Carg25852 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25852
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription factor, putative
Location	Cucurbita_argyrosperma_scaffold_356 : 175996 .. 176897 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCACCTCCTCCCATCCCCTCCCGGATCTCTCCTTGCACATAAGTCCGCCGTCAAATTCCGGCAGCACCGGCAGCGATCTCAGCAATGAAACTGCCGGGTTCTATCTTCCGGCTAAACCCCATATGGGTCTACCTCTTGAGCTTGAAACAAGCTTCAACAATGGCCGCCATTTTAACGACCACCTACCTCAAATCTATGGCCGCCATTTTAAAAGAGCTGCAAAAATGGGTATTAGAGCTCCAAGAATGAGATGGACTACAACGCTTCATGCTCATTTTGTCCACGCCGTTCAGCTGCTTGGCGGCCATGAAAGTACATGTCTTGTTGAATTCATATGAAATGCAAATCAAATTCAAATTTCAATGTTTTTTTTAGCTCATTTTGGTTGTTTTTTTTCTAGGGGCAACACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGGTGGGTTTTGGTTAATTAATTGAAATTAAGCAATTAATCACAAATTATTGCACTAATTTCAAATCTTTTTTGTGTTAATTCAGATGTATAGAACAGTGAAAAGCACAGACAAATCAACTGGTAATTACAATCTTTTTCCTTTTTTGATCTGAAAATTGCTCCAAATTTCGATGATTTAGGGTTTTTTTGATCAATTTTGGTGAAATGGATGCTTTGATTGTTGATGTTGCATACTCAGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCAATGTGGAAAAGCTCTGATCAAATGTGAGTGATTTTCTTCCCAAGTTGCGTTTTCGTTTAGATTTTGAAAATCGATAACGAAACAAAGAAACCCACGAATCAAATTTCGAATTTTTGCGTGAAATTCG

mRNA sequence

ATGTTCACCTCCTCCCATCCCCTCCCGGATCTCTCCTTGCACATAAGTCCGCCGTCAAATTCCGGCAGCACCGGCAGCGATCTCAGCAATGAAACTGCCGGGTTCTATCTTCCGGCTAAACCCCATATGGGTCTACCTCTTGAGCTTGAAACAAGCTTCAACAATGGCCGCCATTTTAACGACCACCTACCTCAAATCTATGGCCGCCATTTTAAAAGAGCTGCAAAAATGGGTATTAGAGCTCCAAGAATGAGATGGACTACAACGCTTCATGCTCATTTTGTCCACGCCGTTCAGCTGCTTGGCGGCCATGAAAGGGCAACACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACAGACAAATCAACTGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCAATGTGGAAAAGCTCTGATCAAATGTGAGTGATTTTCTTCCCAAGTTGCGTTTTCGTTTAGATTTTGAAAATCGATAACGAAACAAAGAAACCCACGAATCAAATTTCGAATTTTTGCGTGAAATTCG

Coding sequence (CDS)

ATGTTCACCTCCTCCCATCCCCTCCCGGATCTCTCCTTGCACATAAGTCCGCCGTCAAATTCCGGCAGCACCGGCAGCGATCTCAGCAATGAAACTGCCGGGTTCTATCTTCCGGCTAAACCCCATATGGGTCTACCTCTTGAGCTTGAAACAAGCTTCAACAATGGCCGCCATTTTAACGACCACCTACCTCAAATCTATGGCCGCCATTTTAAAAGAGCTGCAAAAATGGGTATTAGAGCTCCAAGAATGAGATGGACTACAACGCTTCATGCTCATTTTGTCCACGCCGTTCAGCTGCTTGGCGGCCATGAAAGGGCAACACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACAGACAAATCAACTGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCAATGTGGAAAAGCTCTGATCAAATGTGA

Protein sequence

MFTSSHPLPDLSLHISPPSNSGSTGSDLSNETAGFYLPAKPHMGLPLELETSFNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM

Homology

[Close]

