CmoCh05G002200 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G002200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Myb family transcription factor
Location	Cmo_Chr05 : 937944 .. 939332 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTGGGGATTTCTCCTTCTGTGGGTTTGCTTATAAATCCATCATCGTCACACCTCCCTTCCTCTAAAGCTCCCATTTTTCGAAACCCCTTTCTCTATCTCCTTCTCTCAAATCATAATCCACTCATAATATCAAAAGGGTCACCACCTTTTTCCTCAATCTCTTCTCCAAACCATTCATGTTTACCTCCACCCATATGATCACCAACACCACGGCACCGCCCTTGCCGGACCTTTCCTTGCAGATAAGCCCACCCTCTGATTCCGGCAGCAGCGGCAGCGATCTGACCCATGAGAATGCTGCGTTTCTTCTTCCTCCCAAAACCCATTTCAAGGGAGATGCCAAAATGGGCTTTGGGATTAAAAGAAGAATTAGAGCTCCAAGAATGAGATGGACCACCACTCTTCATGCCCATTTCGTCCACGCTGTTCAGCTCCTTGGCGGCCATGACAGTACATATTTTATTTTATTTTTATTTTTATTTTTATTTTATTGTTGCTTTTTCTAACTCATTTATATGATTTTTTTTATTTATTTTTTCTTCCTTCAATCAATCTGCAGGGGCAACACCAAAATCTGTACTGGAGCTGATGAATGTCAAAGATTTAACCCTAGCTCATGTAAAAAGCCATTTACAGGTCGGTTTTTTTTTTTTTTTTTGGAATAAGAATTGAATTGTAATGGTTCTTGAGAACAAAAAAGTGAGGACAAAAGAGAATCAAGAGTGTAATCTTTGCCCAGTTGACTATTTTTTTTTTCTTTCTTTCTGCTGTTTCTTTTAATTTCTTTTTTTTTTTTTTTTGGAATAAGAATTGAATTGTAATGGTTCTTGAGAACAAAAAAGTGAGGACAAAAGAGAATCAAGAGTGTAATCTTTGCCCAGTTGACTATTTTTTTTTTCTTTCTTTCTGCTGTTTCTTTTAATTTCTTTTTTTTTTTTTTTTGGAATAAGAATTGAATTGTAATGGTTCTTGAGAACAAAAAAGTGAGGACAAAAGAGAATCAAGAGTGTAATCTTTGCCCAGTTGACTATTTTTTTTTTCTTTCTTTCTGCTGTTTCTTTTAATTTCTTTTTTTTTTTTTTTTGGAATAAGAATTGAATTGTAATGGTTCTTGAGAACAAAAAAGTGAGGACAAAAGAGAATCAAGAGTGTAATCTTTGCCCAGTTGACTATTTTTTTTTTCTTTCTTTCTGCTGTTTCTTTTAATTTCTTTTTTTTTTTTTTTTGGAATAAGAATTGAATTGTAATGGTTCTTGAGAACAAAAAAGTGAGGACAAAAGAGAATCAAGAGTGTAATCTTTGCCCAGTTGACTATTTTTTTTTTCTTTCTTTCTGCTGTTTCTTTTAATTTCTTTTTTTTTTTTTTTTGGAATAAGAATTGA

mRNA sequence

TCTCTCTCTGGGGATTTCTCCTTCTGTGGGTTTGCTTATAAATCCATCATCGTCACACCTCCCTTCCTCTAAAGCTCCCATTTTTCGAAACCCCTTTCTCTATCTCCTTCTCTCAAATCATAATCCACTCATAATATCAAAAGGGTCACCACCTTTTTCCTCAATCTCTTCTCCAAACCATTCATGTTTACCTCCACCCATATGATCACCAACACCACGGCACCGCCCTTGCCGGACCTTTCCTTGCAGATAAGCCCACCCTCTGATTCCGGCAGCAGCGGCAGCGATCTGACCCATGAGAATGCTGCGTTTCTTCTTCCTCCCAAAACCCATTTCAAGGGAGATGCCAAAATGGGCTTTGGGATTAAAAGAAGAATTAGAGCTCCAAGAATGAGATGGACCACCACTCTTCATGCCCATTTCGTCCACGCTGTTCAGCTCCTTGGCGGCCATGACAGGGCAACACCAAAATCTGTACTGGAGCTGATGAATGTCAAAGATTTAACCCTAGCTCATGTAAAAAGCCATTTACAGAATTGA

