CmoCh05G003590 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh05G003590
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCCR4-NOT transcription complex family protein
LocationCmo_Chr05 : 1626213 .. 1627037 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGATTTTACCGAAAGGCGATTCCATTCAAATCCGTGAGGTTTGGAACGATAATTTGGAGGAGGAGTTTGCGCTAATCCGTGAGATTGTTGATAAATTTAACTACATAGCCATGGATACTGAGTTTCCTGGAGTGGTGCTTCGCCCGTTGGGTGCCTTCAAGAATATCAATGATTACAACTACCAGACTCTTAAGGATAATGTTGACATGTTGAAGTTGATTCAATTGGGTCTTACGTTCTCTGACGAGAATGGAAATCTCCCGACTTGTGGAACCGATAGCTTTTGTATTTGGCAGTTCAATTTCCGCGAGTTCAATATTGTTAGTGATATTTTTGCTAGTGATTCAATTGAGCTTCTGCGCCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGCAGATGTGAACTGGGTTACGTTCCACAGTGGGTATGATTTCGGTTACTTGCTGAAATTGCTCACTTGCCGAGGCTTACCAGAAAAGCAGGACGGATTCTTTGACCTGATCAATGTCTATTTCCCAGTGGTTTATGATATCAAGCATTTGATGAAGTTCTGCAACAGTCTTCATGGTGGGCTGAACAAGCTTGCGGAGTTATTAGAAGTGGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTCTACTTTTAGGAAGTTAAGGAATACCTTTTTCAATGGATCTATACAGAAATACGCAGGTGTTTTGTATGGTCTCGGTGTTGAAAATGGACAGCGTACTAATTGA

mRNA sequence

ATGTCGATTTTACCGAAAGGCGATTCCATTCAAATCCGTGAGGTTTGGAACGATAATTTGGAGGAGGAGTTTGCGCTAATCCGTGAGATTGTTGATAAATTTAACTACATAGCCATGGATACTGAGTTTCCTGGAGTGGTGCTTCGCCCGTTGGGTGCCTTCAAGAATATCAATGATTACAACTACCAGACTCTTAAGGATAATGTTGACATGTTGAAGTTGATTCAATTGGGTCTTACGTTCTCTGACGAGAATGGAAATCTCCCGACTTGTGGAACCGATAGCTTTTGTATTTGGCAGTTCAATTTCCGCGAGTTCAATATTGTTAGTGATATTTTTGCTAGTGATTCAATTGAGCTTCTGCGCCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGCAGATGTGAACTGGGTTACGTTCCACAGTGGGTATGATTTCGGTTACTTGCTGAAATTGCTCACTTGCCGAGGCTTACCAGAAAAGCAGGACGGATTCTTTGACCTGATCAATGTCTATTTCCCAGTGGTTTATGATATCAAGCATTTGATGAAGTTCTGCAACAGTCTTCATGGTGGGCTGAACAAGCTTGCGGAGTTATTAGAAGTGGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTCTACTTTTAGGAAGTTAAGGAATACCTTTTTCAATGGATCTATACAGAAATACGCAGGTGTTTTGTATGGTCTCGGTGTTGAAAATGGACAGCGTACTAATTGA

Coding sequence (CDS)