BLAST of Carg25852 vs. NCBI nr
Match: XP_022951735.1 (probable transcription factor KAN4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 347.8 bits (891), Expect = 2.1e-92
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MFTSSHPLPDLSLHISPPSNSGSTGSDLSNETAGFYLPAKPHMGLPLELETSFNNGRHFN 60
           MFTSSHPLPDLSLHISPPSNSGSTGSDLSNETAGFYLPAKPHMGLPLELETSFNNGRHFN
Sbjct: 1   MFTSSHPLPDLSLHISPPSNSGSTGSDLSNETAGFYLPAKPHMGLPLELETSFNNGRHFN 60

Query: 61  DHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKD 120
           DHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKD
Sbjct: 61  DHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKD 120

Query: 121 LTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 171
           LTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM
Sbjct: 121 LTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 170

[Close]

BLAST of Carg25852 vs. NCBI nr
Match: XP_022951736.1 (probable transcription factor KAN4 isoform X3 [Cucurbita moschata])

HSP 1 Score: 347.8 bits (891), Expect = 2.1e-92
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MFTSSHPLPDLSLHISPPSNSGSTGSDLSNETAGFYLPAKPHMGLPLELETSFNNGRHFN 60
           MFTSSHPLPDLSLHISPPSNSGSTGSDLSNETAGFYLPAKPHMGLPLELETSFNNGRHFN
Sbjct: 1   MFTSSHPLPDLSLHISPPSNSGSTGSDLSNETAGFYLPAKPHMGLPLELETSFNNGRHFN 60

Query: 61  DHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKD 120
           DHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKD
Sbjct: 61  DHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKD 120

Query: 121 LTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 171
           LTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM
Sbjct: 121 LTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 170

[Close]

BLAST of Carg25852 vs. NCBI nr
Match: XP_022951734.1 (probable transcription factor KAN4 isoform X1 [Cucurbita moschata])

HSP 1 Score: 347.8 bits (891), Expect = 2.1e-92
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MFTSSHPLPDLSLHISPPSNSGSTGSDLSNETAGFYLPAKPHMGLPLELETSFNNGRHFN 60
           MFTSSHPLPDLSLHISPPSNSGSTGSDLSNETAGFYLPAKPHMGLPLELETSFNNGRHFN
Sbjct: 1   MFTSSHPLPDLSLHISPPSNSGSTGSDLSNETAGFYLPAKPHMGLPLELETSFNNGRHFN 60

Query: 61  DHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKD 120
           DHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKD
Sbjct: 61  DHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKD 120

Query: 121 LTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 171
           LTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM
Sbjct: 121 LTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 170

[Close]

BLAST of Carg25852 vs. NCBI nr
Match: XP_023002010.1 (probable transcription factor KAN4 isoform X3 [Cucurbita maxima])

HSP 1 Score: 334.3 bits (856), Expect = 2.4e-88
Identity = 169/178 (94.94%), Postives = 170/178 (95.51%), Query Frame = 0


Query: 1   MFTSSH-----PLPDLSLHISPPSNSGSTGSDLSNETA---GFYLPAKPHMGLPLELETS 60
           MFTSSH     PLPDLSLHISPPSNSGSTGSDLS+ETA   GFYLPAKPHMGLPLELETS
Sbjct: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60

Query: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120
           FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV
Sbjct: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120

Query: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 171
           LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM
Sbjct: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 178

[Close]

BLAST of Carg25852 vs. NCBI nr
Match: XP_023002008.1 (probable transcription factor KAN4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 334.3 bits (856), Expect = 2.4e-88
Identity = 169/178 (94.94%), Postives = 170/178 (95.51%), Query Frame = 0


Query: 1   MFTSSH-----PLPDLSLHISPPSNSGSTGSDLSNETA---GFYLPAKPHMGLPLELETS 60
           MFTSSH     PLPDLSLHISPPSNSGSTGSDLS+ETA   GFYLPAKPHMGLPLELETS
Sbjct: 1   MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETS 60

Query: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120
           FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV
Sbjct: 61  FNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSV 120

Query: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 171
           LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM
Sbjct: 121 LELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 178

[Close]

BLAST of Carg25852 vs. TAIR10
Match: AT5G42630.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 157.9 bits (398), Expect = 5.5e-39
Identity = 95/163 (58.28%), Postives = 107/163 (65.64%), Query Frame = 0


