CmoCh04G031390 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G031390
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 21745370 .. 21749801 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCAAATTGATCTTATCGGAGAGTAGCGCGCGCCTCATGCCTCTCTTTCTTGGCTTCCGCTCTGCGTTTTCAGTCACATTTACCGCTTGATGTGTCTCGGCACTGAACATAAACTTGAACTAAATTACAGGTTACAGCTTCTTGCTCCGTGAACTATCGAGGATGGAAGAGTATTTGCAGTACTCGAAGATCTTGCGCTTACAAATGAATGGTACGTACCGACTCCTCCATCTCCAGAGGACTAGATCCAAGTTTTAACTTACAGAAATATATTTTTTCGTGTTCCTGTGGGTTAGTAACACTAATTTGGATTGATTCTGTATCAAACTTTACTCAGACGGGGAGGATCAAGCTTTGAAGAACTCTGTCGAAGAGCATATGTACTTTCTTACTACTCAAACCGTGGGGATTTCACTTCTGGTCAAGTCTCTACTTATAGTCTTCTAGTTCCTTATTTCTGCATCCGAACGTTTTTCCTTGTGCATTTAGTAAAATATTGAGAAGAGGTTAGGAGCCAAAAGTATTGAGAAGAGGTTATTGAACTATGCAATTTGGAATTTCTGGTTCTGTCGGTGGTGCGTGATGTGTTAACAGTGGTATGAACCATGATAGTACTTGTTATACCAAAGTTGCTGAGGACATCAGTCCAATTTCAATATTCTGAATCCGTTATTCCTGTTCTGAAATCTAGTCTATTAAGCAACCTTTGTTATAGGATTGGGTAAATGCTAACATGATTCACATAGAAGTAGGATTCCGCCTCTCAACTACTTCTCTTATCATATTAGTAATTATGGTTTATTTCAGCGGCCGTTTCTTTGCACTCATGAGATTACATGGTTATCCATAGACTGCTCCAACAGCTGTAACTGCTAGATTTTGTACATGGATTTGAAGGGATTTAGTAAACAAGCATTCAAGTGATTCTTACCGTGACTTTAATCCAATATCTGTATATAGAAACTAGATATTTAGAGTATGCGTAGCTTAAATTCTACAGCTCATATATGAAAGTTTTTTCCTATTCAGGTTCTAAGTAGAAGGTTTCTGGATTTCAAATGTCATCATGGAAGTCCATTAGAAATTTTATGCTCAAGTTTCATCTTATGTTGCGCTCTTAATGGCATTGCTCTTAATGGCATTCTTATGGCATATACTTAGTTTGGCTCTAGATAATCGTTTCAATAATATTTTTCATTGATCACGATCTTTTCACTTTTATCATCGTTTAGGTACTTAGTCCGTATTGTATTTGCTTTGAATGGGAATCAACCAAACAATCTTGAGAGATAAATATTAGGGCCTCGATCTTGTCAATAAAACCACCCCTTAGTAAATCATCACTCTAATTGTTGGAGCGAAGATAGTCGAAGTGTTCATTTTTTATGCTTAGTCCTCAATCACCAAACAAGTAATTTGGAGCTAAAAGATTGTGCTTGGGCCTGTCAATTTATTTATAACAAGATGAGGCCGAAAATGTTTTGATCGTTAAACCATTTTTCCATTGTCTCTTCTGCAGATTGATCATTCCCTTACTTACTGTTACTCCAAAATAAATGATTAGAATTTATTTCAGGGTAAACTTGAAACGGCTAAGCGAGCCAGTGAAACGGAAGCATCAGCTGATACGGTTGGAGGCAGTTCTTGACCAACTATCCCCCTATTCTCTACAATATGTATAATGGTTTTCATCAAAATAGTTTTGCTTATAAGTAGTTTTGCAGTTCAGATTGAGAATGGATGATCGAGTAAGGCTCATGAGATATATGCAGTCCTATGCCACAAATTCCATTTTTTCGAGTCAGTACAATAAAGCATATTTTGATTCTTACATTGGTAGTTGATTTCACACTAAAGGAGCAGCACCTTGAACTCTATACACCTAAATGTTCCGTTATGTCATCCTTGTTCCCACCTTCCGACTTAGCAAGCCTTGTCACTGTCGAACTGACATTCTCTGCTGCCCATCTGTAGTCGATGTGTGATTCATAATCTGTATCTGCTGCTGTATCTTGCCATGGATAATACAGCTCACTTCCACTATTGCACACCAACGTATCAAATTCTTGTAAGCCTAGTTGACAGCCTTTCAGAGCCTATTGAATGGTGCAGCTAAGGGAACCGTGGATCCAGGCATATTAGGGGAAGGTATTTGCTTGAAATTCCTACCTTCAAAGTACCTACTGGCATATTTGCATCAGTACTCGCATATTTGCCAGAATTGAACTGCATATCTAAGACTCACCCGCTTCTTCTTGCGAGTCAGGGAGCCAGATGCCAAATCCGCCGCACATGTTCTCTCCACTCTATTACTGCGTTCACGTTTATTCCTAGTTGCAATCACCGGTAAGTATAGTTATCTTATCAGTTTTATTTTGCCGTAAAAATAGTCTGCTTCCATTTTCATCTCTCTCTAATTTCATTTGATACAAAATACCAAAGCTGTCAAGTGAAATTATGCACATCAACCTTTCTTCTTCTCTTTCGACCCTTCCATCTTTTTATTTTAATACAATGTTGTAAGAGGGATCATCTTGACAGGGTTATAGTAAATATGTATGGGGAATATATTAACTGCTTTAGTTTATCATAGTTTTGGAAGCAATGATGATTTAGTTTAAAATCCTGCAATATTAACGATCTCATTATTAATATTGAACTTTGGTGATAGATTAAATGAGTAATAAGCTTTTGGGCAGTGATTTAACAGGAAGGATACATTTTGACGTTTTTGCAGTGTTCTGCTTAGGAAGTTTCATCATTCACCCAAGGGAGTGTAGAAATCTGGAAGCAAAAGGATTTTCGTCTCATCAGGTACAAATCTCAACTTCCGATCTTGCATGATTAAATTCCTATCTGTTCTAGCAATTAACTGAGAGCAAATAAAAAGGTTACATATACTTCATCAAAAAGTGGCCAAAAAGAGGCAAGTAAGAGTGGGGGACGAAAAAAATATTGGTGCACAAGTTCATGTTAATTAAATTTTATGGAAATAAATAACAATATGTAATTAGAAAACAGAAATATTAAGAATGTAACCTTGTCAAGGTAGTAGTAATTTGTTGAGAGTGGGATTTGAACCCACGCCCTTTTGGACTAGAACCTTAATCTAGCGCCTTAGACCAACTCGGCCATCTTTAATTTTTTTGGTAAGCCCGACAGTCCTGTTAGATTATATATCTTTTAATAAAAACACATTTTATTTATTTACATTTATACTATCTATCATCTAAAATAACATAAAAGATGATTCCATATTGATTAAAAACTTTTCACTTTTTCTCCATCTCCACATCTAATAATGTTCCTTGGAGAGAGGGTTCAAGTTAAGCCATATGATTGCCTTTCATTATTGGTATCATAGAATTGTGTCATATTTCGACATTTTTTTTTCTTTTTTGCAAAACATTTCACTTTTCATTCATTTTCACATTTTCATCTCATGCCTTTCAAAGAGAGAGTTTAGCTCAAGCTATATGATTGCCTTTAATTACTCTTTTAAAGTATCAAATGTCCAAAAAATAATAATACATAAAGCCAAAATAGTCTTCTTGTGCAACACTTTAATGCAGTCTTTTTATAAAATAAAATTAAAAATAGTGTTATATTGTATTGTATTAGAAATAGGGTAAAAAGAGGGCACTCCCTATTTGTCTTGTTCCAAAAAGAGAGGTATTAGGAAGGAAAAGATATAGGAAAAGAAAGGTAGGAGTTTAAGAAATTATAAGTAAATTGGCCAGACTAAATCCGTTATATATATATATATATATATATATATATCGTTTATTATAGAAAGAGATTATATGTGTGCTATCTCTCTCTTGTTCAAATATTAAAATTAACTTTCACCATCTACTTAGTATTATATTTACAGATTTTTTTGTGCAAGATATTAGAAGATGATGTGAAGCTTGGTTGTTCACAAGGCTTTCTTAAGAGTCCATTTTAGAACAAAAACCTATTTGTACAAGATTTTAGGTGAAAACAAAATTATAAGGATGAAAAAAAAAAAGGTTATAGTTAGAAATTACAATTGGATGACTATTAGACACTAGTTGAGTTCTTTAACTTGACAATCATGATTTTTCCATTTTTATTAATACTATTCTATAAATTTTAACCAAAAATATGATTCCATAAAGATTATACTAGAAATCAAAATTTTAAAGATAGAAAAAGAATGCTTTGAGCGCATTATCCATTGAATTTTTCATCTTTGATTTCTATCCTGTTTATGTATGTTGATAGTCGTGTTTTATCTGAGTATTATAATCCCAAAATATTGGTAGGCATCACACAATTTATAATTCTTCTAATCATGTTTCGTGACTACAATATTGTTTCACAAACTACCACACATCCATTTTGTTGGCCTTCCTGAAAGTACTACAGACTTCGTTCCCTGAAATTTGCACGCCACTTGTATGAAAC