ATGTCGATTTTACCGAAAGGCGATTCCATTCAAATCCGTGAGGTTTGGAACGATAATTTGGAGGAGGAGTTTGCGCTAATCCGTGAGATTGTTGATAAATTTAACTACATAGCCATGGATACTGAGTTTCCTGGAGTGGTGCTTCGCCCGTTGGGTGCCTTCAAGAATATCAATGATTACAACTACCAGACTCTTAAGGATAATGTTGACATGTTGAAGTTGATTCAATTGGGTCTTACGTTCTCTGACGAGAATGGAAATCTCCCGACTTGTGGAACCGATAGCTTTTGTATTTGGCAGTTCAATTTCCGCGAGTTCAATATTGTTAGTGATATTTTTGCTAGTGATTCAATTGAGCTTCTGCGCCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGCAGATGTGAACTGGGTTACGTTCCACAGTGGGTATGATTTCGGTTACTTGCTGAAATTGCTCACTTGCCGAGGCTTACCAGAAAAGCAGGACGGATTCTTTGACCTGATCAATGTCTATTTCCCAGTGGTTTATGATATCAAGCATTTGATGAAGTTCTGCAACAGTCTTCATGGTGGGCTGAACAAGCTTGCGGAGTTATTAGAAGTGGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTCTACTTTTAGGAAGTTAAGGAATACCTTTTTCAATGGATCTATACAGAAATACGCAGGTGTTTTGTATGGTCTCGGTGTTGAAAATGGACAGCGTACTAATTGA
Homology
[Close]
BLAST of CmoCh05G003590 vs. Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 447.2 bits (1149), Expect = 1.3e-124
Identity = 208/272 (76.47%), Postives = 241/272 (88.60%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWNDNLE E ALIRE+VD F ++AMDTEFPG+V RP+G FK   +Y
Sbjct: 1   MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDS-FCIWQFNFREFNIVSDIFASDSIE 120
           +Y+TLK NV++LK+IQLGLTFSDE GNLPTCGTD+ +CIWQFNFREF++ SDI+A+DSIE
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGL 180
           LLRQ GIDF KNNE GID  RF ELLMSSG+VLN +V+WVTFHSGYDFGYLLKLLTC+ L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180

Query: 181 PEKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           PE Q GFF++I+VYFP VYDIKHLMKFCNSLHGGLNKLAELL+VER+G+CHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240

Query: 241 ASTFRKLRNTFFNGSIQKYAGVLYGLGVENGQ 272
           + TFRKL+  FF GS++KY+GVLYGLGVENGQ
Sbjct: 241 SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQ 272

[Close]
BLAST of CmoCh05G003590 vs. Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 5.4e-123
Identity = 204/271 (75.28%), Postives = 235/271 (86.72%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWNDNL+EE  LIR++VD F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           +Y+TLK NV++LK+IQLGLTFS+E GNLPTCGTD +CIWQFNFREF++ SDIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           L+Q GID  KN  +GID  RF ELLMSSG+VLN +V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + Q  FF LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQ 272
            TFRKL+  FF G + KY+GVLYGLGVENGQ
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENGQ 271

[Close]
BLAST of CmoCh05G003590 vs. Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 1.9e-120
Identity = 203/268 (75.75%), Postives = 231/268 (86.19%), Query Frame = 1 

Query: 6   KGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDYNYQTL 65
           K DSI IREVW+ NL EEFALIREIVDKF+YIAMDTEFPGVVL+P+  FK  ND NY+TL
Sbjct: 6   KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65

Query: 66  KDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIELLRQCG 125
           K+NVD+LKLIQ+GLTFSDENGNLPTCGTD FCIWQFNFREFNI  DI+AS+SIELLRQCG
Sbjct: 66  KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125

Query: 126 IDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLPEKQDG 185
           IDF+KN E+GIDV RFGEL+MSSG+VLN  ++WVTFH GYDFGYL+KLLTC+ LP KQ  
Sbjct: 126 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 185

Query: 186 FFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTASTFRK 245
           FF L+ VYFP VYDIKHLM FCN L GGLN+LAEL+ VER+G+CHQAGSDSLLT  +FRK
Sbjct: 186 FFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 245

Query: 246 LRNTFFNGSIQKYAGVLYGLGVENGQRT 274
           L+  +F GS +KY GVLYGLGVE+G  T
Sbjct: 246 LKERYFPGSTEKYTGVLYGLGVEDGTTT 273

[Close]
BLAST of CmoCh05G003590 vs. Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=1 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 3.5e-98
Identity = 170/264 (64.39%), Postives = 207/264 (78.41%), Query Frame = 1 

Query: 8   DSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNIN------DYN 67
           D+I+IREVWN NLE+E ALI + +D F Y+AMDTEFPG+V + + A  N N      +YN
Sbjct: 12  DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN 71

Query: 68  YQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIELL 127
           Y TLK NV+MLKLIQLGLT SDE GNLPTCGT+  CIWQFNFREFN++SD+FA DSIELL
Sbjct: 72  YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELL 131

Query: 128 RQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLPE 187
           R+  ID +KNNE G+D  RF ELLM SGVVLN  ++WVTFH GYDFGYLLKLL+ + LPE
Sbjct: 132 RKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPE 191

