTCCGAGATGGAGCCAGTGGTGGAGTTGCTAGCGTTTATTACGTGGGACCAAATGGTTGGAAAAAGCTATCTGGCGATGATGTAGGGGAACTTCATTACAACTACTATCCCGTGACGCCAACTACAGTGGATCAGGAAATGGCTGAAGTAACCGCCGCTTGA

Homology

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BLAST of CmoCh05G004500 vs. Swiss-Prot
Match: PSB5_SPIOL (Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 3.8e-75
Identity = 132/155 (85.16%), Postives = 145/155 (93.55%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CR HELANKRRISV GASKLLANILY+YRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK
Sbjct: 118 CRLHELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 177

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           G RFSVGSGSPYAYGVLDNGY+YD++VEEA+ELARRAIYHAT+RDGASGGV SVY+VGP+
Sbjct: 178 GMRFSVGSGSPYAYGVLDNGYKYDMTVEEASELARRAIYHATYRDGASGGVVSVYHVGPD 237

Query: 291 GWKKLSGDDVGELHYNYYPVTPTTVDQEMAEVTAA 326
           GWKK++GDDVG+LH+ YYPV P TV+QEM EV  A
Sbjct: 238 GWKKVTGDDVGDLHFQYYPVVPATVEQEMVEVVGA 272

[Close]

BLAST of CmoCh05G004500 vs. Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.1e-74
Identity = 133/154 (86.36%), Postives = 144/154 (93.51%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CR HELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRLK
Sbjct: 120 CRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLK 179

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           G RFSVGSGSPYAYGVLD+GY+YD+SVEEA+ELARR+IYHATFRDGASGGVASVY+VGP 
Sbjct: 180 GDRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPE 239

Query: 291 GWKKLSGDDVGELHYNYYPVTPTTVDQEMAEVTA 325
           GW KLSGDDVGELHY+YYPV P T +Q M E TA
Sbjct: 240 GWTKLSGDDVGELHYHYYPVAPATAEQVMEEATA 273

[Close]

BLAST of CmoCh05G004500 vs. Swiss-Prot
Match: PSB5B_ARATH (Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.8e-72
Identity = 129/151 (85.43%), Postives = 141/151 (93.38%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CR HELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRLK
Sbjct: 120 CRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLK 179

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           G RFSVGSGSPYAYGVLD+GY++D+SVEEA+ELARR+IYHATFRDGASGGVASVY+VGP 
Sbjct: 180 GDRFSVGSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPQ 239

Query: 291 GWKKLSGDDVGELHYNYYPVTPTTVDQEMAE 322
           GW KLSGDDVGELHY+YYPV P T +  M E
Sbjct: 240 GWTKLSGDDVGELHYHYYPVAPITAEHVMEE 270

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BLAST of CmoCh05G004500 vs. Swiss-Prot
Match: PSB5_MOUSE (Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 197.2 bits (500), Expect = 2.8e-49
Identity = 93/141 (65.96%), Postives = 112/141 (79.43%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CR +EL NK RISVA ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ 
Sbjct: 122 CRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRIS 181

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           GT FSVGSGS YAYGV+D GY YDL VEEA +LARRAIY AT+RD  SGG  ++Y+V  +
Sbjct: 182 GTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVNLYHVRED 241

Query: 291 GWKKLSGDDVGELHYNYYPVT 312
           GW ++S D+V +LH  Y  V+
Sbjct: 242 GWIRVSSDNVADLHDKYSSVS 262

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BLAST of CmoCh05G004500 vs. Swiss-Prot
Match: PSB5_HUMAN (Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3)

HSP 1 Score: 196.1 bits (497), Expect = 6.2e-49
Identity = 92/142 (64.79%), Postives = 111/142 (78.17%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CR +EL NK RISVA ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ 
Sbjct: 122 CRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRIS 181

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           G  FSVGSGS YAYGV+D GY YDL VE+A +LARRAIY AT+RD  SGG  ++Y+V  +
Sbjct: 182 GATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVRED 241