Coding sequence (CDS)

ATGTTTACCTCCACCCATATGATCACCAACACCACGGCACCGCCCTTGCCGGACCTTTCCTTGCAGATAAGCCCACCCTCTGATTCCGGCAGCAGCGGCAGCGATCTGACCCATGAGAATGCTGCGTTTCTTCTTCCTCCCAAAACCCATTTCAAGGGAGATGCCAAAATGGGCTTTGGGATTAAAAGAAGAATTAGAGCTCCAAGAATGAGATGGACCACCACTCTTCATGCCCATTTCGTCCACGCTGTTCAGCTCCTTGGCGGCCATGACAGGGCAACACCAAAATCTGTACTGGAGCTGATGAATGTCAAAGATTTAACCCTAGCTCATGTAAAAAGCCATTTACAGAATTGA

Homology

[Close]

BLAST of CmoCh05G002200 vs. Swiss-Prot
Match: KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-30
Identity = 80/140 (57.14%), Postives = 88/140 (62.86%), Query Frame = 1


Query: 16  LPDLSLQISPP-----------------SDSGSSGSDLTHENAAFLLP------------ 75
           +PDLSLQIS P                 SDSGSS SDL+HEN  F  P            
Sbjct: 16  VPDLSLQISLPNYHAGKPLHGGDRSSTSSDSGSSLSDLSHENNFFNKPLLSLGFDHHHQR 75

Query: 76  ------PKTH---FKGDAKMGFGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKS 118
                 P+ +   FK  +    G+KR IRAPRMRWT+TLHAHFVHAVQLLGGH+RATPKS
Sbjct: 76  RSNMFQPQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKS 135

[Close]

BLAST of CmoCh05G002200 vs. Swiss-Prot
Match: KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.5e-24
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 59  FGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQ 118
           F  KR +RAPRMRWTTTLHAHFVHAVQLLGGH+RATPKSVLELM+V+DLTLAHVKSHLQ
Sbjct: 156 FTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQ 214

[Close]

BLAST of CmoCh05G002200 vs. Swiss-Prot
Match: KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-23
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 1


Query: 59  FGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQ 118
           F  KR +RAPRMRWTTTLHA FVHAV+LLGGH+RATPKSVLELM+VKDLTLAHVKSHLQ
Sbjct: 205 FPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 263

[Close]

BLAST of CmoCh05G002200 vs. Swiss-Prot
Match: ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-22
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 1


Query: 62  KRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQ 118
           KR +RAPRMRWT+TLHA FVHAV+LLGGH+RATPKSVLELM+VKDLTLAHVKSHLQ
Sbjct: 319 KRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 374

[Close]

BLAST of CmoCh05G002200 vs. Swiss-Prot
Match: KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-21
Identity = 48/56 (85.71%), Postives = 54/56 (96.43%), Query Frame = 1


Query: 62  KRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQ 118
           KR +RAPRMRWT++LHA FVHAV+LLGGH+RATPKSVLELM+VKDLTLAHVKSHLQ
Sbjct: 214 KRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 269

[Close]

BLAST of CmoCh05G002200 vs. TrEMBL
Match: A0A0A0LP74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360740 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 9.2e-34
Identity = 81/117 (69.23%), Postives = 90/117 (76.92%), Query Frame = 1