Query: 4   SSHPLPDLSLHISPP-----------------SNSGSTGSDLSNETAGFYLPAKPHMGLP 63
           +S+ +PDLSL IS P                 S+SGS+ SDLS+E   F  P        
Sbjct: 12  ASNSVPDLSLQISLPNYHAGKPLHGGDRSSTSSDSGSSLSDLSHENNFFNKPL------- 71

Query: 64  LELETSFNNGRHFNDHLPQIYGRHFKRAA------KMGIRAPRMRWTTTLHAHFVHAVQL 123
           L L    ++ R  N   PQIYGR FKR++      K  IRAPRMRWT+TLHAHFVHAVQL
Sbjct: 72  LSLGFDHHHQRRSNMFQPQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQL 131

Query: 124 LGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKST 144
           LGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK TDK +
Sbjct: 132 LGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGS 167

[Close]

BLAST of Carg25852 vs. TAIR10
Match: AT4G17695.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-31
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 60  NDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVK 119
           N H  Q   +  +  AK G+RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELM+V+
Sbjct: 143 NRHRRQAQPQPPRFTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQ 202

Query: 120 DLTLAHVKSHLQMYRTVKSTDKSTALKNQ 149
           DLTLAHVKSHLQMYRT+KST+K T    Q
Sbjct: 203 DLTLAHVKSHLQMYRTIKSTEKPTTSSGQ 231

[Close]

BLAST of Carg25852 vs. TAIR10
Match: AT1G32240.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 127.5 bits (319), Expect = 7.9e-30
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 75  AKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 134
           AK  +RAPRMRWTTTLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQMYR
Sbjct: 207 AKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 266

Query: 135 TVKSTDKSTALKNQ 149
           TVK+TDK+ A   Q
Sbjct: 267 TVKTTDKAAASSGQ 280

[Close]

BLAST of Carg25852 vs. TAIR10
Match: AT5G16560.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-27
Identity = 64/100 (64.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 72  KRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 131
           K   K  +RAPRMRWT++LHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQ
Sbjct: 210 KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 269

Query: 132 MYRTVKSTDKSTALK--NQRQEVDPSGAEISNPMWKSSDQ 170
           MYRTVK+T+K  A    +  +E+  +G E+ +    S+DQ
Sbjct: 270 MYRTVKTTNKPAASSDGSGEEEMGINGNEVHHQ--SSTDQ 307

[Close]

BLAST of Carg25852 vs. TAIR10
Match: AT2G38300.1 (myb-like HTH transcriptional regulator family protein)

HSP 1 Score: 84.7 bits (208), Expect = 5.9e-17
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 80  RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKST 139
           + PR+RWT  LH  FV AV+ LGG ERATPK V ++MN+K L++AHVKSHLQMYR+ K  
Sbjct: 53  KVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRSKKID 112

Query: 140 DKSTALKNQRQEVDPS 156
           D+  A+   +   + S
Sbjct: 113 DQGQAIAGHKHLFETS 128

[Close]

BLAST of Carg25852 vs. Swiss-Prot
Match: sp|Q9FJV5|KAN4_ARATH (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.9e-38
Identity = 95/163 (58.28%), Postives = 107/163 (65.64%), Query Frame = 0


Query: 4   SSHPLPDLSLHISPP-----------------SNSGSTGSDLSNETAGFYLPAKPHMGLP 63
           +S+ +PDLSL IS P                 S+SGS+ SDLS+E   F  P        
Sbjct: 12  ASNSVPDLSLQISLPNYHAGKPLHGGDRSSTSSDSGSSLSDLSHENNFFNKPL------- 71

Query: 64  LELETSFNNGRHFNDHLPQIYGRHFKRAA------KMGIRAPRMRWTTTLHAHFVHAVQL 123
           L L    ++ R  N   PQIYGR FKR++      K  IRAPRMRWT+TLHAHFVHAVQL
Sbjct: 72  LSLGFDHHHQRRSNMFQPQIYGRDFKRSSSSMVGLKRSIRAPRMRWTSTLHAHFVHAVQL 131

Query: 124 LGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKST 144
           LGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK TDK +
Sbjct: 132 LGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCTDKGS 167

[Close]

