CmoCh04G029330 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G029330
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transcription initiation factor TFIID subunit 3
Location	Cmo_Chr04 : 20773647 .. 20774780 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGATGGAGGTGGGGAGAGTGGAAAAGTGCATGAACGACCAAAGACGAGAAAGAATTTGGGCGGTGAAGACTTCCCACAGGCGCTTGCCAAGATTGCTGTAGCTCAAATATGTGAGAGCGAGGGGTTTCAAACCTTTCAGCAGTCTGCCCTTGAAACACTGGCTGACATTGCGGTTCGGTATGTTCAGAATATAGGAAAGACTGCAAACTTCTGTGCTAATTTTGCTGGCAGAACGGAGTGTAATGTGTTCGATGTAATTCAAGCACTGGAAGATTTGGGGTCAGTCCAAGGATTTGCAGGTGCTTTGGATATTGAACGTTGTCTCGCAAGTTCCAGCACAGTCAAAGAGATCGCTCGTTATGTTGCTCAAGCGGAAGAAATACCATTTGCATACGCAGTTCCCAAATTTCCAGTTGTCAAAGAGAGAAAGCTGAGGCCTACTTTTTTGCAAACTGGGGAAGAAACTCCTGGAAAGCATATACCTTCTTGGTTGCCTGCACTTCCTGATCCCGAAACATACATCGCGTCCCCCACTGTGGAGGAAAAAGTAGTGGAGCCTCAAAAAATTAAAACTGAGCCGGAAAAACAATGTAAGAGCGCAGAAAAGTCGTTATGGAATCTGCAGCAGTGGTTGTTTTGCAATGGATTGGAAGGATCCCGGAGAGAAGGCCCTAGAAATGCAGCTATGACCAAACAAACACAAGAAAGTAACCCATTTCTTGCTCCCCCCCTGCAATTTGGTGAGAAGGAAGTTTCTTCTGTCGTTCTTCCAGATAGGATCTTGAACAATTCAAGTACAGAATATCCTGTCCCTGCCAGGGAGAACTGTCTTGTGGATACCCATGTCTCAGTGCTGGAGACTTTTGCTCCAGCTATTGAATCATTGAAGAACAGTTTGCACGATTCTGAGGAAAAGTTCTCTCTGAACAGGCGATCCACTGTACAGTTCAAGATTGGGACTGGAAAGAAGCCTGAAAGTAGCATGATAGAATTGAAGGCGCTAAACAATGGTGTGAAGAACTCTTCATCCTGGTTTGTAGGGGACGATAAGAAGGATGACAAGAAAAGAAAGGCCGAGAAGATTCTGAAGAACTCAATTGAGAACTCCAATGAGCTATATCAGTTGTAA

mRNA sequence

ATGAACGATGGAGGTGGGGAGAGTGGAAAAGTGCATGAACGACCAAAGACGAGAAAGAATTTGGGCGGTGAAGACTTCCCACAGGCGCTTGCCAAGATTGCTGTAGCTCAAATATGTGAGAGCGAGGGGTTTCAAACCTTTCAGCAGTCTGCCCTTGAAACACTGGCTGACATTGCGGTTCGGTATGTTCAGAATATAGGAAAGACTGCAAACTTCTGTGCTAATTTTGCTGGCAGAACGGAGTGTAATGTGTTCGATGTAATTCAAGCACTGGAAGATTTGGGGTCAGTCCAAGGATTTGCAGGTGCTTTGGATATTGAACGTTGTCTCGCAAGTTCCAGCACAGTCAAAGAGATCGCTCGTTATGTTGCTCAAGCGGAAGAAATACCATTTGCATACGCAGTTCCCAAATTTCCAGTTGTCAAAGAGAGAAAGCTGAGGCCTACTTTTTTGCAAACTGGGGAAGAAACTCCTGGAAAGCATATACCTTCTTGGTTGCCTGCACTTCCTGATCCCGAAACATACATCGCGTCCCCCACTGTGGAGGAAAAAGTAGTGGAGCCTCAAAAAATTAAAACTGAGCCGGAAAAACAATGTAAGAGCGCAGAAAAGTCGTTATGGAATCTGCAGCAGTGGTTGTTTTGCAATGGATTGGAAGGATCCCGGAGAGAAGGCCCTAGAAATGCAGCTATGACCAAACAAACACAAGAAAGTAACCCATTTCTTGCTCCCCCCCTGCAATTTGGTGAGAAGGAAGTTTCTTCTGTCGTTCTTCCAGATAGGATCTTGAACAATTCAAGTACAGAATATCCTGTCCCTGCCAGGGAGAACTGTCTTGTGGATACCCATGTCTCAGTGCTGGAGACTTTTGCTCCAGCTATTGAATCATTGAAGAACAGTTTGCACGATTCTGAGGAAAAGTTCTCTCTGAACAGGCGATCCACTGTACAGTTCAAGATTGGGACTGGAAAGAAGCCTGAAAGTAGCATGATAGAATTGAAGGCGCTAAACAATGGTGTGAAGAACTCTTCATCCTGGTTTGTAGGGGACGATAAGAAGGATGACAAGAAAAGAAAGGCCGAGAAGATTCTGAAGAACTCAATTGAGAACTCCAATGAGCTATATCAGTTGTAA

Coding sequence (CDS)

ATGAACGATGGAGGTGGGGAGAGTGGAAAAGTGCATGAACGACCAAAGACGAGAAAGAATTTGGGCGGTGAAGACTTCCCACAGGCGCTTGCCAAGATTGCTGTAGCTCAAATATGTGAGAGCGAGGGGTTTCAAACCTTTCAGCAGTCTGCCCTTGAAACACTGGCTGACATTGCGGTTCGGTATGTTCAGAATATAGGAAAGACTGCAAACTTCTGTGCTAATTTTGCTGGCAGAACGGAGTGTAATGTGTTCGATGTAATTCAAGCACTGGAAGATTTGGGGTCAGTCCAAGGATTTGCAGGTGCTTTGGATATTGAACGTTGTCTCGCAAGTTCCAGCACAGTCAAAGAGATCGCTCGTTATGTTGCTCAAGCGGAAGAAATACCATTTGCATACGCAGTTCCCAAATTTCCAGTTGTCAAAGAGAGAAAGCTGAGGCCTACTTTTTTGCAAACTGGGGAAGAAACTCCTGGAAAGCATATACCTTCTTGGTTGCCTGCACTTCCTGATCCCGAAACATACATCGCGTCCCCCACTGTGGAGGAAAAAGTAGTGGAGCCTCAAAAAATTAAAACTGAGCCGGAAAAACAATGTAAGAGCGCAGAAAAGTCGTTATGGAATCTGCAGCAGTGGTTGTTTTGCAATGGATTGGAAGGATCCCGGAGAGAAGGCCCTAGAAATGCAGCTATGACCAAACAAACACAAGAAAGTAACCCATTTCTTGCTCCCCCCCTGCAATTTGGTGAGAAGGAAGTTTCTTCTGTCGTTCTTCCAGATAGGATCTTGAACAATTCAAGTACAGAATATCCTGTCCCTGCCAGGGAGAACTGTCTTGTGGATACCCATGTCTCAGTGCTGGAGACTTTTGCTCCAGCTATTGAATCATTGAAGAACAGTTTGCACGATTCTGAGGAAAAGTTCTCTCTGAACAGGCGATCCACTGTACAGTTCAAGATTGGGACTGGAAAGAAGCCTGAAAGTAGCATGATAGAATTGAAGGCGCTAAACAATGGTGTGAAGAACTCTTCATCCTGGTTTGTAGGGGACGATAAGAAGGATGACAAGAAAAGAAAGGCCGAGAAGATTCTGAAGAACTCAATTGAGAACTCCAATGAGCTATATCAGTTGTAA

Homology

[Close]

BLAST of CmoCh04G029330 vs. Swiss-Prot
Match: TAF8_ARATH (Transcription initiation factor TFIID subunit 8 OS=Arabidopsis thaliana GN=TAF8 PE=1 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.9e-47
Identity = 123/356 (34.55%), Postives = 186/356 (52.25%), Query Frame = 1


