CmoCh05G002320 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G002320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	NAC domain-containing protein 78
Location	Cmo_Chr05 : 995513 .. 999103 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATGTATCCACCCGCTCTCTCTCATGACAAACGAGGAGACTTCAGCGAATCGTCTTTCCAGCTCTCTGATCGACGATCTTCCAGGTTGGGATTCTCTGATCCGCCCCCATTTTGTGAATATTTGTACTCGTATCTACTATTCTCTCAATCTTTACTTGATTTTTCCGTTCTGTTTGATTCTTCGCTGAAAATCATGTTTGGATGGTGATGATTGAAGGATCGAGTGGTGGGTTTAGGGTTTAGGGTTTATTTCTTGTAGTTGATCGGTGTGTTTGTTTCCTCTCTGTCTTTATGATTGAAATTATGTAATGTAATGTAATGATCGGCTAACTTGTTGTTGATTTTGAACGATACGTGATTTGGGTTTTATGAACCCCAAATCAGCTATTTGGAGATGTGGCCTGCATGCAATTGTTGGGTGGGAACATTTATATCTGATCTTCTGTGTCGCTTATATTACAGCTCGTTGCAGCTATTTTTTGAATTAACAGAGTGATTTTTGGACCTTTTTTTTTGTTCTCTTATTTCTTTCTTTACTGATGAATCGATATGTACGCACTGTGTGGCTTGATCATTTTTGCCTCATCATCTGAATTATTTGTTCATGTAAGAGAGATTCCATTGCTTATAGGTGATCAATTCGTAGTCGAGATTGGATTGATTTGATTTGAAGCTTAATTGAGTTTCGTTTTGTGATTTCTTTTGGAACAGCTCTAGACAAAAGTAGACAAGAGTTCTGTCTTCTCCTTGTTACCATGACTCCTTCAACGGTCACCTCTTCGACTATACTTGATTTATTTTCTACTGACAATGAGACTTTTTTAGCATTATGGAGAATAAGGAGTGGAGGATCTTTTCCTGCAAATGTTCATGATATAAATCCTTACCAGTGTAAACCTGAAAATTTACCAGGTACTTTTTCACAAGAATTCATGTTGATAATTTCCCAAGTTTTCCAGCAAATGTTCATGATATGATGATGTTCTTCAAGGCTCAGGCCTCTTGAATTGCCGCGTGTCGAACACTGTATTTTCAGTTTATATCATAAAACAATTTCAATGTTGATTCCTTGCTTCAATTTTCAAAACAGTGTCAAAGTTACGAAATACAAATTTACAGCTGAGACATGCTTGTTTAGTTTCAATGAAGCTTAAGGTACTTTTTATGTCCAGATGGAGTTTGGTATTATGTTGAGGGCAATGTGGATGCTGGCTCAAGTTTCGGTCGCTGGAAGCTGAAAGATGGAGATTGTAAACTGTATTCAAGCTCTTCCTTCACTGGAGGGAGAGCAAGTTATGAATATTATGAAGGTCAAGCACCTTATGAGAGTAAAACAGCCTGGGTTATGCAAAAGTACTGGATGAATCAGATGGACCTGCGTGCCACCTTCGAGCAAAAGGTATGTCCTGCAAAATCTATTTGCCAAAAGGTTCATTGGCTGACATTGCCCTTTTTTCTTTTCCTACCCAACCTATTAGTAGTCAATTGCTTGTTTGGTTGGGCAATATGCAGGAGACCAGCTCACTTTGCAAAGTCTTTCTTGGAGATGAACAGTTTCAAAACAATGAAATGATTCAGAAAACCGAATTTTCTAGTATTCTCAATTCAGAACCAATCCTAAATCATCAGTTGGTTGTTACAGATGGTTCGACTTCGAATAACATGGCGAGTGGATCGACAAGCAAGTCTAAGGTTGTAATCATTATCCCAGCCACCCCCCCCCCCCGATGTCCATGCATTTCTTTCTTAAAGTTTATATGAGACCGGTTTTGGAAACTGATTGCTCCCATCTTCTCTCCATTTCCTTCTCTGCTGGGTTCAGAGTCGCAAATGGTGTCTTTGTTTTCAGTTAATGACAAATGATGTTTTGTAGATGAATGAAGATGACAAGATGGTAGAATTGGCAGATGCAGGAAAACGTTTGGATAATCATTTAGAAGATATCCATCCTGAGATGGATTATTGTTTAGGTGACGACTACTTGGAATTGCTGGATTTAGATAACCCAACATCTTCGTCATCGAGTTCTGAAAATTCTAGTTGCTTGTCCATGTCGTCGAATGAAGATTTTGATACAATGGATGTTCTATGTGATGTAGAACGTGAAATTAACCATGACAGGGGACGAAGAGATGCTGCCTGCATCCATTCCTCTGCACCCTTCAAACTAAAGAAGGAGGTGGTGCATCAAGTGGCTTCAGGTTTGTCCACTTATTTTTTGCATCCTCCTGGTGTTTAACTTTCATTTTGTGCAGAACAGAACATTCTGCTACGTGGTTACTGAATGGAACCATATGGGTTGTGCTATTCTTTCGTATGTTCTCCAAAAAACCAATCACCATAGAGAGAATTATTCTGATTTTATGCCCAAGCTGCTAATATTTCTCTTTATATGTATCCCTGCCCTTCTGTTTGTCAATAATAGTCTCACATTGGTTGATTGGTTGGTTGGTTGGAGAGGAGAATGAAACATCCTTTATAATGGTGTGGAAACCTCTCTCTAGTAGACGGATTTTAAAAACTCTAAGGGGAAGCCTACAGAGACAATATTTGTTAGCAGTGGACTTGAGAAGTTACAAATGGTATCAGAGCCATACATCGGGCAGCGTACTAGCGAGGACGTTGGGCCTCCAAGGGGGTGGATTGTAAGATCCCACGTCAGTTGAATAAAAGAATGAAACATTCCTTATAAGGGTGTGAAAAATCTCTCCCTTGTAGACGCGTTCTAAAAACCTTGAGGTAATGTTTGTACAAAGAGAACAATATCTGCTAGCAGTAGATTTTGGTTGTTACAATCTCTCACCTGCATGCTCGAGTAGAGTTATTTAGACGAAAATGTAAAATTGTCATCATGGTTTCAACCATAGATTCACAGTTACGAAATGCATATTCACTTTAGATCTAAACACACGACTTCTCGTTTTCCCTCTCGAAAATGCAGCAGGAAAATTACATCGCTTACTCATAATAACTATCCTTCTTGTTCACAGATTCTCTTGTCACCATCATAAGAAGCCACACAGCGGCCAAAGAGACTCCCAAAACCGATTCGTCGGCGAACATGAAACTCCCAAGCCAGAGTAAGAAAGAAGGGTACAGAATGAAAGGTGCATCATCAAGTTGTCACAACAAGGTGGTCTCAAATGGTGAAGAAACAGGTGTGGATGGAGGAAAGAAGAGGGTTGGCAGAAGGGAGAAGAGTCCAAAGAAGTACTTTTGCTTCTTTGCTCTTTAGATCTTCCTCAGCATCAGTTAGAGTAAGTAAGTTAGTGATGGGATTAGACCAGATTAACAATGGTTTTGAGCAGACTACTGAAACCTTTCCTTTCAAGTCTGCAACATCATACCTTAAAAATTATCCTGTTTGATTAAGTTCAGTTCAGTTCAGTTCAGTTCGAACTGCGTTTCTAGAGATGATGTTCTGTAATTGTAATTGTAATTCAAATGAGTTGACTTGACTTCATTCATAGCTTGCTGAAGTCAATGTAATTGTAGAGGGCCCCACTCGTCTTTTGAGGAGTAACCAGCCCACCATTGTAACTAGTTCATGTTTCTTGTGTTTCAGTAAATGTTTTCGTTTATCTTTTCTG

