ClCG11G008540 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG11G008540
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	JHL25P11.1 protein
Location	CG_Chr11 : 12388043 .. 12388459 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGCCGCCGCCTCTTCCTGGCTTCATTCCAGCCGGAGCCGGAGCCGTAGCCGCTTTCTCTTTCTCTTGGTTTGTTCCCCTCTCTTCATTCCCATTTTCTGCGCTACTTTCCCCTTCATCTTTGCCATAGATCTCTGCATCCGCCTTGCTCGTCACAGGAGAAGGATATATCTTCACGATTCACCAGAAATCGAACGCTTGCAGGAATGTGAGGAAGGCGGCTGCAGACCACCGCTTCCGGAGCAGATTGGCGGTGACAGTGGGGAGGAGATCGGCTTATTACAGAGGTACTTGGATGATCAGCTACTGCTCGTTCGTTCTGTTTATGAATGTGCTGATTGTAGCGACCACTTAAATGGGGATCCTCCATTTTGTAACATTAAAAATAGTAATTTGACTCCACTATTAGGTTGA

mRNA sequence

ATGTTAGCCGCCGCCTCTTCCTGGCTTCATTCCAGCCGGAGCCGGAGCCGTAGCCGCTTTCTCTTTCTCTTGGTTTGTTCCCCTCTCTTCATTCCCATTTTCTGCGCTACTTTCCCCTTCATCTTTGCCATAGATCTCTGCATCCGCCTTGCTCGTCACAGGAGAAGGATATATCTTCACGATTCACCAGAAATCGAACGCTTGCAGGAATGTGAGGAAGGCGGCTGCAGACCACCGCTTCCGGAGCAGATTGGCGGTGACAGTGGGGAGGAGATCGGCTTATTACAGAGGTACTTGGATGATCAGCTACTGCTCGTTCGTTCTGTTTATGAATGTGCTGATTGTAGCGACCACTTAAATGGGGATCCTCCATTTTGTAACATTAAAAATAGTAATTTGACTCCACTATTAGGTTGA

Coding sequence (CDS)

ATGTTAGCCGCCGCCTCTTCCTGGCTTCATTCCAGCCGGAGCCGGAGCCGTAGCCGCTTTCTCTTTCTCTTGGTTTGTTCCCCTCTCTTCATTCCCATTTTCTGCGCTACTTTCCCCTTCATCTTTGCCATAGATCTCTGCATCCGCCTTGCTCGTCACAGGAGAAGGATATATCTTCACGATTCACCAGAAATCGAACGCTTGCAGGAATGTGAGGAAGGCGGCTGCAGACCACCGCTTCCGGAGCAGATTGGCGGTGACAGTGGGGAGGAGATCGGCTTATTACAGAGGTACTTGGATGATCAGCTACTGCTCGTTCGTTCTGTTTATGAATGTGCTGATTGTAGCGACCACTTAAATGGGGATCCTCCATTTTGTAACATTAAAAATAGTAATTTGACTCCACTATTAGGTTGA

Protein sequence

MLAAASSWLHSSRSRSRSRFLFLLVCSPLFIPIFCATFPFIFAIDLCIRLARHRRRIYLHDSPEIERLQECEEGGCRPPLPEQIGGDSGEEIGLLQRYLDDQLLLVRSVYECADCSDHLNGDPPFCNIKNSNLTPLLG

Homology

[Close]

BLAST of ClCG11G008540 vs. TrEMBL
Match: M5XT02_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011823mg PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-22
Identity = 65/116 (56.03%), Postives = 77/116 (66.38%), Query Frame = 1


Query: 1   MLAAASSWLHSSRSRSRSRFLFLLVCSPLFIPIFCATFPFIFAIDLCIRLARHRRRIYLH 60
           MLAAASS     R+R RSR+LFLL+CSP+ IP  CATFPF+ A +LC+RL R RR    H
Sbjct: 65  MLAAASSSTTWLRAR-RSRYLFLLICSPILIPFLCATFPFLCAAELCLRLCRRRRIKNAH 124

Query: 61  DSPE--IERLQECEEGGCRPPLPEQIGGDSGEEIGLLQRYLDDQLLLVRSVYECAD 115
            + E   ERL+ CEEG           G   EE+GLLQRYL+DQLLLV SVY+C D
Sbjct: 125 GADEEVEERLRRCEEG----------RGGEREEMGLLQRYLEDQLLLVGSVYDCGD 169

