CmoCh04G031600 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G031600
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr04 : 21857193 .. 21857660 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCGATCCCCAACCTTCCGGTTTTACTTGCAAATCAGCCCGTCATCATGTTAGCCACCGCCGCTGCCGCCGCCTCTTTTTGGCTTCGTTCCAGTCGGAGCCGCTTTTTCATTCTCTTGCTTTGTTCCCCCCTCCTCGTTCCCATTTTCTGCGCTACTTTCCCCATCATCTGTGCCATAGAGCTCTGTATCCGCCTTGCTCGTCACAGGATAAGGATATGTCTTCGCGATTCCCCAGAAAGCGAACGGTTGCGGCGATGTGAGGAAGGCGGCTGCAGATCAGCGCTCCCGGAGAAGGTTGGCGATGATGGGGAGGAGGATATCGGCCTATTACAGAGGTACTTGGATGATCAGCTACTGCTTGTTCGATCTGTTTATGAATGTGGGGATTGTGCCGACGACTTAAGTGGGGATGCTCGATTTTGTGACATTGAAAATAGCAATTTGATTCCACTATTAGGCTGA

mRNA sequence

ATGTCTTCGATCCCCAACCTTCCGGTTTTACTTGCAAATCAGCCCGTCATCATGTTAGCCACCGCCGCTGCCGCCGCCTCTTTTTGGCTTCGTTCCAGTCGGAGCCGCTTTTTCATTCTCTTGCTTTGTTCCCCCCTCCTCGTTCCCATTTTCTGCGCTACTTTCCCCATCATCTGTGCCATAGAGCTCTGTATCCGCCTTGCTCGTCACAGGATAAGGATATGTCTTCGCGATTCCCCAGAAAGCGAACGGTTGCGGCGATGTGAGGAAGGCGGCTGCAGATCAGCGCTCCCGGAGAAGGTTGGCGATGATGGGGAGGAGGATATCGGCCTATTACAGAGGTACTTGGATGATCAGCTACTGCTTGTTCGATCTGTTTATGAATGTGGGGATTGTGCCGACGACTTAAGTGGGGATGCTCGATTTTGTGACATTGAAAATAGCAATTTGATTCCACTATTAGGCTGA

Coding sequence (CDS)

ATGTCTTCGATCCCCAACCTTCCGGTTTTACTTGCAAATCAGCCCGTCATCATGTTAGCCACCGCCGCTGCCGCCGCCTCTTTTTGGCTTCGTTCCAGTCGGAGCCGCTTTTTCATTCTCTTGCTTTGTTCCCCCCTCCTCGTTCCCATTTTCTGCGCTACTTTCCCCATCATCTGTGCCATAGAGCTCTGTATCCGCCTTGCTCGTCACAGGATAAGGATATGTCTTCGCGATTCCCCAGAAAGCGAACGGTTGCGGCGATGTGAGGAAGGCGGCTGCAGATCAGCGCTCCCGGAGAAGGTTGGCGATGATGGGGAGGAGGATATCGGCCTATTACAGAGGTACTTGGATGATCAGCTACTGCTTGTTCGATCTGTTTATGAATGTGGGGATTGTGCCGACGACTTAAGTGGGGATGCTCGATTTTGTGACATTGAAAATAGCAATTTGATTCCACTATTAGGCTGA
Homology
[Close]
BLAST of CmoCh04G031600 vs. TrEMBL
Match: W9R0H8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008293 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.1e-24
Identity = 70/139 (50.36%), Postives = 90/139 (64.75%), Query Frame = 1 

Query: 18  MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 77
           MLATAA+++S WLR+   R+ +L LCSP+L+P  CA FP++CA ELC+RL R R R  + 
Sbjct: 1   MLATAASSSSTWLRARPIRYLVLFLCSPILLPFLCAVFPLLCAAELCLRLCRRR-RGKIS 60

Query: 78  DSPE--SERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADD 137
           D  E   ERLRRCEEG C      + G   E  I LLQRYL+DQLLLV S+Y+CGD   +
Sbjct: 61  DGSEENDERLRRCEEGNCGGRDTTERGGVEEIGIMLLQRYLEDQLLLVGSMYDCGD-DGE 120

Query: 138 LSGDARFCDIENSNLIPLL 155
           L  D    D ++   +PLL
Sbjct: 121 LEEDFGAGDDDSRATVPLL 137

[Close]
BLAST of CmoCh04G031600 vs. TrEMBL
Match: K7ME94_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G276200 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.6e-23
Identity = 66/117 (56.41%), Postives = 77/117 (65.81%), Query Frame = 1 