Query: 188 KQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTAS 247
           +   FFD +  +FPVVYDIK+LM FC +L+GGL K+AELL V+R+G+ HQAGSDSLLT  
Sbjct: 192 EISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLR 251

Query: 248 TFRKLRNTFFNGSIQKYAGVLYGL 266
           TF K++  FF GS+ KY+G L+GL
Sbjct: 252 TFIKMKEFFFTGSLLKYSGFLFGL 275

[Close]
BLAST of CmoCh05G003590 vs. Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.3e-81
Identity = 152/269 (56.51%), Postives = 195/269 (72.49%), Query Frame = 1 

Query: 9   SIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDYNYQTLKDN 68
           S +I EVW  NL+EE   IR+++ K+NY+AMDTEFPGVV RP+G F++  DY YQ L+ N
Sbjct: 9   SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68

Query: 69  VDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIELLRQCGIDF 128
           VD+LK+IQLGLTF +E G  P  GT +   WQFNF+ FN+  D++A DSIELL   GI F
Sbjct: 69  VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 128

Query: 129 QKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLPEKQDGFFD 188
           +K+ EEGI+   F ELLM+SGVVL   V W++FHSGYDFGYL+K+LT   LPE++  FF+
Sbjct: 129 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 188

Query: 189 LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTASTFRKLRN 248
           ++ ++FPV+YD+K+LMK C +L GGL ++AE LE+ERIG  HQAGSDSLLT   F K+R 
Sbjct: 189 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 248

Query: 249 TFFNGSIQ--KYAGVLYGLG-----VENG 271
            FF   I   KY G LYGLG     V+NG
Sbjct: 249 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272

[Close]
BLAST of CmoCh05G003590 vs. TrEMBL
Match: A0A0A0LMH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382610 PE=4 SV=1)

HSP 1 Score: 537.3 bits (1383), Expect = 1.1e-149
Identity = 257/274 (93.80%), Postives = 264/274 (96.35%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWN NLEEEFALIR IVDKFNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NY+TLKDNV+MLKLIQLGLTFSDE+GNLPTCGTD FCIWQFNFREFNI SDIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
             Q GFF+LINVYFPV+YDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVLYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
            TFRKLR+TFFNGSIQKYAGVLYGLGVENGQRTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]
BLAST of CmoCh05G003590 vs. TrEMBL
Match: W9QRX8_9ROSA (Putative CCR4-associated factor 1-7-like protein OS=Morus notabilis GN=L484_014468 PE=4 SV=1)

HSP 1 Score: 520.0 bits (1338), Expect = 1.7e-144
Identity = 247/276 (89.49%), Postives = 261/276 (94.57%), Query Frame = 1 

Query: 1   MSILPK--GDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNIN 60
           MSIL K  GDSIQIREVWNDNLEEEFALIREIVDK+NY+AMDTEFPGVVLRP+G FKNIN
Sbjct: 1   MSILTKGDGDSIQIREVWNDNLEEEFALIREIVDKYNYVAMDTEFPGVVLRPVGNFKNIN 60

Query: 61  DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSI 120
           DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD FCIWQFNFREFNI  DIFASDSI
Sbjct: 61  DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSI 120

Query: 121 ELLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRG 180
           ELLRQCGIDF+KNNE+GIDVNRFGELLMSSG+VLN  V+WVTFHSGYDFGYLLKLLTC+ 
Sbjct: 121 ELLRQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCQS 180

Query: 181 LPEKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLL 240
           LP+ Q GFFDLINVYFP+VYDIKHLMKFCNSLHGGLNKLAELLEVER+GVCHQAGSDSLL
Sbjct: 181 LPDTQAGFFDLINVYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLL 240

Query: 241 TASTFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
           T+ TFRKLR+TFFNGS +KYAGVLYGLGVENGQ TN
Sbjct: 241 TSCTFRKLRDTFFNGSTEKYAGVLYGLGVENGQTTN 276

[Close]
BLAST of CmoCh05G003590 vs. TrEMBL
Match: A0A067KMK9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07101 PE=4 SV=1)

HSP 1 Score: 519.6 bits (1337), Expect = 2.3e-144
Identity = 247/275 (89.82%), Postives = 259/275 (94.18%), Query Frame = 1 