mRNA sequence

ATATGTATCCACCCGCTCTCTCTCATGACAAACGAGGAGACTTCAGCGAATCGTCTTTCCAGCTCTCTGATCGACGATCTTCCAGCTCTAGACAAAAGTAGACAAGAGTTCTGTCTTCTCCTTGTTACCATGACTCCTTCAACGGTCACCTCTTCGACTATACTTGATTTATTTTCTACTGACAATGAGACTTTTTTAGCATTATGGAGAATAAGGAGTGGAGGATCTTTTCCTGCAAATGTTCATGATATAAATCCTTACCAGTGTAAACCTGAAAATTTACCAGATGGAGTTTGGTATTATGTTGAGGGCAATGTGGATGCTGGCTCAAGTTTCGGTCGCTGGAAGCTGAAAGATGGAGATTGTAAACTGTATTCAAGCTCTTCCTTCACTGGAGGGAGAGCAAGTTATGAATATTATGAAGGTCAAGCACCTTATGAGAGTAAAACAGCCTGGGTTATGCAAAAGTACTGGATGAATCAGATGGACCTGCGTGCCACCTTCGAGCAAAAGGAGACCAGCTCACTTTGCAAAGTCTTTCTTGGAGATGAACAGTTTCAAAACAATGAAATGATTCAGAAAACCGAATTTTCTAGTATTCTCAATTCAGAACCAATCCTAAATCATCAGTTGGTTGTTACAGATGGTTCGACTTCGAATAACATGGCGAGTGGATCGACAAGCAAGTCTAAGGTTATGAATGAAGATGACAAGATGGTAGAATTGGCAGATGCAGGAAAACGTTTGGATAATCATTTAGAAGATATCCATCCTGAGATGGATTATTGTTTAGGTGACGACTACTTGGAATTGCTGGATTTAGATAACCCAACATCTTCGTCATCGAGTTCTGAAAATTCTAGTTGCTTGTCCATGTCGTCGAATGAAGATTTTGATACAATGGATGTTCTATGTGATGTAGAACGTGAAATTAACCATGACAGGGGACGAAGAGATGCTGCCTGCATCCATTCCTCTGCACCCTTCAAACTAAAGAAGGAGGTGGTGCATCAAGTGGCTTCAGATTCTCTTGTCACCATCATAAGAAGCCACACAGCGGCCAAAGAGACTCCCAAAACCGATTCGTCGGCGAACATGAAACTCCCAAGCCAGAGTAAGAAAGAAGGGTACAGAATGAAAGGTGCATCATCAAGTTGTCACAACAAGGTGGTCTCAAATGGTGAAGAAACAGGTGTGGATGGAGGAAAGAAGAGGGTTGGCAGAAGGGAGAAGAGTCCAAAGAAGTACTTTTGCTTCTTTGCTCTTTAGATCTTCCTCAGCATCAGTTAGAGTAAGTAAGTTAGTGATGGGATTAGACCAGATTAACAATGGTTTTGAGCAGACTACTGAAACCTTTCCTTTCAAGTCTGCAACATCATACCTTAAAAATTATCCTGTTTGATTAAGTTCAGTTCAGTTCAGTTCAGTTCGAACTGCGTTTCTAGAGATGATGTTCTGTAATTGTAATTGTAATTCAAATGAGTTGACTTGACTTCATTCATAGCTTGCTGAAGTCAATGTAATTGTAGAGGGCCCCACTCGTCTTTTGAGGAGTAACCAGCCCACCATTGTAACTAGTTCATGTTTCTTGTGTTTCAGTAAATGTTTTCGTTTATCTTTTCTG

Coding sequence (CDS)

ATGACAAACGAGGAGACTTCAGCGAATCGTCTTTCCAGCTCTCTGATCGACGATCTTCCAGCTCTAGACAAAAGTAGACAAGAGTTCTGTCTTCTCCTTGTTACCATGACTCCTTCAACGGTCACCTCTTCGACTATACTTGATTTATTTTCTACTGACAATGAGACTTTTTTAGCATTATGGAGAATAAGGAGTGGAGGATCTTTTCCTGCAAATGTTCATGATATAAATCCTTACCAGTGTAAACCTGAAAATTTACCAGATGGAGTTTGGTATTATGTTGAGGGCAATGTGGATGCTGGCTCAAGTTTCGGTCGCTGGAAGCTGAAAGATGGAGATTGTAAACTGTATTCAAGCTCTTCCTTCACTGGAGGGAGAGCAAGTTATGAATATTATGAAGGTCAAGCACCTTATGAGAGTAAAACAGCCTGGGTTATGCAAAAGTACTGGATGAATCAGATGGACCTGCGTGCCACCTTCGAGCAAAAGGAGACCAGCTCACTTTGCAAAGTCTTTCTTGGAGATGAACAGTTTCAAAACAATGAAATGATTCAGAAAACCGAATTTTCTAGTATTCTCAATTCAGAACCAATCCTAAATCATCAGTTGGTTGTTACAGATGGTTCGACTTCGAATAACATGGCGAGTGGATCGACAAGCAAGTCTAAGGTTATGAATGAAGATGACAAGATGGTAGAATTGGCAGATGCAGGAAAACGTTTGGATAATCATTTAGAAGATATCCATCCTGAGATGGATTATTGTTTAGGTGACGACTACTTGGAATTGCTGGATTTAGATAACCCAACATCTTCGTCATCGAGTTCTGAAAATTCTAGTTGCTTGTCCATGTCGTCGAATGAAGATTTTGATACAATGGATGTTCTATGTGATGTAGAACGTGAAATTAACCATGACAGGGGACGAAGAGATGCTGCCTGCATCCATTCCTCTGCACCCTTCAAACTAAAGAAGGAGGTGGTGCATCAAGTGGCTTCAGATTCTCTTGTCACCATCATAAGAAGCCACACAGCGGCCAAAGAGACTCCCAAAACCGATTCGTCGGCGAACATGAAACTCCCAAGCCAGAGTAAGAAAGAAGGGTACAGAATGAAAGGTGCATCATCAAGTTGTCACAACAAGGTGGTCTCAAATGGTGAAGAAACAGGTGTGGATGGAGGAAAGAAGAGGGTTGGCAGAAGGGAGAAGAGTCCAAAGAAGTACTTTTGCTTCTTTGCTCTTTAG