mRNA sequence

CTCCAAATTGATCTTATCGGAGAGTAGCGCGCGCCTCATGCCTCTCTTTCTTGGCTTCCGCTCTGCGTTTTCAGTCACATTTACCGCTTGATGTGTCTCGGCACTGAACATAAACTTGAACTAAATTACAGGTTACAGCTTCTTGCTCCGTGAACTATCGAGGATGGAAGAGTATTTGCAGTACTCGAAGATCTTGCGCTTACAAATGAATGACGGGGAGGATCAAGCTTTGAAGAACTCTGTCGAAGAGCATATGTACTTTCTTACTACTCAAACCGTGGGGATTTCACTTCTGGGTAAACTTGAAACGGCTAAGCGAGCCAGTGAAACGGAAGCATCAGCTGATACGTTCAGATTGAGAATGGATGATCGAGTAAGGCTCATGAGATATATGCAGTCCTATGCCACAAATTCCATTTTTTCGAGTCAGTACAATAAAGCATATTTTGATTCTTACATTGGGAACCGTGGATCCAGGCATATTAGGGGAAGGGAGCCAGATGCCAAATCCGCCGCACATGTTCTCTCCACTCTATTACTGCGTTCACGTTTATTCCTAGTTGCAATCACCGTGTTCTGCTTAGGAAGTTTCATCATTCACCCAAGGGAGTGTAGAAATCTGGAAGCAAAAGGATTTTCGTCTCATCAGGTACAAATCTCAACTTCCGATCTTGCATGATTAAATTCCTATCTGTTCTAGCAATTAACTGAGAGCAAATAAAAAGGTTACATATACTTCATCAAAAAGTGGCCAAAAAGAGGCAAGTAAGAGTGGGGGACGAAAAAAATATTGGTGCACAAGTTCATGTTAATTAAATTTTATGGAAATAAATAACAATATGTAATTAGAAAACAGAAATATTAAGAATGTAACCTTGTCAAGGTAGTAGTAATTTGTTGAGAGTGGGATTTGAACCCACGCCCTTTTGGACTAGAACCTTAATCTAGCGCCTTAGACCAACTCGGCCATCTTTAATTTTTTTGGTAAGCCCGACAGTCCTGTTAGATTATATATCTTTTAATAAAAACACATTTTATTTATTTACATTTATACTATCTATCATCTAAAATAACATAAAAGATGATTCCATATTGATTAAAAACTTTTCACTTTTTCTCCATCTCCACATCTAATAATGTTCCTTGGAGAGAGGGTTCAAGTTAAGCCATATGATTGCCTTTCATTATTGGTATCATAGAATTGTGTCATATTTCGACATTTTTTTTTCTTTTTTGCAAAACATTTCACTTTTCATTCATTTTCACATTTTCATCTCATGCCTTTCAAAGAGAGAGTTTAGCTCAAGCTATATGATTGCCTTTAATTACTCTTTTAAAGTATCAAATGTCCAAAAAATAATAATACATAAAGCCAAAATAGTCTTCTTGTGCAACACTTTAATGCAGTCTTTTTATAAAATAAAATTAAAAATAGTGTTATATTGTATTGTATTAGAAATAGGGTAAAAAGAGGGCACTCCCTATTTGTCTTGTTCCAAAAAGAGAGGTATTAGGAAGGAAAAGATATAGGAAAAGAAAGGTAGGAGTTTAAGAAATTATAAGTAAATTGGCCAGACTAAATCCGTTATATATATATATATATATATATATATATCGTTTATTATAGAAAGAGATTATATGTGTGCTATCTCTCTCTTGTTCAAATATTAAAATTAACTTTCACCATCTACTTAGTATTATATTTACAGATTTTTTTGTGCAAGATATTAGAAGATGATGTGAAGCTTGGTTGTTCACAAGGCTTTCTTAAGAGTCCATTTTAGAACAAAAACCTATTTGTACAAGATTTTAGGTGAAAACAAAATTATAAGGATGAAAAAAAAAAAGGTTATAGTTAGAAATTACAATTGGATGACTATTAGACACTAGTTGAGTTCTTTAACTTGACAATCATGATTTTTCCATTTTTATTAATACTATTCTATAAATTTTAACCAAAAATATGATTCCATAAAGATTATACTAGAAATCAAAATTTTAAAGATAGAAAAAGAATGCTTTGAGCGCATTATCCATTGAATTTTTCATCTTTGATTTCTATCCTGTTTATGTATGTTGATAGTCGTGTTTTATCTGAGTATTATAATCCCAAAATATTGGTAGGCATCACACAATTTATAATTCTTCTAATCATGTTTCGTGACTACAATATTGTTTCACAAACTACCACACATCCATTTTGTTGGCCTTCCTGAAAGTACTACAGACTTCGTTCCCTGAAATTTGCACGCCACTTGTATGAAAC