Query: 25  DFPQALAKIAVAQICESEGFQTFQQSALETLADIAVRYVQNIGKTANFCANFAGRTECNV 84
           +F  A AK AVAQ+CES G++ F+  ALE+L+  A++Y+  +GKTA   AN  GR++CNV
Sbjct: 25  EFSHAAAKAAVAQVCESVGYENFKDPALESLSGFALQYILQLGKTATSFANLTGRSQCNV 84

Query: 85  FDVIQALEDLGSVQGFAGALDIERCLASSSTVKEIARYVAQAEEIPFAYAVPKFPVV--- 144
           FD+I AL+DL    G  G       L  S  ++EI  +V  +EE+PF+  +P FPV    
Sbjct: 85  FDIILALDDLTDNNGEQGISSESCSLGRSIKLREIIDFVNSSEEVPFSQPLPSFPVAISD 144

Query: 145 KERKLRPTFLQTGEETPGKHIPSWLPALPDPETYIASPTVEEKVVEPQKIKTEPEKQCKS 204
           + RK+ P+F++ GE  PGKHIP WLPA PDP TY  +P   E+V +P+  K E  +Q + 
Sbjct: 145 RSRKMIPSFVEIGETPPGKHIPLWLPAFPDPHTYKETPMWIERVSDPRGDKIEQARQRRK 204

Query: 205 AEKSLWNLQQWLFCNGLEGSRREGPRNAAMTKQTQESNPFLAPPLQFGEKEVSSVVLPDR 264
           AE++L +LQ+ L C     +   G  +    +   +            E E+ SV   ++
Sbjct: 205 AERALLSLQRKLVCKISSRNPVWGDMDGVKEEMRDD------------ESELRSVSSGEK 264

Query: 265 ILNNSSTEYPVPARENCLVDTHVSVLETFAPAIESLKNSLHDSEEKFSLNRRSTVQFKIG 324
           +                L    +SV+E FAPA+E+ ++             +     K+ 
Sbjct: 265 V--------------ESLNRDGLSVIEAFAPAMEAARDGFSSEAHTEWKKNKPVALSKLR 324

Query: 325 TGKKPESSMIELKALNNGVKNSSSWFVGDDKKDDKKRKAEKILKNSIENSNELYQL 378
           T KK     ++L     G     S FV ++ +DDK+R+AE IL+  +EN  +L QL
Sbjct: 325 TEKKFLGQPLDLSLQMKGEDRPIS-FVREEDRDDKRRRAEFILRQCMENPVDLNQL 353

[Close]

BLAST of CmoCh04G029330 vs. Swiss-Prot
Match: TAF8_BOVIN (Transcription initiation factor TFIID subunit 8 OS=Bos taurus GN=TAF8 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-10
Identity = 43/176 (24.43%), Postives = 81/176 (46.02%), Query Frame = 1


Query: 32  KIAVAQICESEGFQTFQQSALETLADIAVRYVQNIGKTANFCANFAGRTECNVFDVIQAL 91
           ++ V+ +    GF++ +++++ETL ++   Y+  IG++A        RT+  + D++  L
Sbjct: 38  QVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTL 97

Query: 92  EDLGSVQGFAGALDIERCLASSSTVKEIARYVAQAEEIPFAYAVPKFPVVKERKLRPTFL 151
            ++G                    V  +  Y  +++ +     V   P V  + + P  L
Sbjct: 98  VEMGF------------------NVDTLPAYAKRSQRM-----VITAPPVTNQPVTPKAL 157

Query: 152 QTGEETPGK-HIPSWLPALPDPETYIASPTVEEKVVEPQKIKTEPEKQCKSAEKSL 207
             G+  P   HIPS  P  PDP TYI +PT  E V + Q ++ +   Q +  E++L
Sbjct: 158 TAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERAL 190

[Close]

BLAST of CmoCh04G029330 vs. Swiss-Prot
Match: TAF8_HUMAN (Transcription initiation factor TFIID subunit 8 OS=Homo sapiens GN=TAF8 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-10
Identity = 43/176 (24.43%), Postives = 81/176 (46.02%), Query Frame = 1


Query: 32  KIAVAQICESEGFQTFQQSALETLADIAVRYVQNIGKTANFCANFAGRTECNVFDVIQAL 91
           ++ V+ +    GF++ +++++ETL ++   Y+  IG++A        RT+  + D++  L
Sbjct: 38  QVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTL 97

Query: 92  EDLGSVQGFAGALDIERCLASSSTVKEIARYVAQAEEIPFAYAVPKFPVVKERKLRPTFL 151
            ++G                    V  +  Y  +++ +     V   P V  + + P  L
Sbjct: 98  VEMGF------------------NVDTLPAYAKRSQRM-----VITAPPVTNQPVTPKAL 157

Query: 152 QTGEETPGK-HIPSWLPALPDPETYIASPTVEEKVVEPQKIKTEPEKQCKSAEKSL 207
             G+  P   HIPS  P  PDP TYI +PT  E V + Q ++ +   Q +  E++L
Sbjct: 158 TAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERAL 190

[Close]

BLAST of CmoCh04G029330 vs. Swiss-Prot
Match: TAF8_MOUSE (Transcription initiation factor TFIID subunit 8 OS=Mus musculus GN=Taf8 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-10
Identity = 43/176 (24.43%), Postives = 81/176 (46.02%), Query Frame = 1


Query: 32  KIAVAQICESEGFQTFQQSALETLADIAVRYVQNIGKTANFCANFAGRTECNVFDVIQAL 91
           ++ V+ +    GF++ +++++ETL ++   Y+  IG++A        RT+  + D++  L
Sbjct: 36  QVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTL 95

Query: 92  EDLGSVQGFAGALDIERCLASSSTVKEIARYVAQAEEIPFAYAVPKFPVVKERKLRPTFL 151
            ++G                    V  +  Y  +++ +     V   P V  + + P  L
Sbjct: 96  VEMGF------------------NVDTLPAYAKRSQRM-----VITAPPVTNQPVTPKAL 155

Query: 152 QTGEETPGK-HIPSWLPALPDPETYIASPTVEEKVVEPQKIKTEPEKQCKSAEKSL 207
             G+  P   HIPS  P  PDP TYI +PT  E V + Q ++ +   Q +  E++L
Sbjct: 156 TAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQILREKAASQRRDVERAL 188

[Close]

BLAST of CmoCh04G029330 vs. Swiss-Prot
Match: TAF3_CHICK (Transcription initiation factor TFIID subunit 3 OS=Gallus gallus GN=TAF3 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-09
Identity = 42/149 (28.19%), Postives = 72/149 (48.32%), Query Frame = 1


Query: 24  EDFPQALAKIAVAQICESEGFQTFQQSALETLADIAVRYVQNIGKTANFCANFAGRTECN 83
           E + + L +++VAQIC++ G+ + Q SA + L D+  RY+Q +G+  +      GRT+  
Sbjct: 3   ETYSRWLLRVSVAQICQALGWDSVQVSACDLLTDVLQRYLQGLGRGCHRYCELYGRTD-- 62

Query: 84  VFDVIQALEDLGSVQGFAGALDIERCLASSSTVKEIARYVAQAEEIPFAYAVPKFPVVKE 143
                  L+D+G      G             + E+  Y+   E + FA+ +P FPV K 
Sbjct: 63  -----PILDDVGDAFKLMGV-----------NLHELEDYIHNIEPVTFAHQIPSFPVSKN 122

Query: 144 RKLRPTFLQTGE---ETPGKHIPSWLPAL 170
             L+  F Q G    E   ++IP ++P +
Sbjct: 123 NVLQ--FPQPGSKDAEERKEYIPDYMPPI 131

[Close]

BLAST of CmoCh04G029330 vs. TrEMBL
Match: A0A0A0KSJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G639490 PE=4 SV=1)

HSP 1 Score: 646.7 bits (1667), Expect = 1.7e-182
Identity = 322/377 (85.41%), Postives = 350/377 (92.84%), Query Frame = 1