Homology

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BLAST of CmoCh05G002320 vs. TrEMBL
Match: A0A0A0LRG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361420 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 9.5e-110
Identity = 223/342 (65.20%), Postives = 265/342 (77.49%), Query Frame = 1


Query: 86  LPDGVWYYVEGNVDAGSSFGRWKLKDGDCKLYSSSSFTGGRASYEYYEGQAPYESKTAWV 145
           LPDGVW+YV  + +A SSF  WKLK G  KL+S SSFTG R +YEYYEGQAPYE KTAW+
Sbjct: 2   LPDGVWFYVVSHGNADSSFSPWKLKSGAWKLFSDSSFTGWRTTYEYYEGQAPYECKTAWI 61

Query: 146 MQKYWMNQMDLRATFEQKETSSLCKVFLGDEQFQNNEMIQKTEFSSILNSEPILNHQLVV 205
           MQKYWM+Q DL    +QKET SLCK+FLGDEQFQN+E   K + S  LNSEP LNHQLVV
Sbjct: 62  MQKYWMSQTDLSENSKQKETISLCKIFLGDEQFQNHENTLKIDLSITLNSEPNLNHQLVV 121

Query: 206 TDGSTSNNMASGSTSKSKVMNEDDKMVELADAGKRLDNHLEDIHPEMDYCLGDDYLELLD 265
           +DGSTSNNMA+GSTSKS+ M+EDDKMVELA +GK +D HLED+HPE D     DYLELLD
Sbjct: 122 SDGSTSNNMANGSTSKSE-MSEDDKMVELAVSGKPVDLHLEDVHPERDAISEGDYLELLD 181

Query: 266 L--DNPTSSSSSSENSSCLSMSSNEDFDTMDVLCDVEREINHDRGRRDAACIHSSAPFKL 325
           L  D P+SSSSSS NSSCL+MSS+EDFD MDVLCD E +INHDR +R AACI SSAPF++
Sbjct: 182 LLNDVPSSSSSSSPNSSCLTMSSDEDFDVMDVLCDAEHDINHDRAQRHAACIRSSAPFRI 241

Query: 326 KKEVVHQVASDSLVTIIR-SHTAAKETPKTDSSAN--------MKLPSQSKKEGYRMKGA 385
           KKEV HQ AS+SLV+I R SH+   E  KTDS+ +        +KLPSQS+K+ Y+++GA
Sbjct: 242 KKEVAHQGASESLVSIKRSSHSPTTENLKTDSTESSSGRLEPELKLPSQSEKKCYKLQGA 301

Query: 386 SSSCHNKVVSNGEETGVDGGKKR----VGRREKSPKKYFCFF 413
           SSS + K+VS+G+ET VDGGKK+    VGR +K  KKY CFF
Sbjct: 302 SSSHNKKMVSSGQETAVDGGKKKKKKAVGRMKKIQKKYLCFF 342

[Close]

BLAST of CmoCh05G002320 vs. TrEMBL
Match: M5XEE4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007090mg PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 9.0e-52
Identity = 147/388 (37.89%), Postives = 210/388 (54.12%), Query Frame = 1


Query: 36  MTPSTVTSSTILDLFSTDNETFLALWRIRSGGSFPANV-HDINPYQCKPENLPDGVWYYV 95
           M P + T    +    TD E  ++L +I SG   P NV  D NPYQ  P NLPDG WY++
Sbjct: 1   MCPQSATLPADIGFQCTDEELCISLGKIISGSPLPGNVIEDANPYQLVPSNLPDGFWYFI 60

Query: 96  EGNVDAGSSFGRWKLKDGDCKLYSSSSFTGGRASYEYYEGQAPYESKTAWVMQKYWMNQM 155
             N +  ++FG W+ K   C+++S+SS TG RA+ E+Y+GQAP ESKT WVMQ+YW+ Q 
Sbjct: 61  HSNENKPTNFGYWRTKGEACRIFSNSSITGWRATLEFYQGQAPNESKTDWVMQEYWLTQK 120

Query: 156 DLRATFEQKETSSLCKVFLGDEQFQNNEMIQKTEFSSILNSEPILNHQLVVTDGSTSNNM 215
            L    + KE  SLC+VF  +EQ  N + +QK   S   +S     H  V       N  
Sbjct: 121 KLSEDSKAKEPRSLCRVFCSNEQKLNCKNLQKMVSS---DSATYSAHSAV---PRAKNCT 180

Query: 216 ASGSTSKSKVMNEDDKMVELADAGKRLDNHLEDIHPEMDYCLGDDYLELLDLDNPTSSSS 275
           +  STSK +V  ++++   +    +R+ +H   I PE+DY    DYLELLDLD P S S 
Sbjct: 181 SHSSTSKPQVSKDNERGTLIVT--ERVPDHDVQIMPEIDYVSRGDYLELLDLDTPASFSF 240

Query: 276 SSENSSCLSMSSNEDFDTMDVLCDVEREINHDRGRRDAACIHS-SAPFKLKKEVVHQVAS 335
           SS+ SSCL+MSS+E FD++ +L ++E + + D   ++A C  S SAP +  + V+   +S
Sbjct: 241 SSD-SSCLTMSSDECFDSLALLEELEPKNSQDLVNKNAGCKFSISAPPRPDELVIFAASS 300