Query: 1   MSILPKGD-SIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNIND 60
           MSI+PK D SIQIREVWNDNLEEEFALIREIVD+FNY+AMDTEFPGVVLRP+G FKNIND
Sbjct: 1   MSIIPKNDDSIQIREVWNDNLEEEFALIREIVDQFNYVAMDTEFPGVVLRPVGNFKNIND 60

Query: 61  YNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIE 120
           YNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD FCIWQFNFREFNI  DIFASDSIE
Sbjct: 61  YNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGL 180
           LLRQCGIDF+KNNE+GIDVNRFGELLMSSGVVLN  V WVTFHSGYDFGYLLKLLTCR L
Sbjct: 121 LLRQCGIDFKKNNEKGIDVNRFGELLMSSGVVLNDSVYWVTFHSGYDFGYLLKLLTCRSL 180

Query: 181 PEKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           P+ Q GFFDLIN+YFPVVYDIKHLMKFCNSLHGGLNKLAELLEVER+GVCHQAGSDSLLT
Sbjct: 181 PDTQAGFFDLINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLT 240

Query: 241 ASTFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
           + TFRKLR+ FFNGS +KYAGVLYGLGVENGQ TN
Sbjct: 241 SCTFRKLRDNFFNGSAEKYAGVLYGLGVENGQNTN 275

[Close]
BLAST of CmoCh05G003590 vs. TrEMBL
Match: B9RNX3_RICCO (Ccr4-associated factor, putative OS=Ricinus communis GN=RCOM_0921770 PE=4 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 5.1e-144
Identity = 241/273 (88.28%), Postives = 257/273 (94.14%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSI+PKGDSI IREVWNDNLEEEF LIREIVD+FNY+AMDTEFPGVVLRP+G FKNINDY
Sbjct: 1   MSIIPKGDSIHIREVWNDNLEEEFTLIREIVDQFNYVAMDTEFPGVVLRPVGNFKNINDY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD FCIWQFNFREFNI  DIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDF+KNNE+GIDVNRFGEL+MSSG+VLN  V+WVTFHSGYDFGYLLKLLTCR LP
Sbjct: 121 LRQCGIDFKKNNEKGIDVNRFGELMMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCRSLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + Q GFFDLIN YFP+VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DTQAGFFDLINTYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRT 274
            TFRKLR+ FFNGS +KYAGVLYGLGVENGQ T
Sbjct: 241 CTFRKLRDNFFNGSTEKYAGVLYGLGVENGQNT 273

[Close]
BLAST of CmoCh05G003590 vs. TrEMBL
Match: A0A0D2UK39_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G244300 PE=4 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 1.5e-143
Identity = 240/274 (87.59%), Postives = 258/274 (94.16%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS LPKG+S+ IREVWNDNLEEEFALIREIVD +NY+AMDTEFPGVVLRP+G FKNINDY
Sbjct: 1   MSGLPKGESVHIREVWNDNLEEEFALIREIVDTYNYVAMDTEFPGVVLRPVGTFKNINDY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFN+  DIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNLSEDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDF+KNNE+GIDV RFGELLMSSGVVLN DV+WVTFHSGYDFGYLLKLLTCR LP
Sbjct: 121 LRQCGIDFKKNNEKGIDVTRFGELLMSSGVVLNDDVHWVTFHSGYDFGYLLKLLTCRSLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + Q GFFDLI +YFP+VYDIKH+MKFCNSLHGGLNKLAELLEVER+GVCHQAGSDSLLT+
Sbjct: 181 DSQAGFFDLIKIYFPMVYDIKHMMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTS 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
            TFRKLR+ FFNGS +KYAGVLYGLGV+NGQ TN
Sbjct: 241 CTFRKLRDNFFNGSTEKYAGVLYGLGVQNGQNTN 274

[Close]
BLAST of CmoCh05G003590 vs. TAIR10
Match: AT2G32070.1 (AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 447.2 bits (1149), Expect = 7.3e-126
Identity = 208/272 (76.47%), Postives = 241/272 (88.60%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWNDNLE E ALIRE+VD F ++AMDTEFPG+V RP+G FK   +Y
Sbjct: 1   MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDS-FCIWQFNFREFNIVSDIFASDSIE 120
           +Y+TLK NV++LK+IQLGLTFSDE GNLPTCGTD+ +CIWQFNFREF++ SDI+A+DSIE
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGL 180
           LLRQ GIDF KNNE GID  RF ELLMSSG+VLN +V+WVTFHSGYDFGYLLKLLTC+ L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180