Query: 1   MNDGGGESGKVHERPKTRKNLGGEDFPQALAKIAVAQICESEGFQTFQQSALETLADIAV 60
           M+DGGGESGKVHERPKTRKNLG EDFP+ALAKIAVAQICESEGFQ FQQSALETLAD+AV
Sbjct: 1   MSDGGGESGKVHERPKTRKNLGSEDFPRALAKIAVAQICESEGFQIFQQSALETLADVAV 60

Query: 61  RYVQNIGKTANFCANFAGRTECNVFDVIQALEDLGSVQGFAGALDIERCLASSSTVKEIA 120
           RYVQN+G TANFCANFAGRTECN+FD+IQALEDLGSVQGFAGA DIE CLASSSTVKE A
Sbjct: 61  RYVQNMGSTANFCANFAGRTECNLFDIIQALEDLGSVQGFAGASDIEHCLASSSTVKEFA 120

Query: 121 RYVAQAEEIPFAYAVPKFPVVKERKLRPTFLQTGEETPGKHIPSWLPALPDPETYIASPT 180
           RYVAQAEE+PFAY+VPKFPVVKERKLRP+FLQ GEE PG+HIPSWLPALPDPETYI SP 
Sbjct: 121 RYVAQAEEVPFAYSVPKFPVVKERKLRPSFLQIGEEPPGEHIPSWLPALPDPETYIESPI 180

Query: 181 VEEKVVEPQKIKTEPEKQCKSAEKSLWNLQQWLFCNGLEGSRREGPRNAAMTKQTQESNP 240
           V+E+VVEPQ IKTEPEKQC++ EKS WNLQQWLFCNGLEGS+RE PRNAAMTKQ QESNP
Sbjct: 181 VKEEVVEPQTIKTEPEKQCRT-EKSFWNLQQWLFCNGLEGSQREDPRNAAMTKQIQESNP 240

Query: 241 FLAPPLQFGEKEVSSVVLPDRILNNSSTEYPVPARENCLVDTHVSVLETFAPAIESLKNS 300
           FLAPPLQFGEKEVSS+VLPD++LNNSSTEY VP  ENC VDTHVSVLETFAPAIES+KN+
Sbjct: 241 FLAPPLQFGEKEVSSIVLPDKVLNNSSTEYHVPVMENCQVDTHVSVLETFAPAIESIKNN 300

Query: 301 LHDSEEKFSLNRRSTVQFKIGTGKKPESSMIELKALNNGVKNSSSWFVGDDKKDDKKRKA 360
            H SEEK+SLNR+STVQFKIGTGKK   +MIEL+ALNNGVK SSSWFVG+D+KDDKKRKA
Sbjct: 301 FHMSEEKYSLNRKSTVQFKIGTGKKAAGNMIELRALNNGVKKSSSWFVGEDEKDDKKRKA 360

Query: 361 EKILKNSIENSNELYQL 378
           EKILK+S+ENSNEL  L
Sbjct: 361 EKILKDSMENSNELSHL 376

[Close]

BLAST of CmoCh04G029330 vs. TrEMBL
Match: M5WU34_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007206mg PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 1.1e-107
Identity = 211/381 (55.38%), Postives = 281/381 (73.75%), Query Frame = 1


Query: 1   MNDGGGESGKVHERP-KTRKNLGGEDFPQALAKIAVAQICESEGFQTFQQSALETLADIA 60
           M+DGGGESG+ HE+  +T++   G+DF +A+AKIAVAQ+CE  GFQT+Q SALETL+D+A
Sbjct: 1   MSDGGGESGREHEQHNRTQRKSSGDDFARAIAKIAVAQVCEIVGFQTYQLSALETLSDVA 60

Query: 61  VRYVQNIGKTANFCANFAGRTECNVFDVIQALEDLGSVQGFAGALDIERCLASSSTVKEI 120
           V Y+ NIGKTA+F AN +GR +CNVFD+IQ LEDLG  QGFAGA D++ CLASS TV+EI
Sbjct: 61  VHYIHNIGKTAHFYANLSGRMDCNVFDIIQGLEDLGLAQGFAGASDVDHCLASSGTVREI 120

Query: 121 ARYVAQAEEIPFAYAVPKFPVVKERKLRPTFLQTGEETPGKHIPSWLPALPDPETYIASP 180
           A+YV + E IPF+Y++P+FPVVK+RKL P+FLQ+G ET G+HIP WLPA P+P TY+ SP
Sbjct: 121 AQYVGETEHIPFSYSIPQFPVVKDRKLTPSFLQSGVETLGEHIPIWLPAFPEPHTYVPSP 180

Query: 181 TVEEKVVEPQKIKTEPEKQCKSAEKSLWNLQQWLFCNGLEGSRREGPRNAAMTKQTQESN 240
              E+  E      E +K+ ++ E+SL+NLQ+ L CNGLEG   + P +A   KQ +ESN
Sbjct: 181 ISNERARELHTDMIEQKKKQRNVERSLFNLQRRLVCNGLEGPSID-PGDADKAKQARESN 240

Query: 241 PFLAPPLQFGEKEVSSVVLPDRILNNSSTEYPVPARENCLVDTHVSVLETFAPAIESLKN 300
           PFLA PLQ+GE EVS V LP ++ + ++ E  V   EN + +   SVLETFAPAIE++K+
Sbjct: 241 PFLAAPLQYGETEVSHVALPAKLSSEATVEKLV--AENRVAEKCSSVLETFAPAIEAMKS 300

Query: 301 SLHDSEEKFS---LNRRSTVQFKIGTGKKPESSMIELKALNNGVKNSSSWFVGDDKKDDK 360
           S  +S+E+     L+RR TVQFKIG  K   S+M+     N G + + SWF  +++KD+K
Sbjct: 301 SSCESQEEHKEILLSRRPTVQFKIGIAKTSFSTMLHSSPHNKGFQKNYSWFGRENEKDEK 360

Query: 361 KRKAEKILKNSIENSNELYQL 378
           K++AEKILKNS+ENS EL QL
Sbjct: 361 KKRAEKILKNSMENSQELAQL 378

[Close]

BLAST of CmoCh04G029330 vs. TrEMBL
Match: F6H493_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00340 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 5.2e-107
Identity = 214/380 (56.32%), Postives = 269/380 (70.79%), Query Frame = 1


Query: 1   MNDGGGESGKVHERPKTRKNLGGEDFPQALAKIAVAQICESEGFQTFQQSALETLADIAV 60
           M+DGGGESG+  +R   RK+    DFPQA+AKIAVAQICES GFQ FQQSALETL+++ V
Sbjct: 1   MSDGGGESGRESDRATKRKS-SDRDFPQAIAKIAVAQICESAGFQGFQQSALETLSEVVV 60

Query: 61  RYVQNIGKTANFCANFAGRTECNVFDVIQALEDLGSVQGFAGALDIERCLASSSTVKEIA 120
           RY++ +GKTA+  AN A RTECN+FD+IQ LEDL S+QGF+GA D + CLA S TV+EI 
Sbjct: 61  RYIRELGKTAHTYANSACRTECNIFDIIQGLEDLASLQGFSGASDSDHCLAGSGTVREIV 120

Query: 121 RYVAQAEEIPFAYAVPKFPVVKERKLRPTFLQTGEETPGKHIPSWLPALPDPETYIASPT 180
           +YV++AEEIPFA++VP FPV+++RK  P+FLQ GEE PG HIP WLPA PDP+TY+ SP 
Sbjct: 121 QYVSEAEEIPFAHSVPHFPVIRDRKQTPSFLQIGEEPPGDHIPDWLPAFPDPQTYVHSPV 180

Query: 181 VEEKVVEPQKIKTEPEKQCKSAEKSLWNLQQWLFCNGLEGSRREGPRNAAMTKQTQESNP 240
           + E+  +P     E  +Q K AE SL NLQQ L CNGLEG     P +AA  ++  E+NP
Sbjct: 181 LNERGADPCAGNIEQARQHKKAEWSLLNLQQQLACNGLEGPSMIDPGDAAKARRAAETNP 240