Query: 336 DSLVTIIRSHTAAKETPKTDSSANMKLPSQS-------KKEGYRMKGASSSCHNKVVSNG 395
            S             +P   S+   K+  ++       +K   R +G  S+ HN  VS  
Sbjct: 301 GSFSKSPSEERVKTHSPIPGSAVCGKISGKTSNNMNRIQKPDCRNEGGPSTSHNVDVSPS 360

Query: 396 EETGVDGGKKR---VGRREKSPKKYFCF 412
             T    GK+R   +GR EK  KKYFCF
Sbjct: 361 SHTASQEGKRRARTIGRTEKLKKKYFCF 379

[Close]

BLAST of CmoCh05G002320 vs. TrEMBL
Match: W9S3M1_9ROSA (NAC domain-containing protein 78 OS=Morus notabilis GN=L484_021211 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 7.1e-49
Identity = 144/400 (36.00%), Postives = 213/400 (53.25%), Query Frame = 1


Query: 36  MTPSTVTSSTILDLFSTDNETFLALWRIRSGGSFPANV-HDINPYQCKPENLPDGVWYYV 95
           M P   + ++ +DL+ +D +   +L  I SG   P+NV  D+NPYQ KP  LP G+W+++
Sbjct: 1   MCPPAASPASDIDLYCSDKDIVTSLDGIISGSPLPSNVISDVNPYQYKPSALPVGIWFFI 60

Query: 96  EGNVDAGSSFGRWKLKDGDCKLYSSSSFTGGRASYEYYEGQAPYESKTAWVMQKYWMNQM 155
              +   + FG W+ K   C+++S+SS TG R++ E+YEGQAP+  KT WVMQ+YW+ + 
Sbjct: 61  SSKMRKDADFGYWRTKGEACRIFSNSSITGWRSTLEFYEGQAPHWHKTDWVMQEYWITRK 120

Query: 156 DLRATFEQKETSSLCKVFLGDEQFQNNEMIQK-TEFSSILNSEPILNHQLVVTDGSTSNN 215
            L   F +KE S LC VF   EQ  N E   K  E  +   S P++  +       T N+
Sbjct: 121 ILSKDFNEKENSLLCNVFFVGEQNPNPEKTWKMAEVDTASQSTPVVVQK-------TENH 180

Query: 216 MASGSTSKSKVMNED---------DKMVELADAGKRLDNHLEDIHPEMDYCLGDDYLELL 275
              GSTSK ++   D         D   E+    +R+ ++L DI  E DY  G D+LELL
Sbjct: 181 TGQGSTSKRQINEGDGLPFIAVCEDNDTEIVRTRERVSHNLVDIEHETDYLPGGDFLELL 240

Query: 276 DLDNPTSSSSSSENSSCLSMSSNEDFDTMDVLCDVEREINHDRGRRDAACIHSSAPFKLK 335
           DL+NP S SSSS+ SSCL+MSS+E FD +D+L D+E E +H + + +  C  S     + 
Sbjct: 241 DLENPASPSSSSD-SSCLTMSSDECFDALDLLRDLESEKSHAQMQNNPDCKLSVFASSMP 300

Query: 336 KEVVHQVASDSLV------TIIRSHT----AAKETPKTDSSANMKLPSQSKKEGYRMKGA 395
            E+V   AS   +        +RS+     +A     TD    M  P   +K  +R +GA
Sbjct: 301 TEMVMYPASTGTLDKPPNEEFLRSNRSIPGSASSIKITDKKVLMN-PDGKQKPDFRNEGA 360

Query: 396 SSSCHNKVVS-NGEETGVDGGKKRV-GRREKSPKKYFCFF 413
            S+  + VVS +G+    +  +K   GR +K  KK F  F
Sbjct: 361 PSTSRSGVVSLSGDMAAPEEDRKAARGRMKKLKKKLFNLF 391

[Close]

BLAST of CmoCh05G002320 vs. TrEMBL
Match: A0A0M4FLN5_MANES (NAC transcription factors 12 OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 5.1e-47
Identity = 144/392 (36.73%), Postives = 210/392 (53.57%), Query Frame = 1


Query: 36  MTPSTVTSSTILDLFSTDNETFLALWRIRSGGSFPANV-HDINPYQCKPENLPDGVWYYV 95
           M PS + S   +D    D E F+ L ++  G   P NV  D+NPY   P NLPDG+WY +
Sbjct: 1   MRPS-IASLPEIDFDCADEEIFIFLEKMAGGYPLPGNVITDVNPYNYPPSNLPDGIWYLI 60

Query: 96  EGNVDAGSSFGRWKLKDGDCKLYSSSSFTGGRASYEYYEGQAPYESKTAWVMQKYWMNQM 155
               +    FG WK+K   CKL+S+S  TG R + E++E Q  +E KT WVMQ+YW+ Q 
Sbjct: 61  HSKENGAMEFGCWKVKGEACKLFSNSDITGWRTTLEFFERQVHHECKTDWVMQEYWITQK 120

Query: 156 DLRATFEQKETSSLCKVFLGDEQFQNNEMIQKTEFSSILNSEPILNHQLVVTDGSTSNNM 215
                 + KE SSLC+VFLG EQ  +++  QK   SS+ N+   L H    T     ++ 
Sbjct: 121 GPGENSKLKEASSLCRVFLGGEQGLDHKKQQKV--SSLHNACENLVHSTKATVPKARDDA 180

Query: 216 ASGSTSKSKVMNEDDKMVELADAGKRLDNHLEDIHPEMDYCLGDDYLELLDLDNPTSSSS 275
           ++GSTSK +V + D +   LA AG+    +L    PE+DY    D+LELLDLDNP S SS
Sbjct: 181 SNGSTSKPEV-DGDAETGNLAVAGEP-PFYLVGNPPEIDYISRGDFLELLDLDNPASPSS 240

Query: 276 SSENSSCLSMSSNEDFDTMDVLCDVEREINHDRGRRDAACIHS-SAPFKLKKEVVHQVAS 335
           SS++SSCL+ SS+E FD++ +L +++ EIN    +++ +C  S SA F+  + V+  ++ 
Sbjct: 241 SSDDSSCLTSSSDECFDSLALLQELDSEINWHSAQKNESCKFSVSASFRPNEVVMAPISP 300

Query: 336 DSLVTIIRSHTAAKETPKTDSSANMKLPSQSKKEGYRMKGASSSCHNK-----VVSNGEE 395
            +  +I  S    +E   T+ S    L + S     R+   +   HN        SN  +
Sbjct: 301 GTSFSIEESKPPTEELVGTNPSVLPTLANDSNDLDNRVLQHTVRNHNADNTAGGPSNSSD 360