Query: 181 PEKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           PE Q GFF++I+VYFP VYDIKHLMKFCNSLHGGLNKLAELL+VER+G+CHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240

Query: 241 ASTFRKLRNTFFNGSIQKYAGVLYGLGVENGQ 272
           + TFRKL+  FF GS++KY+GVLYGLGVENGQ
Sbjct: 241 SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQ 272

[Close]
BLAST of CmoCh05G003590 vs. TAIR10
Match: AT1G80780.3 (AT1G80780.3 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 438.0 bits (1125), Expect = 4.4e-123
Identity = 202/269 (75.09%), Postives = 233/269 (86.62%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWNDNL+EE  LIR++VD F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           +Y+TLK NV++LK+IQLGLTFS+E GNLPTCGTD +CIWQFNFREF++ SDIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           L+Q GID  KN  +GID  RF ELLMSSG+VLN +V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + Q  FF LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVEN 270
            TFRKL+  FF G + KY+GVLYGLGVEN
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVEN 269

[Close]
BLAST of CmoCh05G003590 vs. TAIR10
Match: AT5G10960.1 (AT5G10960.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 433.3 bits (1113), Expect = 1.1e-121
Identity = 203/268 (75.75%), Postives = 231/268 (86.19%), Query Frame = 1 

Query: 6   KGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDYNYQTL 65
           K DSI IREVW+ NL EEFALIREIVDKF+YIAMDTEFPGVVL+P+  FK  ND NY+TL
Sbjct: 6   KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65

Query: 66  KDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIELLRQCG 125
           K+NVD+LKLIQ+GLTFSDENGNLPTCGTD FCIWQFNFREFNI  DI+AS+SIELLRQCG
Sbjct: 66  KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125

Query: 126 IDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLPEKQDG 185
           IDF+KN E+GIDV RFGEL+MSSG+VLN  ++WVTFH GYDFGYL+KLLTC+ LP KQ  
Sbjct: 126 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 185

Query: 186 FFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTASTFRK 245
           FF L+ VYFP VYDIKHLM FCN L GGLN+LAEL+ VER+G+CHQAGSDSLLT  +FRK
Sbjct: 186 FFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 245

Query: 246 LRNTFFNGSIQKYAGVLYGLGVENGQRT 274
           L+  +F GS +KY GVLYGLGVE+G  T
Sbjct: 246 LKERYFPGSTEKYTGVLYGLGVEDGTTT 273

[Close]
BLAST of CmoCh05G003590 vs. TAIR10
Match: AT1G15920.2 (AT1G15920.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 359.4 bits (921), Expect = 2.0e-99
Identity = 170/264 (64.39%), Postives = 207/264 (78.41%), Query Frame = 1 

Query: 8   DSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNIN------DYN 67
           D+I+IREVWN NLE+E ALI + +D F Y+AMDTEFPG+V + + A  N N      +YN
Sbjct: 12  DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN 71

Query: 68  YQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIELL 127
           Y TLK NV+MLKLIQLGLT SDE GNLPTCGT+  CIWQFNFREFN++SD+FA DSIELL
Sbjct: 72  YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELL 131

Query: 128 RQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLPE 187
           R+  ID +KNNE G+D  RF ELLM SGVVLN  ++WVTFH GYDFGYLLKLL+ + LPE
Sbjct: 132 RKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPE 191

Query: 188 KQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTAS 247
           +   FFD +  +FPVVYDIK+LM FC +L+GGL K+AELL V+R+G+ HQAGSDSLLT  
Sbjct: 192 EISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLR 251

Query: 248 TFRKLRNTFFNGSIQKYAGVLYGL 266
           TF K++  FF GS+ KY+G L+GL
Sbjct: 252 TFIKMKEFFFTGSLLKYSGFLFGL 275

[Close]
BLAST of CmoCh05G003590 vs. TAIR10
Match: AT3G44260.1 (AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 280.4 bits (716), Expect = 1.2e-75
Identity = 146/269 (54.28%), Postives = 188/269 (69.89%), Query Frame = 1 