Query: 2   FTSTHMITNTTAPPLPDLSLQISPPSDSGSSGSDLTHENAAFLLPPKTHFKGDAKMGFG- 61
           +++ +  T T  PPLPDLSL ISPPS SG+   +  H +    +    HFK   KMGFG 
Sbjct: 3   YSNNNNNTTTPPPPLPDLSLHISPPSGSGNHYFNHHHHHHQPQIF-SNHFKRGPKMGFGS 62

Query: 62  IKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQ 118
           IKR IRAPRMRWTTTLHAHFVHAVQLLGGH+RATPKSVLELMNVKDLTLAHVKSHLQ
Sbjct: 63  IKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 118

[Close]

BLAST of CmoCh05G002200 vs. TrEMBL
Match: U5FNQ7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s03650g PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.2e-30
Identity = 87/183 (47.54%), Postives = 97/183 (53.01%), Query Frame = 1


Query: 1   MFTSTHMITNTTAPPLPDLSLQISPPS-------------------------DSGSSGSD 60
           MF+S+  I   +  P PDLSLQISPPS                         DSGSSGSD
Sbjct: 1   MFSSSKHIIMRSVSPFPDLSLQISPPSVEAKETGYDGGLTRKALCSDRSSTTDSGSSGSD 60

Query: 61  LTHENA-----------------------------AFLLPPKTH------------FKGD 118
           L+HEN                                 LP   +            FK  
Sbjct: 61  LSHENGFLNQERSYNLGPSEPTLSLGFDMADLSSQTLQLPRNLNHHHHQPQIYGRDFKRS 120

[Close]

BLAST of CmoCh05G002200 vs. TrEMBL
Match: A0A0B0NJ58_GOSAR (Putative transcription factor KAN4-like protein OS=Gossypium arboreum GN=F383_11150 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.2e-30
Identity = 92/184 (50.00%), Postives = 98/184 (53.26%), Query Frame = 1


Query: 1   MFTSTHMITNTTAPPLPDLSLQISPPS---------------------------DSGSSG 60
           MF S++ I  T   P PDLSLQISPPS                           DSGSSG
Sbjct: 1   MFLSSNTIMRTA--PFPDLSLQISPPSVSDCKAKEMAYDVLSGKSIYSDRSSTTDSGSSG 60

Query: 61  SDLTHENA-----------------AFLLPPKTH----------------------FKGD 118
           SDL+HEN                  A L PP                         FK  
Sbjct: 61  SDLSHENGYSNPGLGEPTLSLGFEMADLGPPHLQQPRNPHHLHQQHHYQPQIYGRDFKRS 120

[Close]

BLAST of CmoCh05G002200 vs. TrEMBL
Match: A0A151R6J5_CAJCA (Putative Myb family transcription factor At1g14600 family OS=Cajanus cajan GN=KK1_040499 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-29
Identity = 88/181 (48.62%), Postives = 98/181 (54.14%), Query Frame = 1


Query: 1   MFTSTHMITNTTAPPL--PDLSLQISPPS------------------------DSGSSGS 60
           MFT++H +  T   PL  PDLSL ISPPS                        DS SSGS
Sbjct: 1   MFTNSHTVMQTLLSPLSEPDLSLNISPPSISDSEAKEVGSFGKVLYNDMCSTSDSASSGS 60

Query: 61  DLTHE-----------NAAF------------------------LLPPKTH---FKGDAK 118
           DL+HE              F                        LL P  +   FK  A+
Sbjct: 61  DLSHEFHNLGHREPTLKLGFGTVDLNQRRHQQVQGVVPRSFNHHLLQPHIYGREFKRSAR 120

[Close]

BLAST of CmoCh05G002200 vs. TrEMBL
Match: A0A0B0PKZ0_GOSAR (Putative transcription factor KAN4-like protein OS=Gossypium arboreum GN=F383_06768 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.2e-29
Identity = 86/154 (55.84%), Postives = 92/154 (59.74%), Query Frame = 1