Query: 396 TGVDG--------GKKRVGR-REKSPKKYFCF 412
            G           GK++V + R K  KKY CF
Sbjct: 361 VGTSSSCQLPSRDGKRKVSKLRTKKHKKYLCF 387

[Close]

BLAST of CmoCh05G002320 vs. TrEMBL
Match: V4T4U1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001389mg PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.5e-46
Identity = 141/389 (36.25%), Postives = 210/389 (53.98%), Query Frame = 1


Query: 36  MTPSTVTSSTILDLFSTDNETFLALWRIRSGGSFPANV-HDINPYQCKPENLPDGVWYYV 95
           M P T ++   +D  STD   F +L R+  G   P NV +D+NPY   P NLPDGVWY V
Sbjct: 1   MCPPTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHMPSNLPDGVWYLV 60

Query: 96  EGNVDAGSSFGRWKLKDGDCKLYSSSSFTGGRASYEYYEGQAPYESKTAWVMQKYWMNQM 155
               +  +  G+W+ K   C+++S+S   G R + E++EGQ P E KT WVMQ++ + Q 
Sbjct: 61  CSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120

Query: 156 DLRATFEQKETSSLCKVFLGDEQFQNNEMIQKTEFSSILNSEPILNHQLVVTDGSTSNNM 215
            L    +++++SSLC+VFL  +Q  N+EM QK  FS+ +N+E   +H   ++     ++ 
Sbjct: 121 RLYGDKKEEDSSSLCRVFLSGKQSPNHEMQQKL-FSANINNETH-SHSTELSFDKDKDDT 180

Query: 216 ASGSTSKSKVMNEDDKMVELADAGKRLDNHLEDIHPEMDYCLGDDYLELLDLDNPTSSSS 275
              S  + +V N+ +         +R  NH ED  PE D    DD+LEL DLD P S SS
Sbjct: 181 RQVSIIRCEVSNDGESRTSAVM--ERPTNHAEDNLPEADNFSEDDFLELHDLDQPLSPSS 240

Query: 276 SSENSSCLSMSSNEDFDTMDVLCDVEREINHDRGRRDAACIHSSAPFKLKKEVVHQVASD 335
           SS+NSS +++SS+E FD + +L ++E   N   G  +A   +S +      EVV  +   
Sbjct: 241 SSDNSSGMTLSSDEYFDHLALLQELEPCKNKGVGPENAEYKYSFSTSHTPNEVV--IFPG 300

Query: 336 SLVTIIRSHTAAKETPKTDSSANM----------KLPSQSKKEGYRMKGASSSCHNKVVS 395
           SL+ +  S     +  KT+S + M          K   Q +K  YR +  SS+ H +  S
Sbjct: 301 SLINVEGSKPETGDIFKTESDSAMVNRTLDSRVLKQAVQGQKANYRGESPSSNSHGQTSS 360

Query: 396 -NGEETGVDGGKKR-VGRREKSPKKYFCF 412
            NG+    +GGKK  VGR +K  +KYFCF
Sbjct: 361 FNGQIALQNGGKKAAVGRMKKLKRKYFCF 383

[Close]

BLAST of CmoCh05G002320 vs. TAIR10
Match: AT1G65910.1 (AT1G65910.1 NAC domain containing protein 28)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-07
Identity = 41/166 (24.70%), Postives = 77/166 (46.39%), Query Frame = 1


Query: 73  VHDINPYQCKPENLP--------DGVWYYVE---------GNVDAGSSFGRWKLKDGDCK 132
           + +I+ Y+C+P +LP        D  W++              +  +  G WK    D K
Sbjct: 38  IPEIDLYKCEPWDLPGKSLLPSKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRK 97

Query: 133 LYSSSSFTGGRASYEYYEGQAPYESKTAWVMQKYWMNQMDLRATFEQKETSSLCKVF--- 192
           + S S   G + +  YY G+AP+ S+T WVM +Y + + +  +    ++  +LC+VF   
Sbjct: 98  VTSHSRMVGTKKTLVYYRGRAPHGSRTDWVMHEYRLEEQECDSKSGIQDAYALCRVFKKS 157

Query: 193 -LGDEQFQNNEMIQKTEFSSILNSEPILNHQLVVTDGSTSNNMASG 218
            L ++  + +   +K + ++  NSE   +   + +DG   N   SG
Sbjct: 158 ALANKIEEQHHGTKKNKGTT--NSEQSTSSTCLYSDGMYENLENSG 201

[Close]

BLAST of CmoCh05G002320 vs. NCBI nr
Match: gi|659087883|ref|XP_008444686.1| (PREDICTED: uncharacterized protein LOC103487948 [Cucumis melo])

HSP 1 Score: 461.5 bits (1186), Expect = 1.6e-126
Identity = 258/393 (65.65%), Postives = 302/393 (76.84%), Query Frame = 1


Query: 36  MTPSTVTSSTI--LDLFSTDNETFLALWRIRSGGSFPANVHDINPYQCKPENLPDGVWYY 95
           MTPS VTS  +  LDLFS+D ETFLAL RI  GG  PANV DINPYQC+PE LPDGVW+Y
Sbjct: 1   MTPSPVTSLAMPMLDLFSSDEETFLALKRILRGGPLPANVLDINPYQCRPEMLPDGVWFY 60

Query: 96  VEGNVDAGSSFGRWKLKDGDCKLYSSSSFTGGRASYEYYEGQAPYESKTAWVMQKYWMNQ 155
            E + +A SSF  WK K G  KLYS SSF+G R +YEYYEGQAP E KTAWVMQ+YWM+Q
Sbjct: 61  AEFHGNADSSFSPWKPKGGAFKLYSDSSFSGWRTTYEYYEGQAPQECKTAWVMQEYWMSQ 120

Query: 156 MDLRATFEQKETSSLCKVFLGDEQFQNNEMIQKTEFSSILNSEP-ILNHQLVVTDGSTSN 215
            DL A  +QKETSSLCK+FLGDEQFQN+E   K E S+ LNSEP  LNHQLVV+DGSTSN
Sbjct: 121 TDLSANSKQKETSSLCKIFLGDEQFQNHEKTLKIELSNTLNSEPNNLNHQLVVSDGSTSN 180