BLAST of Carg25852 vs. Swiss-Prot
Match: sp|Q941I2|KAN3_ARATH (Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.6e-30
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 60  NDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVK 119
           N H  Q   +  +  AK G+RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELM+V+
Sbjct: 143 NRHRRQAQPQPPRFTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQ 202

Query: 120 DLTLAHVKSHLQMYRTVKSTDKSTALKNQ 149
           DLTLAHVKSHLQMYRT+KST+K T    Q
Sbjct: 203 DLTLAHVKSHLQMYRTIKSTEKPTTSSGQ 231

[Close]

BLAST of Carg25852 vs. Swiss-Prot
Match: sp|Q9C616|KAN2_ARATH (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-28
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 75  AKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 134
           AK  +RAPRMRWTTTLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQMYR
Sbjct: 207 AKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 266

Query: 135 TVKSTDKSTALKNQ 149
           TVK+TDK+ A   Q
Sbjct: 267 TVKTTDKAAASSGQ 280

[Close]

BLAST of Carg25852 vs. Swiss-Prot
Match: sp|Q0J235|ROLL9_ORYSJ (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 5.4e-28
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 72  KRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 131
           K  AK  +RAPRMRWT+TLHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQ
Sbjct: 315 KLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 374

Query: 132 MYRTVKSTDK 142
           MYRTVKSTDK
Sbjct: 375 MYRTVKSTDK 384

[Close]

BLAST of Carg25852 vs. Swiss-Prot
Match: sp|Q93WJ9|KAN1_ARATH (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.9e-26
Identity = 64/100 (64.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 72  KRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 131
           K   K  +RAPRMRWT++LHA FVHAV+LLGGHERATPKSVLELM+VKDLTLAHVKSHLQ
Sbjct: 210 KMPTKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 269

Query: 132 MYRTVKSTDKSTALK--NQRQEVDPSGAEISNPMWKSSDQ 170
           MYRTVK+T+K  A    +  +E+  +G E+ +    S+DQ
Sbjct: 270 MYRTVKTTNKPAASSDGSGEEEMGINGNEVHHQ--SSTDQ 307

[Close]

BLAST of Carg25852 vs. TrEMBL
Match: tr|A0A2P6PYC8|A0A2P6PYC8_ROSCH (Putative transcription factor MYB-HB-like family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0300071 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 109/199 (54.77%), Postives = 128/199 (64.32%), Query Frame = 0


Query: 1   MFTSSHPLPDLSLHISPPS--------------------NSGSTGSDLSNETAGFYLPAK 60
           M T+S PLPDLSL ISPPS                    +S S+GSDLS+E   ++L  +
Sbjct: 12  MRTTSSPLPDLSLQISPPSDHYEMGLARKALNGDRSSTADSTSSGSDLSHENVLYHLDQR 71

Query: 61  -----------PHMGLPLELETSFNNG--------RHFNDHLPQIYGRHFKRAA------ 120
                      P++ L LE++   ++         R+FN H PQIYGR FKR+A      
Sbjct: 72  TNYNLTSAEPEPNLSLGLEMKDIMSSSTSSTPLLPRNFNHHHPQIYGRDFKRSARTVMNV 131

Query: 121 KMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 154
           K  +RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT
Sbjct: 132 KRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 191

[Close]

BLAST of Carg25852 vs. TrEMBL
Match: tr|M5XJ68|M5XJ68_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021685mg PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.6e-40
Identity = 110/193 (56.99%), Postives = 119/193 (61.66%), Query Frame = 0


Query: 3   TSSHPLPDLSLHISPPS---------------------------NSGSTGSDLSNETAGF 62
           TS+ PLPDLSL ISPPS                           +SGS+GSDLS+E  GF
Sbjct: 7   TSTSPLPDLSLQISPPSAADNQYHQADIGLSRKALYSTDRSSTTDSGSSGSDLSHEN-GF 66

Query: 63  Y---------------------LPAKPHMGL-PLELETSFNNGRHFNDHLPQIYGRHFKR 122
           Y                        K HM L P++L  +F+N  HF+ H PQIYGR FKR
Sbjct: 67  YHLERSTGYNLSSADEPKLSLGFEMKDHMSLPPVQLPRNFSN-HHFHHH-PQIYGRQFKR 126

Query: 123 AA------KMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVK 141
            A      K  IRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVK
Sbjct: 127 NARTVGNVKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVK 186