Query: 11  TTAPPLPDLSLQISPPS----------------------DSGSSGSDLTHENAAFLLP-- 70
           TTA  LPDLSLQISPPS                      DSGSSGSDL+ EN  F  P  
Sbjct: 4   TTA--LPDLSLQISPPSVKEMADDGLSMKSIYSDRSSTTDSGSSGSDLSQENGYFNNPIE 63

Query: 71  -------------------PKTH---FKGDAKMGF-GIKRRIRAPRMRWTTTLHAHFVHA 118
                              P+ +   FK  ++    G KR IRAPRMRWTTTLHAHFVHA
Sbjct: 64  PTLSLGFEMVHHHHHHQYQPQIYGRDFKRSSRTNINGAKRSIRAPRMRWTTTLHAHFVHA 123

[Close]

BLAST of CmoCh05G002200 vs. TAIR10
Match: AT5G42630.1 (AT5G42630.1 Homeodomain-like superfamily protein)

HSP 1 Score: 134.0 bits (336), Expect = 5.9e-32
Identity = 80/140 (57.14%), Postives = 88/140 (62.86%), Query Frame = 1


Query: 16  LPDLSLQISPP-----------------SDSGSSGSDLTHENAAFLLP------------ 75
           +PDLSLQIS P                 SDSGSS SDL+HEN  F  P            
Sbjct: 16  VPDLSLQISLPNYHAGKPLHGGDRSSTSSDSGSSLSDLSHENNFFNKPLLSLGFDHHHQR 75

Query: 76  ------PKTH---FKGDAKMGFGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKS 118
                 P+ +   FK  +    G+KR IRAPRMRWT+TLHAHFVHAVQLLGGH+RATPKS
Sbjct: 76  RSNMFQPQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKS 135

[Close]

BLAST of CmoCh05G002200 vs. TAIR10
Match: AT4G17695.1 (AT4G17695.1 Homeodomain-like superfamily protein)

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-25
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 59  FGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQ 118
           F  KR +RAPRMRWTTTLHAHFVHAVQLLGGH+RATPKSVLELM+V+DLTLAHVKSHLQ
Sbjct: 156 FTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQ 214

[Close]

BLAST of CmoCh05G002200 vs. TAIR10
Match: AT1G32240.1 (AT1G32240.1 Homeodomain-like superfamily protein)

HSP 1 Score: 108.6 bits (270), Expect = 2.6e-24
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 1


Query: 59  FGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQ 118
           F  KR +RAPRMRWTTTLHA FVHAV+LLGGH+RATPKSVLELM+VKDLTLAHVKSHLQ
Sbjct: 205 FPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 263

[Close]

BLAST of CmoCh05G002200 vs. TAIR10
Match: AT5G16560.1 (AT5G16560.1 Homeodomain-like superfamily protein)

HSP 1 Score: 104.0 bits (258), Expect = 6.5e-23
Identity = 48/56 (85.71%), Postives = 54/56 (96.43%), Query Frame = 1


Query: 62  KRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQ 118
           KR +RAPRMRWT++LHA FVHAV+LLGGH+RATPKSVLELM+VKDLTLAHVKSHLQ
Sbjct: 214 KRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 269

[Close]

BLAST of CmoCh05G002200 vs. TAIR10
Match: AT2G42660.1 (AT2G42660.1 Homeodomain-like superfamily protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.9e-15
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 64  RIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQ 118
           R   PR+RWT  LH  FV AVQ LGG DRATPK VLE+MN+K L++AHVKSHLQ
Sbjct: 47  RSNMPRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQ 100

[Close]

BLAST of CmoCh05G002200 vs. NCBI nr
Match: gi|659087839|ref|XP_008444662.1| (PREDICTED: probable transcription factor KAN4 isoform X2 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 7.0e-35
Identity = 85/122 (69.67%), Postives = 92/122 (75.41%), Query Frame = 1