Query: 15  PVIMLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRI 74
           P  ML  AAAAAS WLR  R R+F LLLCSPLL+ + CA  P +CA ELC+R  R   R 
Sbjct: 45  PSCMLTRAAAAASSWLRHRRIRYFFLLLCSPLLLIVLCAVLPFLCAAELCLR-RRGLWRK 104

Query: 75  CLRDSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGD 132
            LR    S+RLRRCEEG C         ++ EE+ GLL RYL+DQLLLV S+YECGD
Sbjct: 105 ILRRGDASDRLRRCEEGCCHE-------EEQEEEKGLLHRYLEDQLLLVGSMYECGD 153

[Close]
BLAST of CmoCh04G031600 vs. TrEMBL
Match: M5XT02_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011823mg PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-22
Identity = 68/127 (53.54%), Postives = 87/127 (68.50%), Query Frame = 1 

Query: 8   PVLLANQPVIMLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRL 67
           P  +   P+IMLA AA++++ WLR+ RSR+  LL+CSP+L+P  CATFP +CA ELC+RL
Sbjct: 55  PFPILATPLIMLA-AASSSTTWLRARRSRYLFLLICSPILIPFLCATFPFLCAAELCLRL 114

Query: 68  ARHRIRICL---RDSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVR 127
            R R RI      D    ERLRRCEEG        + G+   E++GLLQRYL+DQLLLV 
Sbjct: 115 CRRR-RIKNAHGADEEVEERLRRCEEG--------RGGE--REEMGLLQRYLEDQLLLVG 169

Query: 128 SVYECGD 132
           SVY+CGD
Sbjct: 175 SVYDCGD 169

[Close]
BLAST of CmoCh04G031600 vs. TrEMBL
Match: E6NUE3_JATCU (JHL25P11.1 protein OS=Jatropha curcas GN=JHL25P11.1 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-22
Identity = 64/127 (50.39%), Postives = 86/127 (67.72%), Query Frame = 1 

Query: 5   PNLPVLLANQPVIMLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELC 64
           P  P + +    IM+A+A+     WLR+ RSR   L+LCSP+L+P  CA FP++CA+ELC
Sbjct: 40  PPPPTMFSPLRQIMVASAS-----WLRTRRSRCLFLILCSPILLPFLCAIFPLLCAVELC 99

Query: 65  IRLARHRIRICLRDSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVR 124
           IR+ R   R+      E ERLRRCEEG C     +++  +G+E +GLLQRYL+DQLLLV 
Sbjct: 100 IRICRRGQRM-KEGEDEEERLRRCEEGYCNC---DRLVGEGKE-VGLLQRYLEDQLLLVG 156

Query: 125 SVYECGD 132
           S+YECGD
Sbjct: 160 SMYECGD 156

[Close]
BLAST of CmoCh04G031600 vs. TrEMBL
Match: A0A067JX21_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20265 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-22
Identity = 64/127 (50.39%), Postives = 86/127 (67.72%), Query Frame = 1 

Query: 5   PNLPVLLANQPVIMLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELC 64
           P  P + +    IM+A+A+     WLR+ RSR   L+LCSP+L+P  CA FP++CA+ELC
Sbjct: 43  PPPPTMFSPLRQIMVASAS-----WLRTRRSRCLFLILCSPILLPFLCAIFPLLCAVELC 102

Query: 65  IRLARHRIRICLRDSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVR 124
           IR+ R   R+      E ERLRRCEEG C     +++  +G+E +GLLQRYL+DQLLLV 
Sbjct: 103 IRICRRGQRM-KEGEDEEERLRRCEEGYCNC---DRLVGEGKE-VGLLQRYLEDQLLLVG 159

Query: 125 SVYECGD 132
           S+YECGD
Sbjct: 163 SMYECGD 159

[Close]
BLAST of CmoCh04G031600 vs. TAIR10
Match: AT1G35430.1 (AT1G35430.1 unknown protein)

HSP 1 Score: 104.8 bits (260), Expect = 5.0e-23
Identity = 61/115 (53.04%), Postives = 75/115 (65.22%), Query Frame = 1 

Query: 28  FWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRL-ARHRIRICLRDSPESERLR 87
           FWLR+ RSRF   LLCSPLL+PI CA+ PI+CA+E+  RL +RH          +  RLR
Sbjct: 6   FWLRTRRSRFVFFLLCSPLLIPILCASIPILCAVEIFSRLRSRHPWFAKSTAEEDDLRLR 65

Query: 88  RCEEG-GCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLSGDA 141
           RCEEG GC        G D  E+ GLLQRYL+DQL+LVRSVY+CG+   D   D+
Sbjct: 66  RCEEGCGCG-------GFDEPEEAGLLQRYLEDQLVLVRSVYDCGEEDQDQDQDS 113