Query: 5   PKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDYNYQT 64
           P G ++  REVW +NLE EF LI EI+D + +I+MDTEFPGV+ +    F N +D  Y  
Sbjct: 12  PDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-YTL 71

Query: 65  LKDNVDMLKLIQLGLTFSDENGNLPTCGTDSF--CIWQFNFREFNIVSDIFASDSIELLR 124
           LK NVD L LIQ+GLT SD NGNLP  G D     IW+FNFR+F++  D  A DSIELLR
Sbjct: 72  LKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLR 131

Query: 125 QCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLPEK 184
           + GIDF++N  +G++  RF EL+MSSG+V N +V+WVTFHS YDFGYL+K+LT R LP  
Sbjct: 132 RQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGA 191

Query: 185 QDGFFDLINVYF-PVVYDIKHLMKFC-NSLHGGLNKLAELLEVER-IGVCHQAGSDSLLT 244
              F  ++ V F   VYD+KH+MKFC   L GGL+++A  LEV R +G CHQAGSDSLLT
Sbjct: 192 LGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLT 251

Query: 245 ASTFRKLRNTFF-NGSIQKYAGVLYGLGV 268
              F+++R+ +F     +K+AGVLYGL V
Sbjct: 252 WHAFQRMRDLYFVQDGPEKHAGVLYGLEV 279

[Close]
BLAST of CmoCh05G003590 vs. NCBI nr
Match: gi|659088972|ref|XP_008445259.1| (PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis melo])

HSP 1 Score: 538.5 bits (1386), Expect = 6.8e-150
Identity = 258/274 (94.16%), Postives = 264/274 (96.35%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWN NLEEEFALIR IVDKFNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NY+TLKDNV+MLKLIQLGLTFSDE+GNLPTCGTD FCIWQFNFREFNI SDIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
             Q GFF+LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
            TFRKLR+TFFNGSIQKYAGVLYGLGVENGQRTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]
BLAST of CmoCh05G003590 vs. NCBI nr
Match: gi|449441868|ref|XP_004138704.1| (PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis sativus])

HSP 1 Score: 537.3 bits (1383), Expect = 1.5e-149
Identity = 257/274 (93.80%), Postives = 264/274 (96.35%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWN NLEEEFALIR IVDKFNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NY+TLKDNV+MLKLIQLGLTFSDE+GNLPTCGTD FCIWQFNFREFNI SDIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
             Q GFF+LINVYFPV+YDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVLYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
            TFRKLR+TFFNGSIQKYAGVLYGLGVENGQRTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]
BLAST of CmoCh05G003590 vs. NCBI nr
Match: gi|703074973|ref|XP_010089956.1| (putative CCR4-associated factor 1-7-like protein [Morus notabilis])

HSP 1 Score: 520.0 bits (1338), Expect = 2.5e-144
Identity = 247/276 (89.49%), Postives = 261/276 (94.57%), Query Frame = 1 

Query: 1   MSILPK--GDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNIN 60
           MSIL K  GDSIQIREVWNDNLEEEFALIREIVDK+NY+AMDTEFPGVVLRP+G FKNIN
Sbjct: 1   MSILTKGDGDSIQIREVWNDNLEEEFALIREIVDKYNYVAMDTEFPGVVLRPVGNFKNIN 60

Query: 61  DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSI 120
           DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD FCIWQFNFREFNI  DIFASDSI
Sbjct: 61  DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSI 120

Query: 121 ELLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRG 180
           ELLRQCGIDF+KNNE+GIDVNRFGELLMSSG+VLN  V+WVTFHSGYDFGYLLKLLTC+ 
Sbjct: 121 ELLRQCGIDFKKNNEKGIDVNRFGELLMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCQS 180

Query: 181 LPEKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLL 240
           LP+ Q GFFDLINVYFP+VYDIKHLMKFCNSLHGGLNKLAELLEVER+GVCHQAGSDSLL
Sbjct: 181 LPDTQAGFFDLINVYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLL 240

Query: 241 TASTFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
           T+ TFRKLR+TFFNGS +KYAGVLYGLGVENGQ TN
Sbjct: 241 TSCTFRKLRDTFFNGSTEKYAGVLYGLGVENGQTTN 276

[Close]
BLAST of CmoCh05G003590 vs. NCBI nr
Match: gi|802626869|ref|XP_012076450.1| (PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas])