Query: 1   MFTSTHMITNTTA----PPLPDLSLQISPPSDSGSSGSDLTHENAAFLLPPKTHFKGDAK 60
           MF +    +NTT     PPLPDLSL ISPPSDSG+   +  H +   +     HFK   K
Sbjct: 1   MFINNMDYSNTTTATPPPPLPDLSLHISPPSDSGNHYFNHHHHHQPQIY--SNHFKRGPK 60

Query: 61  MGFG-IKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSH 118
           MGFG IKR IRAPRMRWTTTLHAHFVHAVQLLGGH+RATPKSVLELMNVKDLTLAHVKSH
Sbjct: 61  MGFGSIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSH 120

[Close]

BLAST of CmoCh05G002200 vs. NCBI nr
Match: gi|659087837|ref|XP_008444661.1| (PREDICTED: probable transcription factor KAN4 isoform X1 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 7.0e-35
Identity = 85/122 (69.67%), Postives = 92/122 (75.41%), Query Frame = 1


Query: 1   MFTSTHMITNTTA----PPLPDLSLQISPPSDSGSSGSDLTHENAAFLLPPKTHFKGDAK 60
           MF +    +NTT     PPLPDLSL ISPPSDSG+   +  H +   +     HFK   K
Sbjct: 1   MFINNMDYSNTTTATPPPPLPDLSLHISPPSDSGNHYFNHHHHHQPQIY--SNHFKRGPK 60

Query: 61  MGFG-IKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSH 118
           MGFG IKR IRAPRMRWTTTLHAHFVHAVQLLGGH+RATPKSVLELMNVKDLTLAHVKSH
Sbjct: 61  MGFGSIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSH 120

[Close]

BLAST of CmoCh05G002200 vs. NCBI nr
Match: gi|778671212|ref|XP_004152789.2| (PREDICTED: probable transcription factor KAN4 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-33
Identity = 81/117 (69.23%), Postives = 90/117 (76.92%), Query Frame = 1


Query: 2   FTSTHMITNTTAPPLPDLSLQISPPSDSGSSGSDLTHENAAFLLPPKTHFKGDAKMGFG- 61
           +++ +  T T  PPLPDLSL ISPPS SG+   +  H +    +    HFK   KMGFG 
Sbjct: 8   YSNNNNNTTTPPPPLPDLSLHISPPSGSGNHYFNHHHHHHQPQIF-SNHFKRGPKMGFGS 67

Query: 62  IKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQ 118
           IKR IRAPRMRWTTTLHAHFVHAVQLLGGH+RATPKSVLELMNVKDLTLAHVKSHLQ
Sbjct: 68  IKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 123

[Close]

BLAST of CmoCh05G002200 vs. NCBI nr
Match: gi|700207438|gb|KGN62557.1| (hypothetical protein Csa_2G360740 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-33
Identity = 81/117 (69.23%), Postives = 90/117 (76.92%), Query Frame = 1


Query: 2   FTSTHMITNTTAPPLPDLSLQISPPSDSGSSGSDLTHENAAFLLPPKTHFKGDAKMGFG- 61
           +++ +  T T  PPLPDLSL ISPPS SG+   +  H +    +    HFK   KMGFG 
Sbjct: 3   YSNNNNNTTTPPPPLPDLSLHISPPSGSGNHYFNHHHHHHQPQIF-SNHFKRGPKMGFGS 62

Query: 62  IKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQ 118
           IKR IRAPRMRWTTTLHAHFVHAVQLLGGH+RATPKSVLELMNVKDLTLAHVKSHLQ
Sbjct: 63  IKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 118

[Close]

BLAST of CmoCh05G002200 vs. NCBI nr
Match: gi|302142391|emb|CBI19594.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 140.2 bits (352), Expect = 2.3e-30
Identity = 85/137 (62.04%), Postives = 94/137 (68.61%), Query Frame = 1