[Close]
BLAST of CmoCh04G031600 vs. TAIR10
Match: AT4G09170.1 (AT4G09170.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-09
Identity = 43/121 (35.54%), Postives = 66/121 (54.55%), Query Frame = 1 

Query: 17  IMLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRI-- 76
           +ML  A+  ++ W     SR   L+LCSPLL    C + P++CA+E+  RL    ++   
Sbjct: 13  VMLTCASCFSTRW-----SRIIFLILCSPLL----CLSIPLLCAVEIFSRLLSRIVKPPP 72

Query: 77  ------CLRDSPESERLRRCEEG-GCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVY 129
                  L D  ++ RLR+CEEG G +        +D  E+ GLL RYLD+QL L R+++
Sbjct: 73  SSAVSKVLVDDEDNLRLRQCEEGFGMKE-------EDENEESGLLHRYLDNQLSLARTIF 117

[Close]
BLAST of CmoCh04G031600 vs. NCBI nr
Match: gi|658007942|ref|XP_008339152.1| (PREDICTED: uncharacterized protein LOC103402194 [Malus domestica])

HSP 1 Score: 133.3 bits (334), Expect = 3.7e-28
Identity = 74/140 (52.86%), Postives = 100/140 (71.43%), Query Frame = 1 

Query: 18  MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 77
           MLA A+++++ WLR+ R R+ +LLLCSP+L+P  CA FP++CA ELC+RL R RI+    
Sbjct: 1   MLAAASSSSTTWLRAHRIRYLVLLLCSPILIPFLCAIFPLLCAAELCLRLCRRRIKTSHD 60

Query: 78  DS-PESERLRRCEEG-GCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECG-DCAD 137
           ++  E ER+RRCEEG G  SA      +DG+E++GLLQRYL+DQLLLV SVY+CG D +D
Sbjct: 61  EAGEEEERMRRCEEGRGSGSAAAAAGKEDGKEEMGLLQRYLEDQLLLVGSVYDCGDDDSD 120

Query: 138 DLSGDARFCDIENSNLIPLL 155
           DL  +    D  +SN  PLL
Sbjct: 121 DLYHEIHDYD-NDSNTTPLL 139

[Close]
BLAST of CmoCh04G031600 vs. NCBI nr
Match: gi|1009166250|ref|XP_015901491.1| (PREDICTED: uncharacterized protein LOC107434530 [Ziziphus jujuba])

HSP 1 Score: 129.8 bits (325), Expect = 4.1e-27
Identity = 75/126 (59.52%), Postives = 91/126 (72.22%), Query Frame = 1 

Query: 18  MLATAAAAASF--WLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLA-RHRIRI 77
           MLA AAAA+S   WLR+ RSR+  L LC P+L+P  CATFP++CA ELC+RL  R R+R 
Sbjct: 1   MLAAAAAASSSSNWLRAGRSRYLCLCLCFPILLPFLCATFPLLCAAELCVRLCRRQRLRK 60

Query: 78  CLRDSPE-SERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCA 137
             RDS E  ERLRRCEEG C +AL E      EE++GLLQRYL+DQL+LV SVY+CGD  
Sbjct: 61  IARDSKEDDERLRRCEEGRCGAALEE------EEEVGLLQRYLEDQLMLVGSVYDCGD-- 118

Query: 138 DDLSGD 140
           DD+  D
Sbjct: 121 DDVDED 118

[Close]
BLAST of CmoCh04G031600 vs. NCBI nr
Match: gi|694368435|ref|XP_009362437.1| (PREDICTED: uncharacterized protein LOC103952557 [Pyrus x bretschneideri])

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-24
Identity = 68/139 (48.92%), Postives = 95/139 (68.35%), Query Frame = 1 

Query: 19  LATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLRD 78
           +  AA++++ WLR+ R R+  LLLCSP+L+P  CA FP++CA ELC+ L R RI+I   +
Sbjct: 1   MLAAASSSTTWLRAHRIRYLFLLLCSPILIPFLCAIFPLLCAAELCLHLCRRRIKISHDE 60

Query: 79  S-PESERLRRCEEGGCRSALPEKVG-DDGEEDIGLLQRYLDDQLLLVRSVYEC-GDCADD 138
           +  E E++RRCEEG    +    VG +D +E++GLLQRYL+DQLLLV SVY+C  D +DD
Sbjct: 61  AGEEEEQMRRCEEGRSSGSAAAAVGKEDMKEEMGLLQRYLEDQLLLVGSVYDCRDDDSDD 120

Query: 139 LSGDARFCDIENSNLIPLL 155
           L  +    D  +SN  PLL
Sbjct: 121 LYHEIHDYD-NDSNTTPLL 138

[Close]
BLAST of CmoCh04G031600 vs. NCBI nr
Match: gi|703096633|ref|XP_010095896.1| (hypothetical protein L484_008293 [Morus notabilis])