[Close]

BLAST of Carg25852 vs. TrEMBL
Match: tr|A0A0F6QEM6|A0A0F6QEM6_9ROSA (Aberrant testa shape OS=Prunus incisa OX=137206 GN=ATS PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.6e-40
Identity = 109/193 (56.48%), Postives = 120/193 (62.18%), Query Frame = 0


Query: 3   TSSHPLPDLSLHISPP---------------------------SNSGSTGSDLSNETAGF 62
           TS+ PLPDLSL ISPP                           ++SGS+GSDLS+E  GF
Sbjct: 7   TSTSPLPDLSLQISPPAAADNQYHQADIGLSRKALYSTDRSSTTDSGSSGSDLSHEN-GF 66

Query: 63  Y---------------------LPAKPHMGL-PLELETSFNNGRHFNDHLPQIYGRHFKR 122
           Y                        K HM L P++L  +F+N  HF+ H PQIYGR FKR
Sbjct: 67  YHLERSNGYNLSSVDEPKLSLGFEMKDHMSLPPVQLPRNFSN-HHFHHH-PQIYGREFKR 126

Query: 123 AA------KMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVK 141
           +A      K  IRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVK
Sbjct: 127 SARTVGNVKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVK 186

[Close]

BLAST of Carg25852 vs. TrEMBL
Match: tr|A0A251RA19|A0A251RA19_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G387800 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.1e-40
Identity = 113/202 (55.94%), Postives = 123/202 (60.89%), Query Frame = 0


Query: 3   TSSHPLPDLSLHISPPS---------------------------NSGSTGSDLSNETAGF 62
           TS+ PLPDLSL ISPPS                           +SGS+GSDLS+E  GF
Sbjct: 10  TSTSPLPDLSLQISPPSAADNQYHQADIGLSRKALYSTDRSSTTDSGSSGSDLSHEN-GF 69

Query: 63  Y---------------------LPAKPHMGL-PLELETSFNNGRHFNDHLPQIYGRHFKR 122
           Y                        K HM L P++L  +F+N  HF+ H PQIYGR FKR
Sbjct: 70  YHLERSTGYNLSSADEPKLSLGFEMKDHMSLPPVQLPRNFSN-HHFHHH-PQIYGRQFKR 129

Query: 123 AA------KMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVK 149
            A      K  IRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVK
Sbjct: 130 NARTVGNVKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVK 189

[Close]

BLAST of Carg25852 vs. TrEMBL
Match: tr|F6H1F3|F6H1F3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g11390 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.7e-40
Identity = 106/191 (55.50%), Postives = 120/191 (62.83%), Query Frame = 0


Query: 4   SSHPLPDLSLHISPPS---------------------------NSGSTGSDLSNETAGFY 63
           ++ PLPDLSL ISPPS                           +SGS+GSDLS+E  GF+
Sbjct: 3   TTSPLPDLSLQISPPSISDCEVKEVGYDGFMKKSFYSDRSSATDSGSSGSDLSHEN-GFF 62

Query: 64  L--------PAKPHMGL----------PLELETSFNNGRHFNDHLPQIYGRHFKRAAKM- 123
                    P +P + L          PLEL  + ++  H  +H PQIYGR FKR ++M 
Sbjct: 63  SPESGFNRGPVEPMLSLGLEMAALNPPPLELPRNLHHNHH--NHQPQIYGREFKRNSRMM 122

Query: 124 -----GIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM 144
                 IRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM
Sbjct: 123 NGSKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM 182

The following BLAST results are available for this feature:

BLAST of Carg25852 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951735.1	2.1e-92	100.00	probable transcription factor KAN4 isoform X2 [Cucurbita moschata]	[more]
XP_022951736.1	2.1e-92	100.00	probable transcription factor KAN4 isoform X3 [Cucurbita moschata]	[more]
XP_022951734.1	2.1e-92	100.00	probable transcription factor KAN4 isoform X1 [Cucurbita moschata]	[more]
XP_023002010.1	2.4e-88	94.94	probable transcription factor KAN4 isoform X3 [Cucurbita maxima]	[more]
XP_023002008.1	2.4e-88	94.94	probable transcription factor KAN4 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg25852 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42630.1	5.5e-39	58.28	Homeodomain-like superfamily protein	[more]
AT4G17695.1	1.4e-31	74.16	Homeodomain-like superfamily protein	[more]
AT1G32240.1	7.9e-30	83.78	Homeodomain-like superfamily protein	[more]
AT5G16560.1	2.2e-27	64.00	Homeodomain-like superfamily protein	[more]
AT2G38300.1	5.9e-17	52.63	myb-like HTH transcriptional regulator family protein	[more]