[Close]

BLAST of ClCG11G008540 vs. TrEMBL
Match: E6NUE3_JATCU (JHL25P11.1 protein OS=Jatropha curcas GN=JHL25P11.1 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 61/138 (44.20%), Postives = 86/138 (62.32%), Query Frame = 1


Query: 1   MLAAASSWLHSSRSRSRSRFLFLLVCSPLFIPIFCATFPFIFAIDLCIRLARHRRRIYLH 60
           ++ A++SWL + RSR     LFL++CSP+ +P  CA FP + A++LCIR+ R  +R+   
Sbjct: 52  IMVASASWLRTRRSRC----LFLILCSPILLPFLCAIFPLLCAVELCIRICRRGQRMKEG 111

Query: 61  DSPEIERLQECEEGGCRPPLPEQIGGDSGEEIGLLQRYLDDQLLLVRSVYECADCSDHLN 120
           +  E ERL+ CEEG C     +++ G+ G+E+GLLQRYL+DQLLLV S+YEC D     N
Sbjct: 112 EDEE-ERLRRCEEGYCNC---DRLVGE-GKEVGLLQRYLEDQLLLVGSMYECGDEFYSQN 171

Query: 121 GDPPFCNIKNSNLTPLLG 139
                        TPLLG
Sbjct: 172 EQDYNTTESQDFNTPLLG 180

[Close]

BLAST of ClCG11G008540 vs. TrEMBL
Match: A0A067JX21_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20265 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 61/138 (44.20%), Postives = 86/138 (62.32%), Query Frame = 1


Query: 1   MLAAASSWLHSSRSRSRSRFLFLLVCSPLFIPIFCATFPFIFAIDLCIRLARHRRRIYLH 60
           ++ A++SWL + RSR     LFL++CSP+ +P  CA FP + A++LCIR+ R  +R+   
Sbjct: 55  IMVASASWLRTRRSRC----LFLILCSPILLPFLCAIFPLLCAVELCIRICRRGQRMKEG 114

Query: 61  DSPEIERLQECEEGGCRPPLPEQIGGDSGEEIGLLQRYLDDQLLLVRSVYECADCSDHLN 120
           +  E ERL+ CEEG C     +++ G+ G+E+GLLQRYL+DQLLLV S+YEC D     N
Sbjct: 115 EDEE-ERLRRCEEGYCNC---DRLVGE-GKEVGLLQRYLEDQLLLVGSMYECGDEFYSQN 174

Query: 121 GDPPFCNIKNSNLTPLLG 139
                        TPLLG
Sbjct: 175 EQDYNTTESQDFNTPLLG 183

[Close]

BLAST of ClCG11G008540 vs. TrEMBL
Match: A0A067GZ88_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030896mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-20
Identity = 63/129 (48.84%), Postives = 84/129 (65.12%), Query Frame = 1


Query: 1   MLAAAS-SWLHSSRSRSRSRFLFLLVCSPLFIPIFCATFPFIFAIDLCIRLARHRRRIYL 60
           MLA A+ SWL S RSR    ++FLL CSP+ +P+  A FPF+ A+++CIR+ R R+R   
Sbjct: 51  MLALATGSWLRSRRSR----WVFLLFCSPILLPLLFACFPFLCAVEVCIRICRRRQR--- 110

Query: 61  HDSPEIERLQECEEGGCRPPLPEQIGGDSGEEIGLLQRYLDDQLLLVRSVYECADCSDHL 120
             S E E L+ CEEG C     +Q   D G E+GLLQRYL+DQL+LV SVY+CAD  D+ 
Sbjct: 111 -KSVEDESLRRCEEGCC--GCGQQ---DDGREVGLLQRYLEDQLMLVGSVYDCAD-DDYH 165

Query: 121 NGDPPFCNI 129
           + D   C +
Sbjct: 171 HQDQDDCRV 165

[Close]

BLAST of ClCG11G008540 vs. TrEMBL
Match: V4T8T1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002690mg PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-19
Identity = 63/129 (48.84%), Postives = 83/129 (64.34%), Query Frame = 1