Query: 291 GWKKLSGDDVGELHYNYYPVTP 313
           GW ++S D+V +LH  Y   TP
Sbjct: 242 GWIRVSSDNVADLHEKYSGSTP 263

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BLAST of CmoCh05G004500 vs. TrEMBL
Match: A0A0A0KDM0_CUCSA (Proteasome subunit beta type OS=Cucumis sativus GN=Csa_6G365720 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.9e-82
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CR H+LANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK
Sbjct: 118 CRLHKLANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 177

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN
Sbjct: 178 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 237

Query: 291 GWKKLSGDDVGELHYNYYPVTPTTVDQEMAEVTAA 326
           GWKKLSGDDVGELHYNYYPVTPTTVDQEM EVTAA
Sbjct: 238 GWKKLSGDDVGELHYNYYPVTPTTVDQEMTEVTAA 272

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BLAST of CmoCh05G004500 vs. TrEMBL
Match: I1JXI9_SOYBN (Proteasome subunit beta type OS=Glycine max GN=GLYMA_04G194700 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 3.0e-79
Identity = 146/155 (94.19%), Postives = 150/155 (96.77%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CR HELANKRRISV GASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK
Sbjct: 118 CRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 177

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           GTRFSVGSGSPYAYGVLD+GYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN
Sbjct: 178 GTRFSVGSGSPYAYGVLDSGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 237

Query: 291 GWKKLSGDDVGELHYNYYPVTPTTVDQEMAEVTAA 326
           GWKKLSGDDVGELHY+YYPVTP+TV+QEM E T A
Sbjct: 238 GWKKLSGDDVGELHYHYYPVTPSTVEQEMVEATGA 272

[Close]

BLAST of CmoCh05G004500 vs. TrEMBL
Match: A0A0B2RHW2_GLYSO (Proteasome subunit beta type OS=Glycine soja GN=glysoja_035899 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 3.0e-79
Identity = 146/155 (94.19%), Postives = 150/155 (96.77%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CR HELANKRRISV GASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK
Sbjct: 118 CRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 177

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           GTRFSVGSGSPYAYGVLD+GYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN
Sbjct: 178 GTRFSVGSGSPYAYGVLDSGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 237

Query: 291 GWKKLSGDDVGELHYNYYPVTPTTVDQEMAEVTAA 326
           GWKKLSGDDVGELHY+YYPVTP+TV+QEM E T A
Sbjct: 238 GWKKLSGDDVGELHYHYYPVTPSTVEQEMVEATGA 272

[Close]

BLAST of CmoCh05G004500 vs. TrEMBL
Match: C6TLJ9_SOYBN (Proteasome subunit beta type OS=Glycine max PE=2 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 3.0e-79
Identity = 146/155 (94.19%), Postives = 150/155 (96.77%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CR HELANKRRISV GASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK
Sbjct: 118 CRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 177

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           GTRFSVGSGSPYAYGVLD+GYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN
Sbjct: 178 GTRFSVGSGSPYAYGVLDSGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 237

Query: 291 GWKKLSGDDVGELHYNYYPVTPTTVDQEMAEVTAA 326
           GWKKLSGDDVGELHY+YYPVTP+TV+QEM E T A
Sbjct: 238 GWKKLSGDDVGELHYHYYPVTPSTVEQEMVEATGA 272

[Close]

BLAST of CmoCh05G004500 vs. TrEMBL
Match: I1KC47_SOYBN (Proteasome subunit beta type OS=Glycine max GN=GLYMA_06G171200 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 3.0e-79
Identity = 146/155 (94.19%), Postives = 150/155 (96.77%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CR HELANKRRISV GASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK
Sbjct: 118 CRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 177

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           GTRFSVGSGSPYAYGVLD+GYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN
Sbjct: 178 GTRFSVGSGSPYAYGVLDSGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 237

Query: 291 GWKKLSGDDVGELHYNYYPVTPTTVDQEMAEVTAA 326
           GWKKLSGDDVGELHY+YYPVTP+TV+QEM E T A
Sbjct: 238 GWKKLSGDDVGELHYHYYPVTPSTVEQEMVEATGA 272

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BLAST of CmoCh05G004500 vs. TAIR10
Match: AT1G13060.2 (AT1G13060.2 20S proteasome beta subunit E1)

HSP 1 Score: 281.6 bits (719), Expect = 6.3e-76
Identity = 133/154 (86.36%), Postives = 144/154 (93.51%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CR HELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRLK
Sbjct: 144 CRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLK 203