Query: 216 NMASGSTSKSKVMNEDDKMVELADAGKRLDNHLEDIHPEMDYCLGDDYLELLDLDN-PTS 275
           NMA+GSTSKS+ M+EDDKMVELA AGK +D HLE++ PE D     DYLEL DL N P+S
Sbjct: 181 NMANGSTSKSE-MSEDDKMVELAVAGKPVDLHLEEMRPEWDVISEGDYLELQDLLNVPSS 240

Query: 276 SSSSSENSSCLSMSSNEDFDTMDVLCDVEREINHDRGRRDAACIHSSAPFKLKKEVVHQV 335
           SSSSSENSSCL+MSS+EDFD MDVLCD E +INHDR +R AACI SS P ++KKEV HQ 
Sbjct: 241 SSSSSENSSCLTMSSDEDFDVMDVLCDAEHDINHDRAQRHAACIRSSVPSRIKKEVAHQG 300

Query: 336 ASDSLVTIIRSHTAAKETPKTDSSAN--------MKLPSQSKKEGYRMKGASSSCHNKVV 395
           AS+SLV+I RSH+   E  KTDS+A+        +KL SQS+K+ Y+++GASSS +NK+V
Sbjct: 301 ASESLVSIRRSHSPTTENLKTDSTASISGRVEPELKLASQSEKKCYKLQGASSSHNNKMV 360

Query: 396 SNGEETGVDGGKKR----VGRREKSPKKYFCFF 413
           SNG+ET VDGGKK+    VGR +K   KY CFF
Sbjct: 361 SNGQETAVDGGKKKKKKAVGRMKKIQNKYLCFF 392

[Close]

BLAST of CmoCh05G002320 vs. NCBI nr
Match: gi|778671265|ref|XP_011649606.1| (PREDICTED: uncharacterized protein LOC101220327 [Cucumis sativus])

HSP 1 Score: 458.8 bits (1179), Expect = 1.0e-125
Identity = 254/394 (64.47%), Postives = 300/394 (76.14%), Query Frame = 1


Query: 36  MTPSTVTSSTI--LDLFSTDNETFLALWRIRSGGSFPANVHDINPYQCKPENLPDGVWYY 95
           M+PS V S  +  LDLFS+D ETFL L RI  GG  PANV DINPY C P+ LPDGVW+Y
Sbjct: 1   MSPSPVPSLAMHMLDLFSSDEETFLELKRISRGGPLPANVLDINPYGCNPKMLPDGVWFY 60

Query: 96  VEGNVDAGSSFGRWKLKDGDCKLYSSSSFTGGRASYEYYEGQAPYESKTAWVMQKYWMNQ 155
           V  + +A SSF  WKLK G  KL+S SSFTG R +YEYYEGQAPYE KTAW+MQKYWM+Q
Sbjct: 61  VVSHGNADSSFSPWKLKSGAWKLFSDSSFTGWRTTYEYYEGQAPYECKTAWIMQKYWMSQ 120

Query: 156 MDLRATFEQKETSSLCKVFLGDEQFQNNEMIQKTEFSSILNSEPILNHQLVVTDGSTSNN 215
            DL    +QKET SLCK+FLGDEQFQN+E   K + S  LNSEP LNHQLVV+DGSTSNN
Sbjct: 121 TDLSENSKQKETISLCKIFLGDEQFQNHENTLKIDLSITLNSEPNLNHQLVVSDGSTSNN 180

Query: 216 MASGSTSKSKVMNEDDKMVELADAGKRLDNHLEDIHPEMDYCLGDDYLELLDL--DNPTS 275
           MA+GSTSKS+ M+EDDKMVELA +GK +D HLED+HPE D     DYLELLDL  D P+S
Sbjct: 181 MANGSTSKSE-MSEDDKMVELAVSGKPVDLHLEDVHPERDAISEGDYLELLDLLNDVPSS 240

Query: 276 SSSSSENSSCLSMSSNEDFDTMDVLCDVEREINHDRGRRDAACIHSSAPFKLKKEVVHQV 335
           SSSSS NSSCL+MSS+EDFD MDVLCD E +INHDR +R AACI SSAPF++KKEV HQ 
Sbjct: 241 SSSSSPNSSCLTMSSDEDFDVMDVLCDAEHDINHDRAQRHAACIRSSAPFRIKKEVAHQG 300

Query: 336 ASDSLVTIIR-SHTAAKETPKTDSSAN--------MKLPSQSKKEGYRMKGASSSCHNKV 395
           AS+SLV+I R SH+   E  KTDS+ +        +KLPSQS+K+ Y+++GASSS + K+
Sbjct: 301 ASESLVSIKRSSHSPTTENLKTDSTESSSGRLEPELKLPSQSEKKCYKLQGASSSHNKKM 360

Query: 396 VSNGEETGVDGGKKR----VGRREKSPKKYFCFF 413
           VS+G+ET VDGGKK+    VGR +K  KKY CFF
Sbjct: 361 VSSGQETAVDGGKKKKKKAVGRMKKIQKKYLCFF 393

[Close]

BLAST of CmoCh05G002320 vs. NCBI nr
Match: gi|700207457|gb|KGN62576.1| (hypothetical protein Csa_2G361420 [Cucumis sativus])

HSP 1 Score: 405.2 bits (1040), Expect = 1.4e-109
Identity = 223/342 (65.20%), Postives = 265/342 (77.49%), Query Frame = 1


Query: 86  LPDGVWYYVEGNVDAGSSFGRWKLKDGDCKLYSSSSFTGGRASYEYYEGQAPYESKTAWV 145
           LPDGVW+YV  + +A SSF  WKLK G  KL+S SSFTG R +YEYYEGQAPYE KTAW+
Sbjct: 2   LPDGVWFYVVSHGNADSSFSPWKLKSGAWKLFSDSSFTGWRTTYEYYEGQAPYECKTAWI 61

Query: 146 MQKYWMNQMDLRATFEQKETSSLCKVFLGDEQFQNNEMIQKTEFSSILNSEPILNHQLVV 205
           MQKYWM+Q DL    +QKET SLCK+FLGDEQFQN+E   K + S  LNSEP LNHQLVV
Sbjct: 62  MQKYWMSQTDLSENSKQKETISLCKIFLGDEQFQNHENTLKIDLSITLNSEPNLNHQLVV 121

Query: 206 TDGSTSNNMASGSTSKSKVMNEDDKMVELADAGKRLDNHLEDIHPEMDYCLGDDYLELLD 265
           +DGSTSNNMA+GSTSKS+ M+EDDKMVELA +GK +D HLED+HPE D     DYLELLD
Sbjct: 122 SDGSTSNNMANGSTSKSE-MSEDDKMVELAVSGKPVDLHLEDVHPERDAISEGDYLELLD 181