Coding sequence (CDS)

ATGGAAGAGTATTTGCAGTACTCGAAGATCTTGCGCTTACAAATGAATGACGGGGAGGATCAAGCTTTGAAGAACTCTGTCGAAGAGCATATGTACTTTCTTACTACTCAAACCGTGGGGATTTCACTTCTGGGTAAACTTGAAACGGCTAAGCGAGCCAGTGAAACGGAAGCATCAGCTGATACGTTCAGATTGAGAATGGATGATCGAGTAAGGCTCATGAGATATATGCAGTCCTATGCCACAAATTCCATTTTTTCGAGTCAGTACAATAAAGCATATTTTGATTCTTACATTGGGAACCGTGGATCCAGGCATATTAGGGGAAGGGAGCCAGATGCCAAATCCGCCGCACATGTTCTCTCCACTCTATTACTGCGTTCACGTTTATTCCTAGTTGCAATCACCGTGTTCTGCTTAGGAAGTTTCATCATTCACCCAAGGGAGTGTAGAAATCTGGAAGCAAAAGGATTTTCGTCTCATCAGGTACAAATCTCAACTTCCGATCTTGCATGA

Homology

[Close]

BLAST of CmoCh04G031390 vs. TAIR10
Match: AT1G33500.1 (AT1G33500.1 unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 4.7e-06
Identity = 29/55 (52.73%), Postives = 30/55 (54.55%), Query Frame = 1


Query: 1  MEEYLQYSKILRLQMNDGEDQALKNSVEEHMYFLTTQTVGISLLGKLETAKRASE 56
          MEEYLQY K LR QM D ED A K SVEE M   T  T+   L   L   KR  E
Sbjct: 1  MEEYLQYMKTLRSQMTDVEDHAAKVSVEEQMQVTTISTLEKDLEHALSETKRLKE 55

[Close]

BLAST of CmoCh04G031390 vs. NCBI nr
Match: gi|659081178|ref|XP_008441194.1| (PREDICTED: centromere-associated protein E isoform X2 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 7.6e-06
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 1


Query: 1  MEEYLQYSKILRLQMNDGEDQALKNSVEEHMYFLTTQTVGISLLGKLETAKRASE 56
          MEEYLQY K LR QMND EDQA+K SV+EHM+F T QT+   L       K+ +E
Sbjct: 1  MEEYLQYMKTLRFQMNDVEDQAMKISVQEHMHFATIQTMENDLNSAKSELKQLNE 55