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           G RFSVGSGSPYAYGVLD+GY+YD+SVEEA+ELARR+IYHATFRDGASGGVASVY+VGP 
Sbjct: 204 GDRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPE 263

Query: 291 GWKKLSGDDVGELHYNYYPVTPTTVDQEMAEVTA 325
           GW KLSGDDVGELHY+YYPV P T +Q M E TA
Sbjct: 264 GWTKLSGDDVGELHYHYYPVAPATAEQVMEEATA 297

[Close]

BLAST of CmoCh05G004500 vs. TAIR10
Match: AT3G26340.1 (AT3G26340.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein)

HSP 1 Score: 274.2 bits (700), Expect = 1.0e-73
Identity = 129/151 (85.43%), Postives = 141/151 (93.38%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CR HELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRLK
Sbjct: 120 CRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLK 179

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           G RFSVGSGSPYAYGVLD+GY++D+SVEEA+ELARR+IYHATFRDGASGGVASVY+VGP 
Sbjct: 180 GDRFSVGSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPQ 239

Query: 291 GWKKLSGDDVGELHYNYYPVTPTTVDQEMAE 322
           GW KLSGDDVGELHY+YYPV P T +  M E
Sbjct: 240 GWTKLSGDDVGELHYHYYPVAPITAEHVMEE 270

[Close]

BLAST of CmoCh05G004500 vs. NCBI nr
Match: gi|743763818|ref|XP_010912107.1| (PREDICTED: proteasome subunit beta type-5-like [Elaeis guineensis])

HSP 1 Score: 334.7 bits (857), Expect = 1.8e-88
Identity = 184/325 (56.62%), Postives = 211/325 (64.92%), Query Frame = 1


Query: 1   MKLDTSGLQTTAPLFGPKMEFMEGFAAAPSFEIPNSSDFDGFQKDAIQMVKPAKGTTTLA 60
           MKLDTSGLQ+  PL  P  +     +A P+F++P S+DFDGFQKDAIQMVKPAKGTTTLA
Sbjct: 1   MKLDTSGLQSFVPLSAPIDDLCPDLSAPPTFDLPRSADFDGFQKDAIQMVKPAKGTTTLA 60

Query: 61  FIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGVKIGL 120
           FIFKEGV+VAADSRASMGGYISSQ+VKKIIEINPYM+GTMAGGAADCQFWHRNLG+K  L
Sbjct: 61  FIFKEGVIVAADSRASMGGYISSQTVKKIIEINPYMIGTMAGGAADCQFWHRNLGIKCRL 120

Query: 121 PGITSVKISLPLLLEFSSLNNSTCMCTVRYLFFSIQPIVPCQDDILDFSLCRRHELANKR 180
             + + +         S    S  +  + Y +  +   V                     
Sbjct: 121 HELANKR-------RISVAGASKLLANILYSYRGMGLSVGTM------------------ 180

Query: 181 RISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGS 240
              +AG  +  A + Y     G   GT                          FSVGSGS
Sbjct: 181 ---IAGWDETGAGLYYVDSEGGRLKGTR-------------------------FSVGSGS 240

Query: 241 PYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPNGWKKLSGDDV 300
           PYAYGVLDNGYRYD+S+EEAAELARRAIYHATFRD ASGGVASVYYVGP+GWKKLSGDDV
Sbjct: 241 PYAYGVLDNGYRYDMSIEEAAELARRAIYHATFRDAASGGVASVYYVGPSGWKKLSGDDV 272

Query: 301 GELHYNYYPVTPTTVDQEMAEVTAA 326
           GELH+ YYPV P   +QEMAEV+ A
Sbjct: 301 GELHFRYYPVAPNPTEQEMAEVSPA 272

[Close]

BLAST of CmoCh05G004500 vs. NCBI nr
Match: gi|659089408|ref|XP_008445492.1| (PREDICTED: proteasome subunit beta type-5 [Cucumis melo])

HSP 1 Score: 317.8 bits (813), Expect = 2.2e-83
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK
Sbjct: 118 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 177

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN
Sbjct: 178 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 237