BLAST of Carg25852 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FJV5\|KAN4_ARATH	9.9e-38	58.28	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]
sp\|Q941I2\|KAN3_ARATH	2.6e-30	74.16	Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 ...	[more]
sp\|Q9C616\|KAN2_ARATH	1.4e-28	83.78	Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 ...	[more]
sp\|Q0J235\|ROLL9_ORYSJ	5.4e-28	87.14	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL...	[more]
sp\|Q93WJ9\|KAN1_ARATH	3.9e-26	64.00	Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1	[more]

BLAST of Carg25852 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P6PYC8\|A0A2P6PYC8_ROSCH	1.1e-41	54.77	Putative transcription factor MYB-HB-like family OS=Rosa chinensis OX=74649 GN=R...	[more]
tr\|M5XJ68\|M5XJ68_PRUPE	1.6e-40	56.99	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021685mg PE=4 SV=1	[more]
tr\|A0A0F6QEM6\|A0A0F6QEM6_9ROSA	1.6e-40	56.48	Aberrant testa shape OS=Prunus incisa OX=137206 GN=ATS PE=4 SV=1	[more]
tr\|A0A251RA19\|A0A251RA19_PRUPE	2.1e-40	55.94	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G387800 PE=4 SV=1	[more]
tr\|F6H1F3\|F6H1F3_VITVI	2.7e-40	55.50	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g11390 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR006447	Myb_dom_plants
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25852-RA	Carg25852-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 83..134 e-value: 5.4E-8 score: 32.8
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 82..135 e-value: 6.6E-24 score: 82.0
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 79..139 e-value: 3.5E-25 score: 89.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..170
None	No IPR available	PANTHER	PTHR31496	FAMILY NOT NAMED	coord: 3..150
None	No IPR available	PANTHER	PTHR31496:SF12	TRANSCRIPTION FACTOR KAN4-RELATED	coord: 3..150
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 79..136

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25852	Cla022530	Watermelon (97103) v1	carwmB0263
Carg25852	Csa2G360740	Cucumber (Chinese Long) v2	carcuB0299
Carg25852	MELO3C010906	Melon (DHL92) v3.5.1	carmeB0274
Carg25852	ClCG08G015490	Watermelon (Charleston Gray)	carwcgB0264
Carg25852	CSPI02G19590	Wild cucumber (PI 183967)	carcpiB0303
Carg25852	Cucsa.232510	Cucumber (Gy14) v1	carcgyB0322
Carg25852	CmaCh05G002130	Cucurbita maxima (Rimu)	carcmaB0378
Carg25852	CmaCh12G005060	Cucurbita maxima (Rimu)	carcmaB0377
Carg25852	CmoCh05G002200	Cucurbita moschata (Rifu)	carcmoB0375
Carg25852	CmoCh12G004490	Cucurbita moschata (Rifu)	carcmoB0374
Carg25852	Lsi08G014290	Bottle gourd (USVL1VR-Ls)	carlsiB245
Carg25852	Cp4.1LG11g01630	Cucurbita pepo (Zucchini)	carcpeB0382
Carg25852	Cp4.1LG07g04670	Cucurbita pepo (Zucchini)	carcpeB0383
Carg25852	CsGy2G019460	Cucumber (Gy14) v2	carcgybB0286
Carg25852	MELO3C010906.2	Melon (DHL92) v3.6.1	carmedB0286
Carg25852	CsaV3_2G028290	Cucumber (Chinese Long) v3	carcucB0302
Carg25852	Cla97C08G159070	Watermelon (97103) v2	carwmbB0280
Carg25852	Bhi04G000271	Wax gourd	carwgoB0356

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25852	Carg11829	Silver-seed gourd	carcarB215

The following block(s) are covering this gene:

None