[Close]

BLAST of CmoCh04G031390 vs. NCBI nr
Match: gi|659081180|ref|XP_008441195.1| (PREDICTED: protein hook isoform X3 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 7.6e-06
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 1


Query: 1  MEEYLQYSKILRLQMNDGEDQALKNSVEEHMYFLTTQTVGISLLGKLETAKRASE 56
          MEEYLQY K LR QMND EDQA+K SV+EHM+F T QT+   L       K+ +E
Sbjct: 1  MEEYLQYMKTLRFQMNDVEDQAMKISVQEHMHFATIQTMENDLNSAKSELKQLNE 55

[Close]

BLAST of CmoCh04G031390 vs. NCBI nr
Match: gi|659081176|ref|XP_008441193.1| (PREDICTED: myosin heavy chain, clone 203 isoform X1 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 7.6e-06
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 1


Query: 1  MEEYLQYSKILRLQMNDGEDQALKNSVEEHMYFLTTQTVGISLLGKLETAKRASE 56
          MEEYLQY K LR QMND EDQA+K SV+EHM+F T QT+   L       K+ +E
Sbjct: 1  MEEYLQYMKTLRFQMNDVEDQAMKISVQEHMHFATIQTMENDLNSAKSELKQLNE 55

[Close]

BLAST of CmoCh04G031390 vs. NCBI nr
Match: gi|778672907|ref|XP_011649890.1| (PREDICTED: myosin heavy chain, striated muscle [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 9.9e-06
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1


Query: 1  MEEYLQYSKILRLQMNDGEDQALKNSVEEHMYFLTTQTVGISLLGKLETAKRASE 56
          MEEYLQY K LR QMND EDQA+K S++EHM+F T QT+   L       K+ +E
Sbjct: 1  MEEYLQYMKTLRFQMNDVEDQAMKISIQEHMHFATIQTMENDLNSAKSELKQLNE 55

The following BLAST results are available for this feature:

BLAST of CmoCh04G031390 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G031390 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of CmoCh04G031390 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G33500.1	4.7e-06	52.73	unknown protein	[more]

BLAST of CmoCh04G031390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081178\|ref\|XP_008441194.1\|	7.6e-06	56.36	PREDICTED: centromere-associated protein E isoform X2 [Cucumis melo]	[more]
gi\|659081180\|ref\|XP_008441195.1\|	7.6e-06	56.36	PREDICTED: protein hook isoform X3 [Cucumis melo]	[more]
gi\|659081176\|ref\|XP_008441193.1\|	7.6e-06	56.36	PREDICTED: myosin heavy chain, clone 203 isoform X1 [Cucumis melo]	[more]
gi\|778672907\|ref\|XP_011649890.1\|	9.9e-06	54.55	PREDICTED: myosin heavy chain, striated muscle [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G031390.1	CmoCh04G031390.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G031390	CmaCh04G030180	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G031390	ClCG11G008290	Watermelon (Charleston Gray)	cmowcgB622
CmoCh04G031390	CsaV3_2G033310	Cucumber (Chinese Long) v3	cmocucB0812

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G031390	Wild cucumber (PI 183967)	cmocpiB695
CmoCh04G031390	Cucumber (Chinese Long) v2	cmocuB684
CmoCh04G031390	Melon (DHL92) v3.5.1	cmomeB671
CmoCh04G031390	Watermelon (97103) v1	cmowmB723
CmoCh04G031390	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G031390	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G031390	Bottle gourd (USVL1VR-Ls)	cmolsiB645
CmoCh04G031390	Cucumber (Gy14) v2	cgybcmoB236
CmoCh04G031390	Melon (DHL92) v3.6.1	cmomedB759
CmoCh04G031390	Silver-seed gourd	carcmoB0033
CmoCh04G031390	Silver-seed gourd	carcmoB1454
CmoCh04G031390	Watermelon (97103) v2	cmowmbB708
CmoCh04G031390	Wax gourd	cmowgoB0857
CmoCh04G031390	Cucurbita moschata (Rifu)	cmocmoB261
CmoCh04G031390	Cucumber (Gy14) v1	cgycmoB0166
CmoCh04G031390	Cucurbita maxima (Rimu)	cmacmoB308