Query: 291 GWKKLSGDDVGELHYNYYPVTPTTVDQEMAEVTAA 326
           GWKKLSGDDVGELHYNYYPVTPTTVDQEM EVTAA
Sbjct: 238 GWKKLSGDDVGELHYNYYPVTPTTVDQEMTEVTAA 272

[Close]

BLAST of CmoCh05G004500 vs. NCBI nr
Match: gi|449452891|ref|XP_004144192.1| (PREDICTED: proteasome subunit beta type-5 [Cucumis sativus])

HSP 1 Score: 313.5 bits (802), Expect = 4.2e-82
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CR H+LANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK
Sbjct: 118 CRLHKLANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 177

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN
Sbjct: 178 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 237

Query: 291 GWKKLSGDDVGELHYNYYPVTPTTVDQEMAEVTAA 326
           GWKKLSGDDVGELHYNYYPVTPTTVDQEM EVTAA
Sbjct: 238 GWKKLSGDDVGELHYNYYPVTPTTVDQEMTEVTAA 272

[Close]

BLAST of CmoCh05G004500 vs. NCBI nr
Match: gi|356508794|ref|XP_003523139.1| (PREDICTED: proteasome subunit beta type-5-like [Glycine max])

HSP 1 Score: 303.5 bits (776), Expect = 4.4e-79
Identity = 146/155 (94.19%), Postives = 150/155 (96.77%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CR HELANKRRISV GASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK
Sbjct: 118 CRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 177

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           GTRFSVGSGSPYAYGVLD+GYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN
Sbjct: 178 GTRFSVGSGSPYAYGVLDSGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 237

Query: 291 GWKKLSGDDVGELHYNYYPVTPTTVDQEMAEVTAA 326
           GWKKLSGDDVGELHY+YYPVTP+TV+QEM E T A
Sbjct: 238 GWKKLSGDDVGELHYHYYPVTPSTVEQEMVEATGA 272

[Close]

BLAST of CmoCh05G004500 vs. NCBI nr
Match: gi|734402139|gb|KHN31904.1| (Proteasome subunit beta type-5 [Glycine soja])

HSP 1 Score: 303.5 bits (776), Expect = 4.4e-79
Identity = 146/155 (94.19%), Postives = 150/155 (96.77%), Query Frame = 1


Query: 171 CRRHELANKRRISVAGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 230
           CR HELANKRRISV GASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK
Sbjct: 118 CRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 177

Query: 231 GTRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 290
           GTRFSVGSGSPYAYGVLD+GYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN
Sbjct: 178 GTRFSVGSGSPYAYGVLDSGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPN 237

Query: 291 GWKKLSGDDVGELHYNYYPVTPTTVDQEMAEVTAA 326
           GWKKLSGDDVGELHY+YYPVTP+TV+QEM E T A
Sbjct: 238 GWKKLSGDDVGELHYHYYPVTPSTVEQEMVEATGA 272

The following BLAST results are available for this feature:

BLAST of CmoCh05G004500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSB5_SPIOL	3.8e-75	85.16	Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1	[more]
PSB5A_ARATH	1.1e-74	86.36	Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1	[more]
PSB5B_ARATH	1.8e-72	85.43	Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1	[more]
PSB5_MOUSE	2.8e-49	65.96	Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3	[more]
PSB5_HUMAN	6.2e-49	64.79	Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3	[more]

BLAST of CmoCh05G004500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDM0_CUCSA	2.9e-82	98.06	Proteasome subunit beta type OS=Cucumis sativus GN=Csa_6G365720 PE=3 SV=1	[more]
I1JXI9_SOYBN	3.0e-79	94.19	Proteasome subunit beta type OS=Glycine max GN=GLYMA_04G194700 PE=3 SV=1	[more]
A0A0B2RHW2_GLYSO	3.0e-79	94.19	Proteasome subunit beta type OS=Glycine soja GN=glysoja_035899 PE=3 SV=1	[more]
C6TLJ9_SOYBN	3.0e-79	94.19	Proteasome subunit beta type OS=Glycine max PE=2 SV=1	[more]
I1KC47_SOYBN	3.0e-79	94.19	Proteasome subunit beta type OS=Glycine max GN=GLYMA_06G171200 PE=3 SV=1	[more]