Query: 266 L--DNPTSSSSSSENSSCLSMSSNEDFDTMDVLCDVEREINHDRGRRDAACIHSSAPFKL 325
           L  D P+SSSSSS NSSCL+MSS+EDFD MDVLCD E +INHDR +R AACI SSAPF++
Sbjct: 182 LLNDVPSSSSSSSPNSSCLTMSSDEDFDVMDVLCDAEHDINHDRAQRHAACIRSSAPFRI 241

Query: 326 KKEVVHQVASDSLVTIIR-SHTAAKETPKTDSSAN--------MKLPSQSKKEGYRMKGA 385
           KKEV HQ AS+SLV+I R SH+   E  KTDS+ +        +KLPSQS+K+ Y+++GA
Sbjct: 242 KKEVAHQGASESLVSIKRSSHSPTTENLKTDSTESSSGRLEPELKLPSQSEKKCYKLQGA 301

Query: 386 SSSCHNKVVSNGEETGVDGGKKR----VGRREKSPKKYFCFF 413
           SSS + K+VS+G+ET VDGGKK+    VGR +K  KKY CFF
Sbjct: 302 SSSHNKKMVSSGQETAVDGGKKKKKKAVGRMKKIQKKYLCFF 342

[Close]

BLAST of CmoCh05G002320 vs. NCBI nr
Match: gi|596170626|ref|XP_007223100.1| (hypothetical protein PRUPE_ppa007090mg [Prunus persica])

HSP 1 Score: 212.6 bits (540), Expect = 1.3e-51
Identity = 147/388 (37.89%), Postives = 210/388 (54.12%), Query Frame = 1


Query: 36  MTPSTVTSSTILDLFSTDNETFLALWRIRSGGSFPANV-HDINPYQCKPENLPDGVWYYV 95
           M P + T    +    TD E  ++L +I SG   P NV  D NPYQ  P NLPDG WY++
Sbjct: 1   MCPQSATLPADIGFQCTDEELCISLGKIISGSPLPGNVIEDANPYQLVPSNLPDGFWYFI 60

Query: 96  EGNVDAGSSFGRWKLKDGDCKLYSSSSFTGGRASYEYYEGQAPYESKTAWVMQKYWMNQM 155
             N +  ++FG W+ K   C+++S+SS TG RA+ E+Y+GQAP ESKT WVMQ+YW+ Q 
Sbjct: 61  HSNENKPTNFGYWRTKGEACRIFSNSSITGWRATLEFYQGQAPNESKTDWVMQEYWLTQK 120

Query: 156 DLRATFEQKETSSLCKVFLGDEQFQNNEMIQKTEFSSILNSEPILNHQLVVTDGSTSNNM 215
            L    + KE  SLC+VF  +EQ  N + +QK   S   +S     H  V       N  
Sbjct: 121 KLSEDSKAKEPRSLCRVFCSNEQKLNCKNLQKMVSS---DSATYSAHSAV---PRAKNCT 180

Query: 216 ASGSTSKSKVMNEDDKMVELADAGKRLDNHLEDIHPEMDYCLGDDYLELLDLDNPTSSSS 275
           +  STSK +V  ++++   +    +R+ +H   I PE+DY    DYLELLDLD P S S 
Sbjct: 181 SHSSTSKPQVSKDNERGTLIVT--ERVPDHDVQIMPEIDYVSRGDYLELLDLDTPASFSF 240

Query: 276 SSENSSCLSMSSNEDFDTMDVLCDVEREINHDRGRRDAACIHS-SAPFKLKKEVVHQVAS 335
           SS+ SSCL+MSS+E FD++ +L ++E + + D   ++A C  S SAP +  + V+   +S
Sbjct: 241 SSD-SSCLTMSSDECFDSLALLEELEPKNSQDLVNKNAGCKFSISAPPRPDELVIFAASS 300

Query: 336 DSLVTIIRSHTAAKETPKTDSSANMKLPSQS-------KKEGYRMKGASSSCHNKVVSNG 395
            S             +P   S+   K+  ++       +K   R +G  S+ HN  VS  
Sbjct: 301 GSFSKSPSEERVKTHSPIPGSAVCGKISGKTSNNMNRIQKPDCRNEGGPSTSHNVDVSPS 360

Query: 396 EETGVDGGKKR---VGRREKSPKKYFCF 412
             T    GK+R   +GR EK  KKYFCF
Sbjct: 361 SHTASQEGKRRARTIGRTEKLKKKYFCF 379

[Close]

BLAST of CmoCh05G002320 vs. NCBI nr
Match: gi|645227936|ref|XP_008220756.1| (PREDICTED: protein SOMBRERO-like [Prunus mume])

HSP 1 Score: 210.7 bits (535), Expect = 4.9e-51
Identity = 146/388 (37.63%), Postives = 209/388 (53.87%), Query Frame = 1


Query: 36  MTPSTVTSSTILDLFSTDNETFLALWRIRSGGSFPANV-HDINPYQCKPENLPDGVWYYV 95
           M P +      +    TD E  ++L +I SG   P NV  D NPYQ  P NLPDG WY++
Sbjct: 1   MRPQSAALPADIGFQCTDEELCISLGKIISGSPLPGNVIEDANPYQLVPSNLPDGFWYFI 60

Query: 96  EGNVDAGSSFGRWKLKDGDCKLYSSSSFTGGRASYEYYEGQAPYESKTAWVMQKYWMNQM 155
             N +  ++FG W+ K   C+++S+SS TG RA+ E+Y+G AP+ESKT WVMQ+YW+ Q 
Sbjct: 61  HSNENKPTNFGYWRTKGEACRIFSNSSITGWRATLEFYQGHAPHESKTNWVMQEYWLTQK 120

Query: 156 DLRATFEQKETSSLCKVFLGDEQFQNNEMIQKTEFSSILNSEPILNHQLVVTDGSTSNNM 215
            L    + KE  SLC+VF  +EQ  N + +QK   S   +S     H  V       N  
Sbjct: 121 KLSEDSKAKEPRSLCRVFCSNEQKSNCKNLQKMVSS---DSASYSTHSAV---PRAKNCT 180

Query: 216 ASGSTSKSKVMNEDDKMVELADAGKRLDNHLEDIHPEMDYCLGDDYLELLDLDNPTSSSS 275
           +  STSK +V+ ++++   +    +R  +H   I PE+DY    DYLELLDLD P S S 
Sbjct: 181 SHSSTSKPQVIKDNERGTLIGT--ERGPDHNVQIMPEIDYVSRGDYLELLDLDTPASFSF 240