Query: 1   MLAAAS-SWLHSSRSRSRSRFLFLLVCSPLFIPIFCATFPFIFAIDLCIRLARHRRRIYL 60
           MLA A+ SWL S RSR    ++FLL CSP+ +P+  A FPF+ A+++CIR+ R R+R   
Sbjct: 51  MLALATGSWLRSRRSR----WVFLLFCSPILLPLLFACFPFLCAVEVCIRICRRRQR--- 110

Query: 61  HDSPEIERLQECEEGGCRPPLPEQIGGDSGEEIGLLQRYLDDQLLLVRSVYECADCSDHL 120
             S E E L+ CEEG C     EQ   D G E+GLLQRYL+DQL+LV SVY+CA   D+ 
Sbjct: 111 -KSVEDESLRRCEEGCCG---CEQ--QDDGREVGLLQRYLEDQLMLVGSVYDCA-ADDYH 165

Query: 121 NGDPPFCNI 129
           + D   C +
Sbjct: 171 HQDQDDCRV 165

[Close]

BLAST of ClCG11G008540 vs. TAIR10
Match: AT1G35430.1 (AT1G35430.1 unknown protein)

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-18
Identity = 51/101 (50.50%), Postives = 64/101 (63.37%), Query Frame = 1


Query: 17  RSRFLFLLVCSPLFIPIFCATFPFIFAIDLCIRLARHRRRIYLHDSPEIE--RLQECEEG 76
           RSRF+F L+CSPL IPI CA+ P + A+++  RL R R   +   + E +  RL+ CEEG
Sbjct: 12  RSRFVFFLLCSPLLIPILCASIPILCAVEIFSRL-RSRHPWFAKSTAEEDDLRLRRCEEG 71

Query: 77  -GCRPPLPEQIGGDSGEEIGLLQRYLDDQLLLVRSVYECAD 115
            GC        G D  EE GLLQRYL+DQL+LVRSVY+C +
Sbjct: 72  CGCG-------GFDEPEEAGLLQRYLEDQLVLVRSVYDCGE 104

[Close]

BLAST of ClCG11G008540 vs. TAIR10
Match: AT4G09170.1 (AT4G09170.1 unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-08
Identity = 40/116 (34.48%), Postives = 58/116 (50.00%), Query Frame = 1


Query: 18  SRFLFLLVCSPLFIPIFCATFPFIFAIDLCIRLARHRRRI--------YLHDSPEIERLQ 77
           SR +FL++CSPL     C + P + A+++  RL     +          L D  +  RL+
Sbjct: 26  SRIIFLILCSPLL----CLSIPLLCAVEIFSRLLSRIVKPPPSSAVSKVLVDDEDNLRLR 85

Query: 78  ECEEGGCRPPLPEQIGGDSGEEIGLLQRYLDDQLLLVRSVYECADCSDHLNGDPPF 126
           +CEEG     + E+   D  EE GLL RYLD+QL L R++++     DH +   PF
Sbjct: 86  QCEEGF---GMKEE---DENEESGLLHRYLDNQLSLARTIFDDDGDRDHDSIRVPF 131

[Close]

BLAST of ClCG11G008540 vs. NCBI nr
Match: gi|596191805|ref|XP_007223504.1| (hypothetical protein PRUPE_ppa011823mg [Prunus persica])

HSP 1 Score: 112.8 bits (281), Expect = 4.6e-22
Identity = 65/116 (56.03%), Postives = 77/116 (66.38%), Query Frame = 1


Query: 1   MLAAASSWLHSSRSRSRSRFLFLLVCSPLFIPIFCATFPFIFAIDLCIRLARHRRRIYLH 60
           MLAAASS     R+R RSR+LFLL+CSP+ IP  CATFPF+ A +LC+RL R RR    H
Sbjct: 65  MLAAASSSTTWLRAR-RSRYLFLLICSPILIPFLCATFPFLCAAELCLRLCRRRRIKNAH 124

Query: 61  DSPE--IERLQECEEGGCRPPLPEQIGGDSGEEIGLLQRYLDDQLLLVRSVYECAD 115
            + E   ERL+ CEEG           G   EE+GLLQRYL+DQLLLV SVY+C D
Sbjct: 125 GADEEVEERLRRCEEG----------RGGEREEMGLLQRYLEDQLLLVGSVYDCGD 169

[Close]