HSP 1 Score: 519.6 bits (1337), Expect = 3.3e-144
Identity = 247/275 (89.82%), Postives = 259/275 (94.18%), Query Frame = 1 

Query: 1   MSILPKGD-SIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNIND 60
           MSI+PK D SIQIREVWNDNLEEEFALIREIVD+FNY+AMDTEFPGVVLRP+G FKNIND
Sbjct: 1   MSIIPKNDDSIQIREVWNDNLEEEFALIREIVDQFNYVAMDTEFPGVVLRPVGNFKNIND 60

Query: 61  YNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIE 120
           YNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD FCIWQFNFREFNI  DIFASDSIE
Sbjct: 61  YNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGL 180
           LLRQCGIDF+KNNE+GIDVNRFGELLMSSGVVLN  V WVTFHSGYDFGYLLKLLTCR L
Sbjct: 121 LLRQCGIDFKKNNEKGIDVNRFGELLMSSGVVLNDSVYWVTFHSGYDFGYLLKLLTCRSL 180

Query: 181 PEKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           P+ Q GFFDLIN+YFPVVYDIKHLMKFCNSLHGGLNKLAELLEVER+GVCHQAGSDSLLT
Sbjct: 181 PDTQAGFFDLINMYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLT 240

Query: 241 ASTFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
           + TFRKLR+ FFNGS +KYAGVLYGLGVENGQ TN
Sbjct: 241 SCTFRKLRDNFFNGSAEKYAGVLYGLGVENGQNTN 275

[Close]
BLAST of CmoCh05G003590 vs. NCBI nr
Match: gi|1000974262|ref|XP_015572459.1| (PREDICTED: probable CCR4-associated factor 1 homolog 7 [Ricinus communis])

HSP 1 Score: 518.5 bits (1334), Expect = 7.3e-144
Identity = 241/273 (88.28%), Postives = 257/273 (94.14%), Query Frame = 1 

Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSI+PKGDSI IREVWNDNLEEEF LIREIVD+FNY+AMDTEFPGVVLRP+G FKNINDY
Sbjct: 1   MSIIPKGDSIHIREVWNDNLEEEFTLIREIVDQFNYVAMDTEFPGVVLRPVGNFKNINDY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD FCIWQFNFREFNI  DIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNISEDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDF+KNNE+GIDVNRFGEL+MSSG+VLN  V+WVTFHSGYDFGYLLKLLTCR LP
Sbjct: 121 LRQCGIDFKKNNEKGIDVNRFGELMMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCRSLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + Q GFFDLIN YFP+VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DTQAGFFDLINTYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRT 274
            TFRKLR+ FFNGS +KYAGVLYGLGVENGQ T
Sbjct: 241 CTFRKLRDNFFNGSTEKYAGVLYGLGVENGQNT 273