Query: 1   MFTSTHMITNTTAPPLPDLSLQISPPSDSG-----SSGSDLTHENAAFL-LPPKTH---- 60
           MF S++ I  TT+P LPDLSLQISPPS S      S G ++   N   L LP   H    
Sbjct: 1   MFFSSNPIMGTTSP-LPDLSLQISPPSISDCEPMLSLGLEMAALNPPPLELPRNLHHNHH 60

Query: 61  ----------FKGDAKMGFGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLE 118
                     FK +++M  G KR IRAPRMRWTTTLHAHFVHAVQLLGGH+RATPKSVLE
Sbjct: 61  NHQPQIYGREFKRNSRMMNGSKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLE 120

The following BLAST results are available for this feature:

BLAST of CmoCh05G002200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KAN4_ARATH	1.0e-30	57.14	Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1	[more]
KAN3_ARATH	5.5e-24	88.14	Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1	[more]
KAN2_ARATH	4.7e-23	86.44	Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1	[more]
ROLL9_ORYSJ	4.0e-22	87.50	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV...	[more]
KAN1_ARATH	1.2e-21	85.71	Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1	[more]

BLAST of CmoCh05G002200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP74_CUCSA	9.2e-34	69.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360740 PE=4 SV=1	[more]
U5FNQ7_POPTR	6.2e-30	47.54	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s03650g PE=4 SV=1	[more]
A0A0B0NJ58_GOSAR	6.2e-30	50.00	Putative transcription factor KAN4-like protein OS=Gossypium arboreum GN=F383_11...	[more]
A0A151R6J5_CAJCA	2.3e-29	48.62	Putative Myb family transcription factor At1g14600 family OS=Cajanus cajan GN=KK...	[more]
A0A0B0PKZ0_GOSAR	5.2e-29	55.84	Putative transcription factor KAN4-like protein OS=Gossypium arboreum GN=F383_06...	[more]

BLAST of CmoCh05G002200 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42630.1	5.9e-32	57.14	Homeodomain-like superfamily protein	[more]
AT4G17695.1	3.1e-25	88.14	Homeodomain-like superfamily protein	[more]
AT1G32240.1	2.6e-24	86.44	Homeodomain-like superfamily protein	[more]
AT5G16560.1	6.5e-23	85.71	Homeodomain-like superfamily protein	[more]
AT2G42660.1	2.9e-15	68.52	Homeodomain-like superfamily protein	[more]