Query: 241 FLAPPLQFGEKEVSSVVLPDRILNNSSTEYPVPARENCLVDTHVSVLETFAPAIESLKNS 300
           FL+ PL FGEK VS V LP ++ N +  E    A EN  V  HVSVLETFAPAIE +K+ 
Sbjct: 241 FLSAPLHFGEKGVSPVFLPAKLSNEAVVENQ--AGENHAVANHVSVLETFAPAIELMKSR 300

Query: 301 LHDSEE---KFSLNRRSTVQFKIGTGKKPESSMIELKALNNGVKNSSSWFVGDDKKDDKK 360
             +SEE   K   N+R  VQFKI  GKK   + ++L   N  V+  +SWF  D++KDDKK
Sbjct: 301 SCESEEGRKKVLSNQRPAVQFKIEIGKKSTGTALDLSFQNKDVEKITSWFGKDNEKDDKK 360

Query: 361 RKAEKILKNSIENSNELYQL 378
           R+AEKILK S++N  EL QL
Sbjct: 361 RRAEKILKESMKNPQELAQL 377

[Close]

BLAST of CmoCh04G029330 vs. TrEMBL
Match: A5C8M1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014912 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.9e-104
Identity = 212/380 (55.79%), Postives = 265/380 (69.74%), Query Frame = 1


Query: 1   MNDGGGESGKVHERPKTRKNLGGEDFPQALAKIAVAQICESEGFQTFQQSALETLADIAV 60
           M+DGGGESG+  +R   RK+    DFPQA+AKIAVAQICES GFQ FQQSALETL+++ V
Sbjct: 1   MSDGGGESGRESDRATKRKS-SDRDFPQAIAKIAVAQICESAGFQGFQQSALETLSEVVV 60

Query: 61  RYVQNIGKTANFCANFAGRTECNVFDVIQALEDLGSVQGFAGALDIERCLASSSTVKEIA 120
           RY++ +GKTA+  AN A RTECN+FD+IQ LEDL S+QGF+GA D + CLA S TV+EI 
Sbjct: 61  RYIRELGKTAHTYANSACRTECNIFDIIQGLEDLASLQGFSGASDSDHCLAGSGTVREIV 120

Query: 121 RYVAQAEEIPFAYAVPKFPVVKERKLRPTFLQTGEETPGKHIPSWLPALPDPETYIASPT 180
           +YV++AEEIPFA++VP FPV+++RK  P+FLQ GEE PG HIP WLPA PDP+TY+ SP 
Sbjct: 121 QYVSEAEEIPFAHSVPHFPVIRDRKQTPSFLQIGEEPPGDHIPDWLPAFPDPQTYVHSP- 180

Query: 181 VEEKVVEPQKIKTEPEKQCKSAEKSLWNLQQWLFCNGLEGSRREGPRNAAMTKQTQESNP 240
                     +  E  +Q K AE SL NLQQ L CNGLEG     P +AA  ++  E+NP
Sbjct: 181 ----------VTLEQARQHKKAEWSLLNLQQQLACNGLEGPSMIDPGDAAKARRAAETNP 240

Query: 241 FLAPPLQFGEKEVSSVVLPDRILNNSSTEYPVPARENCLVDTHVSVLETFAPAIESLKNS 300
           FL+ PL FGEK VS V LP ++ N +  E    A EN  V  HVSVLETFAPAIE +K+ 
Sbjct: 241 FLSAPLHFGEKGVSPVFLPAKLSNEAVVENQ--AGENHAVANHVSVLETFAPAIELMKSR 300

Query: 301 LHDSEE---KFSLNRRSTVQFKIGTGKKPESSMIELKALNNGVKNSSSWFVGDDKKDDKK 360
             +SEE   K   N+R  VQFKI  GKK   + ++L   N  V+  +SWF  D++KDDKK
Sbjct: 301 SCESEEGRKKVLSNQRPAVQFKIEIGKKSTGTALDLSFQNKDVEKITSWFGKDNEKDDKK 360

Query: 361 RKAEKILKNSIENSNELYQL 378
           R+AEKILK S++N  EL QL
Sbjct: 361 RRAEKILKESMKNPQELAQL 366

[Close]

BLAST of CmoCh04G029330 vs. TrEMBL
Match: B9IK88_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s13060g PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.4e-96
Identity = 194/384 (50.52%), Postives = 257/384 (66.93%), Query Frame = 1


Query: 1   MNDGGGESGKVHERP----KTRKNLGGEDFPQALAKIAVAQICESEGFQTFQQSALETLA 60
           M+ GGGESG++H++     K +  + G++F +A+AKIAVAQ+CE+ GFQ+FQQSALE L+
Sbjct: 1   MSHGGGESGRLHDKAGDSGKRKSRVSGDEFTRAIAKIAVAQMCETVGFQSFQQSALEKLS 60

Query: 61  DIAVRYVQNIGKTANFCANFAGRTECNVFDVIQALEDLGSVQGFAGALDIERCLASSSTV 120
           D+   Y++N+GKTA F AN AGRTE NVFDVIQ +E+LG  QGFAGA +++ CLASS  V
Sbjct: 61  DVTTWYIRNLGKTAQFYANLAGRTEGNVFDVIQGMEELGLSQGFAGASNVDHCLASSGIV 120

Query: 121 KEIARYVAQAEEIPFAYAVPKFPVVKERKLRPTFLQTGEETPGKHIPSWLPALPDPETYI 180
           +EI +Y+  AE+IPF Y++P FPV +ERK  P+F Q  EE+P +HIP+WLPA PDP+T++
Sbjct: 121 REIVQYIGDAEDIPFVYSIPPFPVARERKPVPSFFQICEESPAEHIPAWLPAFPDPQTHV 180

Query: 181 ASPTVEEKVVEPQKIKTEPEKQCKSAEKSLWNLQQWLFCNGLEGSRREGPRNAAMTKQTQ 240
             P   E        K EP +     + S  NL Q   CNG  G       N+A   Q  
Sbjct: 181 QLPAGNEGDAVFNADKIEPARHHLKMDMSSMNLPQHFTCNGSGGPSSVTFGNSARATQGT 240

Query: 241 ESNPFLAPPLQFGEKEVSSVVLPDRILNNSSTEYPVPARENCLVDTHVSVLETFAPAIES 300
           ESNPFLA PLQFGEKEVS +V P R+ + ++  YPV   +N ++D H+SVLETFAPAIE+
Sbjct: 241 ESNPFLAAPLQFGEKEVSHLVPPARLSDEAAVRYPV--EQNRIMDNHISVLETFAPAIEA 300

Query: 301 LKNSLHDSEE---KFSLNRRSTVQFKIGTGKKPESSMIELKALNNGVKNSSSWFVGDDKK 360
           +K+   DSEE   K  LN+R  VQFKI  GK   +   +L     G++  S WF  D + 
Sbjct: 301 MKSRFCDSEEGQKKVLLNQRPAVQFKIQVGKNSLAGAPDLSPQKIGIEKISKWFGKDSEN 360

Query: 361 DDKKRKAEKILKNSIENSNELYQL 378
           DDKKR+AEKILK S+EN +EL +L
Sbjct: 361 DDKKRRAEKILKQSMENPSELGEL 382

[Close]

BLAST of CmoCh04G029330 vs. TAIR10
Match: AT5G15570.1 (AT5G15570.1 Bromodomain transcription factor)

HSP 1 Score: 213.8 bits (543), Expect = 1.9e-55
Identity = 145/385 (37.66%), Postives = 208/385 (54.03%), Query Frame = 1


Query: 1   MNDGGGESGKVHERPKTRKNLG-GEDFPQALAKIAVAQICES-------------EG--F 60
           M +GGGE G      + ++++  G DF  ALA++A AQICES             EG  F
Sbjct: 1   MINGGGEGGSQRRELQGKRSMSRGNDFAYALARMATAQICESVEINSYQESSQSREGLRF 60