The following BLAST results are available for this feature:
BLAST of CmoCh05G003590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CAF1G_ARATH1.3e-12476.47Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE... [more]
CAF1F_ARATH5.4e-12375.28Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE... [more]
CAF1J_ARATH1.9e-12075.75Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 ... [more]
CAF1B_ARATH3.5e-9864.39Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE... [more]
CNOT7_BOVIN2.3e-8156.51CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1[more]
BLAST of CmoCh05G003590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMH2_CUCSA1.1e-14993.80Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382610 PE=4 SV=1[more]
W9QRX8_9ROSA1.7e-14489.49Putative CCR4-associated factor 1-7-like protein OS=Morus notabilis GN=L484_0144... [more]
A0A067KMK9_JATCU2.3e-14489.82Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07101 PE=4 SV=1[more]
B9RNX3_RICCO5.1e-14488.28Ccr4-associated factor, putative OS=Ricinus communis GN=RCOM_0921770 PE=4 SV=1[more]
A0A0D2UK39_GOSRA1.5e-14387.59Uncharacterized protein OS=Gossypium raimondii GN=B456_010G244300 PE=4 SV=1[more]
BLAST of CmoCh05G003590 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G32070.17.3e-12676.47 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT1G80780.34.4e-12375.09 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT5G10960.11.1e-12175.75 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT1G15920.22.0e-9964.39 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT3G44260.11.2e-7554.28 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of CmoCh05G003590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088972|ref|XP_008445259.1|6.8e-15094.16PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis melo][more]
gi|449441868|ref|XP_004138704.1|1.5e-14993.80PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis sativus][more]
gi|703074973|ref|XP_010089956.1|2.5e-14489.49putative CCR4-associated factor 1-7-like protein [Morus notabilis][more]
gi|802626869|ref|XP_012076450.1|3.3e-14489.82PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas][more]
gi|1000974262|ref|XP_015572459.1|7.3e-14488.28PREDICTED: probable CCR4-associated factor 1 homolog 7 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006941RNase_CAF1
IPR012337RNaseH-like_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0008150 biological_process
biological_process GO:0017148 negative regulation of translation
biological_process GO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0007033 vacuole organization
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0007030 Golgi organization
biological_process GO:0000902 cell morphogenesis
biological_process GO:0016049 cell growth
cellular_component GO:0030015 CCR4-NOT core complex
cellular_component GO:0000932 cytoplasmic mRNA processing body
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G003590.1CmoCh05G003590.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 15..136
score: 3.1E-11coord: 160..243
score: 1.
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 5..267
score: 6.3E
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 12..265
score: 1.66
NoneNo IPR availablePANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 1..274
score: 2.1E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh05G003590Cucsa.162770Cucumber (Gy14) v1cgycmoB0463
CmoCh05G003590CmaCh12G003600Cucurbita maxima (Rimu)cmacmoB199
CmoCh05G003590CmaCh05G003560Cucurbita maxima (Rimu)cmacmoB786
CmoCh05G003590Cla022358Watermelon (97103) v1cmowmB748
CmoCh05G003590Csa2G382590Cucumber (Chinese Long) v2cmocuB785
CmoCh05G003590MELO3C011292Melon (DHL92) v3.5.1cmomeB716
CmoCh05G003590ClCG08G013650Watermelon (Charleston Gray)cmowcgB716
CmoCh05G003590CSPI02G23860Wild cucumber (PI 183967)cmocpiB788
CmoCh05G003590Lsi08G012400Bottle gourd (USVL1VR-Ls)cmolsiB731
CmoCh05G003590Cp4.1LG11g02960Cucurbita pepo (Zucchini)cmocpeB720
CmoCh05G003590Cp4.1LG07g03270Cucurbita pepo (Zucchini)cmocpeB750
CmoCh05G003590MELO3C011292.2Melon (DHL92) v3.6.1cmomedB813
CmoCh05G003590CsaV3_2G032410Cucumber (Chinese Long) v3cmocucB0925
CmoCh05G003590Cla97C08G157060Watermelon (97103) v2cmowmbB802
CmoCh05G003590Bhi04G000032Wax gourdcmowgoB0945
CmoCh05G003590CsGy2G023610Cucumber (Gy14) v2cgybcmoB244
CmoCh05G003590Carg03951Silver-seed gourdcarcmoB1319
CmoCh05G003590Carg09359Silver-seed gourdcarcmoB0196
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh05G003590CmoCh12G003130Cucurbita moschata (Rifu)cmocmoB156
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh05G003590Cucumber (Chinese Long) v3cmocucB0932
CmoCh05G003590Watermelon (97103) v2cmowmbB790
CmoCh05G003590Wax gourdcmowgoB0965
CmoCh05G003590Cucurbita moschata (Rifu)cmocmoB032
CmoCh05G003590Cucumber (Gy14) v1cgycmoB0749
CmoCh05G003590Cucurbita maxima (Rimu)cmacmoB061
CmoCh05G003590Wild cucumber (PI 183967)cmocpiB794
CmoCh05G003590Cucumber (Chinese Long) v2cmocuB791
CmoCh05G003590Melon (DHL92) v3.5.1cmomeB731
CmoCh05G003590Watermelon (Charleston Gray)cmowcgB704
CmoCh05G003590Watermelon (97103) v1cmowmB751
CmoCh05G003590Cucurbita pepo (Zucchini)cmocpeB738
CmoCh05G003590Bottle gourd (USVL1VR-Ls)cmolsiB719
CmoCh05G003590Cucumber (Gy14) v2cgybcmoB532
CmoCh05G003590Melon (DHL92) v3.6.1cmomedB828
CmoCh05G003590Silver-seed gourdcarcmoB0878