BLAST of ClCG11G008540 vs. NCBI nr
Match: gi|645224231|ref|XP_008219011.1| (PREDICTED: uncharacterized protein LOC103319277 [Prunus mume])

HSP 1 Score: 112.5 bits (280), Expect = 6.1e-22
Identity = 65/116 (56.03%), Postives = 77/116 (66.38%), Query Frame = 1


Query: 1   MLAAASSWLHSSRSRSRSRFLFLLVCSPLFIPIFCATFPFIFAIDLCIRLARHRRRIYLH 60
           MLAAASS     R+R RSR+LFLL+CSP+ IP  CATFPF+ A +LC+RL R RR    H
Sbjct: 65  MLAAASSSSTWLRAR-RSRYLFLLICSPILIPFLCATFPFLCAAELCLRLCRRRRIKTAH 124

Query: 61  DSPE--IERLQECEEGGCRPPLPEQIGGDSGEEIGLLQRYLDDQLLLVRSVYECAD 115
            + E   ERL+ CEEG           G   EE+GLLQRYL+DQLLLV SVY+C D
Sbjct: 125 GADEEVEERLRRCEEG----------RGGEREEMGLLQRYLEDQLLLVGSVYDCGD 169

[Close]

BLAST of ClCG11G008540 vs. NCBI nr
Match: gi|317106760|dbj|BAJ53253.1| (JHL25P11.1 [Jatropha curcas])

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-20
Identity = 61/138 (44.20%), Postives = 86/138 (62.32%), Query Frame = 1


Query: 1   MLAAASSWLHSSRSRSRSRFLFLLVCSPLFIPIFCATFPFIFAIDLCIRLARHRRRIYLH 60
           ++ A++SWL + RSR     LFL++CSP+ +P  CA FP + A++LCIR+ R  +R+   
Sbjct: 52  IMVASASWLRTRRSRC----LFLILCSPILLPFLCAIFPLLCAVELCIRICRRGQRMKEG 111

Query: 61  DSPEIERLQECEEGGCRPPLPEQIGGDSGEEIGLLQRYLDDQLLLVRSVYECADCSDHLN 120
           +  E ERL+ CEEG C     +++ G+ G+E+GLLQRYL+DQLLLV S+YEC D     N
Sbjct: 112 EDEE-ERLRRCEEGYCNC---DRLVGE-GKEVGLLQRYLEDQLLLVGSMYECGDEFYSQN 171

Query: 121 GDPPFCNIKNSNLTPLLG 139
                        TPLLG
Sbjct: 172 EQDYNTTESQDFNTPLLG 180

[Close]

BLAST of ClCG11G008540 vs. NCBI nr
Match: gi|802712028|ref|XP_012084627.1| (PREDICTED: uncharacterized protein LOC105643990 [Jatropha curcas])

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-20
Identity = 61/138 (44.20%), Postives = 86/138 (62.32%), Query Frame = 1


Query: 1   MLAAASSWLHSSRSRSRSRFLFLLVCSPLFIPIFCATFPFIFAIDLCIRLARHRRRIYLH 60
           ++ A++SWL + RSR     LFL++CSP+ +P  CA FP + A++LCIR+ R  +R+   
Sbjct: 8   IMVASASWLRTRRSRC----LFLILCSPILLPFLCAIFPLLCAVELCIRICRRGQRMKEG 67

Query: 61  DSPEIERLQECEEGGCRPPLPEQIGGDSGEEIGLLQRYLDDQLLLVRSVYECADCSDHLN 120
           +  E ERL+ CEEG C     +++ G+ G+E+GLLQRYL+DQLLLV S+YEC D     N
Sbjct: 68  EDEE-ERLRRCEEGYCNC---DRLVGE-GKEVGLLQRYLEDQLLLVGSMYECGDEFYSQN 127

Query: 121 GDPPFCNIKNSNLTPLLG 139
                        TPLLG
Sbjct: 128 EQDYNTTESQDFNTPLLG 136

[Close]

BLAST of ClCG11G008540 vs. NCBI nr
Match: gi|643715069|gb|KDP27333.1| (hypothetical protein JCGZ_20265 [Jatropha curcas])

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-20
Identity = 61/138 (44.20%), Postives = 86/138 (62.32%), Query Frame = 1