Query: 61  QTFQQSALETLADIAVRYVQNIGKTANFCANFAGRTECNVFDVIQALEDLGSVQGFAGAL 120
            +FQ++ALETL D+ ++Y+QNIGKTA F  N AGR E N  D++QALEDLGS  GF GA 
Sbjct: 61  SSFQETALETLTDVVIQYIQNIGKTAQFYVNMAGRVESNALDIVQALEDLGSGLGFDGAH 120

Query: 121 DIERCLASSSTVKEIARYVAQAEEIPFAYAVPKFPVVKERKLRPTFLQTGEETPGKHIPS 180
           D+E CLA S  VK+I RY  +AEEIPF Y++P+FP  + ++  P+F   G E P +HIP 
Sbjct: 121 DVEHCLADSGVVKDIIRYTGEAEEIPFVYSLPRFPFNRGKRPAPSFSDIGVEPPDEHIPV 180

Query: 181 WLPALPDPETYIASPTVEEKVVEPQKIKTEPEKQCKSAEKSLWNLQQWLFCNGLEGSRRE 240
           WLPA   PET +++ + E  V      K E + Q +    SL ++QQ +  + L+  +  
Sbjct: 181 WLPAF--PETKMSNGSEEINV-----DKIERDVQSRDNGSSLMSVQQSVDVDRLKVQKSM 240

Query: 241 GPRNAAMTKQTQESNPFLAPPLQFGEKEV--SSVVLPDRILNNSSTEYPVPARENCLVDT 300
             ++     +  E NPFLA P+  GEK V  S VV P  +     +   +P  ++  +  
Sbjct: 241 DQKDVQKPIEEPEGNPFLAAPIWVGEKNVSLSRVVCPSELRKEEISTNHLP-EKHMSMSH 300

Query: 301 HVSVLETFAPAIE-SLKNSLHDSEEKFSLNRRST----VQFKIGTGKKPESSMIELKALN 360
           H+  LE +A + + + KN L   E++   +   T    ++FKIGT K  E   I      
Sbjct: 301 HIPALEAYALSDKINDKNRLAGMEDEQKRDGARTQGALLRFKIGTRKASECWKI------ 360

Query: 361 NGVKNSSSWFVGDDKKDDKKRKAEK 363
           N       WF  D  K +KK + E+
Sbjct: 361 NQCLEEKGWFKEDGNKREKKVEREE 371

[Close]

BLAST of CmoCh04G029330 vs. TAIR10
Match: AT3G02160.1 (AT3G02160.1 Bromodomain transcription factor)

HSP 1 Score: 209.1 bits (531), Expect = 4.6e-54
Identity = 155/387 (40.05%), Postives = 211/387 (54.52%), Query Frame = 1


Query: 1   MNDGGGESG-KVHERPKTRKNLGGEDFPQALAKIAVAQICES------------EG--FQ 60
           MN+G GE G +  E    RK   G DF  ++A++AVAQICES            EG  F 
Sbjct: 17  MNNGVGEGGSQQRELHGKRKLFRGNDFAFSIARMAVAQICESVEVNPYQESQTREGVRFS 76

Query: 61  TFQQSALETLADIAVRYVQNIGKTANFCANFAGRTECNVFDVIQALEDLGSVQGFAGALD 120
           +FQ+SAL+TL D+AV+Y+Q+IGKTA+  AN AGR + N  D++QALEDLGS  GFAG  D
Sbjct: 77  SFQESALDTLTDVAVQYIQSIGKTAHLYANLAGRVDGNSLDILQALEDLGSGLGFAGVSD 136

Query: 121 IERCLASSSTVKEIARYVAQAEEIPFAYAVPKFPVVKERKLRPTFLQTGEETPGKHIPSW 180
            + CLA S  VK+I RY  +AEEIPF Y++P+FP  KE+K  P+F + G E P +HIP W
Sbjct: 137 TDHCLADSGVVKDIIRYTGEAEEIPFVYSLPRFPFSKEKKPAPSFSEVGAEPPDEHIPVW 196

Query: 181 LPALPDPETYIASPTVEEKVVEPQKIKTEPEKQCKSAEKSLWNLQQWLFCNGLEGSRREG 240
           LPA P+ E       + ++  E      E E   K    SL ++Q      G     +  
Sbjct: 197 LPAFPETE-------LCDRSEETNAATIEGEIPSKENGSSLPSMQLSFDGGGRLEIHKSS 256

Query: 241 PRNAAMTKQTQESNPFLAPPLQFGEKEVSSVVLPDRILNNSSTEYPVPARENCLVDTHVS 300
                 T+   E N FL  PL+F EK VS VV P  + N       VP + +   + H+ 
Sbjct: 257 KDVGESTEAVVEGNLFLTAPLRFVEKNVSPVVRPLELSNEVVRTNHVPDK-HVRNNHHIP 316

Query: 301 VLETFAPAIE-SLKNSLHDSE--EKFSLNRR--STVQFKIGTGKKPESSMIELKALNNGV 360
           +LE  AP+ + + KN L  S+  EK  + R+  + V+FKIGT K+   SM   K   N  
Sbjct: 317 ILEASAPSDKINNKNWLAISKDVEKVDVARKELTLVRFKIGTTKR---SMCLAK---NRS 376

Query: 361 KNSSSWF-VGDDKKD---DKKRKAEKI 364
                WF  G+DK++   + K K E+I
Sbjct: 377 FQEEGWFQEGEDKREKTSEIKEKRERI 389

[Close]

BLAST of CmoCh04G029330 vs. TAIR10
Match: AT4G34340.1 (AT4G34340.1 TBP-associated factor 8)

HSP 1 Score: 190.3 bits (482), Expect = 2.2e-48
Identity = 123/356 (34.55%), Postives = 186/356 (52.25%), Query Frame = 1


Query: 25  DFPQALAKIAVAQICESEGFQTFQQSALETLADIAVRYVQNIGKTANFCANFAGRTECNV 84
           +F  A AK AVAQ+CES G++ F+  ALE+L+  A++Y+  +GKTA   AN  GR++CNV
Sbjct: 25  EFSHAAAKAAVAQVCESVGYENFKDPALESLSGFALQYILQLGKTATSFANLTGRSQCNV 84

Query: 85  FDVIQALEDLGSVQGFAGALDIERCLASSSTVKEIARYVAQAEEIPFAYAVPKFPVV--- 144
           FD+I AL+DL    G  G       L  S  ++EI  +V  +EE+PF+  +P FPV    
Sbjct: 85  FDIILALDDLTDNNGEQGISSESCSLGRSIKLREIIDFVNSSEEVPFSQPLPSFPVAISD 144

Query: 145 KERKLRPTFLQTGEETPGKHIPSWLPALPDPETYIASPTVEEKVVEPQKIKTEPEKQCKS 204
           + RK+ P+F++ GE  PGKHIP WLPA PDP TY  +P   E+V +P+  K E  +Q + 
Sbjct: 145 RSRKMIPSFVEIGETPPGKHIPLWLPAFPDPHTYKETPMWIERVSDPRGDKIEQARQRRK 204

Query: 205 AEKSLWNLQQWLFCNGLEGSRREGPRNAAMTKQTQESNPFLAPPLQFGEKEVSSVVLPDR 264
           AE++L +LQ+ L C     +   G  +    +   +            E E+ SV   ++
Sbjct: 205 AERALLSLQRKLVCKISSRNPVWGDMDGVKEEMRDD------------ESELRSVSSGEK 264

Query: 265 ILNNSSTEYPVPARENCLVDTHVSVLETFAPAIESLKNSLHDSEEKFSLNRRSTVQFKIG 324
           +                L    +SV+E FAPA+E+ ++             +     K+ 
Sbjct: 265 V--------------ESLNRDGLSVIEAFAPAMEAARDGFSSEAHTEWKKNKPVALSKLR 324

Query: 325 TGKKPESSMIELKALNNGVKNSSSWFVGDDKKDDKKRKAEKILKNSIENSNELYQL 378
           T KK     ++L     G     S FV ++ +DDK+R+AE IL+  +EN  +L QL
Sbjct: 325 TEKKFLGQPLDLSLQMKGEDRPIS-FVREEDRDDKRRRAEFILRQCMENPVDLNQL 353

