CmaCh04G030180 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G030180
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionBnaC05g28250D protein
LocationCma_Chr04 : 19711257 .. 19712873 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATCTTATCGGAGAGTAGCGCGCGCCTCATGCCTCTCTTTCTTGGCTTCCGCTCTGCGTTCAGTCACATTCACCACTTGATGTGTCTCGGCACTGAACAGAAACTTGAACTAAATTACAGGTTACAGCTTCTTGCTCCTTGAACTGTCAAGGATGGAAGAGTATTTGCAGTACACGAAGATCTTGCGCTTACAAATGAACGGTACGTACCGACTCCTCCATCTCCAGAGGACTAAATCCAAGTTTTAACTTACAGAAATATATTTTTTTCGTGTTCCTGTTGGTTAGTAACACTAATTTGGATTGATTCTGTATCAAACTTTACTCAGACGTGGAGGATCAAGCTTTGAAGAACTCTGTCGAAGAGCGTATGTACTTTCTTACTGCTCAAACCATGGAGATTTCACTTCTGGTCAAGTCTCTACTTATAGTCTTCTAGTTCCTTATTTCTGCATCCGAACGTTTTTCCTTAAGCATTTAGTAAAATATTGAGAAGAGGTTAGGAGCCAAAAGTATTGAGAAGAGGTTATTGAACTATGCAATTTGGAATTTCTGGTTCTGTCGGTGGTGCGTGATGTGTTAACAGTGGTATAAACAATGATAGAACTTATACCAATGTTGCTGAGGACATCAGTCCAATTTCAATATTCTGAATCCGTTATTCCTGTTCTGAAATCTAGTCTATTAAGCAACCTTTGTTATAGGATTGGGTAAATGCTAACATGATTCACATAGAAGTAGGATTCCGCCTCTCAACTACTTCGCTTATCAATCAGTAATTATGGTTTATTTCAGCGGCCGTTTATTTGCACTCATGAGATTACATGGTTATCCATAGACTGCTCCAACAGCTGTAACTGCTAGATTTTGTACATGGATTTGAAGGGATTTAGTAAACGAGCATCCAAGTGATTCTTACCGTGACTTTAATCCAATATCTGTATATAGAAACTAGATATTTAGAGTATGCGTAGCTTAAATTCTACAGCTCATATATGAAAGTTTTTTCCTGCTCAGGTTCTAAGTAGAAGATTTCTGGATTTCAAATGTCATCATGGAAGTCCATTAGAAATTTTATGCTCAAGTTTCATCTTATGTTACGCTCTTAATGGCATTCTTATGGCATATACTTAGTTTGGCTCTAGATAATCGTTTCAATAATATTTTTCATTGATCACGATCTTTTCACTTTTAGCATCGTTTAGGTACTTCGTCCGTATTGTATTTGCTTTGAATGGGAATCAATCAAACAATCTTAAGAGATAAATATTAGGGCCTCGATCTTGTCAATAAAACCACCCCTTAGTAAATCATCACTCTAATTGTTGGAGCGAAGATAGTCGAAGTGTTCATTTTTTATGCTTAGTCCTTAATCACCAAACAAGTAATTTGGAGCTAAAAGATTGTGCTTGGGCCTGTCAATTTATTTATAAGAAGATGAGGCCGAAAATGTTTTGATCGTTAAACCATTTTTTCATTGTCTCTTTTGCAGATTGATCATTCCCTTACTGTTACTCCAAAATAAATGATTAGAATTTATTTCAGGTTAAACTTGAAACGGCTAAGCGAGCCAGTGAAACGGAAGCATCAGCTGATACGGTTGGAGGTAGTTCTTGA

mRNA sequence

TGATCTTATCGGAGAGTAGCGCGCGCCTCATGCCTCTCTTTCTTGGCTTCCGCTCTGCGTTCAGTCACATTCACCACTTGATGTGTCTCGGCACTGAACAGAAACTTGAACTAAATTACAGGTTACAGCTTCTTGCTCCTTGAACTGTCAAGGATGGAAGAGTATTTGCAGTACACGAAGATCTTGCGCTTACAAATGAACGACGTGGAGGATCAAGCTTTGAAGAACTCTGTCGAAGAGCGTATGTACTTTCTTACTGCTCAAACCATGGAGATTTCACTTCTGGTTAAACTTGAAACGGCTAAGCGAGCCAGTGAAACGGAAGCATCAGCTGATACGGTTGGAGGTAGTTCTTGA

Coding sequence (CDS)

ATGGAAGAGTATTTGCAGTACACGAAGATCTTGCGCTTACAAATGAACGACGTGGAGGATCAAGCTTTGAAGAACTCTGTCGAAGAGCGTATGTACTTTCTTACTGCTCAAACCATGGAGATTTCACTTCTGGTTAAACTTGAAACGGCTAAGCGAGCCAGTGAAACGGAAGCATCAGCTGATACGGTTGGAGGTAGTTCTTGA

Protein sequence

MEEYLQYTKILRLQMNDVEDQALKNSVEERMYFLTAQTMEISLLVKLETAKRASETEASADTVGGSS
Homology
[Close]
BLAST of CmaCh04G030180 vs. TAIR10
Match: AT1G33500.1 (AT1G33500.1 unknown protein)

HSP 1 Score: 51.6 bits (122), Expect = 2.2e-07
Identity = 31/55 (56.36%), Postives = 33/55 (60.00%), Query Frame = 1 