HSP 1 Score: 119.0 bits (297), Expect = 7.3e-24
Identity = 70/139 (50.36%), Postives = 90/139 (64.75%), Query Frame = 1 

Query: 18  MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 77
           MLATAA+++S WLR+   R+ +L LCSP+L+P  CA FP++CA ELC+RL R R R  + 
Sbjct: 1   MLATAASSSSTWLRARPIRYLVLFLCSPILLPFLCAVFPLLCAAELCLRLCRRR-RGKIS 60

Query: 78  DSPE--SERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADD 137
           D  E   ERLRRCEEG C      + G   E  I LLQRYL+DQLLLV S+Y+CGD   +
Sbjct: 61  DGSEENDERLRRCEEGNCGGRDTTERGGVEEIGIMLLQRYLEDQLLLVGSMYDCGD-DGE 120

Query: 138 LSGDARFCDIENSNLIPLL 155
           L  D    D ++   +PLL
Sbjct: 121 LEEDFGAGDDDSRATVPLL 137

[Close]
BLAST of CmoCh04G031600 vs. NCBI nr
Match: gi|764587237|ref|XP_011464755.1| (PREDICTED: uncharacterized protein LOC101311100 [Fragaria vesca subsp. vesca])

HSP 1 Score: 116.7 bits (291), Expect = 3.6e-23
Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 1 

Query: 19  LATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICL-R 78
           +  AA+++S WLR+ RSR   L+LCSP+L+P   ATFP++CA EL +RL R R R  L R
Sbjct: 1   MLAAASSSSTWLRARRSRCVFLILCSPILIPFLFATFPLLCAAELFLRLCRLRSRGKLAR 60

Query: 79  DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS 138
           +  E +R+RRCEEG C +   E+      E++GLLQRYL+DQLLLV SVY+CG+  +DL 
Sbjct: 61  NEAEDDRVRRCEEGRCAAEAEER------EEMGLLQRYLEDQLLLVGSVYDCGEYDEDLY 120

Query: 139 GDARFCDIENSNLIPLL 155
              +  D  +SN  PLL
Sbjct: 121 QGIQGYDDNDSN-TPLL 130

The following BLAST results are available for this feature:
BLAST of CmoCh04G031600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G031600 vs. TrEMBL
Match NameE-valueIdentityDescription
W9R0H8_9ROSA5.1e-2450.36Uncharacterized protein OS=Morus notabilis GN=L484_008293 PE=4 SV=1[more]
K7ME94_SOYBN9.6e-2356.41Uncharacterized protein OS=Glycine max GN=GLYMA_15G276200 PE=4 SV=1[more]
M5XT02_PRUPE2.8e-2253.54Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011823mg PE=4 SV=1[more]
E6NUE3_JATCU3.6e-2250.39JHL25P11.1 protein OS=Jatropha curcas GN=JHL25P11.1 PE=4 SV=1[more]
A0A067JX21_JATCU3.6e-2250.39Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20265 PE=4 SV=1[more]
BLAST of CmoCh04G031600 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G35430.15.0e-2353.04 unknown protein[more]
AT4G09170.11.4e-0935.54 unknown protein[more]
BLAST of CmoCh04G031600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|658007942|ref|XP_008339152.1|3.7e-2852.86PREDICTED: uncharacterized protein LOC103402194 [Malus domestica][more]
gi|1009166250|ref|XP_015901491.1|4.1e-2759.52PREDICTED: uncharacterized protein LOC107434530 [Ziziphus jujuba][more]
gi|694368435|ref|XP_009362437.1|1.5e-2448.92PREDICTED: uncharacterized protein LOC103952557 [Pyrus x bretschneideri][more]
gi|703096633|ref|XP_010095896.1|7.3e-2450.36hypothetical protein L484_008293 [Morus notabilis][more]
gi|764587237|ref|XP_011464755.1|3.6e-2349.64PREDICTED: uncharacterized protein LOC101311100 [Fragaria vesca subsp. vesca][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G031600.1CmoCh04G031600.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36322FAMILY NOT NAMEDcoord: 13..155
score: 4.3
NoneNo IPR availablePANTHERPTHR36322:SF1SUBFAMILY NOT NAMEDcoord: 13..155
score: 4.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G031600Cla011950Watermelon (97103) v1cmowmB723
CmoCh04G031600ClCG11G008540Watermelon (Charleston Gray)cmowcgB622
CmoCh04G031600Cla97C11G215030Watermelon (97103) v2cmowmbB702
CmoCh04G031600Carg06111Silver-seed gourdcarcmoB0033
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None