[Close]

BLAST of CmoCh04G029330 vs. TAIR10
Match: AT1G31240.1 (AT1G31240.1 Bromodomain transcription factor)

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-16
Identity = 51/159 (32.08%), Postives = 85/159 (53.46%), Query Frame = 1


Query: 25  DFPQALAKIAVAQICESEGFQTFQQSALETLADIAVRYVQNIGKTANFCANFAGRTECNV 84
           +F  +L KIAV+QIC+S G++    SAL TL     +++Q++ + A+  +N A RTE N+
Sbjct: 25  EFSFSLTKIAVSQICQSIGYKATDASALNTLTLTTTKFLQSLAELASSFSNTANRTEVNL 84

Query: 85  FDVIQALEDLG-----SVQGFAGALDIE-RCLASSSTVKEIARYVAQAEEIPFAYAVPKF 144
           FD++  L+D+         G +   DIE +CL  S+ ++ ++ +V  A EIPFA  +P+ 
Sbjct: 85  FDIVNGLQDIALSTSDCFPGGSTVHDIESQCLIKSAVLRNLSDFVTYAPEIPFAKPLPR- 144

Query: 145 PVVKERKLRPTF------LQTGEETPGKHIPSWLPALPD 172
                R+   +F      +          +P+WLP  PD
Sbjct: 145 -----RERDGSFGGDLDHVAVTRSVDVTSVPAWLPPFPD 177

[Close]

BLAST of CmoCh04G029330 vs. NCBI nr
Match: gi|449447663|ref|XP_004141587.1| (PREDICTED: transcription initiation factor TFIID subunit 8 [Cucumis sativus])

HSP 1 Score: 646.7 bits (1667), Expect = 2.4e-182
Identity = 322/377 (85.41%), Postives = 350/377 (92.84%), Query Frame = 1


Query: 1   MNDGGGESGKVHERPKTRKNLGGEDFPQALAKIAVAQICESEGFQTFQQSALETLADIAV 60
           M+DGGGESGKVHERPKTRKNLG EDFP+ALAKIAVAQICESEGFQ FQQSALETLAD+AV
Sbjct: 1   MSDGGGESGKVHERPKTRKNLGSEDFPRALAKIAVAQICESEGFQIFQQSALETLADVAV 60

Query: 61  RYVQNIGKTANFCANFAGRTECNVFDVIQALEDLGSVQGFAGALDIERCLASSSTVKEIA 120
           RYVQN+G TANFCANFAGRTECN+FD+IQALEDLGSVQGFAGA DIE CLASSSTVKE A
Sbjct: 61  RYVQNMGSTANFCANFAGRTECNLFDIIQALEDLGSVQGFAGASDIEHCLASSSTVKEFA 120

Query: 121 RYVAQAEEIPFAYAVPKFPVVKERKLRPTFLQTGEETPGKHIPSWLPALPDPETYIASPT 180
           RYVAQAEE+PFAY+VPKFPVVKERKLRP+FLQ GEE PG+HIPSWLPALPDPETYI SP 
Sbjct: 121 RYVAQAEEVPFAYSVPKFPVVKERKLRPSFLQIGEEPPGEHIPSWLPALPDPETYIESPI 180

Query: 181 VEEKVVEPQKIKTEPEKQCKSAEKSLWNLQQWLFCNGLEGSRREGPRNAAMTKQTQESNP 240
           V+E+VVEPQ IKTEPEKQC++ EKS WNLQQWLFCNGLEGS+RE PRNAAMTKQ QESNP
Sbjct: 181 VKEEVVEPQTIKTEPEKQCRT-EKSFWNLQQWLFCNGLEGSQREDPRNAAMTKQIQESNP 240

Query: 241 FLAPPLQFGEKEVSSVVLPDRILNNSSTEYPVPARENCLVDTHVSVLETFAPAIESLKNS 300
           FLAPPLQFGEKEVSS+VLPD++LNNSSTEY VP  ENC VDTHVSVLETFAPAIES+KN+
Sbjct: 241 FLAPPLQFGEKEVSSIVLPDKVLNNSSTEYHVPVMENCQVDTHVSVLETFAPAIESIKNN 300

Query: 301 LHDSEEKFSLNRRSTVQFKIGTGKKPESSMIELKALNNGVKNSSSWFVGDDKKDDKKRKA 360
            H SEEK+SLNR+STVQFKIGTGKK   +MIEL+ALNNGVK SSSWFVG+D+KDDKKRKA
Sbjct: 301 FHMSEEKYSLNRKSTVQFKIGTGKKAAGNMIELRALNNGVKKSSSWFVGEDEKDDKKRKA 360

Query: 361 EKILKNSIENSNELYQL 378
           EKILK+S+ENSNEL  L
Sbjct: 361 EKILKDSMENSNELSHL 376

[Close]

BLAST of CmoCh04G029330 vs. NCBI nr
Match: gi|659118932|ref|XP_008459385.1| (PREDICTED: transcription initiation factor TFIID subunit 8 [Cucumis melo])

HSP 1 Score: 646.7 bits (1667), Expect = 2.4e-182
Identity = 324/377 (85.94%), Postives = 350/377 (92.84%), Query Frame = 1


Query: 1   MNDGGGESGKVHERPKTRKNLGGEDFPQALAKIAVAQICESEGFQTFQQSALETLADIAV 60
           M+DGGGESGKVHERPKTRKNLG EDFP+ALAKIAVAQICESEGFQ FQQSALETLAD+AV
Sbjct: 1   MSDGGGESGKVHERPKTRKNLGSEDFPRALAKIAVAQICESEGFQIFQQSALETLADVAV 60

Query: 61  RYVQNIGKTANFCANFAGRTECNVFDVIQALEDLGSVQGFAGALDIERCLASSSTVKEIA 120
           RYVQN+G TANFCANFAGRTECN+FD+IQALEDLGSVQGFAGA DIE CLASSSTVKEIA
Sbjct: 61  RYVQNMGSTANFCANFAGRTECNLFDIIQALEDLGSVQGFAGASDIEHCLASSSTVKEIA 120

Query: 121 RYVAQAEEIPFAYAVPKFPVVKERKLRPTFLQTGEETPGKHIPSWLPALPDPETYIASPT 180
           RYVAQAEEIPFAY+VPKFPVVKERKLRP+FLQ GEE PG+HIPSWLPALPDPETYI SP 
Sbjct: 121 RYVAQAEEIPFAYSVPKFPVVKERKLRPSFLQIGEEPPGEHIPSWLPALPDPETYIESPI 180

Query: 181 VEEKVVEPQKIKTEPEKQCKSAEKSLWNLQQWLFCNGLEGSRREGPRNAAMTKQTQESNP 240
           V+E+VVEPQ IKTEPE QC+S+EKS  NLQQWLFCNGLEGS+RE PRNAAMTKQ QESNP
Sbjct: 181 VKEEVVEPQTIKTEPEIQCRSSEKSFRNLQQWLFCNGLEGSQREDPRNAAMTKQIQESNP 240

Query: 241 FLAPPLQFGEKEVSSVVLPDRILNNSSTEYPVPARENCLVDTHVSVLETFAPAIESLKNS 300
           FLAPPLQFGEKEVSS+VLP+++LNNSSTEY VP  ENC VDTHVSVLETFAPAIES+KN+
Sbjct: 241 FLAPPLQFGEKEVSSIVLPNKVLNNSSTEYHVPVMENCHVDTHVSVLETFAPAIESIKNN 300

Query: 301 LHDSEEKFSLNRRSTVQFKIGTGKKPESSMIELKALNNGVKNSSSWFVGDDKKDDKKRKA 360
            H SEEK+SLNR+STVQFKIGTGKK   SMIEL ALNNGVKNSSSWFVG+D+KDDKKRKA
Sbjct: 301 FHMSEEKYSLNRKSTVQFKIGTGKKAAGSMIELTALNNGVKNSSSWFVGEDEKDDKKRKA 360

Query: 361 EKILKNSIENSNELYQL 378
           EKILK+S+ENSNEL  L
Sbjct: 361 EKILKDSMENSNELSHL 377

[Close]