Query: 1   MLAAASSWLHSSRSRSRSRFLFLLVCSPLFIPIFCATFPFIFAIDLCIRLARHRRRIYLH 60
           ++ A++SWL + RSR     LFL++CSP+ +P  CA FP + A++LCIR+ R  +R+   
Sbjct: 55  IMVASASWLRTRRSRC----LFLILCSPILLPFLCAIFPLLCAVELCIRICRRGQRMKEG 114

Query: 61  DSPEIERLQECEEGGCRPPLPEQIGGDSGEEIGLLQRYLDDQLLLVRSVYECADCSDHLN 120
           +  E ERL+ CEEG C     +++ G+ G+E+GLLQRYL+DQLLLV S+YEC D     N
Sbjct: 115 EDEE-ERLRRCEEGYCNC---DRLVGE-GKEVGLLQRYLEDQLLLVGSMYECGDEFYSQN 174

Query: 121 GDPPFCNIKNSNLTPLLG 139
                        TPLLG
Sbjct: 175 EQDYNTTESQDFNTPLLG 183

The following BLAST results are available for this feature:

BLAST of ClCG11G008540 vs. TrEMBL


Match Name	E-value	Identity	Description
M5XT02_PRUPE	3.2e-22	56.03	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011823mg PE=4 SV=1	[more]
E6NUE3_JATCU	1.8e-20	44.20	JHL25P11.1 protein OS=Jatropha curcas GN=JHL25P11.1 PE=4 SV=1	[more]
A0A067JX21_JATCU	1.8e-20	44.20	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20265 PE=4 SV=1	[more]
A0A067GZ88_CITSI	3.0e-20	48.84	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030896mg PE=4 SV=1	[more]
V4T8T1_9ROSI	1.2e-19	48.84	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002690mg PE=4 SV=1	[more]

BLAST of ClCG11G008540 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G35430.1	1.9e-18	50.50	unknown protein	[more]
AT4G09170.1	3.1e-08	34.48	unknown protein	[more]

BLAST of ClCG11G008540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|596191805\|ref\|XP_007223504.1\|	4.6e-22	56.03	hypothetical protein PRUPE_ppa011823mg [Prunus persica]	[more]
gi\|645224231\|ref\|XP_008219011.1\|	6.1e-22	56.03	PREDICTED: uncharacterized protein LOC103319277 [Prunus mume]	[more]
gi\|317106760\|dbj\|BAJ53253.1\|	2.5e-20	44.20	JHL25P11.1 [Jatropha curcas]	[more]
gi\|802712028\|ref\|XP_012084627.1\|	2.5e-20	44.20	PREDICTED: uncharacterized protein LOC105643990 [Jatropha curcas]	[more]
gi\|643715069\|gb\|KDP27333.1\|	2.5e-20	44.20	hypothetical protein JCGZ_20265 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG11G008540.1	ClCG11G008540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36322	FAMILY NOT NAMED	coord: 11..138 score: 8.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG11G008540	Cla011950	Watermelon (97103) v1	wcgwmB104
ClCG11G008540	Cla97C11G215030	Watermelon (97103) v2	wcgwmbB067
ClCG11G008540	CmoCh04G031600	Cucurbita moschata (Rifu)	cmowcgB622
ClCG11G008540	Carg06111	Silver-seed gourd	carwcgB0020

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG11G008540	Cucumber (Gy14) v1	cgywcgB097
ClCG11G008540	Wild cucumber (PI 183967)	cpiwcgB103
ClCG11G008540	Wild cucumber (PI 183967)	cpiwcgB112
ClCG11G008540	Cucumber (Chinese Long) v2	cuwcgB097
ClCG11G008540	Melon (DHL92) v3.5.1	mewcgB269
ClCG11G008540	Cucurbita pepo (Zucchini)	cpewcgB160
ClCG11G008540	Cucurbita pepo (Zucchini)	cpewcgB356
ClCG11G008540	Cucurbita pepo (Zucchini)	cpewcgB367
ClCG11G008540	Bottle gourd (USVL1VR-Ls)	lsiwcgB079
ClCG11G008540	Cucumber (Gy14) v2	cgybwcgB095
ClCG11G008540	Cucumber (Gy14) v2	cgybwcgB104
ClCG11G008540	Melon (DHL92) v3.6.1	medwcgB260
ClCG11G008540	Cucumber (Chinese Long) v3	cucwcgB113
ClCG11G008540	Wax gourd	wcgwgoB159