Query: 276 SSENSSCLSMSSNEDFDTMDVLCDVEREINHDRGRRDAACIHS-SAPFKLKKEVVHQVAS 335
           SS+ SSCL+MSS+E FD++ +L ++E + + D   ++A C  S SAP +  + V+   +S
Sbjct: 241 SSD-SSCLTMSSDECFDSLALLEELEPKNSQDLVNKNAGCKFSISAPPRSDELVMFAASS 300

Query: 336 DSLVTIIRSHTAAKETPKTDSSANMKLP-------SQSKKEGYRMKGASSSCHNKVVSNG 395
            S             +P   S+   K+        S+ +K   R +G  S+ HN  VS  
Sbjct: 301 GSFSKSPSEERVKTHSPIPGSAVCGKISGKTSNNMSRIQKPDNRNEGGPSTSHNIDVSPS 360

Query: 396 EETGVDGGKKR---VGRREKSPKKYFCF 412
             T    GK+R   +GR EK  KKYFCF
Sbjct: 361 SNTASQEGKRRARTIGRTEKLKKKYFCF 379

The following BLAST results are available for this feature:

BLAST of CmoCh05G002320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G002320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRG0_CUCSA	9.5e-110	65.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G361420 PE=4 SV=1	[more]
M5XEE4_PRUPE	9.0e-52	37.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007090mg PE=4 SV=1	[more]
W9S3M1_9ROSA	7.1e-49	36.00	NAC domain-containing protein 78 OS=Morus notabilis GN=L484_021211 PE=4 SV=1	[more]
A0A0M4FLN5_MANES	5.1e-47	36.73	NAC transcription factors 12 OS=Manihot esculenta PE=2 SV=1	[more]
V4T4U1_9ROSI	2.5e-46	36.25	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001389mg PE=4 SV=1	[more]

BLAST of CmoCh05G002320 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65910.1	1.6e-07	24.70	NAC domain containing protein 28	[more]

BLAST of CmoCh05G002320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659087883\|ref\|XP_008444686.1\|	1.6e-126	65.65	PREDICTED: uncharacterized protein LOC103487948 [Cucumis melo]	[more]
gi\|778671265\|ref\|XP_011649606.1\|	1.0e-125	64.47	PREDICTED: uncharacterized protein LOC101220327 [Cucumis sativus]	[more]
gi\|700207457\|gb\|KGN62576.1\|	1.4e-109	65.20	hypothetical protein Csa_2G361420 [Cucumis sativus]	[more]
gi\|596170626\|ref\|XP_007223100.1\|	1.3e-51	37.89	hypothetical protein PRUPE_ppa007090mg [Prunus persica]	[more]
gi\|645227936\|ref\|XP_008220756.1\|	4.9e-51	37.63	PREDICTED: protein SOMBRERO-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003441	NAC-dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G002320.1	CmoCh05G002320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PROFILE	PS51005	NAC	coord: 43..174 score: 15
IPR003441	NAC domain	unknown	SSF101941	NAC domain	coord: 60..173 score: 8.63
None	No IPR available	PANTHER	PTHR31989	FAMILY NOT NAMED	coord: 26..339 score: 7.0
None	No IPR available	PANTHER	PTHR31989:SF12	SUBFAMILY NOT NAMED	coord: 26..339 score: 7.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G002320	Cucsa.232360	Cucumber (Gy14) v1	cgycmoB0643
CmoCh05G002320	CmaCh12G004910	Cucurbita maxima (Rimu)	cmacmoB199
CmoCh05G002320	CmaCh05G002250	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G002320	Cla022514	Watermelon (97103) v1	cmowmB748
CmoCh05G002320	Csa2G361420	Cucumber (Chinese Long) v2	cmocuB777
CmoCh05G002320	MELO3C010923	Melon (DHL92) v3.5.1	cmomeB718
CmoCh05G002320	ClCG08G015320	Watermelon (Charleston Gray)	cmowcgB716
CmoCh05G002320	CSPI02G19790	Wild cucumber (PI 183967)	cmocpiB782
CmoCh05G002320	Lsi08G014160	Bottle gourd (USVL1VR-Ls)	cmolsiB731
CmoCh05G002320	Cp4.1LG11g01900	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G002320	Cp4.1LG07g04310	Cucurbita pepo (Zucchini)	cmocpeB750
CmoCh05G002320	MELO3C010923.2	Melon (DHL92) v3.6.1	cmomedB815
CmoCh05G002320	CsaV3_2G028480	Cucumber (Chinese Long) v3	cmocucB0918
CmoCh05G002320	Cla97C08G158900	Watermelon (97103) v2	cmowmbB802
CmoCh05G002320	Bhi04G000246	Wax gourd	cmowgoB0944
CmoCh05G002320	CsGy2G019590	Cucumber (Gy14) v2	cgybcmoB238
CmoCh05G002320	Carg04070	Silver-seed gourd	carcmoB1319
CmoCh05G002320	Carg11816	Silver-seed gourd	carcmoB0263

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh05G002320	CmoCh12G004380	Cucurbita moschata (Rifu)	cmocmoB156

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G002320	Cucumber (Gy14) v2	cgybcmoB397
CmoCh05G002320	Silver-seed gourd	carcmoB0147
CmoCh05G002320	Silver-seed gourd	carcmoB1265
CmoCh05G002320	Cucumber (Chinese Long) v3	cmocucB0928
CmoCh05G002320	Watermelon (97103) v2	cmowmbB792
CmoCh05G002320	Cucurbita maxima (Rimu)	cmacmoB483
CmoCh05G002320	Cucurbita moschata (Rifu)	cmocmoB033
CmoCh05G002320	Cucurbita moschata (Rifu)	cmocmoB369
CmoCh05G002320	Cucumber (Gy14) v1	cgycmoB0940
CmoCh05G002320	Cucurbita maxima (Rimu)	cmacmoB064
CmoCh05G002320	Wild cucumber (PI 183967)	cmocpiB791
CmoCh05G002320	Cucumber (Chinese Long) v2	cmocuB788
CmoCh05G002320	Watermelon (Charleston Gray)	cmowcgB706
CmoCh05G002320	Watermelon (97103) v1	cmowmB753
CmoCh05G002320	Cucurbita pepo (Zucchini)	cmocpeB734
CmoCh05G002320	Cucurbita pepo (Zucchini)	cmocpeB740
CmoCh05G002320	Bottle gourd (USVL1VR-Ls)	cmolsiB717