BLAST of CmoCh04G029330 vs. NCBI nr
Match: gi|1009126308|ref|XP_015880081.1| (PREDICTED: transcription initiation factor TFIID subunit 8-like, partial [Ziziphus jujuba])

HSP 1 Score: 399.1 bits (1024), Expect = 8.9e-108
Identity = 209/380 (55.00%), Postives = 275/380 (72.37%), Query Frame = 1


Query: 1   MNDGGGESGKVHERPKTRKNLGGEDFPQALAKIAVAQICESEGFQTFQQSALETLADIAV 60
           M+DGGGE+G+ H +P T++ LGG+++ QA+AKIAVAQICE EGFQTFQ SALETL+DIAV
Sbjct: 6   MSDGGGETGREHPKPNTQRKLGGDEYAQAIAKIAVAQICEKEGFQTFQPSALETLSDIAV 65

Query: 61  RYVQNIGKTANFCANFAGRTECNVFDVIQALEDLGSVQGFAGALDIERCLASSSTVKEIA 120
           RY +NIGK A+  AN AGRTECNVFD+IQ LED+G  QGF+GA D++ CLA S TV+EI 
Sbjct: 66  RYTRNIGKAAHDYANLAGRTECNVFDIIQGLEDMGLPQGFSGASDVDHCLACSGTVREII 125

Query: 121 RYVAQAEEIPFAYAVPKFPVVKERKLRPTFLQTGEETPGKHIPSWLPALPDPETYIASPT 180
           +YV Q++++PFAYA+P+FPVVK+R L P+FLQ G+E P  HIP+WLP  P+P TY   PT
Sbjct: 126 QYVGQSDDVPFAYAIPQFPVVKDRNLTPSFLQVGKEPPEDHIPAWLPVFPEPHTYAPLPT 185

Query: 181 VEEKVVEPQKIKTEPEKQCKSAEKSLWNLQQWLFCNGLEGSRREGPRNAAMTKQTQESNP 240
            + + +EP  +K E +K+ +  ++SL NL+Q   CNGL+G   E  R+A   KQ  E NP
Sbjct: 186 PDARAMEPM-VKME-QKKHRKVDRSLLNLRQQFVCNGLDGLSSEDTRDADKGKQAGEGNP 245

Query: 241 FLAPPLQFGEKEVSSVVLPDRILNNSSTEYPVPARENCLVDTHVSVLETFAPAIESLKNS 300
           +LA P+Q+GEKEVS V LP ++ N ++ E PV + +  ++  HVSVL TFAPAI++++  
Sbjct: 246 YLAAPMQYGEKEVSRVFLPAKLSNEATVENPVSSSQ--VMGNHVSVLATFAPAIDAMQGR 305

Query: 301 LHDSEE---KFSLNRRSTVQFKIGTGKKPESSMIELKALNNGVKNSSSWFVGDDKKDDKK 360
           L DSEE      LNR +TVQFKIGTGKK  ++M  L   N G +  S  F  +  KD+KK
Sbjct: 306 LLDSEEGQKNVLLNRSNTVQFKIGTGKKSLNTMPHLSPRNTGFEMISPSFGMEGDKDEKK 365

Query: 361 RKAEKILKNSIENSNELYQL 378
           R+AEKILK S+EN   L QL
Sbjct: 366 RRAEKILKESMENPQGLAQL 381

[Close]

BLAST of CmoCh04G029330 vs. NCBI nr
Match: gi|595936707|ref|XP_007215547.1| (hypothetical protein PRUPE_ppa007206mg [Prunus persica])

HSP 1 Score: 398.3 bits (1022), Expect = 1.5e-107
Identity = 211/381 (55.38%), Postives = 281/381 (73.75%), Query Frame = 1


Query: 1   MNDGGGESGKVHERP-KTRKNLGGEDFPQALAKIAVAQICESEGFQTFQQSALETLADIA 60
           M+DGGGESG+ HE+  +T++   G+DF +A+AKIAVAQ+CE  GFQT+Q SALETL+D+A
Sbjct: 1   MSDGGGESGREHEQHNRTQRKSSGDDFARAIAKIAVAQVCEIVGFQTYQLSALETLSDVA 60

Query: 61  VRYVQNIGKTANFCANFAGRTECNVFDVIQALEDLGSVQGFAGALDIERCLASSSTVKEI 120
           V Y+ NIGKTA+F AN +GR +CNVFD+IQ LEDLG  QGFAGA D++ CLASS TV+EI
Sbjct: 61  VHYIHNIGKTAHFYANLSGRMDCNVFDIIQGLEDLGLAQGFAGASDVDHCLASSGTVREI 120

Query: 121 ARYVAQAEEIPFAYAVPKFPVVKERKLRPTFLQTGEETPGKHIPSWLPALPDPETYIASP 180
           A+YV + E IPF+Y++P+FPVVK+RKL P+FLQ+G ET G+HIP WLPA P+P TY+ SP
Sbjct: 121 AQYVGETEHIPFSYSIPQFPVVKDRKLTPSFLQSGVETLGEHIPIWLPAFPEPHTYVPSP 180

Query: 181 TVEEKVVEPQKIKTEPEKQCKSAEKSLWNLQQWLFCNGLEGSRREGPRNAAMTKQTQESN 240
              E+  E      E +K+ ++ E+SL+NLQ+ L CNGLEG   + P +A   KQ +ESN
Sbjct: 181 ISNERARELHTDMIEQKKKQRNVERSLFNLQRRLVCNGLEGPSID-PGDADKAKQARESN 240

Query: 241 PFLAPPLQFGEKEVSSVVLPDRILNNSSTEYPVPARENCLVDTHVSVLETFAPAIESLKN 300
           PFLA PLQ+GE EVS V LP ++ + ++ E  V   EN + +   SVLETFAPAIE++K+
Sbjct: 241 PFLAAPLQYGETEVSHVALPAKLSSEATVEKLV--AENRVAEKCSSVLETFAPAIEAMKS 300

Query: 301 SLHDSEEKFS---LNRRSTVQFKIGTGKKPESSMIELKALNNGVKNSSSWFVGDDKKDDK 360
           S  +S+E+     L+RR TVQFKIG  K   S+M+     N G + + SWF  +++KD+K
Sbjct: 301 SSCESQEEHKEILLSRRPTVQFKIGIAKTSFSTMLHSSPHNKGFQKNYSWFGRENEKDEK 360

Query: 361 KRKAEKILKNSIENSNELYQL 378
           K++AEKILKNS+ENS EL QL
Sbjct: 361 KKRAEKILKNSMENSQELAQL 378

[Close]

BLAST of CmoCh04G029330 vs. NCBI nr
Match: gi|645249772|ref|XP_008230896.1| (PREDICTED: transcription initiation factor TFIID subunit 8 [Prunus mume])

HSP 1 Score: 396.7 bits (1018), Expect = 4.4e-107
Identity = 209/381 (54.86%), Postives = 280/381 (73.49%), Query Frame = 1


Query: 1   MNDGGGESGKVHERP-KTRKNLGGEDFPQALAKIAVAQICESEGFQTFQQSALETLADIA 60
           M+DGGGESG+ HE+  +T++   G+DF +A+AKIAVAQ+CE  GFQTFQ SA+ETL+D+A
Sbjct: 1   MSDGGGESGREHEQHNRTQRKSSGDDFARAIAKIAVAQVCEIVGFQTFQLSAIETLSDVA 60

Query: 61  VRYVQNIGKTANFCANFAGRTECNVFDVIQALEDLGSVQGFAGALDIERCLASSSTVKEI 120
           V Y+ NIGKTA+F AN +GR +CNVFD+IQ LEDLG  QGFAGA D++ CLASS TV+EI
Sbjct: 61  VHYIHNIGKTAHFYANLSGRMDCNVFDIIQGLEDLGLAQGFAGASDVDHCLASSGTVREI 120