BLAST of CmoCh05G002200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659087839\|ref\|XP_008444662.1\|	7.0e-35	69.67	PREDICTED: probable transcription factor KAN4 isoform X2 [Cucumis melo]	[more]
gi\|659087837\|ref\|XP_008444661.1\|	7.0e-35	69.67	PREDICTED: probable transcription factor KAN4 isoform X1 [Cucumis melo]	[more]
gi\|778671212\|ref\|XP_004152789.2\|	1.3e-33	69.23	PREDICTED: probable transcription factor KAN4 [Cucumis sativus]	[more]
gi\|700207438\|gb\|KGN62557.1\|	1.3e-33	69.23	hypothetical protein Csa_2G360740 [Cucumis sativus]	[more]
gi\|302142391\|emb\|CBI19594.3\|	2.3e-30	62.04	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR006447	Myb_dom_plants
IPR009057	Homeobox-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080060	integument development
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0044212	transcription regulatory region DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G002200.1	CmoCh05G002200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 69..118 score: 2.
IPR006447	Myb domain, plants	TIGRFAMs	TIGR01557	TIGR01557	coord: 68..117 score: 1.6
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 66..117 score: 1.1
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 65..117 score: 1.79
None	No IPR available	PANTHER	PTHR31496	FAMILY NOT NAMED	coord: 51..117 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G002200	CmaCh05G002130	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G002200	Cla022530	Watermelon (97103) v1	cmowmB748
CmoCh05G002200	Cla020715	Watermelon (97103) v1	cmowmB753
CmoCh05G002200	Csa2G360740	Cucumber (Chinese Long) v2	cmocuB777
CmoCh05G002200	MELO3C010906	Melon (DHL92) v3.5.1	cmomeB718
CmoCh05G002200	ClCG08G015490	Watermelon (Charleston Gray)	cmowcgB716
CmoCh05G002200	ClCG05G019440	Watermelon (Charleston Gray)	cmowcgB706
CmoCh05G002200	CSPI02G19590	Wild cucumber (PI 183967)	cmocpiB782
CmoCh05G002200	Lsi04G016070	Bottle gourd (USVL1VR-Ls)	cmolsiB715
CmoCh05G002200	Lsi08G014290	Bottle gourd (USVL1VR-Ls)	cmolsiB731
CmoCh05G002200	Cp4.1LG07g04670	Cucurbita pepo (Zucchini)	cmocpeB750
CmoCh05G002200	Cp4.1LG11g01630	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G002200	Cp4.1LG02g07170	Cucurbita pepo (Zucchini)	cmocpeB734
CmoCh05G002200	Cp4.1LG06g01440	Cucurbita pepo (Zucchini)	cmocpeB740
CmoCh05G002200	MELO3C010906.2	Melon (DHL92) v3.6.1	cmomedB815
CmoCh05G002200	CsaV3_2G028290	Cucumber (Chinese Long) v3	cmocucB0918
CmoCh05G002200	CsaV3_3G044600	Cucumber (Chinese Long) v3	cmocucB0928
CmoCh05G002200	Cla97C08G159070	Watermelon (97103) v2	cmowmbB802
CmoCh05G002200	Cla97C05G101050	Watermelon (97103) v2	cmowmbB792
CmoCh05G002200	Bhi04G000271	Wax gourd	cmowgoB0944
CmoCh05G002200	CsGy2G019460	Cucumber (Gy14) v2	cgybcmoB238
CmoCh05G002200	Carg25852	Silver-seed gourd	carcmoB0375
CmoCh05G002200	Carg11829	Silver-seed gourd	carcmoB0263
CmoCh05G002200	Carg08748	Silver-seed gourd	carcmoB0147

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh05G002200	CmoCh09G001900	Cucurbita moschata (Rifu)	cmocmoB033
CmoCh05G002200	CmoCh12G004490	Cucurbita moschata (Rifu)	cmocmoB156

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G002200	Silver-seed gourd	carcmoB1097
CmoCh05G002200	Cucumber (Chinese Long) v3	cmocucB0933
CmoCh05G002200	Cucumber (Chinese Long) v3	cmocucB0945
CmoCh05G002200	Watermelon (97103) v2	cmowmbB777
CmoCh05G002200	Wax gourd	cmowgoB0953
CmoCh05G002200	Cucurbita maxima (Rimu)	cmacmoB483
CmoCh05G002200	Cucurbita moschata (Rifu)	cmocmoB369
CmoCh05G002200	Cucurbita moschata (Rifu)	cmocmoB481
CmoCh05G002200	Cucumber (Gy14) v1	cgycmoB0232
CmoCh05G002200	Cucumber (Gy14) v1	cgycmoB0643
CmoCh05G002200	Cucurbita maxima (Rimu)	cmacmoB199
CmoCh05G002200	Cucurbita maxima (Rimu)	cmacmoB662
CmoCh05G002200	Cucurbita maxima (Rimu)	cmacmoB871
CmoCh05G002200	Wild cucumber (PI 183967)	cmocpiB807
CmoCh05G002200	Cucumber (Chinese Long) v2	cmocuB802
CmoCh05G002200	Melon (DHL92) v3.5.1	cmomeB735
CmoCh05G002200	Bottle gourd (USVL1VR-Ls)	cmolsiB708
CmoCh05G002200	Cucumber (Gy14) v2	cgybcmoB832
CmoCh05G002200	Melon (DHL92) v3.6.1	cmomedB826
CmoCh05G002200	Melon (DHL92) v3.6.1	cmomedB832