Query: 1  MEEYLQYTKILRLQMNDVEDQALKNSVEERMYFLTAQTMEISLLVKLETAKRASE 56
          MEEYLQY K LR QM DVED A K SVEE+M   T  T+E  L   L   KR  E
Sbjct: 1  MEEYLQYMKTLRSQMTDVEDHAAKVSVEEQMQVTTISTLEKDLEHALSETKRLKE 55

[Close]
BLAST of CmaCh04G030180 vs. NCBI nr
Match: gi|659081180|ref|XP_008441195.1| (PREDICTED: protein hook isoform X3 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-07
Identity = 47/113 (41.59%), Postives = 52/113 (46.02%), Query Frame = 1 

Query: 1   MEEYLQYTKILRLQMNDVEDQALKNSVEERMYFLTAQTMEISL----------------- 60
           MEEYLQY K LR QMNDVEDQA+K SV+E M+F T QTME  L                 
Sbjct: 1   MEEYLQYMKTLRFQMNDVEDQAMKISVQEHMHFATIQTMENDLNSAKSELKQLNEDAERM 60

Query: 61  -----------------------------LVKLETAKRASETEASADTVGGSS 68
                                         VKLE AK+ASETE  +D VGG S
Sbjct: 61  MQAKGEICSQILEKQRKIASLESDVSTLSQVKLENAKQASETEGFSDAVGGIS 113

[Close]
BLAST of CmaCh04G030180 vs. NCBI nr
Match: gi|659081176|ref|XP_008441193.1| (PREDICTED: myosin heavy chain, clone 203 isoform X1 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 1 

Query: 1  MEEYLQYTKILRLQMNDVEDQALKNSVEERMYFLTAQTMEISLLVKLETAKRASE 56
          MEEYLQY K LR QMNDVEDQA+K SV+E M+F T QTME  L       K+ +E
Sbjct: 1  MEEYLQYMKTLRFQMNDVEDQAMKISVQEHMHFATIQTMENDLNSAKSELKQLNE 55

[Close]
BLAST of CmaCh04G030180 vs. NCBI nr
Match: gi|659081178|ref|XP_008441194.1| (PREDICTED: centromere-associated protein E isoform X2 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-06
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 1 

Query: 1  MEEYLQYTKILRLQMNDVEDQALKNSVEERMYFLTAQTMEISLLVKLETAKRASE 56
          MEEYLQY K LR QMNDVEDQA+K SV+E M+F T QTME  L       K+ +E
Sbjct: 1  MEEYLQYMKTLRFQMNDVEDQAMKISVQEHMHFATIQTMENDLNSAKSELKQLNE 55

[Close]
BLAST of CmaCh04G030180 vs. NCBI nr
Match: gi|778672907|ref|XP_011649890.1| (PREDICTED: myosin heavy chain, striated muscle [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-06
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 1 

Query: 1  MEEYLQYTKILRLQMNDVEDQALKNSVEERMYFLTAQTMEISLLVKLETAKRASE 56
          MEEYLQY K LR QMNDVEDQA+K S++E M+F T QTME  L       K+ +E
Sbjct: 1  MEEYLQYMKTLRFQMNDVEDQAMKISIQEHMHFATIQTMENDLNSAKSELKQLNE 55

The following BLAST results are available for this feature:
BLAST of CmaCh04G030180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G030180 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh04G030180 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G33500.12.2e-0756.36 unknown protein[more]
BLAST of CmaCh04G030180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081180|ref|XP_008441195.1|2.7e-0741.59PREDICTED: protein hook isoform X3 [Cucumis melo][more]
gi|659081176|ref|XP_008441193.1|2.3e-0660.00PREDICTED: myosin heavy chain, clone 203 isoform X1 [Cucumis melo][more]
gi|659081178|ref|XP_008441194.1|2.3e-0660.00PREDICTED: centromere-associated protein E isoform X2 [Cucumis melo][more]
gi|778672907|ref|XP_011649890.1|3.0e-0658.18PREDICTED: myosin heavy chain, striated muscle [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G030180.1CmaCh04G030180.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G030180ClCG11G008290Watermelon (Charleston Gray)cmawcgB620
CmaCh04G030180CmoCh04G031390Cucurbita moschata (Rifu)cmacmoB729
CmaCh04G030180Lsi03G004690Bottle gourd (USVL1VR-Ls)cmalsiB656
CmaCh04G030180Cp4.1LG01g26220Cucurbita pepo (Zucchini)cmacpeB721
CmaCh04G030180MELO3C008102.2Melon (DHL92) v3.6.1cmamedB762
CmaCh04G030180CsaV3_2G033310Cucumber (Chinese Long) v3cmacucB0827
CmaCh04G030180CsGy2G024530Cucumber (Gy14) v2cgybcmaB248
CmaCh04G030180Carg22871Silver-seed gourdcarcmaB1497
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G030180Cucurbita pepo (Zucchini)cmacpeB705
CmaCh04G030180Silver-seed gourdcarcmaB0033
CmaCh04G030180Watermelon (97103) v2cmawmbB736
CmaCh04G030180Wax gourdcmawgoB0860
CmaCh04G030180Cucurbita maxima (Rimu)cmacmaB324
CmaCh04G030180Cucumber (Gy14) v1cgycmaB0171
CmaCh04G030180Cucurbita moschata (Rifu)cmacmoB692
CmaCh04G030180Wild cucumber (PI 183967)cmacpiB702
CmaCh04G030180Cucumber (Chinese Long) v2cmacuB694
CmaCh04G030180Melon (DHL92) v3.5.1cmameB679
CmaCh04G030180Watermelon (97103) v1cmawmB727