Query: 121 ARYVAQAEEIPFAYAVPKFPVVKERKLRPTFLQTGEETPGKHIPSWLPALPDPETYIASP 180
           A+YV + E IPF+Y++P+FPVVK+RKL P+FLQ+G ET G+HIP WLPA P+P TY+ SP
Sbjct: 121 AQYVGETEHIPFSYSIPQFPVVKDRKLTPSFLQSGVETSGEHIPIWLPAFPEPHTYVQSP 180

Query: 181 TVEEKVVEPQKIKTEPEKQCKSAEKSLWNLQQWLFCNGLEGSRREGPRNAAMTKQTQESN 240
              E+  E      E +K+ ++ E+SL+NLQQ L CNGLEG   + P +A   KQ +ESN
Sbjct: 181 ISNERARELHTDMIEQKKKQRNVERSLFNLQQRLVCNGLEGPSID-PGDADKAKQARESN 240

Query: 241 PFLAPPLQFGEKEVSSVVLPDRILNNSSTEYPVPARENCLVDTHVSVLETFAPAIESLKN 300
           PFLA PLQ+GE EVS V LP ++ + ++ E  V   EN + +   SVLETFAPAIE++K+
Sbjct: 241 PFLAAPLQYGETEVSHVALPAKLSSETTVEKLV--AENRVAEKCSSVLETFAPAIEAMKS 300

Query: 301 SLHDSEEKFS---LNRRSTVQFKIGTGKKPESSMIELKALNNGVKNSSSWFVGDDKKDDK 360
           S  +S+E+     L+RR TVQFKIG+ K   S+M+     N G + +  WF  +++K++K
Sbjct: 301 SSCESQEEHKEILLSRRPTVQFKIGSAKTSFSTMLHSSPHNKGFQKNYPWFGRENEKEEK 360

Query: 361 KRKAEKILKNSIENSNELYQL 378
           K++ EKILKNS+ENS EL QL
Sbjct: 361 KKRTEKILKNSMENSQELAQL 378

The following BLAST results are available for this feature:

BLAST of CmoCh04G029330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TAF8_ARATH	3.9e-47	34.55	Transcription initiation factor TFIID subunit 8 OS=Arabidopsis thaliana GN=TAF8 ...	[more]
TAF8_BOVIN	3.8e-10	24.43	Transcription initiation factor TFIID subunit 8 OS=Bos taurus GN=TAF8 PE=2 SV=1	[more]
TAF8_HUMAN	3.8e-10	24.43	Transcription initiation factor TFIID subunit 8 OS=Homo sapiens GN=TAF8 PE=1 SV=...	[more]
TAF8_MOUSE	5.0e-10	24.43	Transcription initiation factor TFIID subunit 8 OS=Mus musculus GN=Taf8 PE=2 SV=...	[more]
TAF3_CHICK	2.5e-09	28.19	Transcription initiation factor TFIID subunit 3 OS=Gallus gallus GN=TAF3 PE=2 SV...	[more]

BLAST of CmoCh04G029330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSJ1_CUCSA	1.7e-182	85.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G639490 PE=4 SV=1	[more]
M5WU34_PRUPE	1.1e-107	55.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007206mg PE=4 SV=1	[more]
F6H493_VITVI	5.2e-107	56.32	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00340 PE=4 SV=...	[more]
A5C8M1_VITVI	1.9e-104	55.79	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014912 PE=4 SV=1	[more]
B9IK88_POPTR	1.4e-96	50.52	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s13060g PE=4 SV=1	[more]

BLAST of CmoCh04G029330 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15570.1	1.9e-55	37.66	Bromodomain transcription factor	[more]
AT3G02160.1	4.6e-54	40.05	Bromodomain transcription factor	[more]
AT4G34340.1	2.2e-48	34.55	TBP-associated factor 8	[more]
AT1G31240.1	2.9e-16	32.08	Bromodomain transcription factor	[more]

BLAST of CmoCh04G029330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447663\|ref\|XP_004141587.1\|	2.4e-182	85.41	PREDICTED: transcription initiation factor TFIID subunit 8 [Cucumis sativus]	[more]
gi\|659118932\|ref\|XP_008459385.1\|	2.4e-182	85.94	PREDICTED: transcription initiation factor TFIID subunit 8 [Cucumis melo]	[more]
gi\|1009126308\|ref\|XP_015880081.1\|	8.9e-108	55.00	PREDICTED: transcription initiation factor TFIID subunit 8-like, partial [Ziziph...	[more]
gi\|595936707\|ref\|XP_007215547.1\|	1.5e-107	55.38	hypothetical protein PRUPE_ppa007206mg [Prunus persica]	[more]
gi\|645249772\|ref\|XP_008230896.1\|	4.4e-107	54.86	PREDICTED: transcription initiation factor TFIID subunit 8 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006565	BTP
IPR009072	Histone-fold
IPR019473	TFIID_su8_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003743	translation initiation factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G029330.1	CmoCh04G029330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006565	Bromodomain associated domain	PFAM	PF07524	Bromo_TP	coord: 28..95 score: 1.7
IPR006565	Bromodomain associated domain	SMART	SM00576	17neu3	coord: 24..100 score: 3.0
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 16..96 score: 7.
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 30..95 score: 8.3
IPR019473	Transcription factor TFIID, subunit 8, C-terminal	PFAM	PF10406	TAF8_C	coord: 161..209 score: 3.6
None	No IPR available	PANTHER	PTHR12321	CPG BINDING PROTEIN	coord: 1..306 score: 9.0E
None	No IPR available	PANTHER	PTHR12321:SF53	BROMODOMAIN TRANSCRIPTION FACTOR	coord: 1..306 score: 9.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G029330	Cucsa.157840	Cucumber (Gy14) v1	cgycmoB0442
CmoCh04G029330	CmaCh15G002330	Cucurbita maxima (Rimu)	cmacmoB308
CmoCh04G029330	CmaCh04G028010	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G029330	Cla016517	Watermelon (97103) v1	cmowmB730
CmoCh04G029330	Csa5G639490	Cucumber (Chinese Long) v2	cmocuB714
CmoCh04G029330	MELO3C022035	Melon (DHL92) v3.5.1	cmomeB624
CmoCh04G029330	ClCG11G004810	Watermelon (Charleston Gray)	cmowcgB621
CmoCh04G029330	CSPI05G29390	Wild cucumber (PI 183967)	cmocpiB722
CmoCh04G029330	Lsi03G001730	Bottle gourd (USVL1VR-Ls)	cmolsiB645
CmoCh04G029330	Cp4.1LG01g22630	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G029330	MELO3C022035.2	Melon (DHL92) v3.6.1	cmomedB713
CmoCh04G029330	CsaV3_5G038530	Cucumber (Chinese Long) v3	cmocucB0846
CmoCh04G029330	Cla97C11G211590	Watermelon (97103) v2	cmowmbB697
CmoCh04G029330	Bhi06G000276	Wax gourd	cmowgoB0836
CmoCh04G029330	CsGy5G028850	Cucumber (Gy14) v2	cgybcmoB625
CmoCh04G029330	Carg05883	Silver-seed gourd	carcmoB0033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G029330	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G029330	Bottle gourd (USVL1VR-Ls)	cmolsiB636
CmoCh04G029330	Melon (DHL92) v3.6.1	cmomedB750
CmoCh04G029330	Silver-seed gourd	carcmoB0370
CmoCh04G029330	Cucumber (Chinese Long) v3	cmocucB0800
CmoCh04G029330	Watermelon (97103) v2	cmowmbB727
CmoCh04G029330	Cucurbita moschata (Rifu)	cmocmoB261
CmoCh04G029330	Cucurbita moschata (Rifu)	cmocmoB364
CmoCh04G029330	Cucumber (Gy14) v1	cgycmoB0271
CmoCh04G029330	Wild cucumber (PI 183967)	cmocpiB686
CmoCh04G029330	Cucumber (Chinese Long) v2	cmocuB675
CmoCh04G029330	Melon (DHL92) v3.5.1	cmomeB664
CmoCh04G029330	Watermelon (Charleston Gray)	cmowcgB653
CmoCh04G029330	Watermelon (97103) v1	cmowmB718