BLAST of CmoCh05G004500 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G13060.2	6.3e-76	86.36	20S proteasome beta subunit E1	[more]
AT3G26340.1	1.0e-73	85.43	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily ...	[more]

BLAST of CmoCh05G004500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|743763818\|ref\|XP_010912107.1\|	1.8e-88	56.62	PREDICTED: proteasome subunit beta type-5-like [Elaeis guineensis]	[more]
gi\|659089408\|ref\|XP_008445492.1\|	2.2e-83	99.35	PREDICTED: proteasome subunit beta type-5 [Cucumis melo]	[more]
gi\|449452891\|ref\|XP_004144192.1\|	4.2e-82	98.06	PREDICTED: proteasome subunit beta type-5 [Cucumis sativus]	[more]
gi\|356508794\|ref\|XP_003523139.1\|	4.4e-79	94.19	PREDICTED: proteasome subunit beta type-5-like [Glycine max]	[more]
gi\|734402139\|gb\|KHN31904.1\|	4.4e-79	94.19	Proteasome subunit beta type-5 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001353	Proteasome_sua/b
IPR016050	Proteasome_bsu_CS
IPR023333	Proteasome_suB-type

Vocabulary: **Molecular Function**
Term	Definition
GO:0004298	threonine-type endopeptidase activity
GO:0004175	endopeptidase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005839	proteasome core complex

Vocabulary: **Biological Process**
Term	Definition
GO:0051603	proteolysis involved in cellular protein catabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051603	proteolysis involved in cellular protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005839	proteasome core complex
molecular_function	GO:0004298	threonine-type endopeptidase activity
molecular_function	GO:0004175	endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G004500.1	CmoCh05G004500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001353	Proteasome, subunit alpha/beta	PFAM	PF00227	Proteasome	coord: 54..117 score: 6.2E-16coord: 171..287 score: 6.3
IPR016050	Proteasome beta-type subunit, conserved site	PROSITE	PS00854	PROTEASOME_BETA_1	coord: 59..106 scor
IPR023333	Proteasome B-type subunit	PROFILE	PS51476	PROTEASOME_BETA_2	coord: 55..287 score: 45
None	No IPR available	PANTHER	PTHR11599	PROTEASOME SUBUNIT ALPHA/BETA	coord: 173..316 score: 2.1E-135coord: 8..119 score: 2.1E
None	No IPR available	PANTHER	PTHR11599:SF63	PROTEASOME SUBUNIT BETA TYPE	coord: 173..316 score: 2.1E-135coord: 8..119 score: 2.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G004500	Cucsa.327620	Cucumber (Gy14) v1	cgycmoB0907
CmoCh05G004500	Cla021999	Watermelon (97103) v1	cmowmB746
CmoCh05G004500	Csa6G365720	Cucumber (Chinese Long) v2	cmocuB796
CmoCh05G004500	MELO3C011449	Melon (DHL92) v3.5.1	cmomeB715
CmoCh05G004500	ClCG08G010150	Watermelon (Charleston Gray)	cmowcgB713
CmoCh05G004500	CSPI06G19400	Wild cucumber (PI 183967)	cmocpiB800
CmoCh05G004500	Lsi08G008740	Bottle gourd (USVL1VR-Ls)	cmolsiB728
CmoCh05G004500	Cp4.1LG11g03740	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G004500	MELO3C011449.2	Melon (DHL92) v3.6.1	cmomedB812
CmoCh05G004500	Cla97C08G152990	Watermelon (97103) v2	cmowmbB800
CmoCh05G004500	Bhi04G000889	Wax gourd	cmowgoB0941
CmoCh05G004500	Bhi04G001151	Wax gourd	cmowgoB0948
CmoCh05G004500	CsGy6G018870	Cucumber (Gy14) v2	cgybcmoB825
CmoCh05G004500	Carg20457	Silver-seed gourd	carcmoB0859
CmoCh05G004500	Carg09287	Silver-seed gourd	carcmoB0196

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G004500	Cucumber (Chinese Long) v3	cmocucB0937
CmoCh05G004500	Cucurbita moschata (Rifu)	cmocmoB150
CmoCh05G004500	Cucurbita maxima (Rimu)	cmacmoB192
CmoCh05G004500	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G004500	Cucurbita pepo (Zucchini)	cmocpeB744